Citrus Sinensis ID: 003370
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 825 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZSB5 | 923 | Ubiquitin carboxyl-termin | yes | no | 0.961 | 0.859 | 0.624 | 0.0 | |
| Q93Y01 | 910 | Ubiquitin carboxyl-termin | no | no | 0.953 | 0.864 | 0.635 | 0.0 | |
| Q9MAQ3 | 892 | Putative ubiquitin carbox | no | no | 0.930 | 0.860 | 0.613 | 0.0 | |
| O22207 | 924 | Ubiquitin carboxyl-termin | no | no | 0.935 | 0.835 | 0.505 | 0.0 | |
| Q9C585 | 871 | Ubiquitin carboxyl-termin | no | no | 0.882 | 0.835 | 0.483 | 0.0 | |
| B2GUZ1 | 961 | Ubiquitin carboxyl-termin | yes | no | 0.939 | 0.806 | 0.389 | 1e-145 | |
| P35123 | 962 | Ubiquitin carboxyl-termin | yes | no | 0.935 | 0.802 | 0.387 | 1e-144 | |
| Q9R085 | 952 | Ubiquitin carboxyl-termin | no | no | 0.906 | 0.785 | 0.373 | 1e-140 | |
| Q13107 | 963 | Ubiquitin carboxyl-termin | no | no | 0.935 | 0.801 | 0.386 | 1e-140 | |
| Q5RCD3 | 963 | Ubiquitin carboxyl-termin | no | no | 0.935 | 0.801 | 0.386 | 1e-140 |
| >sp|Q9ZSB5|UBP10_ARATH Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana GN=UBP10 PE=2 SV=2 | Back alignment and function desciption |
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Score = 1031 bits (2666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/823 (62%), Positives = 634/823 (77%), Gaps = 30/823 (3%)
Query: 4 VVVKAMIWKCVEIWKKGRTMFWYLSKSGKSFFVGGPALPRKMISEGIVNEK-RVEVFXLC 62
V+V +WK R + WY GGP + RK+I +G VEV+ LC
Sbjct: 109 VLVPKQVWK--------RLVEWY---------SGGPPIERKLICQGFYTRSYSVEVYPLC 151
Query: 63 LKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQ 122
L L D RD S+TVIRL K+AS R+LYEKVC + G+ QEKA IWDYF+K+++ +S +
Sbjct: 152 LMLTDGRDESRTVIRLGKQASIRELYEKVCAMTGVPQEKAHIWDYFDKRKNGLLDPLSYK 211
Query: 123 TLDDAMLQMDQDILLEVQ---VDNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHT 179
+L+++ L MDQDIL+EV + +M STGN+LALVP+EPSRS +TIAGGP LSNGH+
Sbjct: 212 SLEESSLHMDQDILVEVDGLSSSSQSAMSSTGNELALVPLEPSRSIVTIAGGPTLSNGHS 271
Query: 180 TGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHT 239
T F+ +P DDG DS + KGEKGGLAGL NLGNTCFMNSALQCL HT
Sbjct: 272 TTSNFSLFP------RITSEDDGRDSLSILGKGEKGGLAGLSNLGNTCFMNSALQCLAHT 325
Query: 240 PDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAP 299
P + +YFL DYSD+IN +NPLGM GELA+AFGDLL+KLWSSGR AVAPRAFK KLARFAP
Sbjct: 326 PPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLWSSGRNAVAPRAFKTKLARFAP 385
Query: 300 QFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARND 359
QFSGYNQHDSQELLAFLLDGLHEDLN+VK+KPYIE+KDS RPD+EVA E W HKARND
Sbjct: 386 QFSGYNQHDSQELLAFLLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWNYHKARND 445
Query: 360 SLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMP 419
S+IVDV QGQYKSTLVCPVC K+SITFDPFMYL++PLPST+TR+MT+TVFY +GS LPMP
Sbjct: 446 SVIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSVPLPSTLTRSMTITVFYCDGSRLPMP 505
Query: 420 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHI 479
+TV + K G +DLI AL TACCL DE LLLAEVY+H+IFR+FE P + +S+IKDDEHI
Sbjct: 506 YTVIVPKQGSIRDLITALGTACCLAEDESLLLAEVYDHKIFRYFEIPLDSLSAIKDDEHI 565
Query: 480 VAYRFDRKQGG--KIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDI 537
VAYR ++ G K KLEI++ QE++ D ++GS+ KLFG P VTY+ E LSG DID
Sbjct: 566 VAYRLNQIPKGSRKAKLEILHGGQERAVLDSVRGSDVKLFGTPFVTYVNTEPLSGTDIDA 625
Query: 538 AVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLS 597
+S LSPL + ++ +K H G +NG L + + ++ S +T E+++ RELSF++
Sbjct: 626 VISGFLSPLHKVHAPSKIHNGSDNGHLADATVDQASGILSSPDT-EIDNASDRELSFRIF 684
Query: 598 LTDERISSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTR 657
LTDER + KP+Q +S + PG +VL++W + HE YD SY+ DLP VHKT F+ KKTR
Sbjct: 685 LTDERGLNIKPLQSESSISPGTVTRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTR 744
Query: 658 QEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSR 717
QE+ISLFSCL+AFL EEPLGPDDMW+CP CKEHRQA KKLDLW LPD+LVFHLKRF+YSR
Sbjct: 745 QESISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSR 804
Query: 718 YLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDEN 777
YLKNK+DTFVNFP+ +LDLSKY+K+K+G+SY+Y+L+A+SNHYGGLGGGHYTAYAKLID+N
Sbjct: 805 YLKNKIDTFVNFPVHDLDLSKYVKNKNGQSYLYELYAVSNHYGGLGGGHYTAYAKLIDDN 864
Query: 778 RWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSKTKAEMAETS 820
+WYHFDDSHVS V+E +I+ SAAYVLFYRRV+S+T+ + AE S
Sbjct: 865 KWYHFDDSHVSSVNESEIRNSAAYVLFYRRVRSETETQTAEMS 907
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Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2 |
| >sp|Q93Y01|UBP9_ARATH Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana GN=UBP9 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9MAQ3|UBP11_ARATH Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis thaliana GN=UBP11 PE=3 SV=2 | Back alignment and function description |
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| >sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana GN=UBP5 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9C585|UBP8_ARATH Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana GN=UBP8 PE=1 SV=2 | Back alignment and function description |
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| >sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus GN=Usp4 PE=1 SV=1 | Back alignment and function description |
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| >sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q9R085|UBP15_RAT Ubiquitin carboxyl-terminal hydrolase 15 OS=Rattus norvegicus GN=Usp15 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 825 | ||||||
| 359473972 | 1013 | PREDICTED: ubiquitin carboxyl-terminal h | 0.964 | 0.785 | 0.710 | 0.0 | |
| 297742456 | 944 | unnamed protein product [Vitis vinifera] | 0.964 | 0.843 | 0.710 | 0.0 | |
| 224117792 | 942 | predicted protein [Populus trichocarpa] | 0.953 | 0.835 | 0.696 | 0.0 | |
| 224056675 | 933 | predicted protein [Populus trichocarpa] | 0.944 | 0.834 | 0.689 | 0.0 | |
| 356576624 | 933 | PREDICTED: ubiquitin carboxyl-terminal h | 0.949 | 0.839 | 0.698 | 0.0 | |
| 255555787 | 938 | Ubiquitin carboxyl-terminal hydrolase, p | 0.951 | 0.836 | 0.699 | 0.0 | |
| 356576622 | 928 | PREDICTED: ubiquitin carboxyl-terminal h | 0.943 | 0.838 | 0.698 | 0.0 | |
| 356535266 | 931 | PREDICTED: ubiquitin carboxyl-terminal h | 0.949 | 0.841 | 0.701 | 0.0 | |
| 356535264 | 926 | PREDICTED: ubiquitin carboxyl-terminal h | 0.943 | 0.840 | 0.701 | 0.0 | |
| 449507201 | 915 | PREDICTED: LOW QUALITY PROTEIN: ubiquiti | 0.933 | 0.841 | 0.695 | 0.0 |
| >gi|359473972|ref|XP_002279130.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 9-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1187 bits (3070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/826 (71%), Positives = 684/826 (82%), Gaps = 30/826 (3%)
Query: 15 EIWKKGRTMF-WYLSKSGKSFFVGGPALPRKMISEGIVNEK-RVEVFXLCLKLIDSRDNS 72
E+W+K +F WY GGPALPRKMIS+GI ++K VE++ LCLKL DSRDNS
Sbjct: 198 EVWEK---LFDWY---------KGGPALPRKMISQGITHKKFMVEIYRLCLKLTDSRDNS 245
Query: 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMD 132
Q+VIRLSKKAS +LYE+VC L+ +EQEKARIWDYFNK R + L S+QTL+++ LQMD
Sbjct: 246 QSVIRLSKKASVHELYERVCTLKVVEQEKARIWDYFNK-RKQAILVASNQTLEESNLQMD 304
Query: 133 QDILLEVQVD----NGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYP 188
QDILLEVQ+D +G MDSTGN+LALVP+EP RSS++IAGGP LSNG++ + N Y
Sbjct: 305 QDILLEVQLDGYWPSGFGMDSTGNELALVPMEPPRSSVSIAGGPTLSNGYSKVHTSNLYQ 364
Query: 189 GSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLG 248
GS GSTF DM+DGYD + KG++GGLAGLQNLGNTCFMNSA+QCLVHTP + +YFL
Sbjct: 365 GSPLGSTFTDMEDGYDVLRSVAKGDRGGLAGLQNLGNTCFMNSAIQCLVHTPPIFEYFLQ 424
Query: 249 DYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHD 308
DY++EIN +NPLGM+GELA AFG+LLRKLWSSGR VAPRAFKGKLARFAPQFSGYNQHD
Sbjct: 425 DYTEEINKQNPLGMNGELAFAFGELLRKLWSSGRTPVAPRAFKGKLARFAPQFSGYNQHD 484
Query: 309 SQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQG 368
SQELLAFLLDGLHEDLNRVKQKPYIE KDS GRPDEEVA+ECW+NHKARNDSLIVDV QG
Sbjct: 485 SQELLAFLLDGLHEDLNRVKQKPYIETKDSNGRPDEEVADECWRNHKARNDSLIVDVCQG 544
Query: 369 QYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHG 428
QYKSTLVCPVCSK+SITFDPFMYL+LPLPSTVTR MTVTVFY +GSGLPMP+TVT++KHG
Sbjct: 545 QYKSTLVCPVCSKISITFDPFMYLSLPLPSTVTRIMTVTVFYGDGSGLPMPYTVTVLKHG 604
Query: 429 CCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQ 488
CKDL AL+ ACCLK DE LLLAEVY H+I+R+ ENP+EL+++IKD+EHIVAYR +K+
Sbjct: 605 YCKDLSQALAAACCLKSDENLLLAEVYEHRIYRYIENPSELLTNIKDEEHIVAYRLPKKR 664
Query: 489 GGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLSPLRR 548
G +LEI++R Q++ D LKG ERKL GAPLVTYL E+ +GADIDIAVS+LLSPLRR
Sbjct: 665 AGLTRLEIIHRCQQQCTPDSLKGGERKLLGAPLVTYLGEDAQTGADIDIAVSRLLSPLRR 724
Query: 549 -TY-SSAKAHGGKENGFLPEVIDELSN-------SHNESVETAELEDLCSRELSFQLSLT 599
TY SS+ H GKENG + E D +N S N+S + ELE++ ELSFQLS+T
Sbjct: 725 KTYPSSSNVHSGKENGSVSEATDNPTNSCNTQSGSGNQSTDGTELEEMSRWELSFQLSIT 784
Query: 600 DERISSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQE 659
DER SCKPI+KDS+++PG+ I+V+LDWTD HELYD SY++DLP VHK GFT KKTR E
Sbjct: 785 DERGLSCKPIEKDSLIRPGQFIRVMLDWTDKEHELYDASYLRDLPEVHKNGFTAKKTRPE 844
Query: 660 AISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYL 719
AI+LFSCL+AFL EEPLGP DMWYCP CKEHRQATKKLDLW LPD+LVFHLKRFSYSRYL
Sbjct: 845 AITLFSCLEAFLKEEPLGPQDMWYCPNCKEHRQATKKLDLWRLPDILVFHLKRFSYSRYL 904
Query: 720 KNKLDTFVNFPILNLDLSKYMKSKDG--ESYVYDLFAISNHYGGLGGGHYTAYAKLIDEN 777
KNKLDT VNFPI +LDLS+Y+K KD +S+VY+L+AISNHYGGLGGGHY+AYAKLIDEN
Sbjct: 905 KNKLDTLVNFPIHSLDLSQYVKCKDASSQSHVYELYAISNHYGGLGGGHYSAYAKLIDEN 964
Query: 778 RWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSKTKAEMAETSQGH 823
RWYHFDDSHVSPV E +IKTSAAYVLFY+RVK+ K E S GH
Sbjct: 965 RWYHFDDSHVSPVGESEIKTSAAYVLFYQRVKAAPKIGTGEPSLGH 1010
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742456|emb|CBI34605.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224117792|ref|XP_002317669.1| predicted protein [Populus trichocarpa] gi|222860734|gb|EEE98281.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224056675|ref|XP_002298967.1| predicted protein [Populus trichocarpa] gi|222846225|gb|EEE83772.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356576624|ref|XP_003556430.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 10-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|255555787|ref|XP_002518929.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] gi|223541916|gb|EEF43462.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356576622|ref|XP_003556429.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 10-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356535266|ref|XP_003536169.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 10-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356535264|ref|XP_003536168.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 10-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449507201|ref|XP_004162960.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 9-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 825 | ||||||
| TAIR|locus:2139222 | 910 | UBP10 "AT4G10590" [Arabidopsis | 0.952 | 0.863 | 0.627 | 1.5e-273 | |
| TAIR|locus:2139202 | 923 | UBP9 "AT4G10570" [Arabidopsis | 0.953 | 0.852 | 0.622 | 1.9e-273 | |
| TAIR|locus:2037985 | 892 | UBP11 "AT1G32850" [Arabidopsis | 0.928 | 0.858 | 0.617 | 2.3e-254 | |
| TAIR|locus:2058490 | 924 | UBP5 "ubiquitin-specific prote | 0.934 | 0.834 | 0.501 | 5.9e-199 | |
| TAIR|locus:505006627 | 871 | UBP8 "ubiquitin-specific prote | 0.871 | 0.825 | 0.479 | 5.2e-168 | |
| ZFIN|ZDB-GENE-041008-187 | 1009 | usp4 "ubiquitin specific prote | 0.621 | 0.508 | 0.398 | 4.4e-141 | |
| RGD|628795 | 952 | Usp15 "ubiquitin specific pept | 0.442 | 0.383 | 0.422 | 1.2e-140 | |
| UNIPROTKB|J9PBI4 | 953 | USP15 "Ubiquitin carboxyl-term | 0.443 | 0.384 | 0.428 | 1.5e-140 | |
| UNIPROTKB|E9PCQ3 | 956 | USP15 "Ubiquitin carboxyl-term | 0.443 | 0.382 | 0.428 | 1.9e-140 | |
| UNIPROTKB|Q2HJE4 | 952 | USP15 "Ubiquitin carboxyl-term | 0.443 | 0.384 | 0.428 | 3.1e-140 |
| TAIR|locus:2139222 UBP10 "AT4G10590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2630 (930.9 bits), Expect = 1.5e-273, P = 1.5e-273
Identities = 510/813 (62%), Positives = 623/813 (76%)
Query: 15 EIWKKGRTMFWYLSKSGKSFFVGGPALPRKMISEGIVNEK-RVEVFXLCLKLIDSRDNSQ 73
E+WK R + WY GGP + RK+I +G VEV+ LCL L D RD S+
Sbjct: 114 EVWK--RLVEWYS---------GGPPIERKLICQGFYTRSYSVEVYPLCLMLTDGRDESR 162
Query: 74 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLD-VSDQTLDDAMLQMD 132
TVIRL K+AS R+LYEKVC L G+ QEKA IWDYF+K R LD +S ++L+++ L MD
Sbjct: 163 TVIRLGKQASIRELYEKVCALTGVPQEKAHIWDYFDK-RKNGLLDSLSYKSLEESSLHMD 221
Query: 133 QDILLEVQVDNGI--SMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGS 190
QDILLEV + +M STGN+LALVP+EPSRSS+TIAGGP LSNGH+T F+ +P
Sbjct: 222 QDILLEVDGSSSSQSAMSSTGNELALVPLEPSRSSVTIAGGPTLSNGHSTTSNFSLFP-- 279
Query: 191 SFGSTFMDMDDGYDSYNTXXXXXXXXXXXXQNLGNTCFMNSALQCLVHTPDLAQYFLGDY 250
DDG +S + NLGNTCFMNSALQCL HTP + +YFL DY
Sbjct: 280 ----RITSEDDGSNSLSILGKGEKGGLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDY 335
Query: 251 SDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQ 310
SD+IN +NPLGM GELA+AFGDLL+KLWSSGR +VAPRAFK KLARFAPQFSGYNQHDSQ
Sbjct: 336 SDDINRDNPLGMCGELAIAFGDLLKKLWSSGRNSVAPRAFKTKLARFAPQFSGYNQHDSQ 395
Query: 311 ELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQY 370
ELLAFLLDGLHEDLN+VK+KPYIE+KDS RPD+EVA E W HKARNDS+IVDV QGQY
Sbjct: 396 ELLAFLLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQGQY 455
Query: 371 KSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCC 430
KSTLVCP C K+SITFDPFMYL++PLPST+TR+MTVTVFY +GS LPMP+TV + K+G
Sbjct: 456 KSTLVCPACGKISITFDPFMYLSVPLPSTLTRSMTVTVFYCDGSHLPMPYTVIVPKNGSI 515
Query: 431 KDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDR--KQ 488
+DLI AL TAC L DE LLLAEVY+H+IF++FENP + +SSIKDDEHIVAYR ++ K
Sbjct: 516 RDLITALGTACLLAEDESLLLAEVYDHKIFKYFENPLDSLSSIKDDEHIVAYRLNQMPKG 575
Query: 489 GGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLSPLRR 548
GK KLEI++ Q++ + ++G + KLFG P VTY+ E LSGADID +S+ LSPL +
Sbjct: 576 SGKAKLEILHGGQKRPILESVRGRDVKLFGTPFVTYVNTEPLSGADIDAVLSRFLSPLHK 635
Query: 549 TYSSAKAHGGKENGFLPEV-IDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCK 607
++ +K H G ENG LP+ +DE S + S +T E++D RELSF++ LTDER + K
Sbjct: 636 VHAPSKIHNGSENGHLPDATVDEASEILS-SPDT-EIDDASDRELSFRIFLTDERGLNFK 693
Query: 608 PIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCL 667
P+Q +S + G +VL++W + HE YD SY+ DLP VHKT F+ KKTRQE+ISLFSCL
Sbjct: 694 PLQSESSISLGIATRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTRQESISLFSCL 753
Query: 668 DAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFV 727
+AFL EEPLGPDDMW+CP CKEHRQA KKLDLW LPD+LVFHLKRF+YSRYLKNK+DTFV
Sbjct: 754 EAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFV 813
Query: 728 NFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHV 787
NFP+ +LDLSKY+K+K+ +SY+Y+L+A+SNHYGGLGGGHYTAYAKLID+N WYHFDDSHV
Sbjct: 814 NFPVHDLDLSKYVKNKNDQSYLYELYAVSNHYGGLGGGHYTAYAKLIDDNEWYHFDDSHV 873
Query: 788 SPVSEGDIKTSAAYVLFYRRVKSKTKAEMAETS 820
S V+E +IK SAAYVLFYRRV+S+T+ + E S
Sbjct: 874 SSVNESEIKNSAAYVLFYRRVRSETETQTVEMS 906
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| TAIR|locus:2139202 UBP9 "AT4G10570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2037985 UBP11 "AT1G32850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2058490 UBP5 "ubiquitin-specific protease 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:505006627 UBP8 "ubiquitin-specific protease 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-041008-187 usp4 "ubiquitin specific protease 4 (proto-oncogene)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| RGD|628795 Usp15 "ubiquitin specific peptidase 15" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9PBI4 USP15 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E9PCQ3 USP15 "Ubiquitin carboxyl-terminal hydrolase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q2HJE4 USP15 "Ubiquitin carboxyl-terminal hydrolase 15" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P35123 | UBP4_MOUSE | 3, ., 4, ., 1, 9, ., 1, 2 | 0.3877 | 0.9357 | 0.8024 | yes | no |
| Q9ZSB5 | UBP10_ARATH | 3, ., 4, ., 1, 9, ., 1, 2 | 0.6245 | 0.9612 | 0.8591 | yes | no |
| B2GUZ1 | UBP4_RAT | 3, ., 4, ., 1, 9, ., 1, 2 | 0.3895 | 0.9393 | 0.8064 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.19 | 0.963 |
| 3rd Layer | 3.4.19.12 | 0.946 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
 | estExt_fgenesh4_pm.C_LG_XI0421 | hypothetical protein (942 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 825 | |||
| COG5560 | 823 | COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po | 1e-146 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 4e-61 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 7e-51 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 8e-47 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 1e-39 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 1e-38 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 2e-34 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 5e-34 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 6e-31 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 8e-29 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 5e-26 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 6e-26 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 1e-24 | |
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 1e-23 | |
| cd02663 | 300 | cd02663, Peptidase_C19G, A subfamily of Peptidase | 2e-19 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 9e-19 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 2e-18 | |
| cd02671 | 332 | cd02671, Peptidase_C19O, A subfamily of Peptidase | 3e-15 | |
| cd02657 | 305 | cd02657, Peptidase_C19A, A subfamily of Peptidase | 7e-15 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 8e-15 | |
| cd02657 | 305 | cd02657, Peptidase_C19A, A subfamily of Peptidase | 2e-13 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 2e-13 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 1e-12 | |
| cd02669 | 440 | cd02669, Peptidase_C19M, A subfamily of Peptidase | 1e-12 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 4e-12 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 2e-11 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 3e-10 | |
| cd02669 | 440 | cd02669, Peptidase_C19M, A subfamily of Peptidase | 6e-10 | |
| COG5077 | 1089 | COG5077, COG5077, Ubiquitin carboxyl-terminal hydr | 6e-10 | |
| cd02671 | 332 | cd02671, Peptidase_C19O, A subfamily of Peptidase | 2e-09 | |
| cd02663 | 300 | cd02663, Peptidase_C19G, A subfamily of Peptidase | 1e-08 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 3e-08 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 1e-07 | |
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 1e-07 | |
| cd02673 | 245 | cd02673, Peptidase_C19Q, A subfamily of Peptidase | 3e-07 | |
| pfam13423 | 296 | pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr | 6e-07 | |
| COG5207 | 749 | COG5207, UBP14, Isopeptidase T [Posttranslational | 1e-06 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 3e-06 | |
| pfam13423 | 296 | pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr | 3e-06 | |
| cd02672 | 268 | cd02672, Peptidase_C19P, A subfamily of Peptidase | 5e-05 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 1e-04 | |
| COG5207 | 749 | COG5207, UBP14, Isopeptidase T [Posttranslational | 2e-04 | |
| cd02665 | 228 | cd02665, Peptidase_C19I, A subfamily of Peptidase | 2e-04 |
| >gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 450 bits (1158), Expect = e-146
Identities = 258/833 (30%), Positives = 351/833 (42%), Gaps = 135/833 (16%)
Query: 15 EIWKKGRTMFWYLSKSG-------KSFFVGGPALPRKMISEGIVNEKR--VEVFXLCLKL 65
+ K R Y SG + + + G P I+ + +E VE + + KL
Sbjct: 84 SLKKSLREGIDYSIISGAVWQLLVRWYGLAGLITP--RITVLLPSESAPEVESYPVVFKL 141
Query: 66 -----IDSRDNSQTV----IRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSP 116
I+ + S + R L E+V + R+WD +
Sbjct: 142 HWLFSINGSLINLGHDPVPHSASSHGTLRDLSERVMNAFVDPSDDFRLWDVVPEIMGLR- 200
Query: 117 LDVSDQTLDDAMLQMDQDILLEVQVDNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSN 176
D + +L + D + L+ + P S
Sbjct: 201 -LGLDSFFRRYRVLASDGRVLHPLTRLELFEDRSVLLLSKITRNPD--------WLVDSI 251
Query: 177 GHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCL 236
N+ + G GL+NLGNTC+MNSALQCL
Sbjct: 252 VDDHNRSINK---------------------------EAGTCGLRNLGNTCYMNSALQCL 284
Query: 237 VHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLA 295
+HT +L YFL D Y + IN ENPLGMHG +A A+ DL+++L+ A P FK +
Sbjct: 285 MHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIG 344
Query: 296 RFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEV---ANECWK 352
F +FSGY+Q DSQE +AFLLDGLHEDLNR+ +KPY D D V A ECW
Sbjct: 345 SFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWW 404
Query: 353 NHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYAN 412
H RNDS+I D+FQG YKSTL CP C VSITFDPFM LTLPLP ++ T+ VF +
Sbjct: 405 EHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPES 464
Query: 413 GSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISS 472
G P + L + L + + + +Y + E +++
Sbjct: 465 GR--RQPLKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYGGNYNMLEPADKVLLQ 522
Query: 473 -IKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAP----------- 520
I + + Y I K +LFG P
Sbjct: 523 DIPQTDFVYLY-------ETNDNGIEVPVVHLRIEKGYKSK--RLFGDPFLQLNVLIKAS 573
Query: 521 ----LVTYLEE--EHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNS 574
LV EE + D+ + L R SS ++ E+
Sbjct: 574 IYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSP--------SSWLKLETEIDTK 625
Query: 575 HNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILKPGKHIKVLLDWTDDVHEL 634
E VE Q++ D + SC K L
Sbjct: 626 REEQVEEEG-----------QMNFNDAVVISC--------EWEEKRYLSLFS-------- 658
Query: 635 YDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQAT 694
YDP + + + G + I+L CL+ F E LG D WYCP CKE RQA+
Sbjct: 659 YDPLWT-----IREIGAAERT-----ITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQAS 708
Query: 695 KKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFA 754
K+++LW LP +L+ HLKRFS R ++K+D V +PI +LDLS D +YDL+A
Sbjct: 709 KQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYA 768
Query: 755 ISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRR 807
+ NHYGGL GGHYTAYA+ N WY FDDS ++ V D TS+AYVLFYRR
Sbjct: 769 VDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821
|
Length = 823 |
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 825 | |||
| COG5560 | 823 | UBP12 Ubiquitin C-terminal hydrolase [Posttranslat | 100.0 | |
| KOG1870 | 842 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| COG5533 | 415 | UBP5 Ubiquitin C-terminal hydrolase [Posttranslati | 100.0 | |
| KOG1865 | 545 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| cd02663 | 300 | Peptidase_C19G A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02668 | 324 | Peptidase_C19L A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02671 | 332 | Peptidase_C19O A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02660 | 328 | Peptidase_C19D A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02667 | 279 | Peptidase_C19K A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02669 | 440 | Peptidase_C19M A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1868 | 653 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| cd02664 | 327 | Peptidase_C19H A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02658 | 311 | Peptidase_C19B A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02657 | 305 | Peptidase_C19A A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02661 | 304 | Peptidase_C19E A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02659 | 334 | peptidase_C19C A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02662 | 240 | Peptidase_C19F A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1873 | 877 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| cd02674 | 230 | Peptidase_C19R A subfamily of peptidase C19. Pepti | 100.0 | |
| cd02673 | 245 | Peptidase_C19Q A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1867 | 492 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| cd02665 | 228 | Peptidase_C19I A subfamily of Peptidase C19. Pepti | 100.0 | |
| PF00443 | 269 | UCH: Ubiquitin carboxyl-terminal hydrolase; InterP | 100.0 | |
| cd02666 | 343 | Peptidase_C19J A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG0944 | 763 | consensus Ubiquitin-specific protease UBP14 [Postt | 100.0 | |
| KOG1866 | 944 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| cd02257 | 255 | Peptidase_C19 Peptidase C19 contains ubiquitinyl h | 100.0 | |
| COG5077 | 1089 | Ubiquitin carboxyl-terminal hydrolase [Posttransla | 100.0 | |
| cd02672 | 268 | Peptidase_C19P A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG4598 | 1203 | consensus Putative ubiquitin-specific protease [Po | 100.0 | |
| COG5207 | 749 | UBP14 Isopeptidase T [Posttranslational modificati | 100.0 | |
| KOG1863 | 1093 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| cd02670 | 241 | Peptidase_C19N A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| PF13423 | 295 | UCH_1: Ubiquitin carboxyl-terminal hydrolase | 99.97 | |
| KOG1871 | 420 | consensus Ubiquitin-specific protease [Posttransla | 99.96 | |
| KOG2026 | 442 | consensus Spindle pole body protein - Sad1p [Cytos | 99.96 | |
| KOG1872 | 473 | consensus Ubiquitin-specific protease [Posttransla | 99.93 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 99.53 | |
| PF14836 | 88 | Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A | 99.46 | |
| PF14533 | 213 | USP7_C2: Ubiquitin-specific protease C-terminal; P | 98.06 | |
| PF15499 | 275 | Peptidase_C98: Ubiquitin-specific peptidase-like, | 97.3 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 96.87 | |
| smart00695 | 86 | DUSP Domain in ubiquitin-specific proteases. | 96.87 | |
| cd01796 | 71 | DDI1_N DNA damage inducible protein 1 ubiquitin-li | 95.81 | |
| PTZ00044 | 76 | ubiquitin; Provisional | 95.69 | |
| PF14560 | 87 | Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K | 95.52 | |
| cd01789 | 84 | Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol | 95.03 | |
| cd01806 | 76 | Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn | 94.74 | |
| cd01807 | 74 | GDX_N ubiquitin-like domain of GDX. GDX contains a | 94.62 | |
| cd01812 | 71 | BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter | 94.4 | |
| cd01803 | 76 | Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40 | 94.4 | |
| cd01810 | 74 | ISG15_repeat2 ISG15 ubiquitin-like protein, second | 94.22 | |
| cd01763 | 87 | Sumo Small ubiquitin-related modifier (SUMO). Smal | 94.13 | |
| cd01799 | 75 | Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO | 93.9 | |
| cd01794 | 70 | DC_UbP_C dendritic cell derived ubiquitin-like pro | 93.51 | |
| cd01798 | 70 | parkin_N amino-terminal ubiquitin-like of parkin p | 93.46 | |
| cd01808 | 71 | hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC | 93.05 | |
| cd01802 | 103 | AN1_N ubiquitin-like domain of AN1. AN1 (also know | 93.0 | |
| cd01795 | 107 | USP48_C USP ubiquitin-specific protease. The USP ( | 92.98 | |
| PF00240 | 69 | ubiquitin: Ubiquitin family; InterPro: IPR000626 U | 92.94 | |
| cd01793 | 74 | Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui | 92.72 | |
| cd01809 | 72 | Scythe_N Ubiquitin-like domain of Scythe protein. | 92.63 | |
| cd01804 | 78 | midnolin_N Ubiquitin-like domain of midnolin. midn | 92.42 | |
| PF00789 | 82 | UBX: UBX domain; InterPro: IPR001012 The UBX domai | 92.22 | |
| smart00166 | 80 | UBX Domain present in ubiquitin-regulatory protein | 92.15 | |
| cd01792 | 80 | ISG15_repeat1 ISG15 ubiquitin-like protein, first | 91.78 | |
| cd01805 | 77 | RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo | 91.53 | |
| cd01797 | 78 | NIRF_N amino-terminal ubiquitin-like domain of Np9 | 91.51 | |
| cd01791 | 73 | Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know | 91.23 | |
| PF11976 | 72 | Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter | 90.83 | |
| cd01800 | 76 | SF3a120_C Ubiquitin-like domain of Mammalian splic | 90.83 | |
| PF11543 | 80 | UN_NPL4: Nuclear pore localisation protein NPL4; I | 90.2 | |
| cd01774 | 85 | Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i | 90.19 | |
| smart00213 | 64 | UBQ Ubiquitin homologues. Ubiquitin-mediated prote | 90.18 | |
| cd01767 | 77 | UBX UBX (ubiquitin regulatory X) domain. The UBX ( | 90.07 | |
| cd01771 | 80 | Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac | 89.89 | |
| cd01769 | 69 | UBL Ubiquitin-like domain of UBL. UBLs function by | 89.05 | |
| cd01773 | 82 | Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i | 87.88 | |
| cd01813 | 74 | UBP_N UBP ubiquitin processing protease. The UBP ( | 85.62 | |
| PF05408 | 193 | Peptidase_C28: Foot-and-mouth virus L-proteinase; | 84.62 | |
| cd01772 | 79 | SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst | 83.15 | |
| cd01770 | 79 | p47_UBX p47-like ubiquitin domain. p47_UBX p47 is | 81.65 | |
| PF06337 | 99 | DUSP: DUSP domain; InterPro: IPR006615 Deubiquitin | 80.05 |
| >COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-115 Score=946.10 Aligned_cols=704 Identities=34% Similarity=0.567 Sum_probs=529.2
Q ss_pred EEEEehHHHHHHHHhccCceeeeeccCCCccccccCCCeeeeEeecCCCCceeEEEcccceEEeeccCC---------Cc
Q 003370 3 MVVVKAMIWKCVEIWKKGRTMFWYLSKSGKSFFVGGPALPRKMISEGIVNEKRVEVFXLCLKLIDSRDN---------SQ 73 (825)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~y~ggp~I~R~Vi~~~~~~~~~VEvyP~~l~l~~~~~~---------~~ 73 (825)
+-.|.++.|+.| +.|||+. |+.++|.++--+......||+||+.|+|+.+..- ..
T Consensus 95 ysiis~~vw~ll--------vrwyGl~--------gl~~pr~tvll~ses~p~ve~yp~~f~lh~Lf~ing~~~n~gh~p 158 (823)
T COG5560 95 YSIISGAVWQLL--------VRWYGLA--------GLITPRITVLLPSESAPEVESYPVVFKLHWLFSINGSLINLGHDP 158 (823)
T ss_pred eeeechHHHHHH--------HHHhccc--------ccceeeEEeccccccCCccccccceEEEEEEEeccchhhhcCCCc
Confidence 456889999999 9999998 4788898877665444489999999999987552 12
Q ss_pred eEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHH-HHhccCCCe----EEEEEEecCceecc
Q 003370 74 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLD-DAMLQMDQD----ILLEVQVDNGISMD 148 (825)
Q Consensus 74 ~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~-~~~~~~~~~----~~~E~~~~~~~~~~ 148 (825)
..+.+|+..|+.+|.+++..+|-++.+++|||++..++-. .-+.+...-+. .+....++. ..+|+-.+.+
T Consensus 159 ~~~s~ss~~tlrdl~e~vmnaf~~psD~FRLw~v~~~~~~-~r~~~~s~f~~~~~~a~~~~~l~~~t~~el~~d~s---- 233 (823)
T COG5560 159 VPHSASSHGTLRDLSERVMNAFVDPSDDFRLWDVVPEIMG-LRLGLDSFFRRYRVLASDGRVLHPLTRLELFEDRS---- 233 (823)
T ss_pred ceeeccccchHHHHHHHHHHHhcCcccceeEEEecCCccc-ccccCHHHHhhcchhccchhhhcccHHHHhccchh----
Confidence 3678999999999999999999999999999998765543 11111100000 000011111 1111111111
Q ss_pred CCCCCCcccccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCCCCcCCCCCCCCCccccccCCCCcccceecCCCchh
Q 003370 149 STGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCF 228 (825)
Q Consensus 149 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCY 228 (825)
..-++ ....|+.- ...+ .. .+.++.. .+.-|.+||.|+|||||
T Consensus 234 ----------------~lll~--kit~np~w-----------lvds-i~-~~~n~si------nke~GtcGL~NlGNTCy 276 (823)
T COG5560 234 ----------------VLLLS--KITRNPDW-----------LVDS-IV-DDHNRSI------NKEAGTCGLRNLGNTCY 276 (823)
T ss_pred ----------------hhHHh--hhccCCcc-----------ceee-ec-chhhhhH------HhhccccceecCCccee
Confidence 00000 00011110 0000 00 0111111 02249999999999999
Q ss_pred HHHHHHHHhCChHHHHHHHhc-CccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHHhhhCCCCCCCCCC
Q 003370 229 MNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQH 307 (825)
Q Consensus 229 mNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~~~F~~~~Qq 307 (825)
|||+||||.|++.||+||++. |.+.+|..||+|+.|.+|.+|+.|+++++.+...+++|..|+..|+.++..|+||.||
T Consensus 277 MNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~tIG~fn~~fsGy~QQ 356 (823)
T COG5560 277 MNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQ 356 (823)
T ss_pred cchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHHHhhhHHHhcCccch
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCC---hHHHHHHHHhhccccCCCcccccceEEEEEEEEcCCCCCeee
Q 003370 308 DSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRP---DEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSI 384 (825)
Q Consensus 308 DA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~---~~~~a~~~w~~~~~~~~SiI~~lF~G~~~s~i~C~~C~~~S~ 384 (825)
|+|||+.+|||+|||+|||+.+|||.+.+|..... ....|+++|..|+.||+|||+|+|+|.++|+++|+.|+.+|+
T Consensus 357 DSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmyKSTL~Cp~C~~vsi 436 (823)
T COG5560 357 DSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSI 436 (823)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhceeeccCcCceee
Confidence 99999999999999999999999999887654333 356799999999999999999999999999999999999999
Q ss_pred eecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeecceeeEeec
Q 003370 385 TFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFE 464 (825)
Q Consensus 385 ~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~k~~~ 464 (825)
+||||++|+||||.+..|..+|++||.+|...| +.+.+.+.+++.+|++.+....|+-.--.+.+.++|-+++++.+.
T Consensus 437 tfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~p--l~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~~iy~g~~y~~l~ 514 (823)
T COG5560 437 TFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQP--LKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYGGNYNMLE 514 (823)
T ss_pred eecchhhccccCchhhcccccEEEECCCCCCCc--eEEEEeccchHHHHHHHHHHHhccCCccceeEEEEEeccchhhcc
Confidence 999999999999999999999999999998777 677888889999999888877776666688999999999999999
Q ss_pred Ccccc-cccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEE-EEecCCCCCHHHHHHHHHHH
Q 003370 465 NPAEL-ISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLV-TYLEEEHLSGADIDIAVSKL 542 (825)
Q Consensus 465 d~~~~-~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~-~~~~~~~~~~~~l~~~v~~~ 542 (825)
..++. +..|.+.|++|.|+ ..++...++++|-+.+.. ..+..+||.|++ ..+.....-..+|.+.+.+.
T Consensus 515 ~~dk~ll~~I~~~d~vylYe---~~~ngi~vpvvh~~~~~g------Yks~rlFg~pflqlnv~~~~~i~~kLvkE~~el 585 (823)
T COG5560 515 PADKVLLQDIPQTDFVYLYE---TNDNGIEVPVVHLRIEKG------YKSKRLFGDPFLQLNVLIKASIYDKLVKEFEEL 585 (823)
T ss_pred hhhHHHHhhcCccceEEEee---cCCCCeEEEEEecccccc------ccchhhhCCcceEEEeecchhhHHHHHHHHHHH
Confidence 77774 56799999999999 555668899999865543 456789999963 33333333333332222222
Q ss_pred ccccccc-cccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCCccCCCC-CCCCc
Q 003370 543 LSPLRRT-YSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSIL-KPGKH 620 (825)
Q Consensus 543 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 620 (825)
+...... ...+..+.. --. .+. +.......+++...+ .+..+ ...++.. ..+..
T Consensus 586 l~~v~~k~tdvd~~~~q---~~l-----~r~--es~p~~wl~l~teid-------------~kree-~veeE~~~n~nd~ 641 (823)
T COG5560 586 LVLVEMKKTDVDLVSEQ---VRL-----LRE--ESSPSSWLKLETEID-------------TKREE-QVEEEGQMNFNDA 641 (823)
T ss_pred HHHHhhcchhhhhhhhh---ccc-----hhc--ccCcchhhhhhhhcc-------------chhhh-hhhhhhccCCCcc
Confidence 1111100 000000000 000 000 000000000000000 00000 0001111 23456
Q ss_pred eEEEEEecCccccc-cC--ccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCccccccceEEEEE
Q 003370 621 IKVLLDWTDDVHEL-YD--PSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKL 697 (825)
Q Consensus 621 ~~i~i~w~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~ 697 (825)
+.+.+.|.+..+.. |. ..... -+.+ ...+.+||+|||+.|.++|+|+..|.||||.||.+++|+|+|
T Consensus 642 vvi~cew~ek~y~~lFsy~~lw~~-----~ei~-----~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqm 711 (823)
T COG5560 642 VVISCEWEEKRYLSLFSYDPLWTI-----REIG-----AAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQM 711 (823)
T ss_pred eEEeeeccccchhhhhcCCccchh-----HHhh-----hccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhh
Confidence 77889999877665 53 11110 0011 125789999999999999999999999999999999999999
Q ss_pred EeeeCCCeEEEEEeeeEeecccccccceeeeccCcccccccccccCCCCceEEEEEEEEEeecCCCCCeEEEEEeeCCCC
Q 003370 698 DLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDEN 777 (825)
Q Consensus 698 ~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVv~H~G~l~gGHYtAy~k~~~~~ 777 (825)
+||++|+|||||||||++.+.+++||++.|.|||.+|||+.|+....+....|+||||.||||+++|||||||+||+.++
T Consensus 712 elwrlP~iLiihLkRFss~rsfrdKiddlVeyPiddldLs~~~~~~~~p~liydlyavDNHygglsgGHYtAyarn~~n~ 791 (823)
T COG5560 712 ELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANN 791 (823)
T ss_pred hhhcCChheeeehhhhhhcccchhhhhhhhccccccccccceEEeecCcceEEEeeeccccccccCCcceeeeeecccCC
Confidence 99999999999999999999999999999999999999999998777677999999999999999999999999999999
Q ss_pred cEEEeCCCceeecCcCcccCCCeEEEEEEEec
Q 003370 778 RWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVK 809 (825)
Q Consensus 778 ~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~R~~ 809 (825)
+||+|||++|+++.+++.++++||||||+|+.
T Consensus 792 ~wy~fdDsritevdped~vtssaYvLFyrrk~ 823 (823)
T COG5560 792 GWYLFDDSRITEVDPEDSVTSSAYVLFYRRKS 823 (823)
T ss_pred ceEEecCccccccCccccccceeEEEEEEecC
Confidence 99999999999999999999999999999974
|
|
| >KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02663 Peptidase_C19G A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02668 Peptidase_C19L A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02671 Peptidase_C19O A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02660 Peptidase_C19D A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02667 Peptidase_C19K A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02669 Peptidase_C19M A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02664 Peptidase_C19H A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02658 Peptidase_C19B A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02657 Peptidase_C19A A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02661 Peptidase_C19E A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02659 peptidase_C19C A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02662 Peptidase_C19F A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02674 Peptidase_C19R A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >cd02673 Peptidase_C19Q A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02665 Peptidase_C19I A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >cd02666 Peptidase_C19J A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02672 Peptidase_C19P A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02670 Peptidase_C19N A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A | Back alignment and domain information |
|---|
| >PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A | Back alignment and domain information |
|---|
| >PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >smart00695 DUSP Domain in ubiquitin-specific proteases | Back alignment and domain information |
|---|
| >cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain | Back alignment and domain information |
|---|
| >PTZ00044 ubiquitin; Provisional | Back alignment and domain information |
|---|
| >PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A | Back alignment and domain information |
|---|
| >cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B | Back alignment and domain information |
|---|
| >cd01806 Nedd8 Nebb8-like ubiquitin protein | Back alignment and domain information |
|---|
| >cd01807 GDX_N ubiquitin-like domain of GDX | Back alignment and domain information |
|---|
| >cd01812 BAG1_N Ubiquitin-like domain of BAG1 | Back alignment and domain information |
|---|
| >cd01803 Ubiquitin Ubiquitin | Back alignment and domain information |
|---|
| >cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 | Back alignment and domain information |
|---|
| >cd01763 Sumo Small ubiquitin-related modifier (SUMO) | Back alignment and domain information |
|---|
| >cd01799 Hoil1_N Ubiquitin-like domain of HOIL1 | Back alignment and domain information |
|---|
| >cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein | Back alignment and domain information |
|---|
| >cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein | Back alignment and domain information |
|---|
| >cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2 | Back alignment and domain information |
|---|
| >cd01802 AN1_N ubiquitin-like domain of AN1 | Back alignment and domain information |
|---|
| >cd01795 USP48_C USP ubiquitin-specific protease | Back alignment and domain information |
|---|
| >PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade | Back alignment and domain information |
|---|
| >cd01793 Fubi Fubi ubiquitin-like protein | Back alignment and domain information |
|---|
| >cd01809 Scythe_N Ubiquitin-like domain of Scythe protein | Back alignment and domain information |
|---|
| >cd01804 midnolin_N Ubiquitin-like domain of midnolin | Back alignment and domain information |
|---|
| >PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast | Back alignment and domain information |
|---|
| >smart00166 UBX Domain present in ubiquitin-regulatory proteins | Back alignment and domain information |
|---|
| >cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 | Back alignment and domain information |
|---|
| >cd01805 RAD23_N Ubiquitin-like domain of RAD23 | Back alignment and domain information |
|---|
| >cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF | Back alignment and domain information |
|---|
| >cd01791 Ubl5 UBL5 ubiquitin-like modifier | Back alignment and domain information |
|---|
| >PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins | Back alignment and domain information |
|---|
| >cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 | Back alignment and domain information |
|---|
| >PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway | Back alignment and domain information |
|---|
| >cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain | Back alignment and domain information |
|---|
| >smart00213 UBQ Ubiquitin homologues | Back alignment and domain information |
|---|
| >cd01767 UBX UBX (ubiquitin regulatory X) domain | Back alignment and domain information |
|---|
| >cd01771 Faf1_UBX Faf1 UBX domain | Back alignment and domain information |
|---|
| >cd01769 UBL Ubiquitin-like domain of UBL | Back alignment and domain information |
|---|
| >cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain | Back alignment and domain information |
|---|
| >cd01813 UBP_N UBP ubiquitin processing protease | Back alignment and domain information |
|---|
| >PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >cd01772 SAKS1_UBX SAKS1-like UBX domain | Back alignment and domain information |
|---|
| >cd01770 p47_UBX p47-like ubiquitin domain | Back alignment and domain information |
|---|
| >PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 825 | ||||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 4e-70 | ||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 3e-48 | ||
| 3n3k_A | 396 | The Catalytic Domain Of Usp8 In Complex With A Usp8 | 4e-45 | ||
| 3n3k_A | 396 | The Catalytic Domain Of Usp8 In Complex With A Usp8 | 1e-32 | ||
| 2gfo_A | 396 | Structure Of The Catalytic Domain Of Human Ubiquiti | 7e-43 | ||
| 2gfo_A | 396 | Structure Of The Catalytic Domain Of Human Ubiquiti | 1e-32 | ||
| 2hd5_A | 359 | Usp2 In Complex With Ubiquitin Length = 359 | 2e-35 | ||
| 2hd5_A | 359 | Usp2 In Complex With Ubiquitin Length = 359 | 2e-27 | ||
| 3v6c_A | 367 | Crystal Structure Of Usp2 In Complex With Mutated U | 2e-35 | ||
| 3v6c_A | 367 | Crystal Structure Of Usp2 In Complex With Mutated U | 3e-27 | ||
| 2ibi_A | 374 | Covalent Ubiquitin-Usp2 Complex Length = 374 | 2e-35 | ||
| 2ibi_A | 374 | Covalent Ubiquitin-Usp2 Complex Length = 374 | 6e-27 | ||
| 3nhe_A | 348 | High Resolution Structure (1.26a) Of Usp2a In Compl | 3e-34 | ||
| 3nhe_A | 348 | High Resolution Structure (1.26a) Of Usp2a In Compl | 3e-27 | ||
| 2y5b_A | 370 | Structure Of Usp21 In Complex With Linear Diubiquit | 3e-27 | ||
| 2y5b_A | 370 | Structure Of Usp21 In Complex With Linear Diubiquit | 6e-25 | ||
| 3i3t_A | 355 | Crystal Structure Of Covalent Ubiquitin-usp21 Compl | 3e-27 | ||
| 3i3t_A | 355 | Crystal Structure Of Covalent Ubiquitin-usp21 Compl | 5e-25 | ||
| 3mtn_A | 373 | Usp21 In Complex With A Ubiquitin-based, Usp21-spec | 4e-27 | ||
| 3mtn_A | 373 | Usp21 In Complex With A Ubiquitin-based, Usp21-spec | 5e-25 | ||
| 3mhh_A | 476 | Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE | 1e-19 | ||
| 4fip_A | 476 | Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- | 1e-19 | ||
| 3m99_A | 471 | Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod | 1e-19 | ||
| 3ihp_A | 854 | Covalent Ubiquitin-Usp5 Complex Length = 854 | 1e-05 | ||
| 1nb8_A | 353 | Structure Of The Catalytic Domain Of Usp7 (Hausp) L | 3e-04 | ||
| 3pv1_A | 225 | Crystal Structure Of The Usp15 Dusp-Ubl Domains Len | 6e-04 | ||
| 3ppa_A | 237 | Structure Of The Dusp-Ubl Domains Of Usp15 Length = | 6e-04 | ||
| 1nbf_A | 353 | Crystal Structure Of A Ubp-Family Deubiquitinating | 6e-04 | ||
| 4a3o_A | 220 | Crystal Structure Of The Usp15 Dusp-Ubl Monomer Len | 6e-04 | ||
| 3t9l_A | 230 | Structure Of N-Terminal Dusp-Ubl Domains Of Human U | 6e-04 | ||
| 1vjv_A | 415 | Crystal Structure Of Ubiquitin Carboxyl-terminal Hy | 9e-04 |
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
|
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
| >pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 | Back alignment and structure |
| >pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 | Back alignment and structure |
| >pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 | Back alignment and structure |
| >pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 | Back alignment and structure |
| >pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 | Back alignment and structure |
| >pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 | Back alignment and structure |
| >pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 | Back alignment and structure |
| >pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 | Back alignment and structure |
| >pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 | Back alignment and structure |
| >pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 | Back alignment and structure |
| >pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 | Back alignment and structure |
| >pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 | Back alignment and structure |
| >pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 | Back alignment and structure |
| >pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 | Back alignment and structure |
| >pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 | Back alignment and structure |
| >pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 | Back alignment and structure |
| >pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 | Back alignment and structure |
| >pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 | Back alignment and structure |
| >pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 | Back alignment and structure |
| >pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 | Back alignment and structure |
| >pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 | Back alignment and structure |
| >pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex Length = 854 | Back alignment and structure |
| >pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 | Back alignment and structure |
| >pdb|3PV1|A Chain A, Crystal Structure Of The Usp15 Dusp-Ubl Domains Length = 225 | Back alignment and structure |
| >pdb|3PPA|A Chain A, Structure Of The Dusp-Ubl Domains Of Usp15 Length = 237 | Back alignment and structure |
| >pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 | Back alignment and structure |
| >pdb|4A3O|A Chain A, Crystal Structure Of The Usp15 Dusp-Ubl Monomer Length = 220 | Back alignment and structure |
| >pdb|3T9L|A Chain A, Structure Of N-Terminal Dusp-Ubl Domains Of Human Usp15 Length = 230 | Back alignment and structure |
| >pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase 6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A Resolution Length = 415 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
Score = 306 bits (785), Expect = 9e-97
Identities = 99/247 (40%), Positives = 137/247 (55%), Gaps = 4/247 (1%)
Query: 162 SRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQ 221
S L G P ++ + YP + + N G L GL+
Sbjct: 10 HSSGLVPRGSPTVTPTVNRENKPTCYPKAEISRLS---ASQIRNLNPVFGGSGPALTGLR 66
Query: 222 NLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLLRKLWSS 280
NLGNTC+MNS LQCL + P LA YF Y D+IN N LG GE+A FG +++ LW+
Sbjct: 67 NLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTG 126
Query: 281 GRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGG 340
++P+ FK + + QF+GY+Q DSQELL FL+DGLHEDLN+ + + +++
Sbjct: 127 QYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDH 186
Query: 341 RPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTV 400
D + A W+ HK N+S+IV +FQGQ+KST+ C C K S TF+ FMYL+LPL ST
Sbjct: 187 LDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTS 246
Query: 401 TRTMTVT 407
T+
Sbjct: 247 KCTLQDC 253
|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus} Length = 231 | Back alignment and structure |
|---|
| >4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A Length = 217 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens} Length = 530 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 825 | |||
| 2y6e_A | 367 | Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; | 100.0 | |
| 2gfo_A | 396 | Ubiquitin carboxyl-terminal hydrolase 8; protease, | 100.0 | |
| 3nhe_A | 348 | Ubiquitin carboxyl-terminal hydrolase 2; cysteine | 100.0 | |
| 3i3t_A | 355 | Ubiquitin carboxyl-terminal hydrolase 21; hydrolas | 100.0 | |
| 1nb8_A | 353 | Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub | 100.0 | |
| 2ayn_A | 404 | Ubiquitin carboxyl-terminal hydrolase 14; deubiqui | 100.0 | |
| 3mhs_A | 476 | Ubiquitin carboxyl-terminal hydrolase 8; multi-pro | 100.0 | |
| 1vjv_A | 415 | Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, | 100.0 | |
| 2f1z_A | 522 | Ubiquitin carboxyl-terminal hydrolase 7; hausp, US | 100.0 | |
| 3ihp_A | 854 | Ubiquitin carboxyl-terminal hydrolase 5; hydrolase | 100.0 | |
| 2vhf_A | 374 | Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki | 99.94 | |
| 4a3p_A | 217 | Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H | 99.89 | |
| 3jyu_A | 231 | Ubiquitin carboxyl-terminal hydrolase; domain in u | 99.89 | |
| 2ylm_A | 530 | Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70 | 99.4 | |
| 2kj6_A | 97 | Tubulin folding cofactor B; methods development, N | 95.64 | |
| 4b6w_A | 86 | Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik | 95.46 | |
| 2kan_A | 94 | Uncharacterized protein AR3433A; ubiquitin fold, a | 95.31 | |
| 2kjr_A | 95 | CG11242; UBL, ubiquitin, ubiquitin-like, structura | 95.23 | |
| 1wjn_A | 97 | Tubulin-folding protein TBCE; ubiquitin-like domai | 95.09 | |
| 3a9j_A | 76 | Ubiquitin; protein complex, cytoplasm, isopeptide | 94.99 | |
| 1wh3_A | 87 | 59 kDa 2'-5'-oligoadenylate synthetase like protei | 94.83 | |
| 3plu_A | 93 | Ubiquitin-like modifier HUB1; ubiquitin-like, HUB- | 94.81 | |
| 3phx_B | 79 | Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu | 94.54 | |
| 2daf_A | 118 | FLJ35834 protein; hypothetical protein FLJ35834, u | 94.53 | |
| 1v5o_A | 102 | 1700011N24RIK protein; hypothetical protein, ubiqu | 94.39 | |
| 1ndd_A | 76 | NEDD8, protein (ubiquitin-like protein NEDD8); pro | 94.29 | |
| 2l7r_A | 93 | Ubiquitin-like protein FUBI; structural genomics, | 94.23 | |
| 4dbg_A | 105 | Ranbp-type and C3HC4-type zinc finger-containing; | 94.23 | |
| 1sif_A | 88 | Ubiquitin; hydrophobic mutants, folding, stability | 94.22 | |
| 1wx7_A | 106 | Ubiquilin 3; ubiquitin-like domain, structural gen | 94.18 | |
| 3n3k_B | 85 | Ubiquitin; hydrolase, protease, thiol protease, DU | 94.17 | |
| 4fbj_B | 88 | NEDD8; effector-HOST target complex, glutamine dea | 94.09 | |
| 1yqb_A | 100 | Ubiquilin 3; structural genomics consortium, ubiqu | 94.02 | |
| 2hj8_A | 88 | Interferon-induced 17 kDa protein; HR2873B, human | 93.98 | |
| 2uyz_B | 79 | Small ubiquitin-related modifier 1; sumoylation, c | 93.98 | |
| 3k9o_B | 96 | Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b | 93.96 | |
| 1wxv_A | 92 | BAG-family molecular chaperone regulator-1; struct | 93.89 | |
| 3v6c_B | 91 | Ubiquitin; structural genomics, structural genomic | 93.87 | |
| 3dbh_I | 88 | NEDD8; cell cycle, activating enzyme, apoptosis, m | 93.86 | |
| 3mtn_B | 85 | UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit | 93.8 | |
| 1wyw_B | 97 | Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho | 93.73 | |
| 1yx5_B | 98 | Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s | 93.7 | |
| 2bwf_A | 77 | Ubiquitin-like protein DSK2; signaling protein, UB | 93.55 | |
| 4dwf_A | 90 | HLA-B-associated transcript 3; ubiquitin-like doma | 93.53 | |
| 3qx1_A | 84 | FAS-associated factor 1; UBX, protein binding, P97 | 93.43 | |
| 2ojr_A | 111 | Ubiquitin; lanthide-binding TAG, terbium, TB, SAD | 93.33 | |
| 1v6e_A | 95 | Cytoskeleton-associated protein 1; tubulin-specifi | 93.31 | |
| 2klc_A | 101 | Ubiquilin-1; ubiquitin-like, structural genomics, | 93.19 | |
| 1wy8_A | 89 | NP95-like ring finger protein, isoform A; ubiquiti | 93.06 | |
| 1t0y_A | 122 | Tubulin folding cofactor B; ubiquitin-like, cytosk | 92.94 | |
| 4hcn_B | 98 | Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas | 92.94 | |
| 4eew_A | 88 | Large proline-rich protein BAG6; ubiquitin-like fo | 92.8 | |
| 2fnj_B | 118 | Transcription elongation factor B polypeptide 2; b | 92.79 | |
| 3a4r_A | 79 | Nfatc2-interacting protein; ubiquitin fold, coiled | 92.74 | |
| 2kk8_A | 84 | Uncharacterized protein AT4G05270; solution arabid | 92.7 | |
| 1j8c_A | 125 | Ubiquitin-like protein hplic-2; ubiquitin-like dom | 92.67 | |
| 1we6_A | 111 | Splicing factor, putative; structural genomics, ub | 92.5 | |
| 3vdz_A | 111 | Ubiquitin-40S ribosomal protein S27A; gadolinium, | 92.49 | |
| 2kd0_A | 85 | LRR repeats and ubiquitin-like domain-containing p | 92.46 | |
| 2wyq_A | 85 | HHR23A, UV excision repair protein RAD23 homolog A | 92.4 | |
| 1wju_A | 100 | NEDD8 ultimate buster-1; ubiquitin-like domain, st | 92.29 | |
| 2dzi_A | 81 | Ubiquitin-like protein 4A; GDX, structural genomic | 92.28 | |
| 1uh6_A | 100 | Ubiquitin-like 5; beta-grAsp fold, structural geno | 92.15 | |
| 2kdi_A | 114 | Ubiquitin, vacuolar protein sorting-associated pro | 92.08 | |
| 1wx8_A | 96 | Riken cDNA 4931431F19; ubiquitin-like domain, ubiq | 92.03 | |
| 4ajy_B | 118 | Transcription elongation factor B polypeptide 2; E | 91.98 | |
| 3m63_B | 101 | Ubiquitin domain-containing protein DSK2; armadill | 91.92 | |
| 3q3f_A | 189 | Ribonuclease/ubiquitin chimeric protein; domain SW | 91.78 | |
| 1v86_A | 95 | DNA segment, CHR 7, wayne state university 128, ex | 91.77 | |
| 3m62_B | 106 | UV excision repair protein RAD23; armadillo-like r | 91.48 | |
| 2dzk_A | 109 | UBX domain-containing protein 2; ubiquitin-like fo | 91.33 | |
| 2cr5_A | 109 | Reproduction 8; UBX domain, D0H8S2298E protein, st | 91.23 | |
| 2io0_B | 91 | Small ubiquitin-related modifier 2 precursor; SUMO | 90.93 | |
| 2faz_A | 78 | Ubiquitin-like containing PHD and ring finger DOM | 90.75 | |
| 1we7_A | 115 | SF3A1 protein; structural genomics, ubiquitin-like | 90.55 | |
| 1uel_A | 95 | HHR23B, UV excision repair protein RAD23 homolog B | 90.23 | |
| 1v2y_A | 105 | 3300001G02RIK protein; hypothetical protein, ubiqu | 89.75 | |
| 2kzr_A | 86 | Ubiquitin thioesterase OTU1; structural genomics, | 89.71 | |
| 1wm3_A | 72 | Ubiquitin-like protein SMT3B; ubiquitin fold, half | 89.56 | |
| 3rt3_B | 159 | Ubiquitin-like protein ISG15; ubiquitin-like domai | 89.55 | |
| 1ttn_A | 106 | DC-UBP, dendritic cell-derived ubiquitin-like prot | 89.54 | |
| 3u30_A | 172 | Ubiquitin, linear DI-ubiquitin; immune system; 2.4 | 89.37 | |
| 2pjh_A | 80 | Protein NPL4, nuclear protein localization protein | 89.3 | |
| 3l0w_B | 169 | Monoubiquitinated proliferating cell nuclear antig | 88.88 | |
| 2eke_C | 106 | Ubiquitin-like protein SMT3; UBC9, SUMO binding mo | 88.78 | |
| 1wj4_A | 124 | KIAA0794 protein; UBX domain, beta-grAsp fold, str | 88.63 | |
| 1v5t_A | 90 | 8430435I17RIK protein; hypothetical protein, ubiqu | 88.5 | |
| 2io1_B | 94 | Small ubiquitin-related modifier 3 precursor; SUMO | 87.9 | |
| 2d07_B | 93 | Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho | 87.49 | |
| 2k8h_A | 110 | Small ubiquitin protein; SUMO, post-translational | 87.16 | |
| 1wf9_A | 107 | NPL4 family protein; beta-grAsp fold like domain, | 86.97 | |
| 1wgd_A | 93 | Homocysteine-responsive endoplasmic reticulum- res | 86.78 | |
| 1wz0_A | 104 | Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li | 86.62 | |
| 3b08_A | 152 | Polyubiquitin-C, ubiquitin; protein complex, signa | 86.61 | |
| 3rt3_B | 159 | Ubiquitin-like protein ISG15; ubiquitin-like domai | 86.57 | |
| 3kyd_D | 115 | Small ubiquitin-related modifier 1; SUMO, thioeste | 85.32 | |
| 1wgg_A | 96 | Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti | 85.05 | |
| 2lxa_A | 87 | Ubiquitin-like protein MDY2; ubiquitin-like domain | 84.34 | |
| 1x1m_A | 107 | Ubiquitin-like protein SB132; structural genomics, | 84.25 | |
| 2jxx_A | 97 | Nfatc2-interacting protein; nuclear factor of acti | 83.8 | |
| 3b08_A | 152 | Polyubiquitin-C, ubiquitin; protein complex, signa | 83.8 | |
| 3goe_A | 82 | DNA repair protein RAD60; SUMO-like domain, sumoyl | 83.68 | |
| 4a20_A | 98 | Ubiquitin-like protein MDY2; protein binding, GET- | 83.14 | |
| 1wia_A | 95 | Hypothetical ubiquitin-like protein (riken cDNA 20 | 82.82 | |
| 3b1l_X | 76 | E3 ubiquitin-protein ligase parkin; proteasome, AL | 82.9 | |
| 3u5e_m | 128 | 60S ribosomal protein L40; translation, ribosome, | 81.52 | |
| 3u30_A | 172 | Ubiquitin, linear DI-ubiquitin; immune system; 2.4 | 80.91 | |
| 2dzm_A | 100 | FAS-associated factor 1; ubiquitin-like domain, HF | 80.71 | |
| 3ai5_A | 307 | Yeast enhanced green fluorescent protein, ubiquit; | 80.06 |
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-79 Score=681.90 Aligned_cols=358 Identities=60% Similarity=1.063 Sum_probs=321.8
Q ss_pred CCCcccceecCCCchhHHHHHHHHhCChHHHHHHHhc-CccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHH
Q 003370 213 EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFK 291 (825)
Q Consensus 213 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~ 291 (825)
..+|++||.|+||||||||+||||+|+|+|+++|+.. +...++..++.+..+.++.+|+.|+.+||.+....++|..|+
T Consensus 4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~ 83 (367)
T 2y6e_A 4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFK 83 (367)
T ss_dssp CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHH
T ss_pred CCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHH
Confidence 4689999999999999999999999999999999987 667778888888889999999999999999888999999999
Q ss_pred HHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEEE
Q 003370 292 GKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYK 371 (825)
Q Consensus 292 ~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~~ 371 (825)
.++++..+.|.+++||||||||.+|||.||+++++..++++.+.++.++.++.+.|.+.|..+..++.|+|.++|+|+++
T Consensus 84 ~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~ 163 (367)
T 2y6e_A 84 TQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFK 163 (367)
T ss_dssp HHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 372 STLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 372 s~i~C~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
++++|..|+++|.++|+|++|+||||....+.+.+.+
T Consensus 164 s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~------------------------------------------- 200 (367)
T 2y6e_A 164 STLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPM------------------------------------------- 200 (367)
T ss_dssp EEEECTTTCCEEEEEEEESSEEEECCC-----------------------------------------------------
T ss_pred eeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeee-------------------------------------------
Confidence 9999999999999999999999999865321110000
Q ss_pred EEeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEecCCCCC
Q 003370 452 AEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLS 531 (825)
Q Consensus 452 ~e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 531 (825)
T Consensus 201 -------------------------------------------------------------------------------- 200 (367)
T 2y6e_A 201 -------------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCCcc
Q 003370 532 GADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQK 611 (825)
Q Consensus 532 ~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (825)
T Consensus 201 -------------------------------------------------------------------------------- 200 (367)
T 2y6e_A 201 -------------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCccccccc
Q 003370 612 DSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHR 691 (825)
Q Consensus 612 ~~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~ 691 (825)
|.+. ......++|++||+.|+++|.|+++|.|+|++|++++
T Consensus 201 ---------------~~~~------------------------~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~ 241 (367)
T 2y6e_A 201 ---------------LQPQ------------------------KKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQ 241 (367)
T ss_dssp ------------------------------------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEE
T ss_pred ---------------eccc------------------------cccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCCc
Confidence 0000 0002346899999999999999999999999999999
Q ss_pred eEEEEEEeeeCCCeEEEEEeeeEeecccccccceeeeccCcccccccccccCCCCceEEEEEEEEEeecCCCCCeEEEEE
Q 003370 692 QATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYA 771 (825)
Q Consensus 692 ~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVv~H~G~l~gGHYtAy~ 771 (825)
.|+|++.|+++|+||+||||||.|+++.+.|+++.|+||++.|||++|+..+......|+|+|||+|+|++++|||+||+
T Consensus 242 ~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~~ 321 (367)
T 2y6e_A 242 QATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGAMGVGHYTAYA 321 (367)
T ss_dssp CCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECSSSSCEEEEEE
T ss_pred eEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCCCCCCCeeeEEE
Confidence 99999999999999999999999998888999999999987899999999877677899999999999999999999999
Q ss_pred eeCCCCcEEEeCCCceeecCcCcccCCCeEEEEEEEecCCc
Q 003370 772 KLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSKT 812 (825)
Q Consensus 772 k~~~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~R~~~~~ 812 (825)
|+..+++||+|||+.|+++++++|.+.+||||||+|++.+.
T Consensus 322 ~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~~ 362 (367)
T 2y6e_A 322 KNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEF 362 (367)
T ss_dssp ECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC--
T ss_pred EcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCCC
Confidence 98668999999999999999999999999999999998653
|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} | Back alignment and structure |
|---|
| >4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A | Back alignment and structure |
|---|
| >3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus} | Back alignment and structure |
|---|
| >2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927} | Back alignment and structure |
|---|
| >2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... | Back alignment and structure |
|---|
| >1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A | Back alignment and structure |
|---|
| >3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A | Back alignment and structure |
|---|
| >2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A | Back alignment and structure |
|---|
| >1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B | Back alignment and structure |
|---|
| >1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B | Back alignment and structure |
|---|
| >3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A | Back alignment and structure |
|---|
| >1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B | Back alignment and structure |
|---|
| >3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I | Back alignment and structure |
|---|
| >3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C | Back alignment and structure |
|---|
| >1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B | Back alignment and structure |
|---|
| >2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S | Back alignment and structure |
|---|
| >4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A | Back alignment and structure |
|---|
| >3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A | Back alignment and structure |
|---|
| >2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A | Back alignment and structure |
|---|
| >3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A | Back alignment and structure |
|---|
| >2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A | Back alignment and structure |
|---|
| >2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A | Back alignment and structure |
|---|
| >1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A* | Back alignment and structure |
|---|
| >3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} | Back alignment and structure |
|---|
| >1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A | Back alignment and structure |
|---|
| >2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2 | Back alignment and structure |
|---|
| >2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A | Back alignment and structure |
|---|
| >1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B | Back alignment and structure |
|---|
| >3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A | Back alignment and structure |
|---|
| >1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} | Back alignment and structure |
|---|
| >2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B | Back alignment and structure |
|---|
| >2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2 | Back alignment and structure |
|---|
| >1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A | Back alignment and structure |
|---|
| >2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A | Back alignment and structure |
|---|
| >2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} | Back alignment and structure |
|---|
| >1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B | Back alignment and structure |
|---|
| >3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A | Back alignment and structure |
|---|
| >3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B | Back alignment and structure |
|---|
| >3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A* | Back alignment and structure |
|---|
| >4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A | Back alignment and structure |
|---|
| >1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A | Back alignment and structure |
|---|
| >3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p | Back alignment and structure |
|---|
| >3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} | Back alignment and structure |
|---|
| >2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 825 | ||||
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 9e-45 | |
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 5e-41 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 2e-39 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 8e-39 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 2e-36 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 5e-21 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 6e-22 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 1e-21 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 0.004 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 2e-20 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 5e-20 |
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 8 species: Human (Homo sapiens) [TaxId: 9606]
Score = 162 bits (411), Expect = 9e-45
Identities = 91/190 (47%), Positives = 125/190 (65%), Gaps = 1/190 (0%)
Query: 216 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLL 274
L GL+NLGNTC+MNS LQCL + P LA YF + Y D+IN N LG GE+A FG ++
Sbjct: 14 ALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIM 73
Query: 275 RKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIE 334
+ LW+ ++P+ FK + + QF+GY+Q DSQELL FL+DGLHEDLN+ + +
Sbjct: 74 KALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYK 133
Query: 335 MKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTL 394
+++ D + A W+ HK N+S+IV +FQGQ+KST+ C C K S TF+ FMYL+L
Sbjct: 134 EENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSL 193
Query: 395 PLPSTVTRTM 404
PL ST T+
Sbjct: 194 PLASTSKCTL 203
|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 825 | |||
| d1nbfa_ | 347 | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU | 100.0 | |
| d2gfoa1 | 348 | Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho | 100.0 | |
| d2hd5a1 | 336 | Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum | 100.0 | |
| d2ayna1 | 383 | Ubiquitin carboxyl-terminal hydrolase 14 {Human (H | 100.0 | |
| d1vjva_ | 397 | Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y | 100.0 | |
| d1t0ya_ | 90 | Ubiquitin-like domain of tubulin folding cofactor | 96.36 | |
| d1wjna_ | 97 | Tubulin-folding protein TbcE {Mouse (Mus musculus) | 96.29 | |
| d1v6ea_ | 95 | Ubiquitin-like domain of tubulin folding cofactor | 95.66 | |
| d1w6va1 | 120 | Ubiquitin carboxyl-terminal hydrolase 15 {Human (H | 95.62 | |
| d1yqba1 | 84 | Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | 95.56 | |
| d1wxva1 | 81 | Bag-family molecular chaperone regulator-1 {Human | 95.19 | |
| d1j8ca_ | 103 | Ubiquitin-like N-terminal domain of PLIC-2 {Human | 95.15 | |
| d1h8ca_ | 82 | Fas-associated factor 1, Faf1 {Human (Homo sapiens | 95.08 | |
| d1euvb_ | 79 | SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy | 94.64 | |
| d2bwfa1 | 73 | DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.5 | |
| d1ogwa_ | 76 | Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | 94.42 | |
| d1wx8a1 | 83 | 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] | 94.17 | |
| d1m94a_ | 73 | Ubiquitin-like modifier protein hub1 {Baker's yeas | 94.11 | |
| d1v5oa_ | 102 | 1700011n24rik protein {Mouse (Mus musculus) [TaxId | 94.01 | |
| d1wh3a_ | 87 | 2'-5'-oligoadenylate synthetase-like protein, OASL | 93.99 | |
| d1zkha1 | 86 | Splicing factor 3 subunit 1, C-terminal domain {Hu | 93.99 | |
| d1v86a_ | 95 | hypothetical D7wsu128e protein {Mouse (Mus musculu | 93.83 | |
| d1z2ma2 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 93.8 | |
| d1bt0a_ | 73 | Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI | 93.56 | |
| d2c9wb1 | 103 | Elongin B {Human (Homo sapiens) [TaxId: 9606]} | 93.47 | |
| d1we6a_ | 111 | Splicing factor 3 subunit 1, C-terminal domain {Th | 93.14 | |
| d1wjua_ | 100 | NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens | 92.89 | |
| d2cr5a1 | 96 | UBX domain-containing protein 6 (Reproduction 8) { | 92.74 | |
| d1uh6a_ | 100 | Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu | 92.6 | |
| d1z2ma1 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 92.55 | |
| d1ttna1 | 80 | Dendritic cell-derived ubiquitin-like protein {Hum | 92.48 | |
| d1oqya4 | 77 | Ubiquitin-like domain of Rad23 homolog A (Hhr23a) | 92.43 | |
| d1wy8a1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 92.11 | |
| d2zeqa1 | 78 | Ubiquitin-like domain of parkin {Mouse (Mus muscul | 91.94 | |
| d2uyzb1 | 77 | SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax | 91.81 | |
| d1uela_ | 95 | Ubiquitin-like domain of Rad23 homolog B (Hhr23B) | 91.59 | |
| d1v5ta_ | 90 | 8430435i17rik protein {Mouse (Mus musculus) [TaxId | 91.29 | |
| d1wj4a_ | 124 | Hypothetical protein KIAA0794 {Human (Homo sapiens | 90.92 | |
| d1wx9a1 | 73 | Large proline-rich protein BAT3 {Human (Homo sapie | 89.44 | |
| d2faza1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 89.15 | |
| d1i42a_ | 89 | p47 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.25 | |
| d1wxma1 | 73 | A-Raf proto-oncogene serine/threonine-protein kina | 88.24 | |
| d1wgha_ | 116 | Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu | 88.05 | |
| d1v2ya_ | 105 | Ubiquitin-like protein 3300001g02rik {Mouse (Mus m | 87.9 | |
| d1c1yb_ | 77 | c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]} | 87.74 | |
| d1wm3a_ | 72 | SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} | 86.77 | |
| d1wgga_ | 96 | Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M | 85.0 | |
| d1wiaa_ | 95 | Ubiquitin-like protein bab25500 (2010008E23Rik) {M | 84.87 |
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.5e-59 Score=511.60 Aligned_cols=298 Identities=26% Similarity=0.419 Sum_probs=255.4
Q ss_pred CCCcccceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHH
Q 003370 213 EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKG 292 (825)
Q Consensus 213 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~ 292 (825)
+.+|++||.|+||||||||+||||+++|+|+++++..-.. .......+..+|+.||..|+.+. .++.|..+..
T Consensus 2 ~~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~------~~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~~~~ 74 (347)
T d1nbfa_ 2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE------GDDSSKSVPLALQRVFYELQHSD-KPVGTKKLTK 74 (347)
T ss_dssp CSSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCT------TCCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHH
T ss_pred CCCCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCcc------CCcccchHHHHHHHHHHHHhcCC-CCcChHHHHH
Confidence 4689999999999999999999999999999999764111 11223468889999999998854 5788888887
Q ss_pred HHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEEEE
Q 003370 293 KLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKS 372 (825)
Q Consensus 293 ~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~~s 372 (825)
.+. .+.|..+.|||||||+.+||+.|++++.... ..++|.++|.|++.+
T Consensus 75 ~~~--~~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~-----------------------------~~~~i~~lF~g~~~~ 123 (347)
T d1nbfa_ 75 SFG--WETLDSFMQHDVQELCRVLLDNVENKMKGTC-----------------------------VEGTIPKLFRGKMVS 123 (347)
T ss_dssp HTT--CCGGGGGSCBCHHHHHHHHHHHHHHHHTTST-----------------------------TTTHHHHHHCEEEEE
T ss_pred hhc--hhhcchHHHHHHHHHHHHHHHHHHHHHhhcc-----------------------------ccccccceeceEEEE
Confidence 775 3568899999999999999999999885422 235799999999999
Q ss_pred EEEcCCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeEE
Q 003370 373 TLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLA 452 (825)
Q Consensus 373 ~i~C~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~ 452 (825)
.++|..|++.+.++|+|+.|+|++|..
T Consensus 124 ~~~C~~C~~~s~~~e~f~~l~L~i~~~----------------------------------------------------- 150 (347)
T d1nbfa_ 124 YIQCKEVDYRSDRREDYYDIQLSIKGK----------------------------------------------------- 150 (347)
T ss_dssp EEEESSSCCEEEEEEEESSEEEECTTC-----------------------------------------------------
T ss_pred eEEeCCccceeeeeccccccccccccc-----------------------------------------------------
Confidence 999999999999999999999998621
Q ss_pred EeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEecCCCCCH
Q 003370 453 EVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSG 532 (825)
Q Consensus 453 e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~ 532 (825)
T Consensus 151 -------------------------------------------------------------------------------- 150 (347)
T d1nbfa_ 151 -------------------------------------------------------------------------------- 150 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCCccC
Q 003370 533 ADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKD 612 (825)
Q Consensus 533 ~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (825)
T Consensus 151 -------------------------------------------------------------------------------- 150 (347)
T d1nbfa_ 151 -------------------------------------------------------------------------------- 150 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCccccccce
Q 003370 613 SILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQ 692 (825)
Q Consensus 613 ~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~ 692 (825)
.++.+||+.++.+|.|.+++.|.|..| +.+.
T Consensus 151 ------------------------------------------------~~~~~~l~~~~~~e~l~~~~~~~~~~~-~~~~ 181 (347)
T d1nbfa_ 151 ------------------------------------------------KNIFESFVDYVAVEQLDGDNKYDAGEH-GLQE 181 (347)
T ss_dssp ------------------------------------------------CBHHHHHHHHTCCEEECGGGCEECSTT-CEEC
T ss_pred ------------------------------------------------cchhhhHHhhcchheeccccccccccC-ccee
Confidence 157889999999999998887777655 5677
Q ss_pred EEEEEEeeeCCCeEEEEEeeeEeec--ccccccceeeeccCcccccccccccCCC-CceEEEEEEEEEeecCCCCCeEEE
Q 003370 693 ATKKLDLWMLPDVLVFHLKRFSYSR--YLKNKLDTFVNFPILNLDLSKYMKSKDG-ESYVYDLFAISNHYGGLGGGHYTA 769 (825)
Q Consensus 693 A~Kk~~i~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPl~~LDls~~~~~~~~-~~~~YdL~AVv~H~G~l~gGHYtA 769 (825)
|.|++.|+++|+||+||||||.|+. ....|+++.|.|| +.|||++|+..... ....|+|+|||+|.|.+.+|||+|
T Consensus 182 ~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~ 260 (347)
T d1nbfa_ 182 AEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVV 260 (347)
T ss_dssp EEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEEEETTEEEEEE
T ss_pred ccEEEEEEecCChheEeeeeeeeccccCcccccCceEeee-eeeccccccccccccCccceeeEEEEEecCCCCCCEEEE
Confidence 9999999999999999999999974 4567999999999 58999999976543 457899999999999889999999
Q ss_pred EEeeCCCCcEEEeCCCceeecCcCcccC---------------CCeEEEEEEEecCC
Q 003370 770 YAKLIDENRWYHFDDSHVSPVSEGDIKT---------------SAAYVLFYRRVKSK 811 (825)
Q Consensus 770 y~k~~~~~~Wy~fnDs~V~~v~~~~v~s---------------~~AYvLFY~R~~~~ 811 (825)
|+|+..+++||.|||+.|+++++++|.. .+||||||+|++..
T Consensus 261 ~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~~~~ 317 (347)
T d1nbfa_ 261 YLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKL 317 (347)
T ss_dssp EECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEEEGGGH
T ss_pred eeecCCCCEEEEEECCceEECCHHHHHHhhcCCCccccccCCCCCEEEEEEEecCch
Confidence 9998778999999999999999988852 46999999999743
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| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
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| >d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1w6va1 d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hydrolase 15 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} | Back information, alignment and structure |
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| >d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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