Citrus Sinensis ID: 003377
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 824 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZSM8 | 856 | Histone-lysine N-methyltr | yes | no | 0.942 | 0.907 | 0.565 | 0.0 | |
| P93831 | 902 | Histone-lysine N-methyltr | no | no | 0.936 | 0.855 | 0.450 | 0.0 | |
| Q8S4P6 | 931 | Histone-lysine N-methyltr | N/A | no | 0.929 | 0.822 | 0.448 | 0.0 | |
| Q8S4P4 | 895 | Histone-lysine N-methyltr | N/A | no | 0.436 | 0.402 | 0.784 | 1e-172 | |
| Q8S4P5 | 894 | Histone-lysine N-methyltr | N/A | no | 0.436 | 0.402 | 0.776 | 1e-169 | |
| O65312 | 689 | Histone-lysine N-methyltr | no | no | 0.404 | 0.483 | 0.534 | 1e-107 | |
| Q28D84 | 748 | Histone-lysine N-methyltr | yes | no | 0.367 | 0.405 | 0.424 | 4e-69 | |
| Q98SM3 | 748 | Histone-lysine N-methyltr | N/A | no | 0.367 | 0.405 | 0.421 | 5e-69 | |
| Q61188 | 746 | Histone-lysine N-methyltr | yes | no | 0.367 | 0.406 | 0.430 | 8e-69 | |
| Q4R381 | 746 | Histone-lysine N-methyltr | N/A | no | 0.367 | 0.406 | 0.427 | 1e-68 |
| >sp|Q9ZSM8|EZA1_ARATH Histone-lysine N-methyltransferase EZA1 OS=Arabidopsis thaliana GN=EZA1 PE=2 SV=1 | Back alignment and function desciption |
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Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/840 (56%), Positives = 582/840 (69%), Gaps = 63/840 (7%)
Query: 30 KLNQLKKQVQAERVVSVKDKIEKNRKKIENDISQLLSTTSRKSVIFAMDNGFGNM----- 84
+L++LK+++Q ERV S+K+K E NRKK++ +S S S ++ A DNG NM
Sbjct: 35 RLSELKRKIQGERVRSIKEKFEANRKKVDAHVSPFSSAASSRAT--AEDNGNSNMLSSRM 92
Query: 85 --PLCKYSGFPQGLGDRDYVNSHEVVLSTSSKLSHVQKIPPYTTWIFLDKNQRMAEDQSV 142
PLCK +GF G+GDRDYV + +V+ S S KL ++IPPYTTWIFLD+NQRMAEDQSV
Sbjct: 93 RMPLCKLNGFSHGVGDRDYVPTKDVI-SASVKLPIAERIPPYTTWIFLDRNQRMAEDQSV 151
Query: 143 VGRRRIYYDQHGSEALVCSDSEEDIIEPEEEKHEFSDGEDRILWTVFEEHGLGEEVINAV 202
VGRR+IYY+QHG E L+CSDSEE+ EEEK EFS+GED I+W + +E+G+GEEV +A+
Sbjct: 152 VGRRQIYYEQHGGETLICSDSEEEPEP-EEEKREFSEGEDSIIWLIGQEYGMGEEVQDAL 210
Query: 203 SQFIGIATSEVQDRYSTLKEKYDGKNLKEFEDAGHERGIALEKSLSAALDSFDNLFCRRC 262
Q + + S++ +RY+ LK K D +N +EF ++G + GI+LEK L AALDSFDNLFCRRC
Sbjct: 211 CQLLSVDASDILERYNELKLK-DKQNTEEFSNSGFKLGISLEKGLGAALDSFDNLFCRRC 269
Query: 263 LSRAVQDTVEG------SAGNISSIITNTEGTLLHCNA----------EVPGAHSDIMAG 306
L + G SA ++ EG C+ EVP S+ +
Sbjct: 270 L--VFDCRLHGCSQPLISASEKQPYWSDYEGDRKPCSKHCYLQLKAVREVPETCSNFASK 327
Query: 307 ERCNSKRVLPVTSEAVDS-------SEVAIGNENTDTSMQSLGKRKALELNDSVKVFDEI 359
K S+AV S S V++ E TD ++++ +E ++ E+
Sbjct: 328 A--EEKASEEECSKAVSSDVPHAAASGVSLQVEKTDIGIKNVDSSSGVEQEHGIRGKREV 385
Query: 360 E--------ESLNKKQKKLLPLDVLTASSDGIPRPD-----TKSGHHVGAINDNELQMTS 406
+L+ K++K D + + +P D TK G DN++ S
Sbjct: 386 PILKDSNDLPNLSNKKQKTAASDTKMSFVNSVPSLDQALDSTKGDQ--GGTTDNKVNRDS 443
Query: 407 KNTIKKSVSAKVVSHNNIEHNIMDGAKDVNK--EPEMKQSFSKGELPEGVLCSSEWKPIE 464
+ AK V ++++ DG + + + E+ E S+EW PIE
Sbjct: 444 E------ADAKEVGEPIPDNSVHDGGSSICQPHHGSGNGAIIIAEMSETSRPSTEWNPIE 497
Query: 465 KELYLKGVEIFGRNSCLIARNLLSGLKTCMEVSTYMRDSSSSMPHKSVAPSSFLEETVKV 524
K+LYLKGVEIFGRNSCLIARNLLSGLKTC++VS YMR++ S+ +S P+ L++ +
Sbjct: 498 KDLYLKGVEIFGRNSCLIARNLLSGLKTCLDVSNYMRENEVSVFRRSSTPNLLLDDG-RT 556
Query: 525 DTDYAEQEMPARPRLLRRRGRARKLKYSWKSAGHPSIWKRIADGKNQSCKQYTPCGCQSM 584
D E+P R RL RR+G+ RKLKYS KSAGHPS+WKRIA GKNQSCKQYTPCGC SM
Sbjct: 557 DPGNDNDEVPPRTRLFRRKGKTRKLKYSTKSAGHPSVWKRIAGGKNQSCKQYTPCGCLSM 616
Query: 585 CGKQCPCLHNGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNC 644
CGK CPCL N TCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNC
Sbjct: 617 CGKDCPCLTNETCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNC 676
Query: 645 WVSCGDGSLGEPPKRGDGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEY 704
WVSCGDGSLGE P+RG+GQCGNMRLLLRQQQRILL KSDVAGWGAFLKNSVSKN+YLGEY
Sbjct: 677 WVSCGDGSLGEAPRRGEGQCGNMRLLLRQQQRILLGKSDVAGWGAFLKNSVSKNEYLGEY 736
Query: 705 TGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKGDKLKFANHSSNPNCFAKVML 764
TGELISH EADKRGKIYDRANSSFLFDLNDQYVLDA RKGDKLKFANHS+ PNC+AKVM
Sbjct: 737 TGELISHHEADKRGKIYDRANSSFLFDLNDQYVLDAQRKGDKLKFANHSAKPNCYAKVMF 796
Query: 765 VAGDHRVGIFAKEHIEASEELFYDYRYGPDQAPAWARKPEGSKREDSSVSQGRAKKHQSH 824
VAGDHRVGIFA E IEASEELFYDYRYGPDQAP WARKPEGSK++DS+++ RA+KHQSH
Sbjct: 797 VAGDHRVGIFANERIEASEELFYDYRYGPDQAPVWARKPEGSKKDDSAITHRRARKHQSH 856
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Polycomb group (PcG) protein. Catalytic subunit of some PcG multiprotein complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target genes. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3 |
| >sp|P93831|CLF_ARATH Histone-lysine N-methyltransferase CLF OS=Arabidopsis thaliana GN=CLF PE=1 SV=2 | Back alignment and function description |
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| >sp|Q8S4P6|EZ1_MAIZE Histone-lysine N-methyltransferase EZ1 OS=Zea mays GN=EZ1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8S4P4|EZ3_MAIZE Histone-lysine N-methyltransferase EZ3 OS=Zea mays GN=EZ3 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8S4P5|EZ2_MAIZE Histone-lysine N-methyltransferase EZ2 OS=Zea mays GN=EZ2 PE=2 SV=1 | Back alignment and function description |
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| >sp|O65312|MEDEA_ARATH Histone-lysine N-methyltransferase MEDEA OS=Arabidopsis thaliana GN=MEA PE=1 SV=1 | Back alignment and function description |
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| >sp|Q28D84|EZH2_XENTR Histone-lysine N-methyltransferase EZH2 OS=Xenopus tropicalis GN=ezh2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q98SM3|EZH2A_XENLA Histone-lysine N-methyltransferase EZH2 OS=Xenopus laevis GN=ezh2-a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q61188|EZH2_MOUSE Histone-lysine N-methyltransferase EZH2 OS=Mus musculus GN=Ezh2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q4R381|EZH2_MACFA Histone-lysine N-methyltransferase EZH2 OS=Macaca fascicularis GN=EZH2 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 824 | ||||||
| 255548445 | 884 | enhancer of zeste, ezh, putative [Ricinu | 0.996 | 0.928 | 0.642 | 0.0 | |
| 224128312 | 812 | SET domain protein [Populus trichocarpa] | 0.950 | 0.964 | 0.684 | 0.0 | |
| 225437573 | 906 | PREDICTED: histone-lysine N-methyltransf | 0.998 | 0.908 | 0.651 | 0.0 | |
| 356501867 | 868 | PREDICTED: histone-lysine N-methyltransf | 0.996 | 0.945 | 0.597 | 0.0 | |
| 356534774 | 869 | PREDICTED: histone-lysine N-methyltransf | 0.989 | 0.937 | 0.592 | 0.0 | |
| 449515891 | 889 | PREDICTED: LOW QUALITY PROTEIN: histone- | 0.969 | 0.898 | 0.589 | 0.0 | |
| 449469026 | 889 | PREDICTED: histone-lysine N-methyltransf | 0.969 | 0.898 | 0.590 | 0.0 | |
| 357442237 | 829 | Histone-lysine N-methyltransferase EZA1 | 0.924 | 0.919 | 0.548 | 0.0 | |
| 34393752 | 814 | PHCLF3 [Petunia x hybrida] | 0.935 | 0.947 | 0.582 | 0.0 | |
| 350536471 | 829 | EZ1 protein [Solanum lycopersicum] gi|15 | 0.972 | 0.966 | 0.584 | 0.0 |
| >gi|255548445|ref|XP_002515279.1| enhancer of zeste, ezh, putative [Ricinus communis] gi|223545759|gb|EEF47263.1| enhancer of zeste, ezh, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1102 bits (2849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/887 (64%), Positives = 672/887 (75%), Gaps = 66/887 (7%)
Query: 1 MVSRASDSSSKSRKSYSEQSNDGLGNLTYKLNQLKKQVQAERVVSVKDKIEKNRKKIEND 60
M+S+++DS SK RKS+ EQSN+ +GNL+YK+N LKKQ+QAER+ S+K+K+E NRKK+E+D
Sbjct: 1 MLSKSTDSVSKLRKSHGEQSNECIGNLSYKMNLLKKQIQAERIFSIKEKVENNRKKLESD 60
Query: 61 ISQLLSTTSRKSVIFAMDNGFGNM--PLCKYSGFPQGLGDRDYVNSHEVVLSTSSKLSHV 118
++Q++ +SR + F + PLCKYSGF QG GD+DY+N HEV+ TS+K+ V
Sbjct: 61 VAQIMLASSRIDALNIGQTNFSRIGSPLCKYSGFAQGSGDKDYINGHEVIPWTSTKIPFV 120
Query: 119 QKIPPYTTWIFLDKNQRMAEDQSVVGRRRIYYDQHGSEALVCSDSEEDIIEPEEEKHEFS 178
++IPPYTTWIFLD+NQRMAEDQSVVGRRRIYYDQ+G+EAL+CSDSEEDI EPEEEKH+FS
Sbjct: 121 ERIPPYTTWIFLDRNQRMAEDQSVVGRRRIYYDQNGNEALICSDSEEDIAEPEEEKHDFS 180
Query: 179 DGEDRILWTVFEEHGLGEEVINAVSQFIGIATSEVQDRYSTLKEKYDG-KNLKEFEDAGH 237
+GEDRILW VF+EHGL EEV+N VSQFIG+ S++Q+R S LKE++D +N K+ D+
Sbjct: 181 EGEDRILWMVFQEHGLAEEVLNIVSQFIGVPISDIQERCSMLKERFDEEQNGKDSGDSAS 240
Query: 238 ERGIALEKSLSAALDSFDNLFCRRCLS--------------------------------- 264
E+GI+LEKSLSAALDSFDNLFCRRCL
Sbjct: 241 EKGISLEKSLSAALDSFDNLFCRRCLLFDCRLHGCSQALINPSEKQPYWSEYEDDRKPCS 300
Query: 265 -------RAVQDTVEGS---AGNISSIITNTEG--TLLHCNAEVPGAH---SDIMAGERC 309
+ V+D E S A N + EG T NA+ P +D+ +
Sbjct: 301 DQCFLRLKVVRDLPESSVNCALNRMKTASLEEGKKTAGASNAQEPSGADDGADLSKDDSY 360
Query: 310 NSKRVLPVTSEAVDSSEVAIGNENTDT-----SMQSLGKRKA-----LELNDSVKVFDEI 359
S++ + V S + SE + + N DT + + + KRK ++L+DS V ++
Sbjct: 361 ISQKEISVASGTLCHSEASEAS-NLDTCAMIHNQEHMRKRKEPELTNVDLDDSTPVPSDL 419
Query: 360 EESLNKKQKKLLPLDVLTASSDGIPRPDTKSGHHVGAINDNELQMTSKNTIKK--SVSAK 417
S NKKQK+LL D + + I D +G + +ELQ+T+KNT+ ++K
Sbjct: 420 HNSSNKKQKRLLGSDAASKDIENISSLDDLAGTE-KTTDTSELQITTKNTLNNPSEYASK 478
Query: 418 VVSHNNIEHNIMDGAKDVNKEPEMKQSFSKGELPEGVLCSSEWKPIEKELYLKGVEIFGR 477
+ + IE I+D A D K PE+ QS S EGVL S WKPIEKELYLKGVEIFG+
Sbjct: 479 EIVSSAIE-KILDEANDATKGPELIQSSSTDRQLEGVLSRSRWKPIEKELYLKGVEIFGK 537
Query: 478 NSCLIARNLLSGLKTCMEVSTYMRDSSSSMPHKSVAPSSFLEETVKVDTDYAEQEMPARP 537
NSCLIARNLLSGLKTCMEVS YM DS ++PHKSVAPSS L++ K DTDY EQE+ R
Sbjct: 538 NSCLIARNLLSGLKTCMEVSNYMCDSGVTVPHKSVAPSSILDDNGKTDTDYTEQEISTRS 597
Query: 538 RLLRRRGRARKLKYSWKSAGHPSIWKRIADGKNQSCKQYTPCGCQSMCGKQCPCLHNGTC 597
RLLR+RGR RKLKYSWKSAGHP+ WKRIADGKNQSCKQYTPCGCQSMCGKQCPCLHNGTC
Sbjct: 598 RLLRKRGRTRKLKYSWKSAGHPASWKRIADGKNQSCKQYTPCGCQSMCGKQCPCLHNGTC 657
Query: 598 CEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPP 657
CEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGD SLGEPP
Sbjct: 658 CEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDSSLGEPP 717
Query: 658 KRGDGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKR 717
KRGDGQCGNMRLLLRQQQRILLAKS++AGWGAFLKN V+KNDYLGEYTGELISHREADKR
Sbjct: 718 KRGDGQCGNMRLLLRQQQRILLAKSNIAGWGAFLKNPVNKNDYLGEYTGELISHREADKR 777
Query: 718 GKIYDRANSSFLFDLNDQYVLDAYRKGDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKE 777
GKIYDRANSSFLFDLN+QYVLDAYRKGDKLKFANHSSNPNC+AKVMLVAGDHRVGIFAKE
Sbjct: 778 GKIYDRANSSFLFDLNEQYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIFAKE 837
Query: 778 HIEASEELFYDYRYGPDQAPAWARKPEGSKREDSSVSQGRAKKHQSH 824
HIEASEELFYDYRYGPDQAPAWARKPEGS+R++S+VSQGRAKKHQSH
Sbjct: 838 HIEASEELFYDYRYGPDQAPAWARKPEGSRRDESTVSQGRAKKHQSH 884
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128312|ref|XP_002320296.1| SET domain protein [Populus trichocarpa] gi|222861069|gb|EEE98611.1| SET domain protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225437573|ref|XP_002270605.1| PREDICTED: histone-lysine N-methyltransferase EZA1-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356501867|ref|XP_003519745.1| PREDICTED: histone-lysine N-methyltransferase EZA1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356534774|ref|XP_003535927.1| PREDICTED: histone-lysine N-methyltransferase EZA1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449515891|ref|XP_004164981.1| PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase EZA1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449469026|ref|XP_004152222.1| PREDICTED: histone-lysine N-methyltransferase EZA1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357442237|ref|XP_003591396.1| Histone-lysine N-methyltransferase EZA1 [Medicago truncatula] gi|355480444|gb|AES61647.1| Histone-lysine N-methyltransferase EZA1 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|34393752|dbj|BAC84952.1| PHCLF3 [Petunia x hybrida] | Back alignment and taxonomy information |
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| >gi|350536471|ref|NP_001234760.1| EZ1 protein [Solanum lycopersicum] gi|156789072|gb|ABU96077.1| EZ1 [Solanum lycopersicum] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 824 | ||||||
| TAIR|locus:2132178 | 856 | SWN "SWINGER" [Arabidopsis tha | 0.593 | 0.571 | 0.605 | 1.1e-227 | |
| TAIR|locus:2005501 | 902 | CLF "CURLY LEAF" [Arabidopsis | 0.663 | 0.606 | 0.483 | 1.4e-170 | |
| TAIR|locus:2196110 | 689 | MEA "MEDEA" [Arabidopsis thali | 0.413 | 0.494 | 0.508 | 9.3e-121 | |
| ZFIN|ZDB-GENE-050114-1 | 749 | ezh1 "enhancer of zeste homolo | 0.287 | 0.316 | 0.486 | 6.7e-76 | |
| UNIPROTKB|E1BD02 | 751 | EZH2 "Uncharacterized protein" | 0.280 | 0.307 | 0.491 | 4e-68 | |
| UNIPROTKB|E2R6Q2 | 751 | EZH2 "Uncharacterized protein" | 0.280 | 0.307 | 0.491 | 4e-68 | |
| UNIPROTKB|Q15910 | 746 | EZH2 "Histone-lysine N-methylt | 0.280 | 0.309 | 0.491 | 4e-68 | |
| UNIPROTKB|Q4R381 | 746 | EZH2 "Histone-lysine N-methylt | 0.280 | 0.309 | 0.491 | 4e-68 | |
| UNIPROTKB|I3L7H6 | 737 | EZH2 "Uncharacterized protein" | 0.280 | 0.313 | 0.491 | 5.1e-68 | |
| UNIPROTKB|E1C0W5 | 761 | EZH2 "Uncharacterized protein" | 0.280 | 0.303 | 0.491 | 5.1e-68 |
| TAIR|locus:2132178 SWN "SWINGER" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1587 (563.7 bits), Expect = 1.1e-227, Sum P(2) = 1.1e-227
Identities = 311/514 (60%), Positives = 363/514 (70%)
Query: 322 VDSSEVAIGNENTDTSMQS----LGKRKALELNDSVKVFDEIEESLNKKQKKLLPLDVLT 377
V+ +++ I N ++ + ++ GKR+ L DS +++ NKKQK D
Sbjct: 357 VEKTDIGIKNVDSSSGVEQEHGIRGKREVPILKDS----NDLPNLSNKKQKTAAS-DTKM 411
Query: 378 ASSDGIPRPD-----TKSGHHVGAINDNELQMTSKNTIKKSVSAKVVSHNNIEHNIMDGA 432
+ + +P D TK G DN++ S+ AK V ++++ DG
Sbjct: 412 SFVNSVPSLDQALDSTKGDQ--GGTTDNKVNRDSE------ADAKEVGEPIPDNSVHDGG 463
Query: 433 KDVNK--EPEMKQSFSKGELPEGVLCSSEWKPIEKELYLKGVEIFGRNSCLIARNLLSGL 490
+ + + E+ E S+EW PIEK+LYLKGVEIFGRNSCLIARNLLSGL
Sbjct: 464 SSICQPHHGSGNGAIIIAEMSETSRPSTEWNPIEKDLYLKGVEIFGRNSCLIARNLLSGL 523
Query: 491 KTCMEVSTYMRDSSSSMPHKSVAPSSFLEETVKVDTDYAEQEMXXXXXXXXXXXXXXKLK 550
KTC++VS YMR++ S+ +S P+ L++ + D E+ KLK
Sbjct: 524 KTCLDVSNYMRENEVSVFRRSSTPNLLLDDG-RTDPGNDNDEVPPRTRLFRRKGKTRKLK 582
Query: 551 YSWKSAGHPSIWKRIADGKNQSCKQYTPCGCQSMCGKQCPCLHNGTCCEKYCGCSKSCKN 610
YS KSAGHPS+WKRIA GKNQSCKQYTPCGC SMCGK CPCL N TCCEKYCGCSKSCKN
Sbjct: 583 YSTKSAGHPSVWKRIAGGKNQSCKQYTPCGCLSMCGKDCPCLTNETCCEKYCGCSKSCKN 642
Query: 611 RFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPPKRGDGQCGNMXXX 670
RFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGE P+RG+GQCGNM
Sbjct: 643 RFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEAPRRGEGQCGNMRLL 702
Query: 671 XXXXXXXXXAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLF 730
KSDVAGWGAFLKNSVSKN+YLGEYTGELISH EADKRGKIYDRANSSFLF
Sbjct: 703 LRQQQRILLGKSDVAGWGAFLKNSVSKNEYLGEYTGELISHHEADKRGKIYDRANSSFLF 762
Query: 731 DLNDQYVLDAYRKGDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYR 790
DLNDQYVLDA RKGDKLKFANHS+ PNC+AKVM VAGDHRVGIFA E IEASEELFYDYR
Sbjct: 763 DLNDQYVLDAQRKGDKLKFANHSAKPNCYAKVMFVAGDHRVGIFANERIEASEELFYDYR 822
Query: 791 YGPDQAPAWARKPEGSKREDSSVSQGRAKKHQSH 824
YGPDQAP WARKPEGSK++DS+++ RA+KHQSH
Sbjct: 823 YGPDQAPVWARKPEGSKKDDSAITHRRARKHQSH 856
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| TAIR|locus:2005501 CLF "CURLY LEAF" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2196110 MEA "MEDEA" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-050114-1 ezh1 "enhancer of zeste homolog 1 (Drosophila)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BD02 EZH2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2R6Q2 EZH2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q15910 EZH2 "Histone-lysine N-methyltransferase EZH2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q4R381 EZH2 "Histone-lysine N-methyltransferase EZH2" [Macaca fascicularis (taxid:9541)] | Back alignment and assigned GO terms |
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| UNIPROTKB|I3L7H6 EZH2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1C0W5 EZH2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ZSM8 | EZA1_ARATH | 2, ., 1, ., 1, ., 4, 3 | 0.5654 | 0.9429 | 0.9077 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1.43 | 0.946 |
| 3rd Layer | 2.1.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 824 | |||
| smart00317 | 124 | smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest | 3e-36 | |
| pfam00856 | 113 | pfam00856, SET, SET domain | 1e-24 | |
| COG2940 | 480 | COG2940, COG2940, Proteins containing SET domain [ | 3e-12 | |
| pfam03638 | 42 | pfam03638, CXC, Tesmin/TSO1-like CXC domain | 2e-04 | |
| pfam00757 | 143 | pfam00757, Furin-like, Furin-like cysteine rich re | 0.002 |
| >gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 3e-36
Identities = 47/118 (39%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
Query: 676 RILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDR--ANSSFLFDLN 733
++ + KS GWG + K +++GEY GE+I+ EA++R K YD A + +LFD++
Sbjct: 2 KLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERPKAYDTDGAKAFYLFDID 61
Query: 734 DQYVLDAYRKGDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRY 791
+DA RKG+ +F NHS PNC + V GD R+ IFA I+ EEL DY
Sbjct: 62 SDLCIDARRKGNLARFINHSCEPNCELLFVEVNGDDRIVIFALRDIKPGEELTIDYGS 119
|
Putative methyl transferase, based on outlier plant homologues. Length = 124 |
| >gnl|CDD|216155 pfam00856, SET, SET domain | Back alignment and domain information |
|---|
| >gnl|CDD|225491 COG2940, COG2940, Proteins containing SET domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|202712 pfam03638, CXC, Tesmin/TSO1-like CXC domain | Back alignment and domain information |
|---|
| >gnl|CDD|216103 pfam00757, Furin-like, Furin-like cysteine rich region | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 824 | |||
| KOG1079 | 739 | consensus Transcriptional repressor EZH1 [Transcri | 100.0 | |
| KOG4442 | 729 | consensus Clathrin coat binding protein/Huntingtin | 100.0 | |
| KOG1080 | 1005 | consensus Histone H3 (Lys4) methyltransferase comp | 99.97 | |
| KOG1082 | 364 | consensus Histone H3 (Lys9) methyltransferase SUV3 | 99.95 | |
| smart00317 | 116 | SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) | 99.9 | |
| KOG1083 | 1306 | consensus Putative transcription factor ASH1/LIN-5 | 99.9 | |
| KOG1085 | 392 | consensus Predicted methyltransferase (contains a | 99.75 | |
| KOG1141 | 1262 | consensus Predicted histone methyl transferase [Ch | 99.69 | |
| COG2940 | 480 | Proteins containing SET domain [General function p | 99.57 | |
| PF00856 | 162 | SET: SET domain; InterPro: IPR001214 The SET domai | 99.47 | |
| KOG1081 | 463 | consensus Transcription factor NSD1 and related SE | 98.91 | |
| KOG2589 | 453 | consensus Histone tail methylase [Chromatin struct | 98.53 | |
| KOG2461 | 396 | consensus Transcription factor BLIMP-1/PRDI-BF1, c | 98.13 | |
| KOG1141 | 1262 | consensus Predicted histone methyl transferase [Ch | 97.61 | |
| PF00249 | 48 | Myb_DNA-binding: Myb-like DNA-binding domain; Inte | 93.34 | |
| smart00717 | 49 | SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi | 93.25 | |
| PF13921 | 60 | Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: | 93.23 | |
| smart00717 | 49 | SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi | 92.47 | |
| cd00167 | 45 | SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do | 92.37 | |
| KOG1171 | 406 | consensus Metallothionein-like protein [Inorganic | 91.5 | |
| KOG4442 | 729 | consensus Clathrin coat binding protein/Huntingtin | 90.42 | |
| smart00570 | 51 | AWS associated with SET domains. subdomain of PRES | 90.23 | |
| cd00167 | 45 | SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do | 90.03 | |
| PF09111 | 118 | SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain | 88.94 | |
| PF03638 | 42 | TCR: Tesmin/TSO1-like CXC domain, cysteine-rich do | 87.32 | |
| PF00249 | 48 | Myb_DNA-binding: Myb-like DNA-binding domain; Inte | 81.0 |
| >KOG1079 consensus Transcriptional repressor EZH1 [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-121 Score=1020.99 Aligned_cols=681 Identities=35% Similarity=0.535 Sum_probs=530.5
Q ss_pred cCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhccccchhhhccCCCCCc-------CCccccCCC
Q 003377 21 NDGLGNLTYKLNQLKKQVQAERVVSVKDKIEKNRKKIENDISQLLSTTSRKSVIFAMDNGFGNM-------PLCKYSGFP 93 (824)
Q Consensus 21 ~~~~~~L~~~i~~lKkqi~~~R~~~ik~k~e~n~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~-------~l~~~~g~~ 93 (824)
++.++.+...+..+|+ ++..++.+++++-..++.+...||+-+- +++.+ ........+++ |++++||+.
T Consensus 36 ~~~~e~i~~~~~E~k~-~~~~~~~~~~~~~~~~r~k~~~~~~~~~-~~~~~--~~i~~~n~~~~v~~~~~~~~~q~nfmv 111 (739)
T KOG1079|consen 36 ADRLEKIKILNCEWKK-RRLKPVRSAKEVDGDIRVKVDLDTSIFD-FPSQK--SPINELNAVAQVPIMYSWPPLQQNFMV 111 (739)
T ss_pred HHHHHHHHHHHHHHhh-hhcccccccccccccccccccccccccc-Ccccc--cchhhhcccccccccccCChhhhccee
Confidence 3456666666666666 8888888888888888888888888875 55552 22222222222 999999999
Q ss_pred CCCCCCCCccccccccccccccccCCCCCCCceeEEeeccccccccccccccceeeEeCCCCeEEEeCCCccccCCCccc
Q 003377 94 QGLGDRDYVNSHEVVLSTSSKLSHVQKIPPYTTWIFLDKNQRMAEDQSVVGRRRIYYDQHGSEALVCSDSEEDIIEPEEE 173 (824)
Q Consensus 94 ~~~~d~d~~~~~~v~~~~~iklp~v~klPpYTtWifldrNqrMaedqsvvgrrriYyd~~g~EalicSdseee~~e~eee 173 (824)
++..+.+++...++. +..||+|++|.|+|||+|||+||||||++||+|||+|+||| |.|||++| ||+||| ++++||
T Consensus 112 ~~~~~~~~ip~~~~~-v~~~k~~~ieel~~y~~~v~~dr~~~~~~d~v~ve~~~a~~-Q~~~e~dg-~D~~~e-~~~~~e 187 (739)
T KOG1079|consen 112 EDETVLHNIPYMGDE-VLDIKGPFIEELIKYDGKVHGDRNQRFMEDQVFVELVVALY-QYGGEHDG-SDDEEE-EVLEEE 187 (739)
T ss_pred cccceeccccccccc-ccccccchhhhcccccceeeccccccchhhhhHHHHHHHHH-hcCCcccc-CCCccc-cchhhh
Confidence 999999988887754 67899999999999999999999999999999999999999 99999999 999999 889999
Q ss_pred cccCCcccch-hhhhhHhhcCCcHHHHHHHHHHhC--CCchHHHHHHHHhHhhcCCCCcccccccccccccchhhh-hhh
Q 003377 174 KHEFSDGEDR-ILWTVFEEHGLGEEVINAVSQFIG--IATSEVQDRYSTLKEKYDGKNLKEFEDAGHERGIALEKS-LSA 249 (824)
Q Consensus 174 K~eF~e~eD~-ii~m~~qe~Gls~~Vl~~l~q~~~--~~~seI~eRy~~L~~k~~~~~~~~~~~~~~~~~~~l~K~-l~a 249 (824)
|++|.|+||. |+|++.+.+++++.|+.++++++. ++++||++||.+|+++. ....+.........++.+++. +.+
T Consensus 188 kr~~~e~~~~~~~~~~~~~~~~~~~if~~~~~~f~~k~~~~~lke~~~~l~~~~-~p~~~e~~~~~~id~~~ae~~~r~~ 266 (739)
T KOG1079|consen 188 KRDFLEGEDDDIIESINKLSFPADKIFQAISSMFPDKLTASELKERYGELTSKS-LPVAEEPECTPNIDGSSAEPVQREQ 266 (739)
T ss_pred cccccCcccchhhHhhhhhccchHHHHHHHhhhcccccchhhhhHHHhhhhhcc-ccccCCcccccCCCccccChHHHHh
Confidence 9999999999 899999999999999999999998 99999999999999863 232333332334567788888 999
Q ss_pred hhhcccccccccccccc-----CCcccccCCCCCCCCCcCCCCCcc----ceeeeccCCccccccccccCCCccCCCccc
Q 003377 250 ALDSFDNLFCRRCLSRA-----VQDTVEGSAGNISSIITNTEGTLL----HCNAEVPGAHSDIMAGERCNSKRVLPVTSE 320 (824)
Q Consensus 250 aLDSFDNLFCRRCLvFD-----sQ~li~p~e~~kq~~~~~~~~~~~----~Cy~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (824)
||||||||||||||+|| ||.++||.+ +.-.|.++-.... .||..+.+.....+ +.
T Consensus 267 ~l~sF~tlfCrrCl~ydC~lHg~~~~~~pn~--~~r~e~~~a~~~~pc~p~~~~~l~~~~~~~m--------------~~ 330 (739)
T KOG1079|consen 267 ALHSFHTLFCRRCLKYDCFLHGSQFHAFPNT--KKRKEDEPALENEPCGPGCYGLLEGAKEKTM--------------SA 330 (739)
T ss_pred hhcccccceeeeeeeeeccccCccccccccc--cccCCCCccccccCCCCchhhhhhccchhhh--------------hc
Confidence 99999999999999999 899999999 8888998775333 99988644321000 00
Q ss_pred cccCcccccCCCCCCccccccccchhhcccCccchhhHHHHHHHHHhhhccccccccccCCCCCCCCCCCCCcccccccc
Q 003377 321 AVDSSEVAIGNENTDTSMQSLGKRKALELNDSVKVFDEIEESLNKKQKKLLPLDVLTASSDGIPRPDTKSGHHVGAINDN 400 (824)
Q Consensus 321 ~~~ss~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 400 (824)
++ +.. .++++ .++||..-..++++... +. ..++....+
T Consensus 331 ~~-~~~------------~p~~g--------------------~~~qk~~~~~~~~s~~~--~~-------~~e~~g~~~ 368 (739)
T KOG1079|consen 331 VV-SKC------------PPIRG--------------------DIRQKLVKASSMDSDDE--HV-------EEEDKGHDD 368 (739)
T ss_pred cc-ccC------------CCCcc--------------------hhhhhhcccccCCcchh--hc-------cccccCccc
Confidence 00 000 00110 02233222222211111 00 001111111
Q ss_pred ccccccccccccccccccccccccccccccCCccCCCCcccccCCCCCCCccccccCCCCcHHHHHHHHHhhhhcCCchH
Q 003377 401 ELQMTSKNTIKKSVSAKVVSHNNIEHNIMDGAKDVNKEPEMKQSFSKGELPEGVLCSSEWKPIEKELYLKGVEIFGRNSC 480 (824)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~E~~l~~k~v~~fg~N~C 480 (824)
+....++..-..+. + ...++.........+.++...... ...+|+++|+.||++++.+||.|+|
T Consensus 369 d~~v~~~~~~~~~~----v---~~~~~~~~s~~~~~c~~~~~~~~~---------~~~ew~~~ek~~fr~~~~~~~~n~c 432 (739)
T KOG1079|consen 369 DDGVPRGFGGSVNF----V---GEDDTSTHSSTNSICQNPVHGKKD---------TNVEWNGAEKVLFRVGSTLYGTNRC 432 (739)
T ss_pred cccccccccccccc----c---cCCcccccccccccccCcccccCC---------cccccchhhhHHHHhccccccchhh
Confidence 11111110000000 0 001111111222222222111111 3568999999999999999999999
Q ss_pred HHHHhhhCCCCcHHHHHHHHHhcCCCCCCCCCCCCccccccccccchhhhhcCCCchHHHhhhhcccccccccCCCCCCc
Q 003377 481 LIARNLLSGLKTCMEVSTYMRDSSSSMPHKSVAPSSFLEETVKVDTDYAEQEMPARPRLLRRRGRARKLKYSWKSAGHPS 560 (824)
Q Consensus 481 ~iA~~ll~g~KTC~EV~~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r~~r~~~r~rklk~~~ks~~~p~ 560 (824)
+|||+| ++|||++||+||..+..... +.... .......+.|++.+|+.|+.|+..+.|+++.|+.
T Consensus 433 ~Iar~l--~~ktC~~v~~~~~~e~~~~~--------~~~~~-----~~~~~~~~~r~~~~r~~g~~r~k~q~kk~~~~~~ 497 (739)
T KOG1079|consen 433 SIARNL--LTKTCRQVYEYEQKEVLQGL--------YFDGR-----FRVELPGPKRARKLRLWGRHRRKIQNKKDSRHTV 497 (739)
T ss_pred HHHHHh--cchHHHHHHHHhhcchhhce--------ecccc-----cccccCcchhhHHHHhhhhHHHhhhcccccCCce
Confidence 999999 45999999999997653211 11100 0001233456888999999999999999999977
Q ss_pred cchhcccCCccCCccccCCCCCCCC--CCCCcccCCCcccCCCCCCCcccccccCCcccCCCCccCCCcccccccCccCc
Q 003377 561 IWKRIADGKNQSCKQYTPCGCQSMC--GKQCPCLHNGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDP 638 (824)
Q Consensus 561 ~~kri~~~k~~~~~~y~PC~c~~~C--~~~C~C~~~g~~Ce~~CgC~~~C~nRf~GC~C~~~~C~t~~CpC~~a~rECdP 638 (824)
+|. |+||+|+++| +.+|+|+.++++||++|+|+.+|.|||+||+| ++||++++|||++|.|||||
T Consensus 498 v~~------------~qpC~hp~~c~c~~~C~C~~n~~~CEk~C~C~~dC~nrF~GC~C-k~QC~tkqCpC~~A~rECdP 564 (739)
T KOG1079|consen 498 VWN------------YQPCDHPGPCNCGVGCPCIDNETFCEKFCYCSPDCRNRFPGCRC-KAQCNTKQCPCYLAVRECDP 564 (739)
T ss_pred eee------------cCcccCCCCCCCCCCCcccccCcchhhcccCCHHHHhcCCCCCc-ccccccCcCchhhhccccCc
Confidence 764 7777777555 68999999999999999999999999999999 99999999999999999999
Q ss_pred ccCCCCcccCCCCCCCCCCCCCCC-CCCchhhhhcccccEEEEecCCCCcceeeccccCCCCeeeeecccccCHHHHHHH
Q 003377 639 DVCRNCWVSCGDGSLGEPPKRGDG-QCGNMRLLLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKR 717 (824)
Q Consensus 639 d~C~~C~~sCg~g~l~~p~~~~~~-~C~N~~lqrg~~~~l~V~kS~~kG~GLfA~edI~kGefI~EY~GEIIs~~Ea~~R 717 (824)
++|..||+ | +..++.. .|+|+.+|++++++|.|++|.+.|||||+++.+.|++||.||+||+|+++||++|
T Consensus 565 d~Cl~cg~-~-------~~~d~~~~~C~N~~l~~~~qkr~llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrR 636 (739)
T KOG1079|consen 565 DVCLMCGN-V-------DHFDSSKISCKNTNLQRGEQKRVLLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRR 636 (739)
T ss_pred hHHhccCc-c-------cccccCccccccchhhhhhhcceeechhhccccceeeccccCCCceeeeecceeccchhhhhc
Confidence 99999986 1 2233444 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCcccccCCCcEEEeccccCCccccccCCCCCCcceeEEEEcCeeEEEEEEccCCCCCCeEEEecCCCCCCCC
Q 003377 718 GKIYDRANSSFLFDLNDQYVLDAYRKGDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRYGPDQAP 797 (824)
Q Consensus 718 ~k~yd~~~~sYlf~L~~~~~IDA~~~GN~aRFINHSC~PNc~~~~v~V~G~~rI~~fA~RDI~aGEELTfDYgy~~d~~p 797 (824)
+++||..+.+|+|+|+.+++|||+++||.+||+|||-+|||++++++|+|++||||||+|+|.+||||||||+|+++.++
T Consensus 637 GkiYDr~~cSflFnln~dyviDs~rkGnk~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrYs~~~~~ 716 (739)
T KOG1079|consen 637 GKIYDRYMCSFLFNLNNDYVIDSTRKGNKIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRYSPEHAL 716 (739)
T ss_pred ccccccccceeeeeccccceEeeeeecchhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeeccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCcccccccc
Q 003377 798 AWARKPEGSKREDSSVSQGRAKK 820 (824)
Q Consensus 798 cwCg~pe~~k~d~~~~s~gra~k 820 (824)
-|-+.+..+++++....+.+++|
T Consensus 717 k~~~~~~~s~k~e~~~~q~~~~~ 739 (739)
T KOG1079|consen 717 KFVGIERESYKVELKIFQATQQK 739 (739)
T ss_pred cccccCccccccchhhhhhhcCC
Confidence 99999999999998888888775
|
|
| >KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain | Back alignment and domain information |
|---|
| >KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] | Back alignment and domain information |
|---|
| >KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >COG2940 Proteins containing SET domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco | Back alignment and domain information |
|---|
| >KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] | Back alignment and domain information |
|---|
| >KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription] | Back alignment and domain information |
|---|
| >KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins | Back alignment and domain information |
|---|
| >smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains | Back alignment and domain information |
|---|
| >PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A | Back alignment and domain information |
|---|
| >smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains | Back alignment and domain information |
|---|
| >cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains | Back alignment and domain information |
|---|
| >KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >smart00570 AWS associated with SET domains | Back alignment and domain information |
|---|
| >cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains | Back alignment and domain information |
|---|
| >PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices | Back alignment and domain information |
|---|
| >PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C | Back alignment and domain information |
|---|
| >PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 824 | ||||
| 2w5y_A | 192 | Binary Complex Of The Mixed Lineage Leukaemia (Mll1 | 7e-16 | ||
| 2r3a_A | 300 | Methyltransferase Domain Of Human Suppressor Of Var | 2e-14 | ||
| 3ope_A | 222 | Structural Basis Of Auto-Inhibitory Mechanism Of Hi | 4e-14 | ||
| 3ooi_A | 232 | Crystal Structure Of Human Histone-Lysine N-Methylt | 2e-13 | ||
| 4fmu_A | 278 | Crystal Structure Of Methyltransferase Domain Of Hu | 5e-13 | ||
| 3k5k_A | 283 | Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazolin | 2e-10 | ||
| 2o8j_A | 281 | Human Euchromatic Histone Methyltransferase 2 Lengt | 2e-10 | ||
| 1mvh_A | 299 | Structure Of The Set Domain Histone Lysine Methyltr | 4e-10 | ||
| 2igq_A | 285 | Human Euchromatic Histone Methyltransferase 1 Lengt | 8e-10 | ||
| 3hna_A | 287 | Crystal Structure Of Catalytic Domain Of Human Euch | 8e-10 | ||
| 3fpd_A | 261 | G9a-Like Protein Lysine Methyltransferase Inhibitio | 1e-09 | ||
| 3bo5_A | 290 | Crystal Structure Of Methyltransferase Domain Of Hu | 4e-09 | ||
| 4i51_A | 286 | Methyltransferase Domain Of Human Euchromatic Histo | 5e-09 | ||
| 4ij8_A | 165 | Crystal Structure Of The Complex Of Setd8 With Sam | 5e-08 | ||
| 1zkk_A | 167 | Crystal Structure Of Hset8 In Ternary Complex With | 1e-07 | ||
| 2bqz_A | 161 | Crystal Structure Of A Ternary Complex Of The Human | 1e-07 | ||
| 3f9z_A | 166 | Structural Insights Into Lysine Multiple Methylatio | 4e-07 | ||
| 3f9w_A | 166 | Structural Insights Into Lysine Multiple Methylatio | 4e-07 | ||
| 1ml9_A | 302 | Structure Of The Neurospora Set Domain Protein Dim- | 9e-06 | ||
| 1xqh_A | 264 | Crystal Structure Of A Ternary Complex Of The Methy | 7e-04 | ||
| 3cbm_A | 256 | Set79-Er-Adomet Complex Length = 256 | 7e-04 | ||
| 1o9s_A | 259 | Crystal Structure Of A Ternary Complex Of The Human | 8e-04 | ||
| 2f69_A | 261 | Ternary Complex Of Set79 BOUND TO ADOHCY AND A TAF1 | 8e-04 | ||
| 4e47_A | 264 | Set79 IN COMPLEX WITH INHIBITOR (R)-(3-(3-Cyanophen | 8e-04 | ||
| 3m54_A | 261 | Set79 Y305F IN COMPLEX WITH TAF10 PEPTIDE AND ADOHC | 8e-04 |
| >pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set Domain With The Cofactor Product S-Adenosylhomocysteine. Length = 192 | Back alignment and structure |
|
| >pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation 3-9 Homolog 2 Length = 300 | Back alignment and structure |
| >pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone Methyltransferase Length = 222 | Back alignment and structure |
| >pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine N-Methyltransferase Nsd1 Set Domain In Complex With S-Adenosyl-L-Methionine Length = 232 | Back alignment and structure |
| >pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set Domain- Containing Protein 2 Compound: Pr-Snf Length = 278 | Back alignment and structure |
| >pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A Potent Inhibitor Of Histone Lysine Methyltransferase, G9a Length = 283 | Back alignment and structure |
| >pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2 Length = 281 | Back alignment and structure |
| >pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase Clr4 Length = 299 | Back alignment and structure |
| >pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1 Length = 285 | Back alignment and structure |
| >pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic Histone Methyltransferase 1 In Complex With Sah And Mono- Methylated H3k9 Peptide Length = 287 | Back alignment and structure |
| >pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix- 01294 Length = 261 | Back alignment and structure |
| >pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Histone-Lysine N-Methyltransferase Setmar Length = 290 | Back alignment and structure |
| >pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone Methyltransferase 1, Mutant Y1211a Length = 286 | Back alignment and structure |
| >pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam Length = 165 | Back alignment and structure |
| >pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4 Peptide (16-24) And Adohcy Length = 167 | Back alignment and structure |
| >pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human Histone Methyltransferase Pr-Set7 (Also Known As Set8) Length = 161 | Back alignment and structure |
| >pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY Length = 166 | Back alignment and structure |
| >pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY Length = 166 | Back alignment and structure |
| >pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A Histone Lysine Methyltransferase Length = 302 | Back alignment and structure |
| >pdb|1XQH|A Chain A, Crystal Structure Of A Ternary Complex Of The Methyltransferase Set9 (Also Known As Set79) WITH A P53 Peptide And Sah Length = 264 | Back alignment and structure |
| >pdb|3CBM|A Chain A, Set79-Er-Adomet Complex Length = 256 | Back alignment and structure |
| >pdb|1O9S|A Chain A, Crystal Structure Of A Ternary Complex Of The Human Histone Methyltransferase Set79 Length = 259 | Back alignment and structure |
| >pdb|2F69|A Chain A, Ternary Complex Of Set79 BOUND TO ADOHCY AND A TAF10 Peptide Length = 261 | Back alignment and structure |
| >pdb|4E47|A Chain A, Set79 IN COMPLEX WITH INHIBITOR (R)-(3-(3-Cyanophenyl)-1-Oxo-1- (Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3, 4-Tetrahydroisoquinoline-6- Sulfonamide And S-Adenosylmethionine Length = 264 | Back alignment and structure |
| >pdb|3M54|A Chain A, Set79 Y305F IN COMPLEX WITH TAF10 PEPTIDE AND ADOHCY Length = 261 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 | Back alignment and structure |
|---|
Score = 163 bits (413), Expect = 4e-45
Identities = 48/223 (21%), Positives = 78/223 (34%), Gaps = 33/223 (14%)
Query: 608 CKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRN--------------CWVSCGDGSL 653
+ F GC C K+ C C C G D + C C V C
Sbjct: 55 TQITFPGCICVKTPCLPGTCSCLRHGENYDDNSCLRDIGSGGKYAEPVFECNVLCRCSD- 113
Query: 654 GEPPKRGDGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHRE 713
C N + Q + K+ GWG + K ++ EY GE++ E
Sbjct: 114 ---------HCRNRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLGFSE 164
Query: 714 ADKRGKIYDRANSSFLFDLNDQ--------YVLDAYRKGDKLKFANHSSNPNCFAKVMLV 765
+R + +++S+++ + + +D G+ +F NHS PN + +
Sbjct: 165 VQRRIHLQTKSDSNYIIAIREHVYNGQVMETFVDPTYIGNIGRFLNHSCEPNLLMIPVRI 224
Query: 766 AGD-HRVGIFAKEHIEASEELFYDYRYGPDQAPAWARKPEGSK 807
++ +FA + I EEL YDY A K
Sbjct: 225 DSMVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDH 267
|
| >3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 | Back alignment and structure |
|---|
| >3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 | Back alignment and structure |
|---|
| >2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 | Back alignment and structure |
|---|
| >3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 | Back alignment and structure |
|---|
| >1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 | Back alignment and structure |
|---|
| >2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
| >2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 | Back alignment and structure |
|---|
| >1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 | Back alignment and structure |
|---|
| >3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 | Back alignment and structure |
|---|
| >1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 | Back alignment and structure |
|---|
| >3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273 | Back alignment and structure |
|---|
| >3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 | Back alignment and structure |
|---|
| >3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
| >2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Length = 149 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Length = 152 | Back alignment and structure |
|---|
| >3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Length = 151 | Back alignment and structure |
|---|
| >3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Length = 170 | Back alignment and structure |
|---|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690 | Back alignment and structure |
|---|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690 | Back alignment and structure |
|---|
| >3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens} Length = 510 | Back alignment and structure |
|---|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
| >3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
| >1en2_A UDA, agglutinin isolectin I/agglutinin isolectin V/ AG isolectin VI; hevein domain, superantigen, saccharide binding binding protein; HET: NAG; 1.40A {Urtica dioica} SCOP: g.3.1.1 g.3.1.1 PDB: 1eis_A* 1enm_A* 1ehd_A 1ehh_A* 1iqb_A Length = 89 | Back alignment and structure |
|---|
| >2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423 | Back alignment and structure |
|---|
| >3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 824 | |||
| 3ooi_A | 232 | Histone-lysine N-methyltransferase, H3 lysine-36 l | 100.0 | |
| 3bo5_A | 290 | Histone-lysine N-methyltransferase setmar; SET dom | 100.0 | |
| 3ope_A | 222 | Probable histone-lysine N-methyltransferase ASH1L; | 100.0 | |
| 3h6l_A | 278 | Histone-lysine N-methyltransferase SETD2; SET doma | 100.0 | |
| 1mvh_A | 299 | Cryptic LOCI regulator 4; lysine methyltransferase | 100.0 | |
| 3hna_A | 287 | Histone-lysine N-methyltransferase, H3 lysine-9 sp | 100.0 | |
| 1ml9_A | 302 | Histone H3 methyltransferase DIM-5; adoMet-depende | 100.0 | |
| 2r3a_A | 300 | Histone-lysine N-methyltransferase SUV39H2; histon | 100.0 | |
| 2w5y_A | 192 | Histone-lysine N-methyltransferase HRX; transcript | 100.0 | |
| 3f9x_A | 166 | Histone-lysine N-methyltransferase SETD8; methyltr | 99.97 | |
| 2f69_A | 261 | Histone-lysine N-methyltransferase, H3 lysine-4 sp | 99.95 | |
| 1h3i_A | 293 | Histone H3 lysine 4 specific methyltransferase; 2. | 99.93 | |
| 1n3j_A | 119 | A612L, histone H3 lysine methyltransferase; beta b | 99.93 | |
| 2qpw_A | 149 | PR domain zinc finger protein 2; methyltransferase | 99.92 | |
| 3s8p_A | 273 | Histone-lysine N-methyltransferase SUV420H1; SET d | 99.87 | |
| 3rq4_A | 247 | Histone-lysine N-methyltransferase SUV420H2; suppr | 99.81 | |
| 3ep0_A | 170 | PR domain zinc finger protein 12; PR domain-contai | 99.78 | |
| 3db5_A | 151 | PR domain zinc finger protein 4; methyltransferase | 99.75 | |
| 3dal_A | 196 | PR domain zinc finger protein 1; methyltransferase | 99.74 | |
| 3ray_A | 237 | PR domain-containing protein 11; structural genomi | 99.57 | |
| 3ihx_A | 152 | PR domain zinc finger protein 10; PRDM10, methyltr | 99.53 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.22 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.22 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.04 | |
| 2llk_A | 73 | Cyclin-D-binding MYB-like transcription factor 1; | 96.78 | |
| 3qxy_A | 449 | N-lysine methyltransferase SETD6; epigenetics, pro | 96.18 | |
| 2cqr_A | 73 | RSGI RUH-043, DNAJ homolog subfamily C member 1; m | 96.1 | |
| 2h21_A | 440 | Ribulose-1,5 bisphosphate carboxylase/oxygenase; S | 96.08 | |
| 2lr8_A | 70 | CAsp8-associated protein 2; structural genomics, n | 94.04 | |
| 2din_A | 66 | Cell division cycle 5-like protein; MYB_DNA-bindin | 94.84 | |
| 3smt_A | 497 | Histone-lysine N-methyltransferase SETD3; histone | 94.72 | |
| 2cu7_A | 72 | KIAA1915 protein; nuclear protein, SANT domain, DN | 94.7 | |
| 2yqk_A | 63 | Arginine-glutamic acid dipeptide repeats protein; | 94.45 | |
| 2elk_A | 58 | SPCC24B10.08C protein; hypothetical protein, struc | 94.36 | |
| 2yum_A | 75 | ZZZ3 protein, zinc finger ZZ-type-containing prote | 94.33 | |
| 2eqr_A | 61 | N-COR1, N-COR, nuclear receptor corepressor 1; SAN | 94.32 | |
| 2crg_A | 70 | Metastasis associated protein MTA3; transcription | 94.3 | |
| 3sjm_A | 64 | Telomeric repeat-binding factor 2; human telomeric | 94.26 | |
| 1guu_A | 52 | C-MYB, MYB proto-oncogene protein; transcription, | 94.15 | |
| 1x41_A | 60 | Transcriptional adaptor 2-like, isoform B; transcr | 93.8 | |
| 2d9a_A | 60 | B-MYB, MYB-related protein B; DNA binding, structu | 93.61 | |
| 1w0t_A | 53 | Telomeric repeat binding factor 1; telomere, DNA-b | 93.01 | |
| 2cqq_A | 72 | RSGI RUH-037, DNAJ homolog subfamily C member 1; m | 92.94 | |
| 3osg_A | 126 | MYB21; transcription-DNA complex, MYB2, R2R3 domai | 92.84 | |
| 2cjj_A | 93 | Radialis; plant development, DNA-binding protein, | 92.83 | |
| 2k9n_A | 107 | MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind | 92.75 | |
| 1gv2_A | 105 | C-MYB, MYB proto-oncogene protein; transcription, | 92.74 | |
| 1ug2_A | 95 | 2610100B20RIK gene product; hypothetical protein, | 92.16 | |
| 1gvd_A | 52 | MYB proto-oncogene protein; transcription, transcr | 91.97 | |
| 2iw5_B | 235 | Protein corest, REST corepressor 1; oxidoreductase | 90.95 | |
| 2yus_A | 79 | SWI/SNF-related matrix-associated actin- dependent | 90.85 | |
| 1h8a_C | 128 | AMV V-MYB, MYB transforming protein; transcription | 90.51 | |
| 1ity_A | 69 | TRF1; helix-turn-helix, telomeres, DNA binding, MY | 90.38 | |
| 4a69_C | 94 | Nuclear receptor corepressor 2; transcription, hyd | 89.77 | |
| 2dim_A | 70 | Cell division cycle 5-like protein; MYB_DNA-bindin | 89.15 | |
| 3h6l_A | 278 | Histone-lysine N-methyltransferase SETD2; SET doma | 88.74 | |
| 2k9n_A | 107 | MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind | 88.29 | |
| 3zqc_A | 131 | MYB3; transcription-DNA complex, DNA-binding prote | 88.09 | |
| 1gv2_A | 105 | C-MYB, MYB proto-oncogene protein; transcription, | 87.46 | |
| 2ltp_A | 89 | Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s | 86.88 | |
| 2yus_A | 79 | SWI/SNF-related matrix-associated actin- dependent | 86.88 | |
| 2cu7_A | 72 | KIAA1915 protein; nuclear protein, SANT domain, DN | 86.59 | |
| 1x41_A | 60 | Transcriptional adaptor 2-like, isoform B; transcr | 86.37 | |
| 1h89_C | 159 | C-MYB, MYB proto-oncogene protein; transcription/D | 85.94 | |
| 1h8a_C | 128 | AMV V-MYB, MYB transforming protein; transcription | 85.08 | |
| 3osg_A | 126 | MYB21; transcription-DNA complex, MYB2, R2R3 domai | 84.93 | |
| 2elk_A | 58 | SPCC24B10.08C protein; hypothetical protein, struc | 84.81 | |
| 2yum_A | 75 | ZZZ3 protein, zinc finger ZZ-type-containing prote | 84.48 | |
| 1guu_A | 52 | C-MYB, MYB proto-oncogene protein; transcription, | 82.03 | |
| 2xag_B | 482 | REST corepressor 1; amine oxidase, chromatin regul | 80.48 |
| >3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-42 Score=355.13 Aligned_cols=174 Identities=32% Similarity=0.566 Sum_probs=156.4
Q ss_pred cCCCCCCCcccccccCCcccCCCCccCCCcccccccCccCcccCCCCcccCCCCCCCCCCCCCCCCCCchhhhhcccccE
Q 003377 598 CEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPPKRGDGQCGNMRLLLRQQQRI 677 (824)
Q Consensus 598 Ce~~CgC~~~C~nRf~GC~C~~~~C~t~~CpC~~a~rECdPd~C~~C~~sCg~g~l~~p~~~~~~~C~N~~lqrg~~~~l 677 (824)
++..|+|+.+|.||+. ..||+|..|. |+ ..|+|+.+|++...+|
T Consensus 51 ~~~~C~~~~~C~nr~~-------------------~~EC~~~~C~-c~----------------~~C~Nr~~q~~~~~~l 94 (232)
T 3ooi_A 51 DENPCGIDSECINRML-------------------LYECHPTVCP-AG----------------GRCQNQCFSKRQYPEV 94 (232)
T ss_dssp SSSTTCTTSCCHHHHT-------------------TBCCCTTTCT-TG----------------GGCCCCHHHHTCCCCE
T ss_pred CCCCCCCCCCCcCcCc-------------------eeEeCCCCCC-CC----------------CCcCCccccCCCCccE
Confidence 3667999999999975 5788887665 32 3799999999999999
Q ss_pred EEEecCCCCcceeeccccCCCCeeeeecccccCHHHHHHHhhhhccc--CCcccccCCCcEEEeccccCCccccccCCCC
Q 003377 678 LLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRA--NSSFLFDLNDQYVLDAYRKGDKLKFANHSSN 755 (824)
Q Consensus 678 ~V~kS~~kG~GLfA~edI~kGefI~EY~GEIIs~~Ea~~R~k~yd~~--~~sYlf~L~~~~~IDA~~~GN~aRFINHSC~ 755 (824)
+|++++.+||||||+++|++|+||+||+||||+..++++|...+... ...|+|.++.+++|||+.+||++|||||||+
T Consensus 95 ev~~t~~kG~Gl~A~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~y~~~l~~~~~IDa~~~Gn~aRfiNHSC~ 174 (232)
T 3ooi_A 95 EIFRTLQRGWGLRTKTDIKKGEFVNEYVGELIDEEECRARIRYAQEHDITNFYMLTLDKDRIIDAGPKGNYARFMNHCCQ 174 (232)
T ss_dssp EEEECSSSSEEEEESSCBCTTCEEEECCEEEECHHHHHHHHHHHHHTTCCCCCEEEEETTEEEEEEEEECGGGGCEECSS
T ss_pred EEEEcCCceeEEEECceecCCceeeEeeeeccCHHHHHHHHHHHhhcCCCceeeeecCcceEEeccccccccccccccCC
Confidence 99999999999999999999999999999999999999997766543 3578899999999999999999999999999
Q ss_pred CCcceeEEEEcCeeEEEEEEccCCCCCCeEEEecCCCC---CCCCcccCCCCCCC
Q 003377 756 PNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRYGP---DQAPAWARKPEGSK 807 (824)
Q Consensus 756 PNc~~~~v~V~G~~rI~~fA~RDI~aGEELTfDYgy~~---d~~pcwCg~pe~~k 807 (824)
|||.++.|.+++.++|+|||+|||++||||||||++.. ...+|+||.++|+.
T Consensus 175 PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~~~~~~~~C~CGs~~CrG 229 (232)
T 3ooi_A 175 PNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLECLGNGKTVCKCGAPNCSG 229 (232)
T ss_dssp CSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCTTCSTTCTTCBCCCCCTTCCS
T ss_pred CCeEEEEEEECCceEEEEEECCccCCCCEEEEECCCCcCCCCCcEeECCCCcCcC
Confidence 99999999999999999999999999999999998654 45799999999874
|
| >3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} | Back alignment and structure |
|---|
| >3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
| >1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A | Back alignment and structure |
|---|
| >3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* | Back alignment and structure |
|---|
| >1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* | Back alignment and structure |
|---|
| >2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* | Back alignment and structure |
|---|
| >3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* | Back alignment and structure |
|---|
| >2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* | Back alignment and structure |
|---|
| >1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A | Back alignment and structure |
|---|
| >1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* | Back alignment and structure |
|---|
| >2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* | Back alignment and structure |
|---|
| >3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
| >3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
| >3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
| >2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* | Back alignment and structure |
|---|
| >2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* | Back alignment and structure |
|---|
| >2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
| >2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A | Back alignment and structure |
|---|
| >1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A | Back alignment and structure |
|---|
| >1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A | Back alignment and structure |
|---|
| >2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A | Back alignment and structure |
|---|
| >2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A | Back alignment and structure |
|---|
| >1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A | Back alignment and structure |
|---|
| >1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A | Back alignment and structure |
|---|
| >2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* | Back alignment and structure |
|---|
| >2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 | Back alignment and structure |
|---|
| >1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A | Back alignment and structure |
|---|
| >4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A | Back alignment and structure |
|---|
| >2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A | Back alignment and structure |
|---|
| >3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
| >1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A | Back alignment and structure |
|---|
| >2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C | Back alignment and structure |
|---|
| >1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 | Back alignment and structure |
|---|
| >3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A | Back alignment and structure |
|---|
| >2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A | Back alignment and structure |
|---|
| >2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 824 | ||||
| d1mvha_ | 269 | b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S | 3e-37 | |
| d1ml9a_ | 284 | b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T | 1e-33 | |
| d2f69a2 | 171 | b.85.7.1 (A:194-364) Histone H3 K4-specific methyl | 3e-27 | |
| d2g46a1 | 119 | b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth | 2e-13 | |
| d2h9ec1 | 78 | g.22.1.1 (C:6-83) Anticoagulant protein {Dog hookw | 0.003 | |
| d1n8yc3 | 157 | g.3.9.1 (C:166-322) Protooncoprotein Her2 extracel | 0.004 |
| >d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-clip superfamily: SET domain family: Histone lysine methyltransferases domain: SET domain of Clr4 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 138 bits (349), Expect = 3e-37
Identities = 56/219 (25%), Positives = 82/219 (37%), Gaps = 24/219 (10%)
Query: 590 PCLHNGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGR--ECDPDVCRNCWVS 647
P +G C GC + +R C C A GR V C
Sbjct: 62 PNFQSGCNCSSLGGCDLNNPSR---CECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSF 118
Query: 648 CGDGSLGEPPKRGDGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGE 707
C +C N + + + + K+ GWG ++ Y GE
Sbjct: 119 CSCSM----------ECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGE 168
Query: 708 LISHREADKRGKIYDRANSSFLFDL-----NDQYVLDAYRKGDKLKFANHSSNPNCFAKV 762
+I+ EA KR K YD ++LFDL +Y +DA GD +F NHS +PN
Sbjct: 169 VITSAEAAKRDKNYDDDGITYLFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYS 228
Query: 763 MLVAGD----HRVGIFAKEHIEASEELFYDYRYGPDQAP 797
+ + + FA + I+ EEL +DY D +P
Sbjct: 229 AVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSP 267
|
| >d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 | Back information, alignment and structure |
|---|
| >d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
| >d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 824 | |||
| d1mvha_ | 269 | SET domain of Clr4 {Fission yeast (Schizosaccharom | 100.0 | |
| d1ml9a_ | 284 | Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} | 100.0 | |
| d2f69a2 | 171 | Histone H3 K4-specific methyltransferase SET7/9 ca | 99.92 | |
| d2g46a1 | 119 | Viral histone H3 Lysine 27 Methyltransferase {Para | 99.87 | |
| d2h2ja2 | 261 | RuBisCo LSMT catalytic domain {Garden pea (Pisum s | 98.01 | |
| d1ug2a_ | 95 | 2610100b20rik gene product {Mouse (Mus musculus) [ | 96.53 | |
| d2cqra1 | 60 | DnaJ homolog subfamily C member 1 {Human (Homo sap | 95.98 | |
| d1guua_ | 50 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 95.92 | |
| d2crga1 | 57 | Metastasis associated protein MTA3 {Mouse (Mus mus | 95.76 | |
| d1gv2a2 | 47 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 95.47 | |
| d1w0ua_ | 55 | Telomeric repeat binding factor 2, TRF2 {Human (Ho | 95.45 | |
| d2iw5b1 | 65 | REST corepressor 1, CoREST {Human (Homo sapiens) [ | 94.4 | |
| d2cjja1 | 63 | Radialis {Garden snapdragon (Antirrhinum majus) [T | 94.18 | |
| d2cu7a1 | 65 | MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 | 93.33 | |
| d1gvda_ | 52 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 92.7 | |
| d1w0ta_ | 52 | DNA-binding domain of human telomeric protein, hTR | 92.35 | |
| d1xc5a1 | 68 | Nuclear receptor corepressor 2 {Human (Homo sapien | 92.21 | |
| d2cu7a1 | 65 | MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 | 91.27 | |
| d1x41a1 | 47 | Transcriptional adaptor 2-like, TADA2L, isoform b | 91.05 | |
| d1x41a1 | 47 | Transcriptional adaptor 2-like, TADA2L, isoform b | 89.47 | |
| d1igna1 | 86 | DNA-binding domain of rap1 {Baker's yeast (Sacchar | 88.47 | |
| d2cqqa1 | 59 | DnaJ homolog subfamily C member 1 {Human (Homo sap | 87.79 | |
| d2iw5b1 | 65 | REST corepressor 1, CoREST {Human (Homo sapiens) [ | 85.93 | |
| d1ofcx2 | 128 | SLIDE domain of the nucleosome remodeling ATPase I | 82.24 | |
| d1gvda_ | 52 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 81.86 |
| >d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-clip superfamily: SET domain family: Histone lysine methyltransferases domain: SET domain of Clr4 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=100.00 E-value=2.1e-39 Score=339.80 Aligned_cols=137 Identities=31% Similarity=0.480 Sum_probs=128.5
Q ss_pred CCCCchhhhhcccccEEEEecCCCCcceeeccccCCCCeeeeecccccCHHHHHHHhhhhcccCCcccccCC-----CcE
Q 003377 662 GQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLN-----DQY 736 (824)
Q Consensus 662 ~~C~N~~lqrg~~~~l~V~kS~~kG~GLfA~edI~kGefI~EY~GEIIs~~Ea~~R~k~yd~~~~sYlf~L~-----~~~ 736 (824)
..|.|+.+|++.+.+|+|++|+.+||||||+++|++|+||+||+||||+..++++|...|+....+|+|.+. ..+
T Consensus 123 ~~C~Nr~~q~g~~~~leV~~t~~~G~GvfA~~~I~kGt~I~eY~Gevi~~~e~~~R~~~y~~~~~~~~~~l~~~~~~~~~ 202 (269)
T d1mvha_ 123 MECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFDDASEY 202 (269)
T ss_dssp TTCTTCTGGGCCCSCEEEEECSSSSEEEEESSCBCTTCEEEECCCEEEEHHHHHHHHTTCCSCSCCCEEEECSSCSSSCE
T ss_pred CCCCCeecCCCCccCEEEEEcCCCCeEEEeCcccCCCceEEEecceEEcHHHHHHHHHhHhhcCCcchhheecccccccc
Confidence 379999999999999999999999999999999999999999999999999999999999988888988764 469
Q ss_pred EEeccccCCccccccCCCCCCcceeEEEEcCe----eEEEEEEccCCCCCCeEEEecCCCCCCCCc
Q 003377 737 VLDAYRKGDKLKFANHSSNPNCFAKVMLVAGD----HRVGIFAKEHIEASEELFYDYRYGPDQAPA 798 (824)
Q Consensus 737 ~IDA~~~GN~aRFINHSC~PNc~~~~v~V~G~----~rI~~fA~RDI~aGEELTfDYgy~~d~~pc 798 (824)
+|||+..||++|||||||+|||.++.|++++. ++|+|||+|||++||||||||||..+.+|.
T Consensus 203 ~iDa~~~GN~aRFiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~DYG~~~d~~P~ 268 (269)
T d1mvha_ 203 TVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSPV 268 (269)
T ss_dssp EEECSSEECGGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTTSSSSCC
T ss_pred eeeeeecCcceEEeecCCCCCcEEEEEEecCCcCccceEEEEECCccCCCCEEEEecCCCcCCCCC
Confidence 99999999999999999999999999998753 689999999999999999999999888774
|
| >d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} | Back information, alignment and structure |
|---|
| >d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
| >d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} | Back information, alignment and structure |
|---|
| >d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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