Citrus Sinensis ID: 003389
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 824 | 2.2.26 [Sep-21-2011] | |||||||
| Q7PC87 | 1453 | ABC transporter G family | yes | no | 0.989 | 0.560 | 0.684 | 0.0 | |
| Q7PC84 | 1454 | ABC transporter G family | no | no | 0.998 | 0.566 | 0.671 | 0.0 | |
| Q2PCF1 | 1461 | Pleiotropic drug resistan | N/A | no | 0.961 | 0.542 | 0.671 | 0.0 | |
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.949 | 0.545 | 0.593 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | yes | no | 0.957 | 0.546 | 0.579 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.953 | 0.545 | 0.597 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.956 | 0.543 | 0.573 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.944 | 0.541 | 0.578 | 0.0 | |
| Q8GU86 | 1454 | Pleiotropic drug resistan | no | no | 0.963 | 0.546 | 0.562 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.945 | 0.532 | 0.584 | 0.0 |
| >sp|Q7PC87|AB34G_ARATH ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1204 bits (3114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/822 (68%), Positives = 687/822 (83%), Gaps = 7/822 (0%)
Query: 7 DDLARSFSVRGGQSISSGSRRSWASA---SIREVWNAP-DNVFSRSER-QDDEEELRWAA 61
+DL R+ S RG S+ S S RS A A S R+V+ P D+VF RS+R ++D+ ELRWAA
Sbjct: 6 EDLVRTMSGRG--SLGSTSHRSLAGAASKSFRDVFAPPTDDVFGRSDRREEDDVELRWAA 63
Query: 62 IERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKR 121
+ERLPTYDRL+KGML Q + +GK+ +VDV+NLA ++KK L+E ILK VEEDNEKFL+R
Sbjct: 64 LERLPTYDRLRKGMLPQTMVNGKIGLEDVDVTNLAPKEKKHLMEMILKFVEEDNEKFLRR 123
Query: 122 IRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKK 181
+R RTDRVGIE+PKIEVRY++LSVEGDV +RALPTL NV LN +ES LGL HL+PSKK
Sbjct: 124 LRERTDRVGIEVPKIEVRYENLSVEGDVRSASRALPTLFNVTLNTIESILGLFHLLPSKK 183
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
R + ILKD+SGI+KPSRMTLLLGPP +GKTTL+ ALAGKL L+ SG+ITYCGHE EF
Sbjct: 184 RKIEILKDISGIIKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREF 243
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
VPQ+TCAYISQHDLH GEMTVRE+LDFSGRCLGVGTRY+LL ELSRRE++AGIKPDPEID
Sbjct: 244 VPQKTCAYISQHDLHFGEMTVRESLDFSGRCLGVGTRYQLLTELSRREREAGIKPDPEID 303
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
AFMK++A++GQETSLVTDYVLK+LGLDICADT+VGD MRRGISGGQ+KR+TTGEMLVG A
Sbjct: 304 AFMKSIAISGQETSLVTDYVLKLLGLDICADTLVGDVMRRGISGGQRKRLTTGEMLVGPA 363
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
L+MDEISTGLDSSTTFQICKF++Q+VHI DVTM+++LLQPAPET++LFDDIILLSEGQ
Sbjct: 364 TALFMDEISTGLDSSTTFQICKFMRQLVHIADVTMVISLLQPAPETFELFDDIILLSEGQ 423
Query: 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFV 481
IVYQG RDNVLEFFE+MGFKCPERKG+ADFLQEVTSKKDQEQYW R+ PY Y+ V DF
Sbjct: 424 IVYQGSRDNVLEFFEYMGFKCPERKGIADFLQEVTSKKDQEQYWNRREHPYSYVSVHDFS 483
Query: 482 EGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFV 541
GF SFH GQQ+AS+ RVPYDK++ HPA+LV +KYGIS +LF+ACF REWLLMKRNSFV
Sbjct: 484 SGFNSFHAGQQLASEFRVPYDKAKTHPAALVTQKYGISNKDLFKACFDREWLLMKRNSFV 543
Query: 542 YIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLR 601
Y+FKT Q+T MSLI MTVYFRTEM VG + G +++GALFFSL+N+MFNG AE A TV+R
Sbjct: 544 YVFKTVQITIMSLIAMTVYFRTEMHVGTVQDGQKFYGALFFSLINLMFNGMAELAFTVMR 603
Query: 602 LPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLA 661
LP+F+KQRD LFYP WAFALP +LL+IP+S+++S IW+ALTYYTIG+ P+A+RFF+Q LA
Sbjct: 604 LPVFFKQRDFLFYPPWAFALPGFLLKIPLSLIESVIWIALTYYTIGFAPSAARFFRQLLA 663
Query: 662 FFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYIS 721
+F ++ M+L L+R + A+GRTEVI+N+ GT LL++ LGGF+++KDDI +L W YY S
Sbjct: 664 YFCVNQMALSLFRFLGALGRTEVIANSGGTLALLVVFVLGGFIISKDDIPSWLTWCYYTS 723
Query: 722 PMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGY 781
PMMYGQT+L++NEFL RW + N D IN T+G+VLLK RGF TE W+WI +GAL G+
Sbjct: 724 PMMYGQTALVINEFLDERWGSPNNDTRINAKTVGEVLLKSRGFFTEPYWFWICIGALLGF 783
Query: 782 SFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEG 823
+ LFNF +I AL YLNP+G+S +T + E+G+ + H G
Sbjct: 784 TVLFNFCYIIALMYLNPLGNSKATTVVEEGKDKHKGSHSGTG 825
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC84|AB39G_ARATH ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1193 bits (3086), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 555/827 (67%), Positives = 682/827 (82%), Gaps = 4/827 (0%)
Query: 1 MSATVADDLARSFSVRGGQSISSGSRRSW--ASASIREVW-NAPDNVFSRSER-QDDEEE 56
M+A + D ++ G S++S S RS AS S R+V+ D VF RSER ++D+ E
Sbjct: 1 MAAMLGRDEDPVGALSGRVSLASTSHRSLVGASKSFRDVFMPQTDEVFGRSERREEDDME 60
Query: 57 LRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNE 116
LRWAAIERLPT+DRL+KGML Q +GK+ ++D++ L +DKK L+E IL VEEDNE
Sbjct: 61 LRWAAIERLPTFDRLRKGMLPQTSANGKIELEDIDLTRLEPKDKKHLMEMILSFVEEDNE 120
Query: 117 KFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176
KFL+ +R RTDRVGIE+PKIEVRY+++SVEGDV +RALPTL NV LN LES LG HL
Sbjct: 121 KFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRSASRALPTLFNVTLNTLESILGFFHL 180
Query: 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236
+PSK++ ++ILKD+SGIVKPSRMTLLLGPP +GKTTL+ ALAGKL L+ SG+ITYCGH
Sbjct: 181 LPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGH 240
Query: 237 ELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
E EFVPQ+TCAYISQHDLH GEMTVRE LDFSGRCLGVG+RY+L++ELSRREK+ GIKP
Sbjct: 241 EFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGSRYQLMSELSRREKEEGIKP 300
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
DP+IDAFMK++A++GQETSLVTDYVLKILGLDICAD + GD MRRGISGGQKKR+TTGEM
Sbjct: 301 DPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGDVMRRGISGGQKKRLTTGEM 360
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
LVG A L+MDEISTGLDSSTTFQICKF++Q+VHI DVTMI++LLQPAPET++LFDDIIL
Sbjct: 361 LVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMIISLLQPAPETFELFDDIIL 420
Query: 417 LSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIP 476
LSEGQIVYQGPRDNVLEFFE+ GF+CPERKGVADFLQEVTSKKDQEQYW ++ QPY Y+
Sbjct: 421 LSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTSKKDQEQYWNKREQPYNYVS 480
Query: 477 VSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMK 536
VSDF GF +FH GQ++ S+ RVPYDK++ H A+LV +KYGIS WELF+ACF REWLLMK
Sbjct: 481 VSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYGISNWELFKACFDREWLLMK 540
Query: 537 RNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENA 596
RNSFVY+FKT Q+T MSLI MTVY RTEM VG + G +++GA+FFSL+N+MFNG AE A
Sbjct: 541 RNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFYGAMFFSLINVMFNGLAELA 600
Query: 597 MTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFF 656
TV+RLP+FYKQRD LFYP WAFALP WLL+IP+S+++S IW+ LTYYTIG+ P+A+RFF
Sbjct: 601 FTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGIWIGLTYYTIGFAPSAARFF 660
Query: 657 KQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRW 716
+Q LA+F ++ M+L L+R + A+GRTEVISN++GTF LLI+ +LGGF++AKDDI P++ W
Sbjct: 661 RQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIVFTLGGFIIAKDDIRPWMTW 720
Query: 717 GYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVG 776
YY+SPMMYGQT++++NEFL RW + N D IN T+G+VLLK RGF TE W+WI +
Sbjct: 721 AYYMSPMMYGQTAIVMNEFLDERWSSPNYDTRINAKTVGEVLLKSRGFFTEPYWFWICIV 780
Query: 777 ALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEG 823
AL G+S LFN +I AL YLNP+G+S +TV+EE +KQ+ EG
Sbjct: 781 ALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGKDKQKGENRGTEG 827
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q2PCF1|PDR2_NICPL Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1160 bits (3000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/804 (67%), Positives = 666/804 (82%), Gaps = 12/804 (1%)
Query: 21 ISSGSR-RSW-ASASIREVWNAPDNVFS-------RSERQDDEEELRWAAIERLPTYDRL 71
+ S SR SW +S SIREV+ +VF R +++E+EL+WAAI+RLPTY+RL
Sbjct: 13 LRSNSRMSSWRSSQSIREVFGGSSDVFMKNYSTRWREMAEEEEKELKWAAIDRLPTYNRL 72
Query: 72 KKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGI 131
+KGM+ +V+ +G+VV HEVD++ L QDKK L+ESILK+VE+DNE+FL+R+R+RTDRVGI
Sbjct: 73 RKGMMKEVMSNGRVVHHEVDMTKLGNQDKKVLMESILKVVEDDNEQFLRRLRNRTDRVGI 132
Query: 132 EIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVS 191
EIPKIEVR+ +LSV GD +VGTRALPTLLN LN +E+ LGL+HL PSKKR V+IL+DVS
Sbjct: 133 EIPKIEVRFQNLSVGGDAYVGTRALPTLLNSTLNTIEAVLGLIHLSPSKKRVVKILEDVS 192
Query: 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYIS 251
GI++PSRMTLLLGPPG+GKTT + ALAGK KDLR +GKITYCGHE +EFVPQRT AYIS
Sbjct: 193 GIIRPSRMTLLLGPPGSGKTTFLKALAGKSEKDLRVNGKITYCGHEFHEFVPQRTSAYIS 252
Query: 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAG 311
QHDLHHGEMTVRETLDF+GRCLGVGTRY+LL ELSRREK+AGI PDP+IDAFMKA A+ G
Sbjct: 253 QHDLHHGEMTVRETLDFAGRCLGVGTRYDLLVELSRREKEAGIMPDPQIDAFMKATAIDG 312
Query: 312 QETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST 371
QETSL+TDYVLKILGLDICAD MVGD+MRRGISGGQKKRVTTGEMLVG A +MDEIS
Sbjct: 313 QETSLITDYVLKILGLDICADIMVGDDMRRGISGGQKKRVTTGEMLVGPAKAFFMDEISK 372
Query: 372 GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNV 431
GLDSSTT+QI KF++QMVHI D+TM+++LLQPAPET+DLFDD+I+LSEGQIVYQGPR+NV
Sbjct: 373 GLDSSTTYQIVKFMRQMVHINDITMVISLLQPAPETFDLFDDVIVLSEGQIVYQGPRENV 432
Query: 432 LEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQ 491
LEFFE+MGF+CPERK +ADFL EVTSKKDQEQYWFRK++PY YI V +F E F SF +G+
Sbjct: 433 LEFFEYMGFRCPERKAIADFLLEVTSKKDQEQYWFRKSRPYVYISVPEFSESFNSFQIGE 492
Query: 492 QIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTF 551
QI +L +PYDK H A+LVK KYGIS WELF++CF REWLLMKR+SF+YIFKT Q+T
Sbjct: 493 QIIEELTIPYDKYSVHRAALVKNKYGISSWELFKSCFTREWLLMKRSSFLYIFKTTQITI 552
Query: 552 MSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDH 611
M+ I +TV+ RT+M G + ++++GALFFSL+N+MFNG E AMTV RLP+F+KQR+
Sbjct: 553 MATIALTVFLRTQMKAGTVKDSAKFWGALFFSLINVMFNGMQELAMTVFRLPVFFKQRNS 612
Query: 612 LFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLP 671
LFYP+WAFALPIW+L+IPIS+++S IW+ LTYYTIG+ PAASRFFKQ LAF +H M+L
Sbjct: 613 LFYPAWAFALPIWVLKIPISLVESAIWIILTYYTIGFAPAASRFFKQLLAFIGVHQMALS 672
Query: 672 LYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLL 731
L+R +AA GRT+V++NTLGTF LL++ LGGF+++KDDI+ ++ WGYY+SPMMYGQ ++
Sbjct: 673 LFRFIAAAGRTQVVANTLGTFTLLMVFILGGFIVSKDDIQDWMIWGYYLSPMMYGQNAIA 732
Query: 732 VNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIA 791
+NEFL RW A +QPT+GK LL RG T +WYWI +GAL G+S LFN LFIA
Sbjct: 733 INEFLDDRWSAPTNG---SQPTVGKTLLHARGLFTTESWYWISIGALFGFSLLFNVLFIA 789
Query: 792 ALAYLNPIGDSNSTVIEEDGEKQR 815
AL +LNPIGD+ + +E + R
Sbjct: 790 ALTFLNPIGDTKAVKVENGDKNNR 813
|
May be a general defense protein. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 996 bits (2575), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/792 (59%), Positives = 614/792 (77%), Gaps = 10/792 (1%)
Query: 24 GSRRSWASASIREVW-NAPDNVFSRSER-QDDEEELRWAAIERLPTYDRLKKGMLNQVLE 81
GS R A+ +W N +FSRS R +DDEE L+WAA+E+LPT+DRL+KG+L
Sbjct: 16 GSTRGSLRANSNSIWRNNGVEIFSRSSRDEDDEEALKWAALEKLPTFDRLRKGLLF---- 71
Query: 82 DGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYD 141
+ EVD+++L Q++K LLE ++K+ +EDNEKFL ++++R DRVGI++P IEVRY+
Sbjct: 72 GSQGAAAEVDINDLGFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYE 131
Query: 142 HLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTL 201
HL+++ D +VG+R+LPT +N N +E+ L LH++ S+KR + ILKD+SGI+KP RMTL
Sbjct: 132 HLNIDADAYVGSRSLPTFMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIKPCRMTL 191
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261
LLGPP +GKTTL+LALAGKL L+ +GK++Y GHEL+EFVPQRT AYISQHDLH GEMT
Sbjct: 192 LLGPPSSGKTTLLLALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMT 251
Query: 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYV 321
VRETL+FS RC GVG+R+E+LAELSRREK A IKPD +ID +MKA A GQE ++VTDYV
Sbjct: 252 VRETLEFSARCQGVGSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYV 311
Query: 322 LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQI 381
LKILGLDICADTMVGD+M RGISGGQKKRVTTGEMLVG + L+MDEISTGLDSSTT+ I
Sbjct: 312 LKILGLDICADTMVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSI 371
Query: 382 CKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFK 441
L+Q V IL T +++LLQPAPETY+LFDDIILLS+G IVYQGPRD+VLEFFE MGFK
Sbjct: 372 VNSLRQSVQILKGTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFK 431
Query: 442 CPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPY 501
CP+RKGVADFLQEVTSKKDQ+QYW ++N+PYR+I +F E ++SFH+G+++ +L P+
Sbjct: 432 CPQRKGVADFLQEVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPF 491
Query: 502 DKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYF 561
DK++ HPA+L EKYGI K EL + C RE LLMKRNSFVY+FK QLT M+LI MT++F
Sbjct: 492 DKTKCHPAALTNEKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFF 551
Query: 562 RTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFAL 621
RTEM + G Y GALFF ++ IMFNG +E AMT+ +LP+FYKQRD LF+PSWA+A+
Sbjct: 552 RTEMPRDTTDDGGIYAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAI 611
Query: 622 PIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGR 681
P W+L+IP+++++ +WV LTYY IG+DP +RF KQFL ++ M+ ++R + AVGR
Sbjct: 612 PSWILKIPVTLVEVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGR 671
Query: 682 TEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWD 741
T +++T G+F LL+ +LGGFV+++DD++ + WGY+ISPMMY S+LVNEF G +W+
Sbjct: 672 TMGVASTFGSFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWN 731
Query: 742 AQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGD 801
+ P N+ T+G ++K RGF E+ WYWIGVGAL G++ +FNF + ALAYLNP D
Sbjct: 732 --HIVPGGNE-TLGSTVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPF-D 787
Query: 802 SNSTVIEEDGEK 813
V+ EDGE
Sbjct: 788 KPQAVLPEDGEN 799
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 984 bits (2544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/804 (57%), Positives = 609/804 (75%), Gaps = 15/804 (1%)
Query: 8 DLARSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRSERQ-DDEEELRWAAIERLP 66
D+ R SV G + SW S R + F RS R+ DDEE L+WAAIE+LP
Sbjct: 2 DIVRMGSVASGGGSVRRTASSWRGTSGRS------DAFGRSVREEDDEEALKWAAIEKLP 55
Query: 67 TYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRT 126
TYDR++KG+L G V EVD+ L +Q+++ L+E +++ EEDNE+FL ++R R
Sbjct: 56 TYDRMRKGILTA----GGV--EEVDIGGLGLQERRNLIERLVRTAEEDNERFLLKLRDRM 109
Query: 127 DRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRI 186
+RVGI+ P IEVR+++LS++ + +VG R +PT N N + L + +V S KR + I
Sbjct: 110 ERVGIDNPTIEVRFENLSIDAEAYVGNRGIPTFTNFFSNKIMDVLSAMRIVSSGKRPISI 169
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
L D+SGI++P RM+LLLGPPG+GKT+L+LALAGKL L+ SG++TY GH+++EFVPQRT
Sbjct: 170 LHDISGIIRPGRMSLLLGPPGSGKTSLLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRT 229
Query: 247 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKA 306
AYI QHDLH GEMTVRETL FS RC GVGTRY++L ELSRREK+A IKPDP+ID +MKA
Sbjct: 230 SAYIGQHDLHIGEMTVRETLAFSARCQGVGTRYDMLTELSRREKEASIKPDPDIDVYMKA 289
Query: 307 VAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYM 366
++V GQE S+VTDY+LKILGL+ICADTMVGD M RGISGGQKKRVTTGEMLVG A L+M
Sbjct: 290 ISVEGQE-SVVTDYILKILGLEICADTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFM 348
Query: 367 DEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
DEISTGLDSSTT+QI L+Q VHIL T ++ALLQPAPETYDLFDDI+LLSEGQIVYQG
Sbjct: 349 DEISTGLDSSTTYQIVNSLRQSVHILGGTALIALLQPAPETYDLFDDIVLLSEGQIVYQG 408
Query: 427 PRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKS 486
PR+N+LEFFE MGFKCPERKGVADFLQEVTS+KDQ QYW R+++PYRYI V+DF E FK
Sbjct: 409 PRENILEFFEAMGFKCPERKGVADFLQEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKE 468
Query: 487 FHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKT 546
FH+G+ + S+LRVP+D+++ HPA+L +YGISK EL +ACF+REWLLMKRNSFVYIFK
Sbjct: 469 FHVGRNLGSELRVPFDRTRNHPAALTTSRYGISKMELTKACFSREWLLMKRNSFVYIFKI 528
Query: 547 FQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFY 606
QL + I MTV+ RT+M + G+ + GA+F L+ +FNGFAE AM++ +LPIFY
Sbjct: 529 LQLIILGSIGMTVFLRTKMHRRSVEDGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFY 588
Query: 607 KQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIH 666
KQRD LFYPSWA+ALP W+L+IPIS L+ +W+ +TYY +G+DP RFF+ ++ I
Sbjct: 589 KQRDLLFYPSWAYALPTWVLKIPISFLECAVWICMTYYVMGFDPNIERFFRHYVLLVLIS 648
Query: 667 NMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYG 726
M+ L+RL+AA+GR V+++T G+F LI++ LGGF++++++I+ + WGY+ SP+MY
Sbjct: 649 QMASGLFRLLAALGREMVVADTFGSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYA 708
Query: 727 QTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFN 786
Q ++ VNEFLG W+ + DP+ + T+G +LK+RG ++NWYWIGVGAL GY LFN
Sbjct: 709 QNAIAVNEFLGHSWN-KVVDPTQSNDTLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFN 767
Query: 787 FLFIAALAYLNPIGDSNSTVIEED 810
LFI L +L+P+G + V EE+
Sbjct: 768 ILFILFLEWLDPLGKGQAVVSEEE 791
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 981 bits (2536), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/800 (59%), Positives = 609/800 (76%), Gaps = 14/800 (1%)
Query: 24 GSRRSWASASIR---EVWNAPD--NVFSRSERQ-DDEEELRWAAIERLPTYDRLKKGMLN 77
GS R S+R W +P +VF RS R+ DDEE L+WAA+E+LPTYDRL+KG++
Sbjct: 9 GSLRGSLQGSLRRSVSAWRSPSTSDVFGRSSREEDDEEALKWAALEKLPTYDRLRKGIMT 68
Query: 78 QVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIE 137
DG ++ EVD+ L Q++K LLE +++ EEDNE+FL ++R+R +RVGI+ P IE
Sbjct: 69 G---DGGEIQ-EVDIQGLGFQERKNLLEKLVRNAEEDNERFLLKLRNRMERVGIDNPTIE 124
Query: 138 VRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPS 197
VR++HL++ + VG R +PTL+N +N L LHL+PS KR + IL DVSGI+KP
Sbjct: 125 VRFEHLNINAEAFVGNRGVPTLVNFFVNKAIWILSALHLMPSGKRPISILHDVSGIIKPC 184
Query: 198 RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH 257
RMTLLLGPPGAGKTTL+LALAGKL L+ +G +TY GH ++EFVPQRT AYISQHD+H
Sbjct: 185 RMTLLLGPPGAGKTTLLLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHI 244
Query: 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLV 317
GEMTVRETL FS RC GVGTRYE+L ELSRREK+A IKPDP++D +MKAVAV GQE S+V
Sbjct: 245 GEMTVRETLAFSSRCQGVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQE-SVV 303
Query: 318 TDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSST 377
TDY+LKILGLDICADTMVGD M RGISGGQKKRVTTGEMLVG + L+MDEISTGLDSST
Sbjct: 304 TDYILKILGLDICADTMVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSST 363
Query: 378 TFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEH 437
TFQI L+Q VHIL T ++ALLQPAPETYDLFDDI+LLS+GQIVYQGPR+NVLEFFE
Sbjct: 364 TFQIVNSLRQSVHILGGTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFES 423
Query: 438 MGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDL 497
MGFKCPERKGVADFLQEVTS+KDQ+QYW R+N+PYR++PV++F E FKSFH+G ++ +L
Sbjct: 424 MGFKCPERKGVADFLQEVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEEL 483
Query: 498 RVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICM 557
P+D+S+ HPA+L KYGISK EL +AC REWLLMKRNSFVYIFK QL ++LI M
Sbjct: 484 STPFDRSRNHPAALTTSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAM 543
Query: 558 TVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSW 617
TV+FRT++ + + +FGA+F L+ +FNGFAE AM++ +LP+FYKQRD LFYP W
Sbjct: 544 TVFFRTKLPRNGLEDATIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPW 603
Query: 618 AFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVA 677
A+ALP W+L+IPIS ++ +W+A+TYY IG+DP R F+ +L I ++ L+RL+A
Sbjct: 604 AYALPTWILKIPISFVECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLA 663
Query: 678 AVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLG 737
AVGR V+++T G F L+++ LGGF++A++ I+ F WGY+ SP+MY Q ++ VNEFLG
Sbjct: 664 AVGRDMVVADTFGAFAQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLG 723
Query: 738 GRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLN 797
W NK T+G+ L+ RG + NWYWIGVGAL GY LFNFLFI L +L+
Sbjct: 724 HSW---NKLVDATGQTLGERFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLD 780
Query: 798 PIGDSNSTVIEEDGEKQRAS 817
P+G +TV EE +++ A+
Sbjct: 781 PLGKGQTTVSEEALQEKEAN 800
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 971 bits (2511), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/804 (57%), Positives = 613/804 (76%), Gaps = 16/804 (1%)
Query: 32 ASIR---EVWNAPDNVFSRS-----ERQDDEEELRWAAIERLPTYDRLKKGMLNQVLEDG 83
AS+R +W + +VFSRS + DDEE LRWAA+ERLPTYDR+++G+L EDG
Sbjct: 9 ASLRREGSMWRSGGDVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDG 68
Query: 84 KV--VKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYD 141
K EVDV L ++ + L+E +++ ++D+E+FL ++R R DRVGI+ P IEVR++
Sbjct: 69 GAGGEKVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVRFE 128
Query: 142 HLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTL 201
+L VE DVHVG R LPTLLN N +E+ LH++P+KK+ + +L DVSGI+KP RMTL
Sbjct: 129 NLEVEADVHVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRMTL 188
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261
LLGPPG+GKTTL+LALAGKL KDL+ SGK+TY GH ++EFVP+RT AYISQHDLH GEMT
Sbjct: 189 LLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIGEMT 248
Query: 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYV 321
VRETL FS RC GVGTRYE+L EL+RREK A IKPD +ID +MKA A+ GQE+S+VTDY+
Sbjct: 249 VRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTDYI 308
Query: 322 LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQI 381
LKILGLDICADT+VG+EM RGISGGQ+KRVTTGEMLVG A L+MDEISTGLDSSTT+QI
Sbjct: 309 LKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQI 368
Query: 382 CKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFK 441
L+Q +HIL T +++LLQPAPETY+LFDDIILLS+GQ+VYQGPR++VLEFFE MGF+
Sbjct: 369 VNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFR 428
Query: 442 CPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPY 501
CP RKGVADFLQEVTS+KDQ QYW R+++PYR++PV F + F+SFH+G+ I ++L P+
Sbjct: 429 CPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPF 488
Query: 502 DKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYF 561
D++++HPA+L KYG+S+ EL +A RE LLMKRN+F+YIFK LT M+LI MT +F
Sbjct: 489 DRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFF 548
Query: 562 RTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFAL 621
RT M D + G Y GAL+F+L +MFNGFAE AMTV++LP+F+KQRD LF+P+WA+ +
Sbjct: 549 RTSMR-HDRDYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTI 607
Query: 622 PIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGR 681
P W+L+IPI+ L+ ++V +TYY IG+DP+ SRFFKQ+L +++ MS L+R +A +GR
Sbjct: 608 PSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGR 667
Query: 682 TEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWD 741
V+S+T G LL +LGGF++A+ D++ + WGY+ISP+ Y Q ++ NEFLG W
Sbjct: 668 DMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWS 727
Query: 742 AQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGD 801
++ T+G +LK RG TE+ WYWIG+GAL GY+ LFN L+ AL+ L+P D
Sbjct: 728 QILPGENV---TLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTD 784
Query: 802 SNSTVIEEDGEKQRA--SGHEAEG 823
S++++ E+ +++ A +G EG
Sbjct: 785 SHASMSEDALKEKHANLTGEVVEG 808
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 966 bits (2498), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/798 (57%), Positives = 602/798 (75%), Gaps = 20/798 (2%)
Query: 18 GQSISSGSRRSWASASIRE----VW-NAPDNVFSRSER-QDDEEELRWAAIERLPTYDRL 71
G+S+ + R S SIRE +W N VFSRS R +DDEE L+WAA+E+LPTYDRL
Sbjct: 11 GRSLRASIRGS-MRGSIRENSNSIWRNNGAEVFSRSARDEDDEEALKWAALEKLPTYDRL 69
Query: 72 KKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGI 131
+KG +L + EVDV + V ++K LLE ++K+ +EDNEKFL ++++R DRVGI
Sbjct: 70 RKG----ILFGSQGAAAEVDVDDSGVLERKNLLERLVKVADEDNEKFLLKLKNRIDRVGI 125
Query: 132 EIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVS 191
+ P IEVR++HL+++ D +VG+RALPT N N +E L +H++PSKKR V ILKDVS
Sbjct: 126 DFPSIEVRFEHLNIDADAYVGSRALPTFTNFISNFVEGLLDSIHILPSKKRQVTILKDVS 185
Query: 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYIS 251
GIVKP RMTLLLGPPG+GKTTL+LALAGKL L+ +GK+TY GHEL+EFVPQRT AYIS
Sbjct: 186 GIVKPCRMTLLLGPPGSGKTTLLLALAGKLDSALKVTGKVTYNGHELHEFVPQRTAAYIS 245
Query: 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAG 311
QHDLH GEMTVRETL+FS RC GVG+RYE+LAELSRREK A IKPD +ID FMKA + G
Sbjct: 246 QHDLHIGEMTVRETLEFSARCQGVGSRYEMLAELSRREKAANIKPDADIDMFMKAASTEG 305
Query: 312 QETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST 371
QE +VTDY+LKILGLDICADTMVGD+M RGISGGQKKRVTTGEM+VG + L+MDEIST
Sbjct: 306 QEAKVVTDYILKILGLDICADTMVGDQMIRGISGGQKKRVTTGEMIVGPSKALFMDEIST 365
Query: 372 GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNV 431
GLDSSTT+ I LKQ V I+ T +++LLQPAPETY+LFDDIILLS+G IVY+GPR+ V
Sbjct: 366 GLDSSTTYSIVNSLKQSVRIMKGTALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEV 425
Query: 432 LEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQ 491
LEFFE MGFKCPERKG ADFLQEVTSKKDQ+QYW R+++PYR+I +F E ++SFH+G+
Sbjct: 426 LEFFESMGFKCPERKGAADFLQEVTSKKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGR 485
Query: 492 QIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTF 551
+++ +L+ +DKS++HPA+L +KYGI K +L + C RE LLM+RNSFVY+FK FQL
Sbjct: 486 KVSDELKTTFDKSKSHPAALTTQKYGIGKRQLLKVCTERELLLMQRNSFVYLFKFFQLLI 545
Query: 552 MSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDH 611
++L+ MT++FRT+M G Y GALFF ++ IMFNG +E MT+ +LP+FYKQRD
Sbjct: 546 IALMTMTIFFRTKMPRDSAEDGGIYSGALFFVVIMIMFNGLSELPMTLYKLPVFYKQRDF 605
Query: 612 LFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLP 671
LFYPSWA+A+P W+L+IP++ + +WV LTYY +G+DP RFFKQFL ++ M+
Sbjct: 606 LFYPSWAYAIPSWILKIPVTFAEVGMWVFLTYYVMGFDPNVGRFFKQFLLLLLVNQMASA 665
Query: 672 LYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLL 731
L+R +AAVGRT +++T G F LL+ +LGGF++A++D++ + WGY+ SP+MY ++L
Sbjct: 666 LFRFIAAVGRTMGVASTFGAFALLLQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAIL 725
Query: 732 VNEFLGGRWD---AQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFL 788
VNEF G +W A +P +G +++ RGF ++ WYWIGVGAL G+ +FN
Sbjct: 726 VNEFDGQKWKHIVAGGTEP------LGAAVVRARGFFPDAYWYWIGVGALAGFIVMFNIA 779
Query: 789 FIAALAYLNPIGDSNSTV 806
+ ALAYLNP +T+
Sbjct: 780 YSVALAYLNPFDKPQATI 797
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q8GU86|PDR5_ORYSJ Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 960 bits (2481), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/814 (56%), Positives = 605/814 (74%), Gaps = 20/814 (2%)
Query: 17 GGQSISSGSRRSWAS---ASIREVWNAPDNVFSRS------ERQDDEEELRWAAIERLPT 67
G+ SGSRRSW S AS+ D+ F RS + DDEE LRWAA+E+LPT
Sbjct: 2 AGEITPSGSRRSWLSSGAASLARSLRDGDDPFRRSAAASRRDAGDDEENLRWAALEKLPT 61
Query: 68 YDRLKKGMLNQVLEDGKVV--------KHEVDVSNLAVQDKKRLLESILKIVEEDNEKFL 119
YDR+++G+L + ++ G EVD++NL ++ + L+E + K VE+DNE+FL
Sbjct: 62 YDRMRRGILRKAVDGGGDGEGAGSLFKADEVDIANLDPREGRELMERVFKAVEDDNERFL 121
Query: 120 KRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPS 179
+R R R D+VGIE+PKIEVRY HL +E DVHVG RALPTLLN +N LE + L + S
Sbjct: 122 RRFRDRLDQVGIELPKIEVRYQHLDIEADVHVGKRALPTLLNATINTLEGLVSLF--ISS 179
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
KR ++IL DV+GI+KPSRMTLLLGPP +GK+TLM AL GK K+L+ SG+ITYCGH
Sbjct: 180 NKRKLKILNDVNGIIKPSRMTLLLGPPSSGKSTLMRALTGKPDKNLKVSGEITYCGHTFK 239
Query: 240 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
EF P+RT AY+SQHDLH+ EMTVRETLDFS RCLG G RY++L+EL+RRE+ AGIKPDPE
Sbjct: 240 EFYPERTSAYVSQHDLHNPEMTVRETLDFSRRCLGSGARYDMLSELTRRERNAGIKPDPE 299
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
IDA MKA V G++ ++VTD VLK LGLDICADT+VG M RGISGGQKKRVTTGEML G
Sbjct: 300 IDALMKATVVEGKQNNIVTDLVLKALGLDICADTIVGGAMIRGISGGQKKRVTTGEMLTG 359
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419
A L+MDEISTGLDSS+TFQI K+++Q+ H+++ T++++LLQP PETY LFDDI+L++E
Sbjct: 360 PATALFMDEISTGLDSSSTFQIVKYIRQVTHVMNATVMMSLLQPPPETYALFDDIVLIAE 419
Query: 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSD 479
G IVY GPR+N+LEFFE GF+CPERKGVADFLQEVTS+KDQ+QYWF + YRY+ V +
Sbjct: 420 GYIVYHGPRENILEFFESAGFRCPERKGVADFLQEVTSRKDQQQYWFLEQDHYRYVSVEE 479
Query: 480 FVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNS 539
F + FK FH+GQ++ +L+VPYDKS+ HPA+L +KYG+S E +A +REWLLMKRNS
Sbjct: 480 FAQNFKKFHVGQKLQKELQVPYDKSKTHPAALTTKKYGLSSLESLKAVMSREWLLMKRNS 539
Query: 540 FVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTV 599
F++IFK FQL + I MT++ RT+M + S+Y GAL SL+ IMFNGF E +T+
Sbjct: 540 FLFIFKAFQLFVLGFITMTLFLRTKMPHEKFSDTSKYVGALTASLITIMFNGFGELQLTI 599
Query: 600 LRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQF 659
+LPIFYKQRD LF+P+W + L +L++P+S+++S++W+ LTYY +G+ PAA RFFKQF
Sbjct: 600 DKLPIFYKQRDFLFFPAWTYGLANIILKVPLSLMESSLWIVLTYYVVGFAPAAGRFFKQF 659
Query: 660 LAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYY 719
LA+F H M+L L+RL+ A+ R+ V++NT G F+LL++ GGF++++ DI+P+ WGY+
Sbjct: 660 LAYFWTHQMALALFRLLGAILRSMVVANTFGMFVLLLIFLFGGFLVSRKDIKPWWIWGYW 719
Query: 720 ISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALT 779
SPMMY +L VNEFL RW N D SI+ PTIGK L+ +G+ T YW+ +GA+
Sbjct: 720 TSPMMYSNNALSVNEFLASRWAIPNNDSSISAPTIGKAFLQSKGYFTGEWGYWLSIGAMI 779
Query: 780 GYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEK 813
G+ +FN L++ AL +L PIG S STV+ +D K
Sbjct: 780 GFMIVFNILYLCALTFLRPIG-SASTVVSDDDTK 812
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 959 bits (2479), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/790 (58%), Positives = 605/790 (76%), Gaps = 11/790 (1%)
Query: 38 WNAPDNVFSRS-------ERQDDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVV---K 87
W+A + VFSRS + +DDEE LRWAA+E+LPTYDR+++ +L V E G K
Sbjct: 30 WSADNGVFSRSRASSSGEDGEDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGGGEAGK 89
Query: 88 HEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEG 147
VDV +L Q+++ LLE ++++ E+DNE+FL +++ R DRVGI+IP IEVR++HL E
Sbjct: 90 KVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIEVRFEHLEAEA 149
Query: 148 DVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPG 207
+V VG LPT+LN N LE A L ++P+KK+++ IL DVSGIVKP RMTLLLGPPG
Sbjct: 150 EVRVGNSGLPTVLNSMTNKLEGAANALGILPNKKQTMPILHDVSGIVKPRRMTLLLGPPG 209
Query: 208 AGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLD 267
+GKTTL+LALAG+LGKD++ SG++TY GH++ +FVPQRT AYISQHDLH GEMTVRETL
Sbjct: 210 SGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLS 269
Query: 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327
FS RC GVG+R+++L ELSRREK A IKPD +IDAFMKA A+ GQET+L+TDY+LKILGL
Sbjct: 270 FSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLITDYILKILGL 329
Query: 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQ 387
DICADTMVGD+M RGISGGQ+KRVTTGEMLVG AN L+MDEISTGLDSSTTFQI K L+Q
Sbjct: 330 DICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVKSLRQ 389
Query: 388 MVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKG 447
+HIL T +++LLQPAPETYDLFDDIILLS+GQIVYQGPR+ VLEFFE MGFKCPERKG
Sbjct: 390 AIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKCPERKG 449
Query: 448 VADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAH 507
VADFLQEVTS+KDQ+QYW + ++PYRY+PV DF F+SFH G+ IA++L P+DKS+ H
Sbjct: 450 VADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELATPFDKSKNH 509
Query: 508 PASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSV 567
PA+L +YG+S EL +A RE+LLMKRNSFVYIF+ QL +S I MTV+FRT+M
Sbjct: 510 PAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFRTKMHR 569
Query: 568 GDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLR 627
+ G + GALFFS++ IMFNG +E +T+ +LP+F+KQRD LF+P+W + +P W+L+
Sbjct: 570 DSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILK 629
Query: 628 IPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISN 687
IP+S ++ +V ++YY IG+DP+A RFFKQ+L +I+ M+ L+R V R +++N
Sbjct: 630 IPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARNMIVAN 689
Query: 688 TLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDP 747
G+F+LLI M LGGF++ ++ ++ + WGY+ISPMMY Q ++ VNEFLG WD + +
Sbjct: 690 VFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWD-KVLNN 748
Query: 748 SINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVI 807
S++ T+G L+ RG E+ WYWIG GAL G+ LFN LF AL YL P G S +V
Sbjct: 749 SLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQPSVS 808
Query: 808 EEDGEKQRAS 817
EE+ ++++A+
Sbjct: 809 EEELKEKQAN 818
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 824 | ||||||
| 359481989 | 1434 | PREDICTED: pleiotropic drug resistance p | 0.843 | 0.484 | 0.738 | 0.0 | |
| 356572530 | 1437 | PREDICTED: ABC transporter G family memb | 0.968 | 0.555 | 0.718 | 0.0 | |
| 359486942 | 1447 | PREDICTED: pleiotropic drug resistance p | 0.967 | 0.550 | 0.729 | 0.0 | |
| 359486907 | 1449 | PREDICTED: pleiotropic drug resistance p | 0.973 | 0.553 | 0.718 | 0.0 | |
| 359486909 | 1437 | PREDICTED: pleiotropic drug resistance p | 0.973 | 0.558 | 0.718 | 0.0 | |
| 359486905 | 1442 | PREDICTED: pleiotropic drug resistance p | 0.968 | 0.553 | 0.716 | 0.0 | |
| 359486911 | 1438 | PREDICTED: pleiotropic drug resistance p | 0.967 | 0.554 | 0.711 | 0.0 | |
| 224069796 | 1463 | predicted protein [Populus trichocarpa] | 0.966 | 0.544 | 0.727 | 0.0 | |
| 449451112 | 1455 | PREDICTED: ABC transporter G family memb | 0.991 | 0.561 | 0.697 | 0.0 | |
| 449511856 | 1455 | PREDICTED: ABC transporter G family memb | 0.991 | 0.561 | 0.697 | 0.0 |
| >gi|359481989|ref|XP_002277172.2| PREDICTED: pleiotropic drug resistance protein 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1268 bits (3280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 582/788 (73%), Positives = 690/788 (87%)
Query: 36 EVWNAPDNVFSRSERQDDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNL 95
EVW AP +VF+RS RQDDEEELRWAAIERLPTYDRL++GML QVL++G+VV +VDV+ L
Sbjct: 27 EVWTAPPDVFNRSGRQDDEEELRWAAIERLPTYDRLRRGMLRQVLDNGRVVTDDVDVTKL 86
Query: 96 AVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRA 155
VQDKK+L+ESILK+VE+DNEKFL R+R RTDRVGIE PKIEVRY +LS+EGDV+VG+RA
Sbjct: 87 GVQDKKQLMESILKVVEDDNEKFLHRLRDRTDRVGIETPKIEVRYQNLSIEGDVYVGSRA 146
Query: 156 LPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLML 215
LPTLLN LN +E+ LGL+HL PSKKR ++ILKDVSGIVKPSRMTLLLGPP +GKTTL+L
Sbjct: 147 LPTLLNATLNTIEAVLGLIHLAPSKKRKIQILKDVSGIVKPSRMTLLLGPPSSGKTTLLL 206
Query: 216 ALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 275
ALAGKL DL+ SGK+TYCGHEL+EF+PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV
Sbjct: 207 ALAGKLDHDLKVSGKVTYCGHELDEFIPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 266
Query: 276 GTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335
GTRYE+LAELSRRE++AGIKPDPEIDAFMKA A++GQETSLVTDYVLKILGLDICAD MV
Sbjct: 267 GTRYEMLAELSRREREAGIKPDPEIDAFMKATAMSGQETSLVTDYVLKILGLDICADIMV 326
Query: 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVT 395
GD+MRRGISGGQKKRVTTGEMLVG A VL MDEISTGLDSSTTFQI KF++QMVHI+DVT
Sbjct: 327 GDDMRRGISGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQIVKFMRQMVHIMDVT 386
Query: 396 MIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455
MI++LLQPAPETYDLFDDIILLS+GQIVYQGPR+NVLEFFE+MGF+CPERKGVADFLQEV
Sbjct: 387 MIISLLQPAPETYDLFDDIILLSDGQIVYQGPRENVLEFFEYMGFRCPERKGVADFLQEV 446
Query: 456 TSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEK 515
TSKKDQEQYW+++NQPY + V DFVE F SFH+GQQ++++L VPYDK++ HPA+LV EK
Sbjct: 447 TSKKDQEQYWYKRNQPYTHASVPDFVEAFNSFHVGQQLSAELSVPYDKTRTHPAALVTEK 506
Query: 516 YGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSR 575
YGIS +ELF+ACFAREWLLMKRNSFVYIFKT Q+T MSLI +TV+ RT+M G + G +
Sbjct: 507 YGISNYELFKACFAREWLLMKRNSFVYIFKTTQITIMSLIALTVFLRTQMPHGTLADGGK 566
Query: 576 YFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDS 635
+FGALFFSL+N+MFNG AE AMTV RLP+F+KQRD LFYP+WAFALPIW+LRIP+S ++S
Sbjct: 567 FFGALFFSLINVMFNGMAELAMTVFRLPVFFKQRDFLFYPAWAFALPIWVLRIPLSFMES 626
Query: 636 TIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILL 695
IW+ LTYYTIG+ PAASRFF+QFLAFF IH M+L L+R +AAVGRT+V++NTLGTF LL
Sbjct: 627 GIWIILTYYTIGFAPAASRFFRQFLAFFGIHQMALSLFRFIAAVGRTQVVANTLGTFTLL 686
Query: 696 IMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIG 755
++ LGGF+++K+DIEPF+ WGYYISPMMYGQ ++++NEFL RW A N D N+PT+G
Sbjct: 687 MVFVLGGFIISKNDIEPFMIWGYYISPMMYGQNAIVMNEFLDKRWAAPNTDSRFNEPTVG 746
Query: 756 KVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQR 815
KVLLK RGF + W+WI V AL +S LFN LF+AAL +LNP+GD+ + ++ E +
Sbjct: 747 KVLLKSRGFFVDEYWFWICVVALLAFSLLFNVLFVAALTFLNPLGDTKNAILNEGTDMAV 806
Query: 816 ASGHEAEG 823
+ E G
Sbjct: 807 INSSEIVG 814
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572530|ref|XP_003554421.1| PREDICTED: ABC transporter G family member 39-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1258 bits (3255), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 583/811 (71%), Positives = 696/811 (85%), Gaps = 13/811 (1%)
Query: 2 SATVADDLARSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRSER---QDDEEELR 58
SA DDLA +S+ SRRSW +AS R+ W A +VF+ S R +DDEEEL+
Sbjct: 3 SALAGDDLA----------VSTSSRRSWTTASFRDAWTAAPDVFNVSGRHVYEDDEEELK 52
Query: 59 WAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKF 118
WAAI+RLPT++R++KG+L VL+DG V+ EVDVSNL + DKK L++SILKIVEEDNEKF
Sbjct: 53 WAAIDRLPTFERMRKGVLKHVLDDGHVMLDEVDVSNLCLHDKKLLIDSILKIVEEDNEKF 112
Query: 119 LKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVP 178
L+R+R+R DRVGIEIPKIEVR ++LSVEGDVHVG+RALPTLLN LN ES LG+ HL P
Sbjct: 113 LRRLRNRVDRVGIEIPKIEVRCENLSVEGDVHVGSRALPTLLNATLNAFESVLGMFHLAP 172
Query: 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238
SKKR ++ILKDVSGIVKPSRMTLLLGPP +GKTTL+LALAGKL +DLR SG+ITYCGHEL
Sbjct: 173 SKKREIQILKDVSGIVKPSRMTLLLGPPSSGKTTLLLALAGKLDRDLRVSGRITYCGHEL 232
Query: 239 NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
NEFVPQ+TCAYISQHD+H+GEMTVRETLDFSGRCLGVGTRYE L ELSRRE++AGIKPDP
Sbjct: 233 NEFVPQKTCAYISQHDIHYGEMTVRETLDFSGRCLGVGTRYEALVELSRREREAGIKPDP 292
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
EIDAFMKA+A++GQ+T+LVTDYVLKILGLDICAD +VGDEMRRGISGGQKKRVTTGEMLV
Sbjct: 293 EIDAFMKAIALSGQKTNLVTDYVLKILGLDICADIVVGDEMRRGISGGQKKRVTTGEMLV 352
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
G A L+MDEISTGLDSSTTFQICKF++QMVH++DVTM+++LLQPAPET++LFDDIILLS
Sbjct: 353 GPAKALFMDEISTGLDSSTTFQICKFMRQMVHVMDVTMVISLLQPAPETFELFDDIILLS 412
Query: 419 EGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVS 478
EGQIVYQGPR+N LEFFEHMGFKCPERKGV DFLQEVTSKKDQ+QYW RK++PYRY+ VS
Sbjct: 413 EGQIVYQGPRENGLEFFEHMGFKCPERKGVTDFLQEVTSKKDQQQYWSRKDEPYRYVSVS 472
Query: 479 DFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRN 538
+FV+ F SF +G+Q+A++L VPYDK QAHPA+LVK+KYGI+ WELF+ACF+REWLLMKR+
Sbjct: 473 EFVQAFSSFDIGEQLATELGVPYDKRQAHPAALVKDKYGITNWELFKACFSREWLLMKRS 532
Query: 539 SFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMT 598
SFVYIFKT Q+T MS+I TV+ RTEMSVG + G ++FGALFFSL+N+MFNG AE +MT
Sbjct: 533 SFVYIFKTTQITIMSIITFTVFLRTEMSVGTVEDGQKFFGALFFSLINVMFNGMAELSMT 592
Query: 599 VLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQ 658
V RLP+FYKQRD FYP+WAF LPIWLLRIP+SI++S IW+ALTYYTIG+ P+ASRF +Q
Sbjct: 593 VFRLPVFYKQRDFRFYPAWAFGLPIWLLRIPLSIMESGIWIALTYYTIGFAPSASRFIRQ 652
Query: 659 FLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGY 718
FLA F+IH M+L L+R +AA GRT V++NTLGT L ++ LGGFV+AKDDIEP++ WGY
Sbjct: 653 FLALFAIHQMALSLFRFLAAAGRTLVVANTLGTLSLQLVFVLGGFVIAKDDIEPWMMWGY 712
Query: 719 YISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGAL 778
Y+SPMMYGQ ++++NEFL RW N DP IN PT+GKVLLK RGF TE W+WI +GAL
Sbjct: 713 YLSPMMYGQNAIVMNEFLDKRWSKPNTDPRINAPTVGKVLLKSRGFYTEEYWFWICIGAL 772
Query: 779 TGYSFLFNFLFIAALAYLNPIGDSNSTVIEE 809
G+S LFN LFI AL YLNP+G S + + +E
Sbjct: 773 LGFSLLFNLLFIVALTYLNPLGYSKAVIADE 803
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486942|ref|XP_002265628.2| PREDICTED: pleiotropic drug resistance protein 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1256 bits (3249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 583/799 (72%), Positives = 692/799 (86%), Gaps = 2/799 (0%)
Query: 11 RSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRSERQDDEEELRWAAIERLPTYDR 70
RS S R +S+ SGSRRSWASASIREV +A +VF +S R+DDEEEL+WAAIERLPT++R
Sbjct: 12 RSTSSRS-KSLGSGSRRSWASASIREVVSAQGDVF-QSRREDDEEELKWAAIERLPTFER 69
Query: 71 LKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVG 130
L+KGML QVL+DGKVV EVD +NL +Q++K L+ESILK+VEEDNEKFL R+R RTDRVG
Sbjct: 70 LRKGMLKQVLDDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVG 129
Query: 131 IEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDV 190
+EIPKIEV ++HLS+EGD +VGTRALPTLLN +N +E LGL+ L PSKKR V+ILKDV
Sbjct: 130 VEIPKIEVWFEHLSIEGDAYVGTRALPTLLNFTMNFIEGILGLIRLSPSKKRVVKILKDV 189
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250
SGIVKPSRMTLLLGPP +GKTTL+ ALAGK+ KDLR GKITYCGHEL+EFVPQRTCAYI
Sbjct: 190 SGIVKPSRMTLLLGPPASGKTTLLQALAGKMDKDLRMEGKITYCGHELSEFVPQRTCAYI 249
Query: 251 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVA 310
SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK+AGIKPDPEIDAFMKA A+A
Sbjct: 250 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKEAGIKPDPEIDAFMKATAMA 309
Query: 311 GQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIS 370
GQETSLVTDYVLKILGLDICAD +VGD+MRRGISGG+KKRVT GEMLVG A L+MDEIS
Sbjct: 310 GQETSLVTDYVLKILGLDICADIVVGDDMRRGISGGEKKRVTIGEMLVGPAKALFMDEIS 369
Query: 371 TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDN 430
TGLDSSTTFQ+ KF++QMVHI++VTMI++LLQPAPETYDLFD IILL EGQIVYQGPR+N
Sbjct: 370 TGLDSSTTFQVVKFMRQMVHIMEVTMIISLLQPAPETYDLFDGIILLCEGQIVYQGPREN 429
Query: 431 VLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMG 490
+LEFFE +GFKCPERKGVADFLQEVTS+KDQEQYWFRKN+PYRYI V +FV+ F SFH+G
Sbjct: 430 ILEFFESIGFKCPERKGVADFLQEVTSRKDQEQYWFRKNEPYRYISVPEFVQHFNSFHIG 489
Query: 491 QQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLT 550
Q+++ D +PYD+S+ HPA+LV EKYGIS WELF+ACFAREWLLMKRNSF+YIFKT Q+T
Sbjct: 490 QKLSDDFGIPYDRSRTHPAALVTEKYGISNWELFKACFAREWLLMKRNSFIYIFKTTQIT 549
Query: 551 FMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRD 610
MS+I MTV+FRTEM G + G +++GALF+SL+N+MFNG AE A+T+ RLP+F+KQRD
Sbjct: 550 IMSVIAMTVFFRTEMKHGQLQDGVKFYGALFYSLINVMFNGLAELALTIFRLPVFFKQRD 609
Query: 611 HLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSL 670
LFYP+WAFALPIW+LRIP+S+++S IW+ LTYYTIGY PAASRFF+Q LAFF +H M+L
Sbjct: 610 FLFYPAWAFALPIWVLRIPLSLMESGIWIILTYYTIGYAPAASRFFRQLLAFFVVHQMAL 669
Query: 671 PLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSL 730
L+R +AA+GRT +++NTL TF LL++ LGGFV++KDDI+P++ WGYY SPMMYGQ +L
Sbjct: 670 SLFRFIAALGRTLIVANTLATFTLLLVSVLGGFVVSKDDIKPWMIWGYYASPMMYGQNAL 729
Query: 731 LVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFI 790
++NEFL RW N I +PT+GK LLK RG + WYWI VGAL G+S LFN FI
Sbjct: 730 VINEFLDDRWSTPNIYTRIPEPTVGKALLKARGMFVDGYWYWISVGALLGFSLLFNICFI 789
Query: 791 AALAYLNPIGDSNSTVIEE 809
AAL YL+P+GDS S +I+E
Sbjct: 790 AALTYLDPLGDSKSVIIDE 808
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486907|ref|XP_002267345.2| PREDICTED: pleiotropic drug resistance protein 2-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1251 bits (3237), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/804 (71%), Positives = 697/804 (86%), Gaps = 2/804 (0%)
Query: 11 RSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRSERQDDEEELRWAAIERLPTYDR 70
RS S R +S++SGSRRSWASASI EV +A +VF +S R+DDEEEL+WAAIERLPT++R
Sbjct: 12 RSMSSRR-KSLASGSRRSWASASILEVLSAQGDVF-QSRREDDEEELKWAAIERLPTFER 69
Query: 71 LKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVG 130
L+KGML QVL+DGKVV EVD +NL +Q++K L+ESILK+VEEDNEKFL R+R RTDRVG
Sbjct: 70 LRKGMLKQVLDDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVG 129
Query: 131 IEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDV 190
+EIPKIEVR++HLSVEGD +VGTRALPTLLN +N +E LGL+ L SKKR V+ILKDV
Sbjct: 130 VEIPKIEVRFEHLSVEGDAYVGTRALPTLLNSTMNFIEGILGLIRLSSSKKRVVKILKDV 189
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250
SGIVKPSRMTLLLGPP +GKTTL+ ALAGK+ KDLR GKITYCGHEL+EFVPQRTCAYI
Sbjct: 190 SGIVKPSRMTLLLGPPASGKTTLLQALAGKMDKDLRMEGKITYCGHELSEFVPQRTCAYI 249
Query: 251 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVA 310
SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK++ IKPDPEIDAFMKA A+A
Sbjct: 250 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKESAIKPDPEIDAFMKATAMA 309
Query: 311 GQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIS 370
GQETSLVTDYVLK+LGLDICAD ++GD+MRRGISGG+KKRVTTGEMLVG A L+MDEIS
Sbjct: 310 GQETSLVTDYVLKMLGLDICADIVLGDDMRRGISGGEKKRVTTGEMLVGPAKALFMDEIS 369
Query: 371 TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDN 430
TGLDSSTTFQI KF++QMVHI++VTMI++LLQPAPETYDLFD IILL EGQIVYQGPR+N
Sbjct: 370 TGLDSSTTFQIVKFMRQMVHIMEVTMIISLLQPAPETYDLFDAIILLCEGQIVYQGPREN 429
Query: 431 VLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMG 490
+LEFFE +GFKCP+RKGVADFLQEVTS+K+QEQYWFR N+PY+YI V +F + F SFH+G
Sbjct: 430 ILEFFESVGFKCPKRKGVADFLQEVTSRKEQEQYWFRHNEPYKYISVPEFAQHFNSFHIG 489
Query: 491 QQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLT 550
Q+++ DL +PY+KS+ HPA+LV EKYGIS WELF+ACFAREWLLMKRNSF+YIFKT Q+T
Sbjct: 490 QKLSDDLGIPYNKSRTHPAALVTEKYGISNWELFKACFAREWLLMKRNSFIYIFKTTQIT 549
Query: 551 FMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRD 610
MS+I MTV+FRTEM G + G +++GALF+SL+N+MFNG AE A+T+ RLP+F+KQRD
Sbjct: 550 IMSVIAMTVFFRTEMKHGQLQDGVKFYGALFYSLINVMFNGMAELALTLFRLPVFFKQRD 609
Query: 611 HLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSL 670
LFYP+WAFALPIW+LRIP+S+++S IW+ LTYYTIG+ P+ASRFF+Q LAFF +H M+L
Sbjct: 610 FLFYPAWAFALPIWVLRIPLSLMESGIWIILTYYTIGFAPSASRFFRQLLAFFGVHQMAL 669
Query: 671 PLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSL 730
L+R +AA+GRT++++NTLGTF LL++ LGGF++AKDDIEP++ WGYY SPM YGQ +L
Sbjct: 670 SLFRFIAALGRTQIVANTLGTFTLLLVFVLGGFIVAKDDIEPWMIWGYYASPMTYGQNAL 729
Query: 731 LVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFI 790
++NEFL RW A N D I +PT+GK LLK RG + WYWI VGAL G+S LFN FI
Sbjct: 730 VINEFLDDRWSAPNIDQRIPEPTVGKALLKARGMFVDGYWYWICVGALMGFSLLFNICFI 789
Query: 791 AALAYLNPIGDSNSTVIEEDGEKQ 814
AL YL+P+GDS S +I+E+ E++
Sbjct: 790 VALTYLDPLGDSKSVIIDEENEEK 813
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486909|ref|XP_003633487.1| PREDICTED: pleiotropic drug resistance protein 2-like isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1250 bits (3235), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/804 (71%), Positives = 697/804 (86%), Gaps = 2/804 (0%)
Query: 11 RSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRSERQDDEEELRWAAIERLPTYDR 70
RS S R +S++SGSRRSWASASI EV +A +VF +S R+DDEEEL+WAAIERLPT++R
Sbjct: 12 RSMSSRR-KSLASGSRRSWASASILEVLSAQGDVF-QSRREDDEEELKWAAIERLPTFER 69
Query: 71 LKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVG 130
L+KGML QVL+DGKVV EVD +NL +Q++K L+ESILK+VEEDNEKFL R+R RTDRVG
Sbjct: 70 LRKGMLKQVLDDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVG 129
Query: 131 IEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDV 190
+EIPKIEVR++HLSVEGD +VGTRALPTLLN +N +E LGL+ L SKKR V+ILKDV
Sbjct: 130 VEIPKIEVRFEHLSVEGDAYVGTRALPTLLNSTMNFIEGILGLIRLSSSKKRVVKILKDV 189
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250
SGIVKPSRMTLLLGPP +GKTTL+ ALAGK+ KDLR GKITYCGHEL+EFVPQRTCAYI
Sbjct: 190 SGIVKPSRMTLLLGPPASGKTTLLQALAGKMDKDLRMEGKITYCGHELSEFVPQRTCAYI 249
Query: 251 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVA 310
SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK++ IKPDPEIDAFMKA A+A
Sbjct: 250 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKESAIKPDPEIDAFMKATAMA 309
Query: 311 GQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIS 370
GQETSLVTDYVLK+LGLDICAD ++GD+MRRGISGG+KKRVTTGEMLVG A L+MDEIS
Sbjct: 310 GQETSLVTDYVLKMLGLDICADIVLGDDMRRGISGGEKKRVTTGEMLVGPAKALFMDEIS 369
Query: 371 TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDN 430
TGLDSSTTFQI KF++QMVHI++VTMI++LLQPAPETYDLFD IILL EGQIVYQGPR+N
Sbjct: 370 TGLDSSTTFQIVKFMRQMVHIMEVTMIISLLQPAPETYDLFDAIILLCEGQIVYQGPREN 429
Query: 431 VLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMG 490
+LEFFE +GFKCP+RKGVADFLQEVTS+K+QEQYWFR N+PY+YI V +F + F SFH+G
Sbjct: 430 ILEFFESVGFKCPKRKGVADFLQEVTSRKEQEQYWFRHNEPYKYISVPEFAQHFNSFHIG 489
Query: 491 QQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLT 550
Q+++ DL +PY+KS+ HPA+LV EKYGIS WELF+ACFAREWLLMKRNSF+YIFKT Q+T
Sbjct: 490 QKLSDDLGIPYNKSRTHPAALVTEKYGISNWELFKACFAREWLLMKRNSFIYIFKTTQIT 549
Query: 551 FMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRD 610
MS+I MTV+FRTEM G + G +++GALF+SL+N+MFNG AE A+T+ RLP+F+KQRD
Sbjct: 550 IMSVIAMTVFFRTEMKHGQLQDGVKFYGALFYSLINVMFNGMAELALTLFRLPVFFKQRD 609
Query: 611 HLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSL 670
LFYP+WAFALPIW+LRIP+S+++S IW+ LTYYTIG+ P+ASRFF+Q LAFF +H M+L
Sbjct: 610 FLFYPAWAFALPIWVLRIPLSLMESGIWIILTYYTIGFAPSASRFFRQLLAFFGVHQMAL 669
Query: 671 PLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSL 730
L+R +AA+GRT++++NTLGTF LL++ LGGF++AKDDIEP++ WGYY SPM YGQ +L
Sbjct: 670 SLFRFIAALGRTQIVANTLGTFTLLLVFVLGGFIVAKDDIEPWMIWGYYASPMTYGQNAL 729
Query: 731 LVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFI 790
++NEFL RW A N D I +PT+GK LLK RG + WYWI VGAL G+S LFN FI
Sbjct: 730 VINEFLDDRWSAPNIDQRIPEPTVGKALLKARGMFVDGYWYWICVGALMGFSLLFNICFI 789
Query: 791 AALAYLNPIGDSNSTVIEEDGEKQ 814
AL YL+P+GDS S +I+E+ E++
Sbjct: 790 VALTYLDPLGDSKSVIIDEENEEK 813
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486905|ref|XP_003633486.1| PREDICTED: pleiotropic drug resistance protein 2-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1242 bits (3214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 576/804 (71%), Positives = 695/804 (86%), Gaps = 6/804 (0%)
Query: 11 RSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRSERQDDEEELRWAAIERLPTYDR 70
RS S R +S++SGSRRSWASASI EV +A +VF +S R+DDEEEL+WAAIERLPT++R
Sbjct: 12 RSMSSRR-KSLASGSRRSWASASILEVLSAQGDVF-QSRREDDEEELKWAAIERLPTFER 69
Query: 71 LKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVG 130
L+KGML QVL+DGKVV EVD +NL +Q++K L+ESILK+VEEDNEKFL R+R RTDRVG
Sbjct: 70 LRKGMLKQVLDDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVG 129
Query: 131 IEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDV 190
+EIPKIEVR++HLSVEGD +VGTRALPTLLN +N +E LGL+ L SKKR V+ILKDV
Sbjct: 130 VEIPKIEVRFEHLSVEGDAYVGTRALPTLLNSTMNFIEGILGLIRLSSSKKRVVKILKDV 189
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250
SGIVKPSRMTLLLGPP +GKTTL+ ALAGK+ KDLR GKITYCGHEL+EFVPQRTCAYI
Sbjct: 190 SGIVKPSRMTLLLGPPASGKTTLLQALAGKMDKDLRMEGKITYCGHELSEFVPQRTCAYI 249
Query: 251 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVA 310
SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK++ IKPDPEIDAFMKA A+A
Sbjct: 250 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKESAIKPDPEIDAFMKATAMA 309
Query: 311 GQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIS 370
GQETSLVTDYVLK+LGLDICAD ++GD+MRRGISGG+KKRVTTGEMLVG A L+MDEIS
Sbjct: 310 GQETSLVTDYVLKMLGLDICADIVLGDDMRRGISGGEKKRVTTGEMLVGPAKALFMDEIS 369
Query: 371 TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDN 430
TGLDSSTTFQI KF++QMVHI++VTMI++LLQPAPETYDLFD IILL EGQIVYQGPR+N
Sbjct: 370 TGLDSSTTFQIVKFMRQMVHIMEVTMIISLLQPAPETYDLFDAIILLCEGQIVYQGPREN 429
Query: 431 VLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMG 490
+LEFFE +GFKCP+RKGVADFLQEVTS+K+QEQYWFR N+PY+YI V +F + F SFH+G
Sbjct: 430 ILEFFESVGFKCPKRKGVADFLQEVTSRKEQEQYWFRHNEPYKYISVPEFAQHFNSFHIG 489
Query: 491 QQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLT 550
Q+++ DL +PY+KS+ HPA+LV EKYGIS WELF+ACFAREWLLMKRNSF+YIFKT Q+T
Sbjct: 490 QKLSDDLGIPYNKSRTHPAALVTEKYGISNWELFKACFAREWLLMKRNSFIYIFKTTQIT 549
Query: 551 FMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRD 610
MS+I MTV+FRTEM G + G +++GALF+SL+N+MFNG AE A+T+ RLP+F+KQRD
Sbjct: 550 IMSVIAMTVFFRTEMKHGQLQDGVKFYGALFYSLINVMFNGMAELALTLFRLPVFFKQRD 609
Query: 611 HLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSL 670
LFYP+WAFALPIW+LRIP+S+++S IW+ LTYYTIG+ P+ASRFF+Q LAFF +H M+L
Sbjct: 610 FLFYPAWAFALPIWVLRIPLSLMESGIWIILTYYTIGFAPSASRFFRQLLAFFGVHQMAL 669
Query: 671 PLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSL 730
L+R +AA+GRT++++NTLGTF LL++ LGGF++AKDDIEP++ WGYY SPM YGQ +L
Sbjct: 670 SLFRFIAALGRTQIVANTLGTFTLLLVFVLGGFIVAKDDIEPWMIWGYYASPMTYGQNAL 729
Query: 731 LVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFI 790
++NEFL RW A I +PT+GK LLK RG + WYWI VGAL G+S LFN FI
Sbjct: 730 VINEFLDDRWSAVR----IPEPTVGKALLKARGMFVDGYWYWICVGALMGFSLLFNICFI 785
Query: 791 AALAYLNPIGDSNSTVIEEDGEKQ 814
AL YL+P+GDS S +I+E+ E++
Sbjct: 786 VALTYLDPLGDSKSVIIDEENEEK 809
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486911|ref|XP_003633488.1| PREDICTED: pleiotropic drug resistance protein 2-like isoform 4 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1235 bits (3195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/804 (71%), Positives = 692/804 (86%), Gaps = 7/804 (0%)
Query: 11 RSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRSERQDDEEELRWAAIERLPTYDR 70
RS S R +S++SGSRRSWASASI EV +A +VF +S R+DDEEEL+WAAIERLPT++R
Sbjct: 12 RSMSSRR-KSLASGSRRSWASASILEVLSAQGDVF-QSRREDDEEELKWAAIERLPTFER 69
Query: 71 LKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVG 130
L+KGML QVL+DGKVV EVD +NL +Q++K L+ESILK+VEEDNEKFL R+R RTDRVG
Sbjct: 70 LRKGMLKQVLDDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVG 129
Query: 131 IEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDV 190
+EIPKIEVR++HLSVEGD +VGTRALPTLLN +N +E LGL+ L SKKR V+ILKDV
Sbjct: 130 VEIPKIEVRFEHLSVEGDAYVGTRALPTLLNSTMNFIEGILGLIRLSSSKKRVVKILKDV 189
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250
SGIVKPSRMTLLLGPP +GKTTL+ ALAGK+ KDLR GKITYCGHEL+EFVPQRTCAYI
Sbjct: 190 SGIVKPSRMTLLLGPPASGKTTLLQALAGKMDKDLRMEGKITYCGHELSEFVPQRTCAYI 249
Query: 251 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVA 310
SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK++ IKPDPEIDAFMKA A+A
Sbjct: 250 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKESAIKPDPEIDAFMKATAMA 309
Query: 311 GQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIS 370
GQETSLVTDYVLK+LGLDICAD ++GD+MRRGISGG+KKRVTTG + L+MDEIS
Sbjct: 310 GQETSLVTDYVLKMLGLDICADIVLGDDMRRGISGGEKKRVTTG-----MSKALFMDEIS 364
Query: 371 TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDN 430
TGLDSSTTFQI KF++QMVHI++VTMI++LLQPAPETYDLFD IILL EGQIVYQGPR+N
Sbjct: 365 TGLDSSTTFQIVKFMRQMVHIMEVTMIISLLQPAPETYDLFDAIILLCEGQIVYQGPREN 424
Query: 431 VLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMG 490
+LEFFE +GFKCP+RKGVADFLQEVTS+K+QEQYWFR N+PY+YI V +F + F SFH+G
Sbjct: 425 ILEFFESVGFKCPKRKGVADFLQEVTSRKEQEQYWFRHNEPYKYISVPEFAQHFNSFHIG 484
Query: 491 QQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLT 550
Q+++ DL +PY+KS+ HPA+LV EKYGIS WELF+ACFAREWLLMKRNSF+YIFKT Q+T
Sbjct: 485 QKLSDDLGIPYNKSRTHPAALVTEKYGISNWELFKACFAREWLLMKRNSFIYIFKTTQIT 544
Query: 551 FMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRD 610
MS+I MTV+FRTEM G + G +++GALF+SL+N+MFNG AE A+T+ RLP+F+KQRD
Sbjct: 545 IMSVIAMTVFFRTEMKHGQLQDGVKFYGALFYSLINVMFNGMAELALTLFRLPVFFKQRD 604
Query: 611 HLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSL 670
LFYP+WAFALPIW+LRIP+S+++S IW+ LTYYTIG+ P+ASRFF+Q LAFF +H M+L
Sbjct: 605 FLFYPAWAFALPIWVLRIPLSLMESGIWIILTYYTIGFAPSASRFFRQLLAFFGVHQMAL 664
Query: 671 PLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSL 730
L+R +AA+GRT++++NTLGTF LL++ LGGF++AKDDIEP++ WGYY SPM YGQ +L
Sbjct: 665 SLFRFIAALGRTQIVANTLGTFTLLLVFVLGGFIVAKDDIEPWMIWGYYASPMTYGQNAL 724
Query: 731 LVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFI 790
++NEFL RW A N D I +PT+GK LLK RG + WYWI VGAL G+S LFN FI
Sbjct: 725 VINEFLDDRWSAPNIDQRIPEPTVGKALLKARGMFVDGYWYWICVGALMGFSLLFNICFI 784
Query: 791 AALAYLNPIGDSNSTVIEEDGEKQ 814
AL YL+P+GDS S +I+E+ E++
Sbjct: 785 VALTYLDPLGDSKSVIIDEENEEK 808
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224069796|ref|XP_002326416.1| predicted protein [Populus trichocarpa] gi|222833609|gb|EEE72086.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1229 bits (3180), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/804 (72%), Positives = 705/804 (87%), Gaps = 8/804 (0%)
Query: 29 WASASIREVWNAPDNVFS-----RSERQDDEEELRWAAIERLPTYDRLKKGMLNQVLEDG 83
WASASIRE W AP +VFS R ++ DDEEELRWAAIERLPTYDR++KG+L QVL++G
Sbjct: 27 WASASIREAWTAPVDVFSQNSGRRQQQMDDEEELRWAAIERLPTYDRMRKGVLRQVLDNG 86
Query: 84 KVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHL 143
++V+ EVDV+ L +QDKK+L+E+IL++VEEDNEKFL+R+R RTDRVGIEIPKIEVR+ HL
Sbjct: 87 RMVQSEVDVTRLGMQDKKQLMENILRVVEEDNEKFLRRVRDRTDRVGIEIPKIEVRFQHL 146
Query: 144 SVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLL 203
SVEG+V VG+RALPTLLN LN +ES LGL+ L PSKKR+V+IL+D+SGIVKPSRM LLL
Sbjct: 147 SVEGEVFVGSRALPTLLNATLNAVESILGLVGLAPSKKRTVQILQDISGIVKPSRMALLL 206
Query: 204 GPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263
GPP +GKTT+++ALAGKL ++LR+SGKITYCGHEL EFVPQR+CAYISQHDLH+GEMTVR
Sbjct: 207 GPPSSGKTTMLMALAGKLHRELRSSGKITYCGHELKEFVPQRSCAYISQHDLHYGEMTVR 266
Query: 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 323
ETLDFSGRCLGVGTRYELLAELSRREK+AGIKPDPEIDAFMKA A++GQE SLVTDY LK
Sbjct: 267 ETLDFSGRCLGVGTRYELLAELSRREKEAGIKPDPEIDAFMKATAMSGQEHSLVTDYTLK 326
Query: 324 ILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK 383
ILGLDICAD +VG++M+RGISGGQKKRVTTGEMLVG A VL MDEISTGLDS+TTFQICK
Sbjct: 327 ILGLDICADILVGNDMKRGISGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSATTFQICK 386
Query: 384 FLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCP 443
F++QMVH +DVTMIV+LLQPAPET++LFDDIILLSEGQ+VYQGPR++VLEFFEHMGF+CP
Sbjct: 387 FMRQMVHTMDVTMIVSLLQPAPETFELFDDIILLSEGQVVYQGPREHVLEFFEHMGFRCP 446
Query: 444 ERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDK 503
+RKG ADFLQEVTSKKDQEQYWFRKN PYR+I V +FV GF SFH+GQQ+ASDLR PYDK
Sbjct: 447 DRKGAADFLQEVTSKKDQEQYWFRKNIPYRFISVLEFVRGFNSFHVGQQLASDLRTPYDK 506
Query: 504 SQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRT 563
S+AHPA+LV EKYGIS WELFRACF+REWLLMKRNSF+YIFKT Q+T MS+I TV+FRT
Sbjct: 507 SRAHPAALVTEKYGISNWELFRACFSREWLLMKRNSFLYIFKTTQITIMSIIAFTVFFRT 566
Query: 564 EMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPI 623
EM VG + GG ++FGALFFSL+N+MFNG AE +MTV RLP+FYKQRD LF+P+WAF LPI
Sbjct: 567 EMKVGTVLGGQKFFGALFFSLVNVMFNGMAELSMTVFRLPVFYKQRDFLFFPAWAFGLPI 626
Query: 624 WLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTE 683
W+LRIP+S+++S IW+ +TYYTIG+ P+ASRFF+QFLAFF IH M+L L+R +AAVGRT+
Sbjct: 627 WVLRIPLSLMESAIWIIITYYTIGFAPSASRFFRQFLAFFCIHQMALALFRFIAAVGRTQ 686
Query: 684 VISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQ 743
V++NTLGTF LL++ LGGF++AKDDIEP++ WGYY SPMMYGQ ++++NEFL RW
Sbjct: 687 VVANTLGTFTLLLVFVLGGFIVAKDDIEPWMIWGYYSSPMMYGQNAIVMNEFLDERWSVN 746
Query: 744 NKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSN 803
N D + T+GKVLLK RGF T+ W+WI +GAL G+S LFN LFI AL +LNP+GDS
Sbjct: 747 NTDSNFAGETVGKVLLKARGFFTDDYWFWICIGALFGFSLLFNVLFIVALTFLNPLGDSK 806
Query: 804 STVIEEDGEKQR--ASGHE-AEGL 824
+ V+++D +K + +SG + AEG+
Sbjct: 807 AVVVDDDAKKNKKTSSGQQRAEGI 830
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451112|ref|XP_004143306.1| PREDICTED: ABC transporter G family member 39-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1227 bits (3174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/820 (69%), Positives = 702/820 (85%), Gaps = 3/820 (0%)
Query: 5 VADDLARSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRSERQDDEEELRWAAIER 64
VADDLARS S R S +S S+RSWA+ASIREVW A +VFSRS RQ+DEEEL+WAA+ER
Sbjct: 7 VADDLARSMSRR---SWASASQRSWATASIREVWQAQPDVFSRSGRQEDEEELKWAALER 63
Query: 65 LPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRH 124
LPTYDRL+KGML VL++G+VV EVDV+ + +Q+K++L+ES+LKI+EEDNEKFL+R+R
Sbjct: 64 LPTYDRLRKGMLKHVLDNGRVVHDEVDVTKIGMQEKQQLMESMLKIIEEDNEKFLRRLRD 123
Query: 125 RTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSV 184
RTDRVGIE+PK+EVRY+HL+VEG++HVG+RALPTLLNV LN+ ES LGL+ L PS+KR +
Sbjct: 124 RTDRVGIEMPKVEVRYEHLAVEGELHVGSRALPTLLNVFLNIAESVLGLVRLAPSRKRKI 183
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+ILKD+SGIVKPSRMTLLLGPP +GKTT + ALAGKL +L+ +GKITYCGHE EFVPQ
Sbjct: 184 QILKDISGIVKPSRMTLLLGPPSSGKTTFLRALAGKLENNLKETGKITYCGHEFKEFVPQ 243
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
RT AYISQHDLH+ EMTVRET DFSGRC GVGTRYE+L ELSRREK+AGIKPDPEIDAFM
Sbjct: 244 RTSAYISQHDLHNWEMTVRETFDFSGRCQGVGTRYEMLEELSRREKEAGIKPDPEIDAFM 303
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
KA++V+GQ T+L TDYVLKILGLDICAD +VG+EMRRGISGGQ+KRVTTGEMLVG A L
Sbjct: 304 KAISVSGQRTNLFTDYVLKILGLDICADIIVGNEMRRGISGGQRKRVTTGEMLVGPAKGL 363
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424
+MDEISTGLDSSTTFQICKF+KQMVHI+DVTMI++LLQPAPET+DLFDD+ILLSEG++VY
Sbjct: 364 FMDEISTGLDSSTTFQICKFMKQMVHIMDVTMIISLLQPAPETFDLFDDVILLSEGEVVY 423
Query: 425 QGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGF 484
QGPR+NVLEFFE MGFKCPERKGVADFLQEVTSKKDQEQYWF+K+QPYRY+ V +F++GF
Sbjct: 424 QGPRENVLEFFEFMGFKCPERKGVADFLQEVTSKKDQEQYWFKKSQPYRYVSVPEFIQGF 483
Query: 485 KSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIF 544
K FH+GQ++ ++L VP+DK HPA+LV +KYG+S W+LFRA F+REWLLMKRNSF+YIF
Sbjct: 484 KKFHIGQRLNTELGVPFDKRSTHPAALVTQKYGLSNWQLFRALFSREWLLMKRNSFIYIF 543
Query: 545 KTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPI 604
KT Q+T MSLI MTV+FRTEM G + GG +Y GALFFSL+N+MFNG AE A+T+ RLP+
Sbjct: 544 KTVQITIMSLITMTVFFRTEMKPGTLEGGGKYLGALFFSLINMMFNGMAELALTITRLPV 603
Query: 605 FYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFS 664
FYKQRD LF+P WAF LPIW+LRIP+S+++S IW+ LTYYTIG+ PAASRFF+QFLA+F
Sbjct: 604 FYKQRDSLFFPGWAFGLPIWVLRIPLSLMESGIWIGLTYYTIGFAPAASRFFRQFLAYFG 663
Query: 665 IHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMM 724
IH M+L L+R +AA GR +VI++T+G+F LLI+ LGGF++AK DIEP++ WGYYISPMM
Sbjct: 664 IHQMALSLFRFIAAAGRVQVIASTMGSFTLLIVFVLGGFIIAKGDIEPWMIWGYYISPMM 723
Query: 725 YGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFL 784
YGQ ++++NEFL RW+ + +P + T+GKV+L R F T + YWI VGAL G+SFL
Sbjct: 724 YGQNAIVINEFLDDRWNKDSSNPLLRGTTVGKVILASRDFYTTNKMYWICVGALFGFSFL 783
Query: 785 FNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGL 824
FN LFI AL +LNP+GDS S + +E +K+ + G+
Sbjct: 784 FNILFIMALTFLNPLGDSRSAIADEANDKKNNPYSSSRGI 823
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449511856|ref|XP_004164072.1| PREDICTED: ABC transporter G family member 39-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1227 bits (3174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/820 (69%), Positives = 702/820 (85%), Gaps = 3/820 (0%)
Query: 5 VADDLARSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRSERQDDEEELRWAAIER 64
VADDLARS S R S +S S+RSWA+ASIREVW A +VFSRS RQ+DEEEL+WAA+ER
Sbjct: 7 VADDLARSMSRR---SWASASQRSWATASIREVWQAQPDVFSRSGRQEDEEELKWAALER 63
Query: 65 LPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRH 124
LPTYDRL+KGML VL++G+VV EVDV+ + +Q+K++L+ES+LKI+EEDNEKFL+R+R
Sbjct: 64 LPTYDRLRKGMLKHVLDNGRVVHDEVDVTKIGMQEKQQLMESMLKIIEEDNEKFLRRLRD 123
Query: 125 RTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSV 184
RTDRVGIE+PK+EVRY+HL+VEG++HVG+RALPTLLNV LN+ ES LGL+ L PS+KR +
Sbjct: 124 RTDRVGIEMPKVEVRYEHLAVEGELHVGSRALPTLLNVFLNIAESVLGLVRLAPSRKRKI 183
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+ILKD+SGIVKPSRMTLLLGPP +GKTT + ALAGKL +L+ +GKITYCGHE EFVPQ
Sbjct: 184 QILKDISGIVKPSRMTLLLGPPSSGKTTFLRALAGKLENNLKETGKITYCGHEFKEFVPQ 243
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
RT AYISQHDLH+ EMTVRET DFSGRC GVGTRYE+L ELSRREK+AGIKPDPEIDAFM
Sbjct: 244 RTSAYISQHDLHNWEMTVRETFDFSGRCQGVGTRYEMLEELSRREKEAGIKPDPEIDAFM 303
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
KA++V+GQ T+L TDYVLKILGLDICAD +VG+EMRRGISGGQ+KRVTTGEMLVG A L
Sbjct: 304 KAISVSGQRTNLFTDYVLKILGLDICADIIVGNEMRRGISGGQRKRVTTGEMLVGPAKGL 363
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424
+MDEISTGLDSSTTFQICKF+KQMVHI+DVTMI++LLQPAPET+DLFDD+ILLSEG++VY
Sbjct: 364 FMDEISTGLDSSTTFQICKFMKQMVHIMDVTMIISLLQPAPETFDLFDDVILLSEGEVVY 423
Query: 425 QGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGF 484
QGPR+NVLEFFE MGFKCPERKGVADFLQEVTSKKDQEQYWF+K+QPYRY+ V +F++GF
Sbjct: 424 QGPRENVLEFFEFMGFKCPERKGVADFLQEVTSKKDQEQYWFKKSQPYRYVSVPEFIQGF 483
Query: 485 KSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIF 544
K FH+GQ++ ++L VP+DK HPA+LV +KYG+S W+LFRA F+REWLLMKRNSF+YIF
Sbjct: 484 KKFHIGQRLNTELGVPFDKRSTHPAALVTQKYGLSNWQLFRALFSREWLLMKRNSFIYIF 543
Query: 545 KTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPI 604
KT Q+T MSLI MTV+FRTEM G + GG +Y GALFFSL+N+MFNG AE A+T+ RLP+
Sbjct: 544 KTVQITIMSLITMTVFFRTEMKPGTLEGGGKYLGALFFSLINMMFNGMAELALTITRLPV 603
Query: 605 FYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFS 664
FYKQRD LF+P WAF LPIW+LRIP+S+++S IW+ LTYYTIG+ PAASRFF+QFLA+F
Sbjct: 604 FYKQRDSLFFPGWAFGLPIWVLRIPLSLMESGIWIGLTYYTIGFAPAASRFFRQFLAYFG 663
Query: 665 IHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMM 724
IH M+L L+R +AA GR +VI++T+G+F LLI+ LGGF++AK DIEP++ WGYYISPMM
Sbjct: 664 IHQMALSLFRFIAAAGRVQVIASTMGSFTLLIVFVLGGFIIAKGDIEPWMIWGYYISPMM 723
Query: 725 YGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFL 784
YGQ ++++NEFL RW+ + +P + T+GKV+L R F T + YWI VGAL G+SFL
Sbjct: 724 YGQNAIVINEFLDDRWNKDSSNPLLRGTTVGKVILASRDFYTTNKMYWICVGALFGFSFL 783
Query: 785 FNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGL 824
FN LFI AL +LNP+GDS S + +E +K+ + G+
Sbjct: 784 FNILFIMALTFLNPLGDSRSAIADEANDKKNNPYSSSRGI 823
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 824 | ||||||
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.956 | 0.542 | 0.682 | 3.9e-305 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.949 | 0.537 | 0.680 | 2.8e-304 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.950 | 0.550 | 0.544 | 4.4e-242 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.933 | 0.523 | 0.563 | 4.6e-240 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.945 | 0.540 | 0.546 | 4.2e-237 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.939 | 0.546 | 0.543 | 1.1e-229 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.944 | 0.547 | 0.520 | 3.9e-227 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.921 | 0.532 | 0.500 | 1e-212 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.882 | 0.514 | 0.514 | 4.7e-206 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.876 | 0.497 | 0.509 | 2.5e-200 |
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2928 (1035.8 bits), Expect = 3.9e-305, P = 3.9e-305
Identities = 539/790 (68%), Positives = 659/790 (83%)
Query: 36 EVWNAP-DNVFSRSER-QDDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVS 93
+V+ P D+VF RS+R ++D+ ELRWAA+ERLPTYDRL+KGML Q + +GK+ +VDV+
Sbjct: 36 DVFAPPTDDVFGRSDRREEDDVELRWAALERLPTYDRLRKGMLPQTMVNGKIGLEDVDVT 95
Query: 94 NLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGT 153
NLA ++KK L+E ILK VEEDNEKFL+R+R RTDRVGIE+PKIEVRY++LSVEGDV +
Sbjct: 96 NLAPKEKKHLMEMILKFVEEDNEKFLRRLRERTDRVGIEVPKIEVRYENLSVEGDVRSAS 155
Query: 154 RALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTL 213
RALPTL NV LN +ES LGL HL+PSKKR + ILKD+SGI+KPSRMTLLLGPP +GKTTL
Sbjct: 156 RALPTLFNVTLNTIESILGLFHLLPSKKRKIEILKDISGIIKPSRMTLLLGPPSSGKTTL 215
Query: 214 MLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCL 273
+ ALAGKL L+ SG+ITYCGHE EFVPQ+TCAYISQHDLH GEMTVRE+LDFSGRCL
Sbjct: 216 LQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVRESLDFSGRCL 275
Query: 274 GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333
GVGTRY+LL ELSRRE++AGIKPDPEIDAFMK++A++GQETSLVTDYVLK+LGLDICADT
Sbjct: 276 GVGTRYQLLTELSRREREAGIKPDPEIDAFMKSIAISGQETSLVTDYVLKLLGLDICADT 335
Query: 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD 393
+VGD MRRGISGGQ+KR+TTGEMLVG A L+MDEISTGLDSSTTFQICKF++Q+VHI D
Sbjct: 336 LVGDVMRRGISGGQRKRLTTGEMLVGPATALFMDEISTGLDSSTTFQICKFMRQLVHIAD 395
Query: 394 VTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQ 453
VTM+++LLQPAPET++LFDDIILLSEGQIVYQG RDNVLEFFE+MGFKCPERKG+ADFLQ
Sbjct: 396 VTMVISLLQPAPETFELFDDIILLSEGQIVYQGSRDNVLEFFEYMGFKCPERKGIADFLQ 455
Query: 454 EVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVK 513
EVTSKKDQEQYW R+ PY Y+ V DF GF SFH GQQ+AS+ RVPYDK++ HPA+LV
Sbjct: 456 EVTSKKDQEQYWNRREHPYSYVSVHDFSSGFNSFHAGQQLASEFRVPYDKAKTHPAALVT 515
Query: 514 EKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGG 573
+KYGIS +LF+ACF REWLLMKRNSFVY+FKT Q+T MSLI MTVYFRTEM VG + G
Sbjct: 516 QKYGISNKDLFKACFDREWLLMKRNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDG 575
Query: 574 SRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISIL 633
+++GALFFSL+N+MFNG AE A TV+RLP+F+KQRD LFYP WAFALP +LL+IP+S++
Sbjct: 576 QKFYGALFFSLINLMFNGMAELAFTVMRLPVFFKQRDFLFYPPWAFALPGFLLKIPLSLI 635
Query: 634 DSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFI 693
+S IW+ALTYYTIG+ P+A+RFF+Q LA+F ++ M+L L+R + A+GRTEVI+N+ GT
Sbjct: 636 ESVIWIALTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGTLA 695
Query: 694 LLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPT 753
LL++ LGGF+++KDDI +L W YY SPMMYGQT+L++NEFL RW + N D IN T
Sbjct: 696 LLVVFVLGGFIISKDDIPSWLTWCYYTSPMMYGQTALVINEFLDERWGSPNNDTRINAKT 755
Query: 754 IGKVLLKIRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDGEK 813
+G+VLLK RGF TE W+WI +GAL G++ NP+G+S +T + E+G+
Sbjct: 756 VGEVLLKSRGFFTEPYWFWICIGALLGFTVLFNFCYIIALMYLNPLGNSKATTVVEEGKD 815
Query: 814 QRASGHEAEG 823
+ H G
Sbjct: 816 KHKGSHSGTG 825
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2920 (1033.0 bits), Expect = 2.8e-304, P = 2.8e-304
Identities = 533/783 (68%), Positives = 651/783 (83%)
Query: 42 DNVFSRSER-QDDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDK 100
D VF RSER ++D+ ELRWAAIERLPT+DRL+KGML Q +GK+ ++D++ L +DK
Sbjct: 45 DEVFGRSERREEDDMELRWAAIERLPTFDRLRKGMLPQTSANGKIELEDIDLTRLEPKDK 104
Query: 101 KRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLL 160
K L+E IL VEEDNEKFL+ +R RTDRVGIE+PKIEVRY+++SVEGDV +RALPTL
Sbjct: 105 KHLMEMILSFVEEDNEKFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRSASRALPTLF 164
Query: 161 NVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220
NV LN LES LG HL+PSK++ ++ILKD+SGIVKPSRMTLLLGPP +GKTTL+ ALAGK
Sbjct: 165 NVTLNTLESILGFFHLLPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKTTLLQALAGK 224
Query: 221 LGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE 280
L L+ SG+ITYCGHE EFVPQ+TCAYISQHDLH GEMTVRE LDFSGRCLGVG+RY+
Sbjct: 225 LDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGSRYQ 284
Query: 281 LLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340
L++ELSRREK+ GIKPDP+IDAFMK++A++GQETSLVTDYVLKILGLDICAD + GD MR
Sbjct: 285 LMSELSRREKEEGIKPDPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGDVMR 344
Query: 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400
RGISGGQKKR+TTGEMLVG A L+MDEISTGLDSSTTFQICKF++Q+VHI DVTMI++L
Sbjct: 345 RGISGGQKKRLTTGEMLVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMIISL 404
Query: 401 LQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKD 460
LQPAPET++LFDDIILLSEGQIVYQGPRDNVLEFFE+ GF+CPERKGVADFLQEVTSKKD
Sbjct: 405 LQPAPETFELFDDIILLSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTSKKD 464
Query: 461 QEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISK 520
QEQYW ++ QPY Y+ VSDF GF +FH GQ++ S+ RVPYDK++ H A+LV +KYGIS
Sbjct: 465 QEQYWNKREQPYNYVSVSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYGISN 524
Query: 521 WELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGAL 580
WELF+ACF REWLLMKRNSFVY+FKT Q+T MSLI MTVY RTEM VG + G +++GA+
Sbjct: 525 WELFKACFDREWLLMKRNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFYGAM 584
Query: 581 FFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVA 640
FFSL+N+MFNG AE A TV+RLP+FYKQRD LFYP WAFALP WLL+IP+S+++S IW+
Sbjct: 585 FFSLINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGIWIG 644
Query: 641 LTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSL 700
LTYYTIG+ P+A+RFF+Q LA+F ++ M+L L+R + A+GRTEVISN++GTF LLI+ +L
Sbjct: 645 LTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIVFTL 704
Query: 701 GGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLK 760
GGF++AKDDI P++ W YY+SPMMYGQT++++NEFL RW + N D IN T+G+VLLK
Sbjct: 705 GGFIIAKDDIRPWMTWAYYMSPMMYGQTAIVMNEFLDERWSSPNYDTRINAKTVGEVLLK 764
Query: 761 IRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDGEKQRASGHE 820
RGF TE W+WI + AL G+S NP+G+S +TV+EE +KQ+
Sbjct: 765 SRGFFTEPYWFWICIVALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGKDKQKGENRG 824
Query: 821 AEG 823
EG
Sbjct: 825 TEG 827
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2333 (826.3 bits), Expect = 4.4e-242, P = 4.4e-242
Identities = 431/792 (54%), Positives = 587/792 (74%)
Query: 37 VWNAPDN--VFSRSERQ-DDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVS 93
VW +FSRS R+ DDEE LRWAA+E+LPT+DRL+KG+L G + +E+D+
Sbjct: 19 VWKKDSGREIFSRSSREEDDEEALRWAALEKLPTFDRLRKGILTASHAGGPI--NEIDIQ 76
Query: 94 NLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGT 153
L QD K+LLE ++K+ ++++EK L +++ R DRVGI++P IEVR+DHL VE +VHVG
Sbjct: 77 KLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIEVRFDHLKVEAEVHVGG 136
Query: 154 RALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTL 213
RALPT +N N + L LHLVP++K+ IL DVSGIVKP RM LLLGPP +GKTTL
Sbjct: 137 RALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKTTL 196
Query: 214 MLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCL 273
+LALAGKL ++L+ +G++TY GH +NEFVPQRT AYI Q+D+H GEMTVRET ++ R
Sbjct: 197 LLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRETFAYAARFQ 256
Query: 274 GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333
GVG+RY++L EL+RREK+A IKPDP+ID FMKA++ AG++T+++TDY+LKILGL++CADT
Sbjct: 257 GVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCADT 316
Query: 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD 393
MVGD+M RGISGGQKKRVTTGEMLVG + L+MDEISTGLDSSTT+QI L+ VHI +
Sbjct: 317 MVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIFN 376
Query: 394 VTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQ 453
T +++LLQPAPET++LFDDIIL++EG+I+Y+GPRD+V+EFFE MGFKCP RKGVADFLQ
Sbjct: 377 GTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFLQ 436
Query: 454 EVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVK 513
EVTSKKDQ QYW R+++PYR+I V +F E F+SFH+G++I +L +P+DK+++HPA+L
Sbjct: 437 EVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALTT 496
Query: 514 EKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGG 573
+KYG+ EL + F+RE+LLMKRNSFVY FK QL M+ + MT++FRTEM G
Sbjct: 497 KKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVDG 556
Query: 574 SRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISIL 633
S Y GALFF L+ +MFNG +E +MT+ +LP+FYKQRD LFYP+W ++LP WLL+IPIS +
Sbjct: 557 SLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISFM 616
Query: 634 DSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFI 693
++ + +TYY IG+DP R FKQ++ ++ M+ L+++VAA+GR +++NT G F
Sbjct: 617 EAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAFA 676
Query: 694 LLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPT 753
+L+ +LGG V+++DDI+ + WGY+ISP+MYGQ ++L NEF G W ++ S T
Sbjct: 677 MLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSS---ET 733
Query: 754 IGKVLLKIRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDG-E 812
+G LK RGF + WYWIG GAL G+ N +G + + EE +
Sbjct: 734 LGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASD 793
Query: 813 KQRASGHEAEGL 824
+ +EG+
Sbjct: 794 ETELQSARSEGV 805
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| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2314 (819.6 bits), Expect = 4.6e-240, P = 4.6e-240
Identities = 440/781 (56%), Positives = 578/781 (74%)
Query: 42 DNVFSRSERQ-----DDEEELRWAAIERLPTYDRLKKGMLNQVLED----GKVVKHEVDV 92
+++FS R+ DDEE L+WAAIE+LPTY RL+ ++N V+ED +++ EVDV
Sbjct: 33 EDIFSSGSRRTQSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVEDDVYGNQLMSKEVDV 92
Query: 93 SNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVG 152
+ L +D+++ ++ + K+ E+DNE+ L ++R+R DRVGI++P +EVRY+HL+++ D + G
Sbjct: 93 TKLDGEDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVRYEHLTIKADCYTG 152
Query: 153 TRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT 212
R+LPTLLNV NM ESALG++ + +KK + ILKD+SG++KP RMTLLLGPP +GKTT
Sbjct: 153 NRSLPTLLNVVRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRMTLLLGPPSSGKTT 212
Query: 213 LMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272
L+LALAGKL K L+ SG ITY G++L+EFVP++T AYISQ+DLH G MTV+ETLDFS RC
Sbjct: 213 LLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGIMTVKETLDFSARC 272
Query: 273 LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332
GVGTRY+LL EL+RREK AGI P+ ++D FMKA A G + SLVTDY LKILGLDIC D
Sbjct: 273 QGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYTLKILGLDICKD 332
Query: 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL 392
T+VGD+M RGISGGQKKRVTTGEM+VG L+MDEISTGLDSSTTFQI K L+Q+VH+
Sbjct: 333 TIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLN 392
Query: 393 DVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+ T++++LLQPAPET+DLFDDIIL+SEGQIVYQGPRDN+LEFFE GFKCPERKG ADFL
Sbjct: 393 EATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERKGTADFL 452
Query: 453 QEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLV 512
QEVTSKKDQEQYW N+PY YIPVS+F +KSFH+G +++++L VP+DKS+ H A+LV
Sbjct: 453 QEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRGHKAALV 512
Query: 513 KEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNG 572
+KY +SK EL ++C+ +EWLLM+RN+F Y+FKT Q+ ++ I T++ RTEM+ +
Sbjct: 513 FDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMNTRNEGD 572
Query: 573 GSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISI 632
+ Y GAL F ++ MFNGFAE AM V RLP+FYKQRD LFYPSW F+LP +LL IP SI
Sbjct: 573 ANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSI 632
Query: 633 LDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTF 692
L+ST W+ +TYY+IG+ P ASRFFKQFL F I M+ L+RL+A+V RT +I+NT G
Sbjct: 633 LESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIANTGGAL 692
Query: 693 ILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQP 752
LL++ LGGF++ K I + W Y++SP+ Y L+VNE RW NK S N
Sbjct: 693 TLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRW--MNKMASSNST 750
Query: 753 T-IGKVLLKIRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDG 811
+G ++L + NWYWI VGAL ++ NP+G + EE+
Sbjct: 751 IKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKAGLLPEEEN 810
Query: 812 E 812
E
Sbjct: 811 E 811
|
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| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2286 (809.8 bits), Expect = 4.2e-237, P = 4.2e-237
Identities = 432/791 (54%), Positives = 579/791 (73%)
Query: 42 DNVFSRSERQ-----DDEEELRWAAIERLPTYDRLKKGMLNQVLED----GKVVKHEVDV 92
+++F+ S R+ +DEE L+WA+IE+LPTY+RL+ ++ ++ ED +++ VDV
Sbjct: 31 EDIFNTSSRRTKSVNEDEEALKWASIEKLPTYNRLRTSLMPELGEDDVYGNQILNKAVDV 90
Query: 93 SNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVG 152
+ L +++++ ++ + K+ E+DNE+ L ++R+R DRVGI++P +EVRYDHL+V+ D + G
Sbjct: 91 TKLDGEERQKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVEVRYDHLTVKADCYTG 150
Query: 153 TRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT 212
R+LP+LLN NM E+ALG++ + +KK + ILKDVSGIVKPSRMTLLLGPP +GKTT
Sbjct: 151 DRSLPSLLNAVRNMGEAALGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGKTT 210
Query: 213 LMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272
L+LALAGKL K L SG++TY G+ LNEFVP +T AYISQ+DLH G MTV+ETLDFS RC
Sbjct: 211 LLLALAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSARC 270
Query: 273 LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332
GVGTRY+LL EL+RREK AGI P+ ++D FMKA A G ++SL+TDY LKILGLDIC D
Sbjct: 271 QGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKD 330
Query: 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL 392
T+VGD+M RGISGGQKKRVTTGEM+VG L+MDEISTGLDSSTTFQI K L+Q+VH+
Sbjct: 331 TIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLT 390
Query: 393 DVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+ T++++LLQPAPET+DLFDDIILLSEGQIVYQGPRD++LEFFE GFKCPERKG ADFL
Sbjct: 391 EATVLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFL 450
Query: 453 QEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLV 512
QEVTSKKDQEQYW N+PYRYIPVS+F FK FH+G +++++L VPYDKS++H A+L+
Sbjct: 451 QEVTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALM 510
Query: 513 KEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNG 572
+KY I K EL ++C+ +EW+LMKRNSF Y+FKT Q+ ++ I T+Y RTEM +
Sbjct: 511 FDKYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEID 570
Query: 573 GSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISI 632
+ Y G+L F+++ MFNG AE AMT+ RLP+FYKQRD LF+P W + LP +LL IPISI
Sbjct: 571 ANIYVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISI 630
Query: 633 LDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTF 692
+ST W+ +TYY+IGY P A RFFKQFL F I M+ ++R +A+ RT I+NT G
Sbjct: 631 FESTAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVL 690
Query: 693 ILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQP 752
+LL++ GGF++ + +I + RW Y+ISP+ Y ++ VNE RW NK +
Sbjct: 691 VLLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAPRW--MNKMSGNSTT 748
Query: 753 TIGKVLLKIRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVI-EEDG 811
+G +L I + NWYWIGVG L G++ +P+G + + + EED
Sbjct: 749 RLGTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILPKEEDE 808
Query: 812 EKQRASGHEAE 822
E + +G E
Sbjct: 809 EAKGKAGSNKE 819
|
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| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2216 (785.1 bits), Expect = 1.1e-229, P = 1.1e-229
Identities = 428/788 (54%), Positives = 571/788 (72%)
Query: 42 DNVFSR---SERQD-DEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAV 97
+N FSR S D DEE L+WAA+E+LPT+ RL+ +++ ED VDV+ L V
Sbjct: 21 NNHFSRRSGSTIDDHDEEALKWAALEKLPTFARLRTTIIHPH-ED------LVDVTKLGV 73
Query: 98 QDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALP 157
D+++ ++SI K+ EEDNEKFLK+ R+R DRV I++P +EVR++ +++E + H+G RALP
Sbjct: 74 DDRQKFIDSIFKVTEEDNEKFLKKFRNRIDRVRIKLPTVEVRFEKVTIEANCHIGKRALP 133
Query: 158 TLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLAL 217
TL N ALN+ E L LL +K V IL+DVSGI+KPSRMTLLLGPP +GKTTL+LAL
Sbjct: 134 TLPNAALNIAERGLRLLGFNFTKTTKVTILRDVSGIIKPSRMTLLLGPPSSGKTTLLLAL 193
Query: 218 AGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGT 277
AGKL + L+ +G++TY GH L EFVPQ+T AYISQ+D+H G MTV+ETLDFS RC GVGT
Sbjct: 194 AGKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVGVMTVQETLDFSARCQGVGT 253
Query: 278 RYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337
RY+LL+EL RREK AGI P+PE+D FMK++A ++SL+TDY L+ILGLDIC DT+VGD
Sbjct: 254 RYDLLSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLITDYTLRILGLDICKDTVVGD 313
Query: 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397
EM RGISGGQKKRVTTGEM+VG L+MDEISTGLDSSTT+QI K L+++V D T++
Sbjct: 314 EMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQEIVRFTDATVL 373
Query: 398 VALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTS 457
++LLQPAPET++LFDDIILLSEGQIVYQGPRD+VL FFE GFKCP+RKG ADFLQEVTS
Sbjct: 374 MSLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFETCGFKCPDRKGTADFLQEVTS 433
Query: 458 KKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYG 517
+KDQEQYW +PY YI VS+F + F++FH+G + DL VPYD+ ++HPASLV +K+
Sbjct: 434 RKDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLSVPYDRFKSHPASLVFKKHS 493
Query: 518 ISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYF 577
+ K +LF+ C+ RE LLMKRN+F YI KT Q+ M+LI TVY RTEM + + G+ Y
Sbjct: 494 VPKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIASTVYLRTEMGTKNESDGAVYI 553
Query: 578 GALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTI 637
GAL FS++ MFNGFAE A+ + RLP+FYKQRD LF+P W F+LP +LL IPISI +S +
Sbjct: 554 GALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFSLPTFLLGIPISIFESVV 613
Query: 638 WVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIM 697
WV +TYY IG+ P SRF K L F M+ ++R +AA R+ +++NT G ++L++
Sbjct: 614 WVTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIAATCRSMILANTGGALVILLL 673
Query: 698 MSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKV 757
LGGF++ + +I + +W Y++SPM Y +L VNE L RW N+ S N ++G
Sbjct: 674 FLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLAPRWI--NQPSSDNSTSLGLA 731
Query: 758 LLKIRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDGEKQRA- 816
+L+I T+ NWYWIGVG + G++ NP+ + V +E+ E+ RA
Sbjct: 732 VLEIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPLEKQQAVVSKENTEENRAE 791
Query: 817 SGHEAEGL 824
+G +++ +
Sbjct: 792 NGSKSKSI 799
|
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| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2192 (776.7 bits), Expect = 3.9e-227, P = 3.9e-227
Identities = 411/790 (52%), Positives = 564/790 (71%)
Query: 37 VWNAPDNVFSRS----ERQDDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDV 92
+WN+ +N FSRS + +DEEELRWAA++RLPTY R+++G+ ++ + K E+ +
Sbjct: 1 MWNSAENAFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPK----EIQI 56
Query: 93 SNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVG 152
NL +++ LL+ ++ VE D E+F R+R R D V ++ PKIEVR+ +L VE VHVG
Sbjct: 57 GNLEASEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVG 116
Query: 153 TRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT 212
+RALPT+ N +NM E L +H++ K+ + IL +SG+++PSR+TLLLGPP +GKTT
Sbjct: 117 SRALPTIPNFIINMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTT 176
Query: 213 LMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272
L+LALAG+LG +L+ SGKITY G++L E + RT AY+SQ D H EMTVR+TL+F+GRC
Sbjct: 177 LLLALAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRC 236
Query: 273 LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332
GVG +Y++L EL+RREK AGI PD ++D FMK++A+ G ETSLV +YV+KILGLD CAD
Sbjct: 237 QGVGFKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCAD 296
Query: 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL 392
T+VGDEM +GISGGQKKR+TTGE+LVG A VL+MDEIS GLDSSTT QI +++ H L
Sbjct: 297 TLVGDEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHAL 356
Query: 393 DVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+ T +++LLQP+PETY+LFDD+IL+SEGQI+YQGPRD VL+FF +GF CP+RK VADFL
Sbjct: 357 EGTTVISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFL 416
Query: 453 QEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLV 512
QEVTSKKDQ+QYW +PYRY+P F E F+S+ G+++A L VP+DK H A+L
Sbjct: 417 QEVTSKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALS 476
Query: 513 KEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNG 572
+YG+ K EL + FA + LMK+N+F+Y+FK QL ++LI MTV+ RT M ++
Sbjct: 477 TSQYGVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDD 536
Query: 573 GSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISI 632
G+ Y G+L+FS++ I+FNGF E M V +LP+ YK RD FYPSWA+ LP WLL IP SI
Sbjct: 537 GNIYLGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSI 596
Query: 633 LDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTF 692
++S WVA+TYYTIGYDP SRF +QFL +FS+H MSL L+R++ ++GR +++NT G+F
Sbjct: 597 IESATWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSF 656
Query: 693 ILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQP 752
+L++M+LGGF++++D I + WGY+ISP+MY Q + VNEFLG W Q +
Sbjct: 657 AMLVVMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNW--QKTAGNHTSD 714
Query: 753 TIGKVLLKIRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEE--D 810
++G LLK R + + WYWIGV AL GY+ NP G + V E D
Sbjct: 715 SLGLALLKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELD 774
Query: 811 GEKQRASGHE 820
+++ G E
Sbjct: 775 EREKKRKGDE 784
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| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2056 (728.8 bits), Expect = 1.0e-212, P = 1.0e-212
Identities = 387/773 (50%), Positives = 539/773 (69%)
Query: 51 QDDEEELRWAAIERLP-----TYDRLKKGMLNQV----LEDGKVVKHEVDVSNLAVQDKK 101
+ DEE+LRWAAI RLP T++ + + Q DG VV+ +DV L D++
Sbjct: 32 EQDEEDLRWAAIGRLPSQRQGTHNAILRRSQTQTQTSGYADGNVVQ-TIDVKKLDRADRE 90
Query: 102 RLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLN 161
L+ L ++DN K L I+ R DRVG+E+PKIEVR+++L++E DV GTRALPTL+N
Sbjct: 91 MLVRQALATSDQDNFKLLSAIKERLDRVGMEVPKIEVRFENLNIEADVQAGTRALPTLVN 150
Query: 162 VALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221
V+ + E L L ++ +K + ILKD+SGI+KP RMTLLLGPPG+GK+TL+LALAGKL
Sbjct: 151 VSRDFFERCLSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKSTLLLALAGKL 210
Query: 222 GKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE- 280
K L+ +G ITY G LN+F +RT AYISQ D H E+TVRETLDF+ RC G +
Sbjct: 211 DKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAARCQGASEGFAG 270
Query: 281 LLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340
+ +L+R EK+ GI+P EIDAFMKA +V G++ S+ TDYVLK+LGLD+C+DTMVG++M
Sbjct: 271 YMKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVCSDTMVGNDMM 330
Query: 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400
RG+SGGQ+KRVTTGEM VG L+MDEISTGLDSSTTFQI K ++ VH++D T+++AL
Sbjct: 331 RGVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSSTTFQIVKCIRNFVHLMDATVLMAL 390
Query: 401 LQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKD 460
LQPAPET+DLFDD+ILLSEG +VYQGPR++V+ FFE +GF+ P RKGVADFLQEVTSKKD
Sbjct: 391 LQPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFESLGFRLPPRKGVADFLQEVTSKKD 450
Query: 461 QEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISK 520
Q QYW ++PY++IPVSD F++ G S L P+DK A P++L + K+ IS
Sbjct: 451 QAQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKLAAPFDKKSADPSALCRTKFAISG 510
Query: 521 WELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGAL 580
WE + CF RE LL+KR+ F+Y F+T Q+ F+ L+ TV+ +T + G+ Y L
Sbjct: 511 WENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTATVFLKTRLHPTSEQFGNEYLSCL 570
Query: 581 FFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVA 640
FF L+++MFNGF+E + + RLP+FYKQRD+ F+P+W++++ WLLR+P S+L++ +W
Sbjct: 571 FFGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAWSWSIASWLLRVPYSVLEAVVWSG 630
Query: 641 LTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSL 700
+ Y+T+G P+A RFF+ L FS+H M+L L+R++A++ R VI+NT G+ +LI+ L
Sbjct: 631 VVYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMASLARDMVIANTFGSAAILIVFLL 690
Query: 701 GGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLK 760
GGFV+ K DI+P+ WG+++SP+ YGQ ++ VNEF RW + +I+ TIG LLK
Sbjct: 691 GGFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTATRWMTPS---AISDTTIGLNLLK 747
Query: 761 IRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDGEK 813
+R F T WYWIG+ L GY+ NP+ + + V+++ E+
Sbjct: 748 LRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLRKARAVVLDDPNEE 800
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1993 (706.6 bits), Expect = 4.7e-206, P = 4.7e-206
Identities = 382/742 (51%), Positives = 524/742 (70%)
Query: 46 SRSERQD--DEEE--LRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKK 101
SR+E +D DE E L+WA I+RLPT+ RL+ ++++ E + K VDV+ L ++
Sbjct: 10 SRNEHEDGGDEAEHALQWAEIQRLPTFKRLRSSLVDKYGEGTEKGKKVVDVTKLGAMERH 69
Query: 102 RLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGT-RALPTLL 160
++E ++K +E DN K LK+IR R +RVG+E P IEVRY+HL VE V +ALPTL
Sbjct: 70 LMIEKLIKHIENDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKALPTLW 129
Query: 161 NVALNMLESALGLLHL--VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALA 218
N ++ L LL L V + + +++IL DVSGI+ P R+TLLLGPPG GKTTL+ AL+
Sbjct: 130 NSLKHVF---LDLLKLSGVRTNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKALS 186
Query: 219 GKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 278
G L +L+ G+I+Y GH LNE VPQ+T AYISQHDLH EMT RET+DFS RC GVG+R
Sbjct: 187 GNLENNLKCYGEISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVGSR 246
Query: 279 YELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338
+++ E+S+REK GI PDPEIDA+MKA++V G + SL TDY+LKILGLDICA+T+VG+
Sbjct: 247 TDIMMEVSKREKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVGNA 306
Query: 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV 398
M+RGISGGQKKR+TT EM+VG L+MDEI+ GLDSST FQI K L+Q+ HI + T+ V
Sbjct: 307 MKRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATVFV 366
Query: 399 ALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSK 458
+LLQPAPE+YDLFDDI+L++EG+IVY GPRD+VL+FFE GF+CPERKGVADFLQEV SK
Sbjct: 367 SLLQPAPESYDLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVISK 426
Query: 459 KDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGI 518
KDQ QYW +N P+ ++ V + FK +G++I L PYD S+ H +L Y +
Sbjct: 427 KDQGQYWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVYSL 486
Query: 519 SKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFG 578
KWELFRAC +RE+LLMKRN FVY+FKTFQL ++I MTV+ RT M + ++G S Y
Sbjct: 487 PKWELFRACISREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDIDIIHGNS-YMS 545
Query: 579 ALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIW 638
LFF+ + ++ +G E +MTV RL +FYKQ+ FYP+WA+A+P +L+IP+S +S +W
Sbjct: 546 CLFFATVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESLVW 605
Query: 639 VALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMM 698
LTYY IGY P RFF+QF+ F++H S+ ++R +AA+ +T V + T G+F++LI
Sbjct: 606 TCLTYYVIGYTPEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLITF 665
Query: 699 SLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVL 758
GF + D+ +L+WG++++P+ Y + L VNEFL RW Q P+ T+G+ +
Sbjct: 666 VFAGFAIPYTDMPGWLKWGFWVNPISYAEIGLSVNEFLAPRW--QKMQPT--NVTLGRTI 721
Query: 759 LKIRGFSTESNWYWIGVGALTG 780
L+ RG + + YW+ + AL G
Sbjct: 722 LESRGLNYDDYMYWVSLSALLG 743
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1939 (687.6 bits), Expect = 2.5e-200, P = 2.5e-200
Identities = 375/736 (50%), Positives = 513/736 (69%)
Query: 52 DDEEELRWAAIERLPTYDRLKKGMLNQ----VLEDGKVVKHEVDVSNLAVQDKKRLLESI 107
D E L+WA IERLPT R++ +L+ + E G+ V VDV+ L ++ ++E +
Sbjct: 54 DAEYALQWAEIERLPTVKRMRSTLLDDGDESMTEKGRRV---VDVTKLGAVERHLMIEKL 110
Query: 108 LKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGT-RALPTLLNVALNM 166
+K +E DN K LK+IR R DRVG+E+P IEVRY+ L V + V +ALPTL N A +
Sbjct: 111 IKHIENDNLKLLKKIRRRIDRVGMELPTIEVRYESLKVVAECEVVEGKALPTLWNTAKRV 170
Query: 167 LESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR 226
L S L L + + + I+ DV+GI+KP R+TLLLGPP GKTTL+ AL+G L +L+
Sbjct: 171 L-SELVKLTGAKTHEAKINIINDVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLENNLK 229
Query: 227 ASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELS 286
SG+I+Y GH L+EFVPQ+T AYISQ+DLH EMTVRET+DFS RC GVG+R +++ E+S
Sbjct: 230 CSGEISYNGHRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEVS 289
Query: 287 RREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346
+REK+ GI PD E+DA+MKA++V G + SL TDY+LKILGLDICA+ ++GD MRRGISGG
Sbjct: 290 KREKEKGIIPDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEILIGDVMRRGISGG 349
Query: 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406
QKKR+TT EM+VG L+MDEI+ GLDSST FQI K L+Q HI T++V+LLQPAPE
Sbjct: 350 QKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPAPE 409
Query: 407 TYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWF 466
+YDLFDDI+L+++G+IVY GPR VL FFE GF+CPERKGVADFLQEV SKKDQ QYW+
Sbjct: 410 SYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYWW 469
Query: 467 RKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRA 526
++ PY ++ V + FK +G++I L PYD+S++H +L Y + WELF A
Sbjct: 470 HEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWELFIA 529
Query: 527 CFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLN 586
C +RE+LLMKRN FVYIFKT QL + I MTV+ RT M + ++G S Y ALFF+L+
Sbjct: 530 CISREYLLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDIIHGNS-YMSALFFALII 588
Query: 587 IMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTI 646
++ +GF E +MT RL +FYKQ+ FYP+WA+A+P +L++P+S +S +W L+YY I
Sbjct: 589 LLVDGFPELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYYVI 648
Query: 647 GYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMA 706
GY P ASRFFKQF+ F++H S+ ++R +AA+ +T V S T G+F +L GFV+
Sbjct: 649 GYTPEASRFFKQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIP 708
Query: 707 KDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFST 766
+ +L+WG++ +P+ YG+ L VNEFL RW+ P N T+G+ +L+ RG
Sbjct: 709 PPSMPAWLKWGFWANPLSYGEIGLSVNEFLAPRWNQMQ--P--NNFTLGRTILQTRGMDY 764
Query: 767 ESNWYWIGVGALTGYS 782
YW+ + AL G++
Sbjct: 765 NGYMYWVSLCALLGFT 780
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 824 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-72 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-45 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-42 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-41 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 6e-39 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-37 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 7e-36 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-32 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-32 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-25 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 2e-23 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-20 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-19 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 6e-19 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 9e-19 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 9e-19 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-17 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 6e-17 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-15 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 6e-15 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 8e-15 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-14 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-14 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-14 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-14 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-14 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-14 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 4e-14 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 5e-14 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-13 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-13 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-13 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-12 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-12 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-12 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-12 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-12 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-12 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 6e-12 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 6e-12 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 6e-12 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 6e-12 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 7e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-11 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-11 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-11 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 7e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-11 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 7e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 8e-11 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 8e-11 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 9e-11 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-10 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-10 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 6e-10 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 7e-10 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 8e-10 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 8e-10 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 8e-10 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-09 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-09 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-09 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-09 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-09 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-09 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-09 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-09 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-09 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 7e-09 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 8e-09 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 8e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 9e-09 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 9e-09 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-08 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-08 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-08 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-08 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-08 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-08 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-08 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-08 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 4e-08 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-08 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 5e-08 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 7e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 8e-08 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-07 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-07 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-07 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-07 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-07 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-07 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 4e-07 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-07 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-07 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 5e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 6e-07 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 6e-07 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 7e-07 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 7e-07 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 7e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 8e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 9e-07 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-06 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-06 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-06 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-06 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-06 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-06 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-06 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-06 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-05 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-05 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-05 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-05 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-05 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 3e-05 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-05 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-05 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-05 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-05 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 5e-05 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 5e-05 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 5e-05 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 6e-05 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 6e-05 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 8e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 8e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 8e-05 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 9e-05 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-04 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-04 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-04 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-04 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-04 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-04 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-04 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-04 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-04 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-04 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-04 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 3e-04 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-04 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-04 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 4e-04 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-04 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-04 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 4e-04 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 5e-04 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 5e-04 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 5e-04 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 5e-04 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 5e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 5e-04 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 6e-04 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 6e-04 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 7e-04 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 7e-04 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 7e-04 | |
| COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttra | 7e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 9e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 0.001 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 0.001 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 0.001 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 0.001 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 0.001 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 0.002 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.002 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 0.002 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.002 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 0.002 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 0.002 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 0.002 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 0.002 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 0.003 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 0.003 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.003 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 0.003 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 0.003 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 0.004 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 0.004 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 0.004 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1105 bits (2859), Expect = 0.0
Identities = 470/810 (58%), Positives = 604/810 (74%), Gaps = 15/810 (1%)
Query: 20 SISSGSRRSWASASIREVWNAPDNVFS---RSERQ-----DDEEELRWAAIERLPTYDRL 71
S RRS + + R N D VFS +S R+ +DEE L+WAAIE+LPTY RL
Sbjct: 3 SRGGSMRRSISRSVSRSSRNMED-VFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRL 61
Query: 72 KKGMLNQVLED---GKVVKH-EVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTD 127
+ ++ +E+ G + H EVDV+ L D+++ ++ + K+ EEDNEKFLK+ R+R D
Sbjct: 62 RTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRID 121
Query: 128 RVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRIL 187
RVGI++P +EVR++HL+VE D ++G+RALPTL N A N+ ESALG+L + +KK + IL
Sbjct: 122 RVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTIL 181
Query: 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTC 247
KD SGI+KPSRMTLLLGPP +GKTTL+LALAGKL L+ SG+ITY G+ LNEFVP++T
Sbjct: 182 KDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTS 241
Query: 248 AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAV 307
AYISQ+D+H G MTV+ETLDFS RC GVGTRY+LL+EL+RREK AGI P+ E+D FMKA
Sbjct: 242 AYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKAT 301
Query: 308 AVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMD 367
A+ G ++SL+TDY LKILGLDIC DT+VGDEM RGISGGQKKRVTTGEM+VG L+MD
Sbjct: 302 AMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMD 361
Query: 368 EISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGP 427
EISTGLDSSTT+QI K L+Q+VH+ + T++++LLQPAPET+DLFDDIILLSEGQIVYQGP
Sbjct: 362 EISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGP 421
Query: 428 RDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSF 487
RD++LEFFE GFKCPERKG ADFLQEVTSKKDQEQYW +N+PYRYI VS+F E FKSF
Sbjct: 422 RDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSF 481
Query: 488 HMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTF 547
H+G Q+ ++L VP+DKSQ+H A+LV KY + K EL +AC+ +EWLLMKRN+FVY+FKT
Sbjct: 482 HVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTV 541
Query: 548 QLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYK 607
Q+ ++ I TV+ RTEM + G+ Y GAL FS++ MFNGFAE A+ + RLP+FYK
Sbjct: 542 QIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYK 601
Query: 608 QRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHN 667
QRD LF+P W F LP +LL IPISI++S +WV +TYY+IG+ P ASRFFKQ L F I
Sbjct: 602 QRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQ 661
Query: 668 MSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQ 727
M+ ++RL+A+V RT +I+NT G +LL++ LGGF++ K +I + W Y++SP+ YG
Sbjct: 662 MAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGF 721
Query: 728 TSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNF 787
+L VNE RW NK S N +G +L I T+ NWYWIGVGAL G++ LFN
Sbjct: 722 NALAVNEMFAPRW--MNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNV 779
Query: 788 LFIAALAYLNPIGDSNSTVIEEDGEKQRAS 817
LF AL YLNP+G + + EE E+
Sbjct: 780 LFTLALTYLNPLGKKQAIISEETAEEMEGE 809
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 605 bits (1562), Expect = 0.0
Identities = 202/748 (27%), Positives = 327/748 (43%), Gaps = 79/748 (10%)
Query: 112 EEDNEKFLKRIRHRTDRVGIEIP--KIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLES 169
E + + ++K R D I K+ V Y +LS G V + PT N L +L
Sbjct: 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTR 60
Query: 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL-GKDLRAS 228
L ++ ILK + G++KP +T++LG PG+G +TL+ +A G +
Sbjct: 61 GFRKLKK-FRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVE 119
Query: 229 GKITYCGHELNEFVPQRT--CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELS 286
G ITY G E Y ++ D+H +TV ETLDF+ RC R + ++
Sbjct: 120 GVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREE 179
Query: 287 RREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346
+ + D + GL +T VG++ RG+SGG
Sbjct: 180 YAKH--------------------------IADVYMATYGLSHTRNTKVGNDFVRGVSGG 213
Query: 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406
++KRV+ E +G A + D + GLDS+T + + LK +ILD T +VA+ Q + +
Sbjct: 214 ERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQD 273
Query: 407 TYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYW- 465
Y+LFD +I+L EG +Y GP D ++FE MGFKCP+R+ ADFL +TS + Q
Sbjct: 274 AYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ERQIKP 332
Query: 466 -FRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDK----------SQAHPA----- 509
+ K P +F +++ Q+ ++ D+ ++H A
Sbjct: 333 GYEKKVP---RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKR 389
Query: 510 SLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGD 569
+ Y +S + C AR +L MK N +F F M+LI +V++ + D
Sbjct: 390 TRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSD 449
Query: 570 MNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIP 629
GALFF++L F+ E A PI K R + Y A A+ + IP
Sbjct: 450 ---FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIP 506
Query: 630 ISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTL 689
I++S ++ + Y+ + + A RFF L F L+R + AV +T + T
Sbjct: 507 FKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTP 566
Query: 690 GTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPS- 748
+LL + GF + + + + +W YY++P+ Y SL+VNEF G R++ PS
Sbjct: 567 AAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSG 626
Query: 749 INQPTIG----------------KVL----LKIRGFSTESNWYWIGVGALTGYSFLFNFL 788
+G V LK+ F ++ W G + G++ F F+
Sbjct: 627 GGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFV 685
Query: 789 FIAALAYLNPIGDSNSTVIEEDGEKQRA 816
+I + ++ G +RA
Sbjct: 686 YILLTEFNKGAKQKGEILVFRRGSLKRA 713
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 249 bits (637), Expect = 2e-72
Identities = 161/619 (26%), Positives = 281/619 (45%), Gaps = 58/619 (9%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+LK+VSG+ KP + ++G GAGKTTLM ALA + K ++ SG + G ++ +
Sbjct: 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMR 98
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
AY+ Q DL +TVRE L F + ++++EK+ +
Sbjct: 99 AISAYVQQDDLFIPTLTVREHLMFQ-------AHLRMPRRVTKKEKRERV---------- 141
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR-RGISGGQKKRVTTGEMLVGTANV 363
D VL+ LGL CA+T +G R +G+SGG++KR+ L+ +
Sbjct: 142 --------------DEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPL 187
Query: 364 LYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423
L+ DE ++GLDS + + + LK + T+I + QP+ E ++LFD IIL++EG++
Sbjct: 188 LFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVA 246
Query: 424 YQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEG 483
Y G D + FF +G CPE ADF +V + +N+ I +
Sbjct: 247 YLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPG-----SENESRERI--EKICDS 299
Query: 484 FKSFHMGQQIASDLRVPYDKSQ---AHPASLVKEKYGISKWELFRACFAREWLLMKRNSF 540
F +G+ + + + K+ ++ Y S W F A R WL + R+
Sbjct: 300 FAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPL 359
Query: 541 VYIFKTFQLTFMSLICMTVYFRTEMS-VGDMNGGSRYFGALFFSLLNIMF-NGFAENAMT 598
+ + Q +++ +Y ++ G N GALF L N+ F N F +
Sbjct: 360 LLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNIN----GALFLFLTNMTFQNVFP--VIN 413
Query: 599 V--LRLPIFYKQ-RDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRF 655
V LP+F ++ R L+ S A+ L + +P+ I+ ++ ++TY+ IG A+ F
Sbjct: 414 VFTAELPVFLRETRSGLYRVS-AYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472
Query: 656 FKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLR 715
+ N++ L++ + ++ T+G ++ + GGF + D I + +
Sbjct: 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFK 532
Query: 716 WGYYISPMMYGQTSLLVNEFLG-GRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIG 774
W Y+S YG LL+N++ + + + + P+ G+V+L+ F ++
Sbjct: 533 WLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNAD--LYLD 590
Query: 775 VGALTGYSFLFNFLFIAAL 793
+ L F F L AL
Sbjct: 591 LIGLVILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 2e-45
Identities = 57/216 (26%), Positives = 105/216 (48%), Gaps = 8/216 (3%)
Query: 522 ELFRACFAREWLLMKRNSFV-YIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGAL 580
+A RE+L R+ + +++ Q M+L+ TV+ + S+G +N G L
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGLN----RPGLL 56
Query: 581 FFSLLNIMFNGFAENAMTVLR-LPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWV 639
FFS+L F+ + +R + ++ Y A+ L L+ +PIS+L + I++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 640 ALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMS 699
+ Y+ +G SRFF L + L +AA+ + ++ +G +LL ++
Sbjct: 117 LIVYFMVGLPV--SRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 700 LGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEF 735
L GF + D + +L+W YY++P+ Y +L NEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 3e-42
Identities = 151/590 (25%), Positives = 247/590 (41%), Gaps = 99/590 (16%)
Query: 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236
V KK IL +V G VKP +T L+G GAGKTTL+ LA ++ + G G
Sbjct: 769 VKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGR 828
Query: 237 ELNE-FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIK 295
L+ F QR+ Y+ Q DLH TVRE+L FS +S+ EK
Sbjct: 829 PLDSSF--QRSIGYVQQQDLHLPTSTVRESLRFSA-------YLRQPKSVSKSEK----- 874
Query: 296 PDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGE 355
M+ V + V+K+L ++ AD +VG G++ Q+KR+T G
Sbjct: 875 --------MEYV-----------EEVIKLLEMESYADAVVG-VPGEGLNVEQRKRLTIGV 914
Query: 356 MLVGT-ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414
LV +L++DE ++GLDS T + ICK ++++ ++ + QP+ ++ FD +
Sbjct: 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH-GQAILCTIHQPSAILFEEFDRL 973
Query: 415 ILLSEG-QIVYQGP----RDNVLEFFE-HMGFKCPERKGVADFLQEV-----TSKKDQEQ 463
+LL +G Q VY G ++ +FE H KCPE A+++ EV + +Q
Sbjct: 974 LLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQ-- 1031
Query: 464 YWFRKNQPYRYIPVSDFVEGFKSFHMGQQIAS---DLRVPYDKSQAHPASLVKEKYGISK 520
D+ E +++ Q + + L K++ KY S
Sbjct: 1032 ---------------DYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASL 1076
Query: 521 WELFRACFAREWLLMKRNSFVYIFKTFQLT-FMSLICMTVYFRTEMSVGDMNGGSRYFGA 579
W F+ R + R + Y++ F LT F +L +F+ S + G A
Sbjct: 1077 WYQFKLVLWRTFQQYWR-TPDYLYSKFFLTIFAALFIGFTFFKVGTS---LQGLQNQMFA 1132
Query: 580 LFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYP-------SW-AFALPIWLLRIPIS 631
+F + ++FN + LP F QRD SW AF + IP +
Sbjct: 1133 VFMAT--VLFNPLIQQY-----LPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYN 1185
Query: 632 ILDSTIWVALTYYTIGYDPAASR---------FFKQFLAFFSIHNMSLPLYRLVAAVGRT 682
++ TI+ + YY +G+ AS+ F F ++ +L +V +
Sbjct: 1186 LVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQ--MVISFNPN 1243
Query: 683 EVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLV 732
+ L + + + +S G + + F + Y SP Y +LL
Sbjct: 1244 ADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLS 1293
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 3e-41
Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 36/250 (14%)
Query: 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236
+ + RIL DVS V+ ++ +LG G+GKTTL+ A++G++ SG+I + G
Sbjct: 13 AKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQ 72
Query: 237 ELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
Q+ AY+ Q D+ +TVRETL ++ A L K +
Sbjct: 73 PRKPDQFQKCVAYVRQDDILLPGLTVRETLTYT-------------AILRLPRKSSDAIR 119
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
++ + L A T +G + +GISGG+++RV+
Sbjct: 120 KKRVE----------------------DVLLRDLALTRIGGNLVKGISGGERRRVSIAVQ 157
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
L+ VL +DE ++GLDS T + L Q+ + +I+ + QP + + LFD I+L
Sbjct: 158 LLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILL 216
Query: 417 LSEGQIVYQG 426
LS G+IVY G
Sbjct: 217 LSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 6e-39
Identities = 82/302 (27%), Positives = 143/302 (47%), Gaps = 51/302 (16%)
Query: 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG 229
+ + +L L VS V+P + LLGP GAGKTTL+ LAG L SG
Sbjct: 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SG 60
Query: 230 KITYCGHELNEFVPQ--RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSR 287
+I G+++ + + R Y+ Q + E+TVRE L+F R G LS+
Sbjct: 61 EILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYG----------LSK 110
Query: 288 REKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347
E + I + +L++ GL+ A+ V R +SGG
Sbjct: 111 EEAEERI------------------------EELLELFGLEDKANKKV-----RTLSGGM 141
Query: 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA--LLQPAP 405
K+R++ L+ +L +DE ++GLD + +I + L+++ VT++++ +L+
Sbjct: 142 KQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE--- 198
Query: 406 ETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKC--PERKGVADFLQEVTSKKDQEQ 463
E +L D +I+L++G+I+ +G + + E F G PER +A+ L+ + K +E+
Sbjct: 199 EAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEE 258
Query: 464 YW 465
Sbjct: 259 LA 260
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 3e-37
Identities = 43/91 (47%), Positives = 60/91 (65%)
Query: 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVT 395
G+E RGISGG++KRV+ E LV A+VL D + GLDSST +I K ++ M +L T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 396 MIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
V+L Q + E YDLFD +++L EG+ +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 7e-36
Identities = 147/629 (23%), Positives = 282/629 (44%), Gaps = 70/629 (11%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG-KLGKDLRASGKITYCGHELNEFV 242
+++L++V+G +P +T L+G GAGKTTLM LAG K G + G I G +
Sbjct: 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIRISGFPKKQET 950
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
R Y Q+D+H ++TVRE+L +S A
Sbjct: 951 FARISGYCEQNDIHSPQVTVRESLIYS--------------------------------A 978
Query: 303 FMK-AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
F++ V+ +E + D V++++ LD D +VG G+S Q+KR+T LV
Sbjct: 979 FLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANP 1038
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE-G 420
++++MDE ++GLD+ + + ++ V T++ + QP+ + ++ FD+++L+ G
Sbjct: 1039 SIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGG 1097
Query: 421 QIVYQGP----RDNVLEFFE--HMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRY 474
Q++Y GP ++E+FE K E+ A ++ EV+S + +
Sbjct: 1098 QVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGI-------- 1149
Query: 475 IPVSDFVEGFKSFHMGQQ---IASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFARE 531
DF E +KS + Q+ + +L P +Y S W F++C ++
Sbjct: 1150 ----DFAEHYKSSSLYQRNKALVKELSTP---PPGASDLYFATQYSQSTWGQFKSCLWKQ 1202
Query: 532 WLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNG 591
W R+ + + F +L+ T++++ + N + GA++ ++L + N
Sbjct: 1203 WWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINN 1262
Query: 592 FAE-NAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDP 650
+ M + +FY++R Y + +A+ + IP ++ +T + + Y + ++
Sbjct: 1263 CSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEW 1322
Query: 651 AASRFFK-QFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDD 709
A++FF F++FFS + V+ +V + F L + GF + +
Sbjct: 1323 TAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNL-FSGFFIPRPK 1381
Query: 710 IEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSI-NQPTIGKVLLKIRGFSTES 768
I + W Y+I P+ + L+V+++ G + K P PTI + G+ +
Sbjct: 1382 IPKWWVWYYWICPVAWTVYGLIVSQY--GDVEDTIKVPGGAPDPTIKWYIQDHYGY--DP 1437
Query: 769 NWYWIGVGALTGYSFLFNFLFIAALAYLN 797
++ L G++ F F+F + LN
Sbjct: 1438 DFMGPVAAVLVGFTVFFAFIFAFCIRTLN 1466
|
Length = 1470 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 1e-32
Identities = 142/577 (24%), Positives = 252/577 (43%), Gaps = 85/577 (14%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL-GKDLRASGKITYCGHELNEFVPQ 244
IL V+G+ P + +LGP G+GK+TL+ ALAG++ G + +G I + + + +
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNF--TGTILANNRKPTKQILK 140
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
RT +++Q D+ + +TVRETL F + L L+++EK
Sbjct: 141 RT-GFVTQDDILYPHLTVRETLVFC-------SLLRLPKSLTKQEK-------------- 178
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
LV + V+ LGL C +T++G+ RGISGG++KRV+ ++ ++L
Sbjct: 179 ----------ILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 228
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424
+DE ++GLD++ +++ L + T++ ++ QP+ Y +FD +++LSEG+ ++
Sbjct: 229 ILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLF 287
Query: 425 QGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQP---------YRY- 474
G + + +FE +GF ADFL ++ + Q + +P Y
Sbjct: 288 FGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347
Query: 475 --------IPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKW-ELFR 525
I +S F + F V ++ H +S ++ IS W F
Sbjct: 348 LAPKVKAAIEMSHFPQANARF-----------VGSASTKEHRSS---DRISISTWFNQFS 393
Query: 526 ACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLL 585
R K SF + FQ+ +L+ +++ + D G LFF +
Sbjct: 394 ILLQRSLKERKHESF-NTLRVFQVIAAALLAGLMWWHS-----DFRDVQDRLGLLFFISI 447
Query: 586 NIMFNGFAENAMTVLRLP----IFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVAL 641
F G + +V P IF K+R Y ++ + + +P+ ++ TI++ +
Sbjct: 448 ---FWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTV 504
Query: 642 TYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLG 701
TY+ G P F L +S L + A ++T+ T +L + G
Sbjct: 505 TYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTG 564
Query: 702 GFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGG 738
GF + K + + W YIS Y LL+N G
Sbjct: 565 GFYVHK--LPSCMAWIKYISTTFY-SYRLLINVQYGE 598
|
Length = 659 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 3e-32
Identities = 42/91 (46%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VP 243
ILKD SG+VKP M L+LG PG+G +TL+ ALA + ++ G I Y G EF
Sbjct: 22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81
Query: 244 QRTCAYISQHDLHHGEMTVRETLDFSGRCLG 274
Y+S+ D+H +TVRETLDF+ RC G
Sbjct: 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-25
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
K ++LK+VSG KP +T ++GP GAGK+TL+ ALAG+ L SG++ G
Sbjct: 16 SPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TGLGVSGEVLINGRP 74
Query: 238 LNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 275
L++ ++ Y+ Q D+ H +TVRETL F+ + G+
Sbjct: 75 LDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 2e-23
Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 744 NKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSN 803
+K S + T+G+ +LK RG TE+ WYWIGVGAL G++ LFN LF AL YLNP+G S
Sbjct: 2 SKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKSQ 61
Query: 804 STV 806
+ V
Sbjct: 62 AIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 1e-20
Identities = 34/86 (39%), Positives = 61/86 (70%), Gaps = 1/86 (1%)
Query: 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400
RG+SGG++KRV+ LV ++L++DE ++GLDSS+ Q+ L+++ T+I ++
Sbjct: 110 RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSI 168
Query: 401 LQPAPETYDLFDDIILLSEGQIVYQG 426
QP+ E ++LFD ++LLS+G+++Y G
Sbjct: 169 HQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 1e-19
Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236
VP K ++L ++SG VKP +T L+G GAGKTTL+ LAG+ +G+I G
Sbjct: 13 VPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR-KTAGVITGEILINGR 71
Query: 237 ELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSG--RCLGVGTR 278
L++ QR+ Y+ Q D+H +TVRE L FS R L V R
Sbjct: 72 PLDKNF-QRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQR 114
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 6e-19
Identities = 62/250 (24%), Positives = 102/250 (40%), Gaps = 49/250 (19%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
KK + + D+S V + LLG GAGKTT + L G+L SG G+ +
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIR 67
Query: 240 ---EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
+ Q Y Q D E+TVRE L F R G L + E +
Sbjct: 68 TDRKAARQSLG-YCPQFDALFDELTVREHLRFYARLKG----------LPKSEIKE---- 112
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
+ +L++LGL A+ +SGG K++++
Sbjct: 113 --------------------EVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIA 147
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
L+G +VL +DE ++GLD ++ I + ++ ++I+ E L D I +
Sbjct: 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD-EAEALCDRIAI 204
Query: 417 LSEGQIVYQG 426
+S+G++ G
Sbjct: 205 MSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 85.2 bits (212), Expect = 9e-19
Identities = 61/246 (24%), Positives = 104/246 (42%), Gaps = 60/246 (24%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
L D+S +K L++GP G+GK+TL+ L G LG SG++ G +L + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKE 72
Query: 245 --RTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
R + Q+ D TV E + F LG+ P+ EI+
Sbjct: 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL--------------------PEEEIE 112
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
+ L+++GL+ D +SGGQK+RV +L
Sbjct: 113 E--------------RVEEALELVGLEGLRDRSPFT-----LSGGQKQRVAIAGVLAMDP 153
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL------FDDII 415
++L +DE + GLD + ++ + LK++ T+I+ T+DL D +I
Sbjct: 154 DILLLDEPTAGLDPAGRRELLELLKKL-KAEGKTIIIV-------THDLDLLLELADRVI 205
Query: 416 LLSEGQ 421
+L +G+
Sbjct: 206 VLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 9e-19
Identities = 61/256 (23%), Positives = 111/256 (43%), Gaps = 47/256 (18%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
+ +L+D+S V+ +T L+GP GAGK+TL+ A+ G L +SG+I G + +
Sbjct: 15 GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL---KPSSGEIKIFGKPVRKR 71
Query: 242 VPQRTCAYISQH-DLHHG-EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+ Y+ Q + +TV++ + LG + L++++K+
Sbjct: 72 RKRLRIGYVPQKSSVDRSFPITVKDVVL-----LGRYGKKGWFRRLNKKDKEKV------ 120
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
D L+ +G++ D +G+ +SGGQK+RV L
Sbjct: 121 -------------------DEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQ 156
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL--LQPAPETYDLFDDIILL 417
++L +DE TG+D + +I LK++ T+++ L FD +I L
Sbjct: 157 NPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-EGKTVLMVTHDLGLVM---AYFDRVICL 212
Query: 418 SEGQIVYQGPRDNVLE 433
++ GP + VL
Sbjct: 213 -NRHLIASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 2e-17
Identities = 72/274 (26%), Positives = 114/274 (41%), Gaps = 64/274 (23%)
Query: 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGK 230
L + L S V+ ++DVS + +T LLG GAGKTTL+ +A L D SGK
Sbjct: 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGK 58
Query: 231 ITYCGHELNEFVPQRTCAYISQH-DLHHGE------MTVRETLDFSGRCLGVGTRYELLA 283
+T G + R +++ + + GE +T RE L + R L
Sbjct: 59 VTIDGVDT-----VRDPSFVRRKIGVLFGERGLYARLTARENLKYFAR----------LN 103
Query: 284 ELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343
LSR+E +A I K L L D VG
Sbjct: 104 GLSRKEIKA------RIAELSKR------------------LQLLEYLDRRVG-----EF 134
Query: 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH----ILDVTMIVA 399
S G K++V LV ++L +DE ++GLD T + F+KQ+ + ++ + I+
Sbjct: 135 STGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM- 193
Query: 400 LLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433
E L D +I+L +G++V +G + +
Sbjct: 194 -----QEVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 6e-17
Identities = 66/257 (25%), Positives = 114/257 (44%), Gaps = 59/257 (22%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP--- 243
L +VS ++P ++G G+GK+TL+ L G G + G ++ + P
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADL 537
Query: 244 QRTCAYISQ-HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+R Y+ Q L +G T+R+ + LG P + +
Sbjct: 538 RRNIGYVPQDPRLFYG--TLRDNI-----ALGA--------------------PYADDEE 570
Query: 303 FMKAVAVAGQETSLVTDYV-LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
++A +AG VT++V GLD +G E R +SGGQ++ V L+
Sbjct: 571 ILRAAELAG-----VTEFVRRHPDGLD----MQIG-ERGRSLSGGQRQAVALARALLRDP 620
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV-----ALLQPAPETYDLFDDIIL 416
+L +DE ++ +D+ + + LK+ + T+++ +LL DL D II+
Sbjct: 621 PILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRTSLL-------DLVDRIIV 671
Query: 417 LSEGQIVYQGPRDNVLE 433
+ G+IV GP+D VLE
Sbjct: 672 MDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 65/256 (25%), Positives = 111/256 (43%), Gaps = 54/256 (21%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
IL D+S + +T +LGP G+GK+TL+ LAG L SG++ G ++ P+
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKE 73
Query: 245 --RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+ AY+ Q +TV E L L R
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYE-----------------LVLLGRY-------------P 103
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
+ +E + + L++LGL+ AD V + +SGG+++RV L
Sbjct: 104 HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRVLIARALAQETP 158
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF------DDIIL 416
+L +DE ++ LD + ++ + L+ + +T+++ L +DL D +IL
Sbjct: 159 ILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVL-------HDLNLAARYADHLIL 211
Query: 417 LSEGQIVYQGPRDNVL 432
L +G+IV QG + VL
Sbjct: 212 LKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 6e-15
Identities = 69/269 (25%), Positives = 111/269 (41%), Gaps = 53/269 (19%)
Query: 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC 234
+L + + LKDVS + P L+GP GAGK+TL+ L G + SG +
Sbjct: 5 NLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLID 61
Query: 235 GHELNEFVPQ------RTCAYISQHDLHH--GEMTVRETLDFSGRCLGVGTRYELLAELS 286
G ++N+ + R I Q + ++V E + SGR T L
Sbjct: 62 GTDINKLKGKALRQLRRQIGMIFQQ--FNLIERLSVLENV-LSGRLGRRSTWRSLFGLFP 118
Query: 287 RREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346
+ EKQ + L+ +GL A D++ SGG
Sbjct: 119 KEEKQRAL-------------------------AALERVGLLDKAYQRA-DQL----SGG 148
Query: 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406
Q++RV L+ ++ DE LD +++ Q+ LK++ +T+IV+L Q
Sbjct: 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV--- 205
Query: 407 TYDL----FDDIILLSEGQIVYQGPRDNV 431
DL D I+ L +G+IV+ GP +
Sbjct: 206 --DLAREYADRIVGLKDGRIVFDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 8e-15
Identities = 67/248 (27%), Positives = 105/248 (42%), Gaps = 48/248 (19%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
SVR L D+S V+P LLGP G GKTTL+ +AG D SG+I G ++
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGV 67
Query: 242 VP-QRTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
P +R + Q H +TV E + F + GV AE+ R ++
Sbjct: 68 PPERRNIGMVFQDYALFPH--LTVAENIAFGLKLRGVPK-----AEIRARVREL------ 114
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
L+++GL+ + +SGGQ++RV L
Sbjct: 115 -----------------------LELVGLEGLLNRYP-----HELSGGQQQRVALARALA 146
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
++L +DE + LD+ ++ + LK++ L +T I E L D I +++
Sbjct: 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMN 205
Query: 419 EGQIVYQG 426
EG+IV G
Sbjct: 206 EGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 1e-14
Identities = 62/275 (22%), Positives = 106/275 (38%), Gaps = 60/275 (21%)
Query: 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI--- 231
+L LKDVS ++ LL+GP G+GK+TL+ L G L K SG++
Sbjct: 8 NLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG-LLKP--TSGEVLVD 64
Query: 232 -TYCGHELNEFVPQRTCAYISQHDLHHG-EMTVRETLDFSGRCLGVGTRYELLAELSRRE 289
E + ++ + Q+ TV + + F LG+
Sbjct: 65 GLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL-------------- 110
Query: 290 KQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKK 349
P EI+ L+++GL+ D + SGGQK+
Sbjct: 111 ------PREEIEE--------------RVAEALELVGLEELLDRPPFNL-----SGGQKQ 145
Query: 350 RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409
RV +L +L +DE + GLD ++ + LK++ T+I+ T+D
Sbjct: 146 RVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIV-------THD 198
Query: 410 L------FDDIILLSEGQIVYQGPRDNVLEFFEHM 438
L D +++L +G+I+ G + E +
Sbjct: 199 LELVLEYADRVVVLDDGKILADGDPAEIFNDAELL 233
|
Length = 235 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 1e-14
Identities = 69/266 (25%), Positives = 120/266 (45%), Gaps = 61/266 (22%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP- 243
L D++ +K ++T L+G GAGK+TL+ L G L G+I G +L + P
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPE 391
Query: 244 --QRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
++ +++SQ+ L G T+RE + LLA ++ EI
Sbjct: 392 AWRKQISWVSQNPYLFAG--TIRENI--------------LLARPDASDE--------EI 427
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
A + + ++V K GL DT++G E G+SGGQ +R+ L+
Sbjct: 428 IAALDQAGLL--------EFVPKPDGL----DTVIG-EGGAGLSGGQAQRLALARALLSP 474
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-----FDDII 415
A++L +DE + LD+ T I + L++ T++V T+ L D I+
Sbjct: 475 ASLLLLDEPTAHLDAETEQIILQALQE--LAKQKTVLVI-------THRLEDAADADRIV 525
Query: 416 LLSEGQIVYQGPRDNVLE---FFEHM 438
+L G++V QG + + E + ++
Sbjct: 526 VLDNGRLVEQGTHEELSEKQGLYANL 551
|
Length = 559 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 2e-14
Identities = 64/254 (25%), Positives = 106/254 (41%), Gaps = 51/254 (20%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
+L+D+S + P ++G G+GK+TL+ L G G+I G +LN+
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLAS 544
Query: 245 --RTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
R Y+ Q L G ++RE + P+ +
Sbjct: 545 LRRQVGYVLQDPFLFSG--SIRENIALG-------------------------NPEATDE 577
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
++A +AG ++ I L + DT VG E +SGGQ++R+ L+
Sbjct: 578 EIIEAAQLAG-----AHEF---IENLPMGYDTPVG-EGGANLSGGQRQRLALARALLSKP 628
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA--PETYDLFDDIILLSE 419
+L +DE ++ LD T I + L Q + T+I+ A T D II+L +
Sbjct: 629 KILLLDEATSALDPETEAIILQNLLQ--ILQGRTVIII----AHRLSTIRSADRIIVLDQ 682
Query: 420 GQIVYQGPRDNVLE 433
G+IV QG + +L
Sbjct: 683 GKIVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 2e-14
Identities = 66/257 (25%), Positives = 102/257 (39%), Gaps = 68/257 (26%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
R L VS + M LLGP GAGKTTLM LA SG I G ++ +
Sbjct: 11 GKKRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQ 66
Query: 242 VP--QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+R Y+ Q + TVRE LD+ G+ P E
Sbjct: 67 PQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGI--------------------PSKE 106
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
+ A V D VL+++ L A +G +SGG ++RV + LVG
Sbjct: 107 VKA---RV-----------DEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVG 147
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQM---------VHIL-DVTMIVALLQPAPETYD 409
++L +DE + GLD + L ++ HI+ DV +
Sbjct: 148 DPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLC----------- 196
Query: 410 LFDDIILLSEGQIVYQG 426
+ + +L++G++V++G
Sbjct: 197 --NQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 3e-14
Identities = 71/277 (25%), Positives = 110/277 (39%), Gaps = 64/277 (23%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
S +LKDV+ ++ +LLGP G GK+TL+ +AG SG+I G ++ +
Sbjct: 15 SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLP 71
Query: 243 PQ-RTCAYISQ------HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIK 295
P+ R A + Q H MTV E + F L K G+
Sbjct: 72 PEKRGIAMVFQNYALYPH------MTVYENIAFG---L----------------KLRGVP 106
Query: 296 PDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGE 355
EID K V V K+LGL+ + +SGGQ++RV
Sbjct: 107 KA-EID---KRVKE-----------VAKLLGLEHLLNR-----KPLQLSGGQRQRVALAR 146
Query: 356 MLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415
LV V +DE + LD+ + +K++ L T I E L D I+
Sbjct: 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIV 205
Query: 416 LLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
++++G+I G + ++ P VA F+
Sbjct: 206 VMNDGRIQQVGTPLEL--------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 4e-14
Identities = 67/250 (26%), Positives = 106/250 (42%), Gaps = 57/250 (22%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE---- 240
+L+DVS VKP ++GP GAGK+TL+ A+ G L SG I G L +
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP---TSGSIRVFGKPLEKERKR 69
Query: 241 --FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+VPQR D ++VR+ + +G+ L LS+ +K
Sbjct: 70 IGYVPQR---RSIDRDF---PISVRDVV-----LMGLYGHKGLFRRLSKADKAKV----- 113
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
D L+ +GL AD +G+ +SGGQ++RV LV
Sbjct: 114 --------------------DEALERVGLSELADRQIGE-----LSGGQQQRVLLARALV 148
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL--LQPAPETYDLFDDIIL 416
++L +DE G+D T I + L+++ +T++V L + FD ++L
Sbjct: 149 QDPDLLLLDEPFAGVDPKTQEDIYELLREL-RREGMTILVVTHDLGLVL---EYFDRVLL 204
Query: 417 LSEGQIVYQG 426
L +V G
Sbjct: 205 L-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 4e-14
Identities = 69/271 (25%), Positives = 113/271 (41%), Gaps = 56/271 (20%)
Query: 173 LLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT 232
L H K+RS+ ++D+S + + LG GAGK+T + L G L L SGK+
Sbjct: 26 LNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL---LPTSGKV- 81
Query: 233 YCGHELNEFVPQRT-CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 291
+N P R Y+ L M + L + L E+L +
Sbjct: 82 ----RVNGKDPFRRREEYLRSIGL---VMGQKLQLWW---DLPALDSLEVLKLIYE---- 127
Query: 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRV 351
PD D F + + D++ +IL L+ + +R+ +S GQ+ R
Sbjct: 128 ---IPD---DEFAERL-----------DFLTEILDLE----GFLKWPVRK-LSLGQRMRA 165
Query: 352 TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411
L+ VL++DE + GLD + I +FLK+ T+++ T+ F
Sbjct: 166 ELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLT-------THI-F 217
Query: 412 DDI-------ILLSEGQIVYQGPRDNVLEFF 435
DDI +L+ +GQ+V+ G + E F
Sbjct: 218 DDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248
|
Length = 325 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 5e-14
Identities = 68/274 (24%), Positives = 112/274 (40%), Gaps = 52/274 (18%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
S + L DV+ V + LLGP G+GK+TL+ +AG D SG+I G +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVH 68
Query: 243 PQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
+ R ++ QH +TVR+ + F G+ R K
Sbjct: 69 ARDRKIGFVFQHYALFKHLTVRDNIAF-----GLEIR----------------KHPKA-- 105
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
+ + +L+++ L +GD +SGGQ++RV L
Sbjct: 106 -----------KIKARVEELLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEP 149
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
VL +DE LD+ ++ +L+++ + VT V + E ++ D I+++S G+
Sbjct: 150 QVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTT-VFVTHDQEEAMEVADRIVVMSNGK 208
Query: 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455
I G D E ++H P V FL EV
Sbjct: 209 IEQIGSPD---EVYDH-----PANPFVMSFLGEV 234
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 1e-13
Identities = 64/263 (24%), Positives = 109/263 (41%), Gaps = 58/263 (22%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
+ L DVS V+P + L+GP GAGKTTL ++G L SG + + G ++ P
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPP 69
Query: 244 QRTCAY-IS---QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
I Q E+TV E + + + T LL +RRE++
Sbjct: 70 HEIARLGIGRTFQIPRLFPELTVLENVMVAAQA---RTGSGLLLARARREERE------- 119
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
A A + +L+ +GL AD G+ +S GQ++R+ L
Sbjct: 120 ------ARERAEE--------LLERVGLADLADRPAGE-----LSYGQQRRLEIARALAT 160
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMV----------HILDVTMIVALLQPAPETYD 409
+L +DE + GL+ T ++ + ++++ H +DV M
Sbjct: 161 DPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVM------------S 208
Query: 410 LFDDIILLSEGQIVYQGPRDNVL 432
L D + +L +G+++ +G D V
Sbjct: 209 LADRVTVLDQGRVIAEGTPDEVR 231
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 4e-13
Identities = 58/248 (23%), Positives = 96/248 (38%), Gaps = 86/248 (34%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+L D+S ++ + +LGP GAGK+TL+ LAG L SG+I G +
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKD------- 62
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
LA LS +E
Sbjct: 63 -------------------------------------LASLSPKE-------------LA 72
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
+ +A Q L++LGL AD + +SGG+++RV L +L
Sbjct: 73 RKIAYVPQ--------ALELLGLAHLADRPFNE-----LSGGERQRVLLARALAQEPPIL 119
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL------FDDIILLS 418
+DE ++ LD + ++ + L+++ T+++ L +DL D +ILL
Sbjct: 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVL-------HDLNLAARYADRVILLK 172
Query: 419 EGQIVYQG 426
+G+IV QG
Sbjct: 173 DGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 5e-13
Identities = 61/258 (23%), Positives = 107/258 (41%), Gaps = 51/258 (19%)
Query: 172 GLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI 231
L V+ LK VS ++ ++GP G+GK+TL L + G L D SG++
Sbjct: 5 NLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTL-LNILGGL--DRPTSGEV 61
Query: 232 TYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG-VGTRYELLAELSRREK 290
G +++ +++ +E F R +G V + LL +L+ E
Sbjct: 62 RVDGTDIS-------------------KLSEKELAAFRRRHIGFVFQSFNLLPDLTALEN 102
Query: 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKR 350
++ + V +E + +L+ +GL + E+ SGGQ++R
Sbjct: 103 ---------VELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPS-EL----SGGQQQR 148
Query: 351 VTTGEMLVGTANVLYMDEISTG-LDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409
V L ++ DE TG LDS T ++ + L+++ T++V T+D
Sbjct: 149 VAIARALANDPKIILADE-PTGNLDSETGKEVMELLRELNKEAGTTIVVV-------THD 200
Query: 410 -----LFDDIILLSEGQI 422
D II L +G+I
Sbjct: 201 PELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 1e-12
Identities = 65/256 (25%), Positives = 101/256 (39%), Gaps = 61/256 (23%)
Query: 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC 234
++ S K+ IL D+S + + L G GAGKTTL LAG L K +SG I
Sbjct: 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG-LIK--ESSGSILLN 60
Query: 235 GHELNEFVPQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
G + +++ Y+ Q D +VRE L L EL +QA
Sbjct: 61 GKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLG------------LKELDAGNEQA- 107
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353
+ VLK L L + +SGGQK+R+
Sbjct: 108 -------------------------ETVLKDLDLYALK-----ERHPLSLSGGQKQRLAI 137
Query: 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-F- 411
L+ ++L DE ++GLD ++ + +++ + +IV T+D F
Sbjct: 138 AAALLSGKDLLIFDEPTSGLDYKNMERVGELIRE-LAAQGKAVIVI-------THDYEFL 189
Query: 412 ----DDIILLSEGQIV 423
D ++LL+ G IV
Sbjct: 190 AKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 1e-12
Identities = 67/247 (27%), Positives = 113/247 (45%), Gaps = 53/247 (21%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ-- 244
L +VS ++ ++G G+GK+TL+ LAG SG + G ++ + P
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76
Query: 245 -RTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID- 301
R Y+ Q L +G T+R+ + LG P D
Sbjct: 77 RRNIGYVPQDVTLFYG--TLRDNI-----TLG----------------------APLADD 107
Query: 302 -AFMKAVAVAGQETSLVTDYVLKI-LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
++A +AG VTD+V K GLD +G E RG+SGGQ++ V L+
Sbjct: 108 ERILRAAELAG-----VTDFVNKHPNGLD----LQIG-ERGRGLSGGQRQAVALARALLN 157
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419
+L +DE ++ +D ++ ++ + L+Q+ + D T+I+ +P+ DL D II++
Sbjct: 158 DPPILLLDEPTSAMDMNSEERLKERLRQL--LGDKTLIIITHRPS--LLDLVDRIIVMDS 213
Query: 420 GQIVYQG 426
G+IV G
Sbjct: 214 GRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 2e-12
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 179 SKK-RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
SK+ L D+S V+ + LLGP GAGKTTL+ + G L D SG+I G +
Sbjct: 7 SKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKD 63
Query: 238 LNEFVPQ--RTCAYISQHDLHHGEMTVRETLDFSG 270
+ + + R Y+ + + +TVRE L SG
Sbjct: 64 IKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSG 98
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 65/261 (24%), Positives = 104/261 (39%), Gaps = 64/261 (24%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+ R L DVS V+P R LLGP GAGK+TL L G+I+ GH+L
Sbjct: 13 ARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-A 68
Query: 243 PQRTCAYI------SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
P+ A + DL +++VR+ L + + L LSR E +A I
Sbjct: 69 PRAALARLGVVFQQPTLDL---DLSVRQNLRY----------HAALHGLSRAEARARIAE 115
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
L LGL AD V R ++GG ++RV
Sbjct: 116 L------------------------LARLGLAERADDKV-----RELNGGHRRRVEIARA 146
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH-----ILDVTMIVALLQPAPETYDLF 411
L+ +L +DE + GLD ++ I ++ + +L T +V ++
Sbjct: 147 LLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD------- 199
Query: 412 DDIILLSEGQIVYQGPRDNVL 432
D +++L G+++ G +
Sbjct: 200 DRLVVLHRGRVLADGAAAELR 220
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 3e-12
Identities = 62/263 (23%), Positives = 100/263 (38%), Gaps = 60/263 (22%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
P+ SV+ L DVS +K L+G G+GK+TL A+ G L K SG I + G +
Sbjct: 12 PTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILG-LLK--PTSGSIIFDGKD 68
Query: 238 LNEFVPQ------RTCAYISQHDLH--HGEMTVRETLDFSGRCLGVGTRYELLAELSRRE 289
L + + + + Q + + MT+ E + R G ++ E E
Sbjct: 69 LLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA-VLL 127
Query: 290 KQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKK 349
G+ E V + +SGGQ++
Sbjct: 128 LLVGVGLPEE-----------------------------------VLNRYPHELSGGQRQ 152
Query: 350 RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409
RV L +L DE ++ LD S QI LK++ L +T++ T+D
Sbjct: 153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFI-------THD 205
Query: 410 L------FDDIILLSEGQIVYQG 426
L D + ++ G+IV +G
Sbjct: 206 LGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 4e-12
Identities = 56/238 (23%), Positives = 87/238 (36%), Gaps = 52/238 (21%)
Query: 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH-----ELNEFVP--QRTCA 248
+T + G GAGK+TL+ +AG D G I G +P QR
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIG 78
Query: 249 YISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVA 308
+ Q + VRE L F L RE + I D +D
Sbjct: 79 LVFQQYALFPHLNVRENLAFG------------LKRKRNREDR--ISVDELLDLL----- 119
Query: 309 VAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDE 368
L+ Y ++ SGG+K+RV L +L +DE
Sbjct: 120 ---GLDHLLNRYPAQL-------------------SGGEKQRVALARALAAQPELLLLDE 157
Query: 369 ISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
+ LD + Q+ LKQ+ L++ +I + E L D I+++ +G++ Y G
Sbjct: 158 PFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 6e-12
Identities = 77/283 (27%), Positives = 118/283 (41%), Gaps = 55/283 (19%)
Query: 179 SKKR--SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236
KKR + L D+S +K + LLGP GAGK+TL+ +AG D +G+I G
Sbjct: 8 VKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGR 64
Query: 237 EL----NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA 292
L N V R ++ QH MTV + + F G+ R E +E R +
Sbjct: 65 VLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAF-----GLKVRKERPSEAEIRAR-- 117
Query: 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT 352
V L + + D +SGGQ++RV
Sbjct: 118 ----------------VEEL--------------LRLVQLEGLADRYPAQLSGGQRQRVA 147
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412
L VL +DE LD+ ++ ++L+++ L VT V + E +L D
Sbjct: 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVT-TVFVTHDQEEALELAD 206
Query: 413 DIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455
+++L++G+I GP D E ++H P + VA FL EV
Sbjct: 207 RVVVLNQGRIEQVGPPD---EVYDH-----PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 6e-12
Identities = 63/248 (25%), Positives = 97/248 (39%), Gaps = 49/248 (19%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH----EL 238
++ VS V+ + LLGP GAGKTT + L L SG+ T GH E
Sbjct: 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREP 68
Query: 239 NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
E +R + Q E+T E L R GV AE R
Sbjct: 69 REV--RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPG-----AERRER---------- 111
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
D +L +GL AD +V + SGG ++R+ LV
Sbjct: 112 -------------------IDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLV 147
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
VL++DE + GLD T + ++++++ +T I+ E L D + ++
Sbjct: 148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT-ILLTTHYMEEAEQLCDRVAIID 206
Query: 419 EGQIVYQG 426
G+I+ +G
Sbjct: 207 HGRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 6e-12
Identities = 61/257 (23%), Positives = 110/257 (42%), Gaps = 51/257 (19%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
R+L VS ++P + +LGP GAGK+TL+ AL+G+L D SG++T G LN + P
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPP- 70
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE---ID 301
+ H + +L F V ++ R ++G +P+ +
Sbjct: 71 ------EELARHRAVLPQNSSLAFPFTVQEV-------VQMGRIPHRSGREPEEDERIAA 117
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML---- 357
+ A ++G DY R +SGG+++RV +L
Sbjct: 118 QALAATDLSGLAGR---DY--------------------RTLSGGEQQRVQLARVLAQLW 154
Query: 358 --VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415
V + L++DE ++ LD + + +Q+ + ++A+L D I+
Sbjct: 155 PPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIV 212
Query: 416 LLSEGQIVYQGPRDNVL 432
LL +G+++ G +VL
Sbjct: 213 LLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 6e-12
Identities = 68/259 (26%), Positives = 106/259 (40%), Gaps = 66/259 (25%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL- 238
K++V+ + VS VKP +T LLGP GAGKTT + LAG L D +G T G ++
Sbjct: 14 VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVV 70
Query: 239 -NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+R ++S + +T RE L++ G L E A +
Sbjct: 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG----------LKGDELTARL--- 117
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
+ + LG++ D VG G S G +++V L
Sbjct: 118 ---------------------EELADRLGMEELLDRRVG-----GFSTGMRQKVAIARAL 151
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQM----------VHILDVTMIVALLQPAPET 407
V VL +DE +TGLD T + +F++Q+ HI+ E
Sbjct: 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ------------EV 199
Query: 408 YDLFDDIILLSEGQIVYQG 426
L D +++L G++VY+G
Sbjct: 200 ERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 7e-12
Identities = 63/252 (25%), Positives = 111/252 (44%), Gaps = 51/252 (20%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL--NEFVPQ 244
L +VS + R+ LGP GAGK+T M + G L D SG + CG ++ N Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQ 74
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
R Y+ +H+ + +M VRE L F G+ + L +R ++
Sbjct: 75 RNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQ-----LLKQRVEE------------- 116
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
+++++GL +G +S G ++RV + L+ VL
Sbjct: 117 ----------------MIELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQALIHDPKVL 155
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA--LLQPAPETYDLFDDIILLSEGQI 422
+DE +TGLD + +I +K + D T+I++ ++Q E + D +I++++G+I
Sbjct: 156 ILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIMQ---EVEAICDRVIIINKGKI 210
Query: 423 VYQGPRDNVLEF 434
V D +
Sbjct: 211 VADKKLDELSAA 222
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 7e-12
Identities = 66/279 (23%), Positives = 106/279 (37%), Gaps = 66/279 (23%)
Query: 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC 234
L ++ V+ + DVS ++ L+G G+GK+TL LAG L SG I +
Sbjct: 295 GLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFD 351
Query: 235 GHELN----EFVPQRTCAYIS-QH-----DLHHGEMTVRETLDFSGRCLGVGTRYELLAE 284
G +L+ E R + Q + MTV + +LAE
Sbjct: 352 GQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR---MTVGD----------------ILAE 392
Query: 285 LSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344
R G E +L+++GL D +S
Sbjct: 393 PLRIHGGGS-----------------GAERRARVAELLELVGLP----PEFLDRYPHELS 431
Query: 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404
GGQ++RV L +L +DE + LD S Q+ LK + L +T +
Sbjct: 432 GGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFI----- 486
Query: 405 PETYDLF------DDIILLSEGQIVYQGPRDNVLEFFEH 437
++DL D + ++ +G+IV +GP + V E +H
Sbjct: 487 --SHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQH 523
|
Length = 539 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 1e-11
Identities = 43/192 (22%), Positives = 73/192 (38%), Gaps = 46/192 (23%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+ +S + +L GP G+GKTTL+ +AG L A+G I G ++++
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDIDDPDVAE 73
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
C Y+ + +TV E L+F LG + +I A ++
Sbjct: 74 ACHYLGHRNAMKPALTVAENLEFWAAFLG--------------------GEELDIAAALE 113
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
AV +A + +S GQK+RV +LV +
Sbjct: 114 AVGLAP-----------------------LAHLPFGYLSAGQKRRVALARLLVSNRPIWI 150
Query: 366 MDEISTGLDSST 377
+DE + LD++
Sbjct: 151 LDEPTAALDAAA 162
|
Length = 207 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 2e-11
Identities = 59/263 (22%), Positives = 95/263 (36%), Gaps = 65/263 (24%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
++ L+ VS V+ + LLG GAGKTTL+ + G + SG+I + G ++ P
Sbjct: 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPP 72
Query: 244 QRTC----AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
AY+ + +TV E L LL R + + D E
Sbjct: 73 HERARLGIAYVPEGRRIFPRLTVEENL--------------LLG-AYARRDKEAQERDLE 117
Query: 300 IDAFMKAVAVAGQETSLVTDY--VLKILGLDICADTMVGDEMRRG----ISGGQKKRVTT 353
V + LK E R +SGG+++ +
Sbjct: 118 E----------------VYELFPRLK--------------ERRNQRAGTLSGGEQQMLAI 147
Query: 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL-DVTMIVALL--QPAPETYDL 410
L+ +L +DE S GL I + + + + L + LL Q A ++
Sbjct: 148 ARALMSRPKLLLLDEPSEGLAPK----IVEEIFEAIKELRKEGGMTILLVEQNARFALEI 203
Query: 411 FDDIILLSEGQIVYQGPRDNVLE 433
D +L G+IV G +L
Sbjct: 204 ADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 59/265 (22%), Positives = 107/265 (40%), Gaps = 57/265 (21%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
+ + DVS V+P + L+GP GAGKTTL + G SG + + G ++ P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPP 73
Query: 244 QRTCAY-IS---QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
R I+ Q +TV E + +G R L L R + +
Sbjct: 74 HRIARLGIARTFQITRLFPGLTVLENV-----AVGAHARLGLSGLLGRPRARKEER---- 124
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
+A A + +L+ +GL AD G+ +S GQ++R+ L
Sbjct: 125 -----EARERARE--------LLEFVGLGELADRPAGN-----LSYGQQRRLEIARALAT 166
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQ----------MV-HILDVTMIVALLQPAPETY 408
+L +DE + GL+ T ++ + +++ ++ H + + M
Sbjct: 167 QPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVM------------ 214
Query: 409 DLFDDIILLSEGQIVYQGPRDNVLE 433
L D I++L+ G+++ +G + V
Sbjct: 215 GLADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-11
Identities = 68/274 (24%), Positives = 109/274 (39%), Gaps = 49/274 (17%)
Query: 168 ESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA 227
E + + +L + + LKDV+ + M ++GP GAGK+TL+ +L G +
Sbjct: 1 EMMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT--- 57
Query: 228 SGKITYCGHELNEFVP------QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYEL 281
SG+I + G ++ + +R I Q ++V E + GR T L
Sbjct: 58 SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENV-LLGRLGYTSTWRSL 116
Query: 282 LAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341
S+ +K + DA E + D + A T+
Sbjct: 117 FGLFSKEDKAQAL------DAL---------ERVGILDKAYQR------ASTL------- 148
Query: 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401
SGGQ++RV LV ++ DE LD + ++ LK + +T+IV L
Sbjct: 149 --SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLH 206
Query: 402 QPAPETYDL----FDDIILLSEGQIVYQGPRDNV 431
Q DL D II L G+IV+ GP +
Sbjct: 207 Q-----VDLAKKYADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 7e-11
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDV--TMIV 398
RG+S Q+KR+T G L ++L++DE ++GLDS + I +FLK++ D ++
Sbjct: 107 RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLA---DSGQAILC 163
Query: 399 ALLQPAPETYDLFDDIILLSE-GQIVYQG 426
+ QP+ ++ FD ++LL G+ VY G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 7e-11
Identities = 63/276 (22%), Positives = 107/276 (38%), Gaps = 59/276 (21%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-LRASGKITYCGH 236
+ V ++DVS V+P + ++G G+GK+TL LAL G L + SG++ G
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 237 ELNEFVPQ-------RTCAYISQHDLHH--GEMTVRETLDFSGRCLGVGTRYELLAELSR 287
+L + + A I Q + MT+ + + + R G G+R E
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVE 135
Query: 288 REKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347
+Q G+ D + + SGG
Sbjct: 136 LLEQVGLPDPERRDRYPHQL------------------------------------SGGM 159
Query: 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407
++RV L +L DE +T LD +T QI LK + L + ++ T
Sbjct: 160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFI-------T 212
Query: 408 YDL------FDDIILLSEGQIVYQGPRDNVLEFFEH 437
+DL D ++++ +G+IV GP + +L +H
Sbjct: 213 HDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQH 248
|
Length = 539 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 7e-11
Identities = 60/257 (23%), Positives = 109/257 (42%), Gaps = 55/257 (21%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
RIL D+S + ++T L+GP G GK+TL+ A +L SG + ++ +
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQ--SGTVFLGDKPISMLSSR 72
Query: 245 ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
R A + QH L +TVRE + + GR L LS +
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAY-GR----SPWLSLWGRLSAEDNA---------- 117
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
V A ++T ++ AD + D +SGGQ++R +L
Sbjct: 118 ----RVNQAMEQT-----------RINHLADRRLTD-----LSGGQRQRAFLAMVLAQDT 157
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL------FDDII 415
V+ +DE +T LD + ++ + ++++ + T++ L +DL D ++
Sbjct: 158 PVVLLDEPTTYLDINHQVELMRLMREL-NTQGKTVVTVL-------HDLNQASRYCDHLV 209
Query: 416 LLSEGQIVYQGPRDNVL 432
+L+ G ++ QG + V+
Sbjct: 210 VLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 8e-11
Identities = 66/276 (23%), Positives = 105/276 (38%), Gaps = 90/276 (32%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA-SGKITYCGHELNEFVP 243
+L DVS ++P + +LGP GAGK+TL+ AL+G +L SG++ G L ++ P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSG----ELSPDSGEVRLNGRPLADWSP 71
Query: 244 Q---RTCAYISQHDLHHGEMTVRETLDFS---------GRCLGVGTRYELLAELSRREKQ 291
R A + QH +L F GR A +
Sbjct: 72 AELARRRAVLPQH----------SSLSFPFTVEEVVAMGR-----------APHGLSRAE 110
Query: 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRV 351
D + A + V +A DY +SGG+++RV
Sbjct: 111 D----DALVAAALAQVDLAHLAGR---DY--------------------PQLSGGEQQRV 143
Query: 352 TTGEMLV------GTANVLYMDEISTGLDSS---TTFQICKFLKQMVHILDVTMIVALLQ 402
+L G L +DE ++ LD + ++ +Q+ H + +IV L
Sbjct: 144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRL---ARQLAHERGLAVIVVL-- 198
Query: 403 PAPETYDL------FDDIILLSEGQIVYQGPRDNVL 432
+DL D I+LL +G++V G VL
Sbjct: 199 -----HDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 8e-11
Identities = 61/263 (23%), Positives = 93/263 (35%), Gaps = 67/263 (25%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
+IL VS V + LLG GAGKTTL+ + G L SG I + G ++ P
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPP 69
Query: 244 QRTC----AYISQHDLHHGEMTVRETLDFSGRCLGVGTR-------YELLAELSRREKQA 292
Y+ + E+TV E L R YEL L R KQ
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQL 129
Query: 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT 352
A T+ SGG+++ +
Sbjct: 130 --------------------------------------AGTL---------SGGEQQMLA 142
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL--QPAPETYDL 410
L+ +L +DE S GL +I + ++++ VT+ LL Q A ++
Sbjct: 143 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL-RDEGVTI---LLVEQNARFALEI 198
Query: 411 FDDIILLSEGQIVYQGPRDNVLE 433
D +L G++V +G +L
Sbjct: 199 ADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 9e-11
Identities = 62/253 (24%), Positives = 109/253 (43%), Gaps = 69/253 (27%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
++ + LKD++ V + ++GP G+GK++L+ AL G+L K SG ++ G
Sbjct: 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG-- 66
Query: 238 LNEFVPQRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
+ AY+SQ + +G T+RE + F G ++ R ++
Sbjct: 67 --------SIAYVSQEPWIQNG--TIRENILF-------GKPFD-----EERYEKV---- 100
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDEMRRGI--SGGQKKRVTT 353
I A +L D L+IL D T +G+ +GI SGGQK+R++
Sbjct: 101 ---IKA-----------CALEPD--LEILPDGD---LTEIGE---KGINLSGGQKQRISL 138
Query: 354 GEMLVGTANVLYMDEISTGLDSSTT---FQ--ICKFLKQMVHILDVTMIVALLQPAPETY 408
+ A++ +D+ + +D+ F+ I L + VT + LL A
Sbjct: 139 ARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHA---- 194
Query: 409 DLFDDIILLSEGQ 421
D I++L G+
Sbjct: 195 ---DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 1e-10
Identities = 66/259 (25%), Positives = 102/259 (39%), Gaps = 55/259 (21%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG---HELN 239
I+ V P +T LLGP G+GK+TL+ LAG L D +G + G H L+
Sbjct: 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLS 69
Query: 240 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
R A + Q +TVR+ + L + R AG D
Sbjct: 70 RRARARRVALVEQDSDTAVPLTVRDVV--------------ALGRIPHRSLWAG---DSP 112
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
DA + A+A E S + D + L SGG+++RV L
Sbjct: 113 HDAAVVDRALARTELSHLADRDMSTL------------------SGGERQRVHVARALAQ 154
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL------FDD 413
+L +DE + LD + ++++ VT++ AL +DL D
Sbjct: 155 EPKLLLLDEPTNHLDVRAQLETLALVRELAAT-GVTVVAAL-------HDLNLAASYCDH 206
Query: 414 IILLSEGQIVYQGPRDNVL 432
+++L G++V GP VL
Sbjct: 207 VVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 63/258 (24%), Positives = 103/258 (39%), Gaps = 57/258 (22%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG----------KLGKDLRASGKITY 233
+ LK+++ + P ++GP GAGK+TL+ + G D+
Sbjct: 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLR---- 70
Query: 234 CGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
G +L + +R I QH +TV E + GR T LL S +K+
Sbjct: 71 -GKKLRKL--RRRIGMIFQHYNLIERLTVLENV-LHGRLGYKPTWRSLLGRFSEEDKE-- 124
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353
+A+ L+ +GL A D++ SGGQ++RV
Sbjct: 125 -----------RAL------------SALERVGLADKAYQRA-DQL----SGGQQQRVAI 156
Query: 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL--- 410
L +++ DE LD T+ Q+ +LK++ +T+I+ L Q DL
Sbjct: 157 ARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ-----VDLAKK 211
Query: 411 -FDDIILLSEGQIVYQGP 427
D I+ L G+IV+ G
Sbjct: 212 YADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 6e-10
Identities = 53/257 (20%), Positives = 102/257 (39%), Gaps = 51/257 (19%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
IL V V + +LG G+GK+TL+ + G L D G+I G ++ + +
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEE 78
Query: 245 ------RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+ + Q +TV E + F L E ++ P+
Sbjct: 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAF------------PLREHTK-------LPES 119
Query: 299 EID--AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
I MK L+++GL D +SGG +KRV
Sbjct: 120 LIRELVLMK----------------LELVGLR----GAAADLYPSELSGGMRKRVALARA 159
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
+ +L++DE ++GLD + I + ++++ L +T+I+ + D + +
Sbjct: 160 IALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD-LDSLLTIADRVAV 218
Query: 417 LSEGQIVYQGPRDNVLE 433
L++G+++ +G + +L
Sbjct: 219 LADGKVIAEGTPEELLA 235
|
Length = 263 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 7e-10
Identities = 66/256 (25%), Positives = 108/256 (42%), Gaps = 71/256 (27%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA--SGKITYCGHEL---- 238
++L D++ + P + +L GP G+GKTTL L L G LR+ G + G EL
Sbjct: 19 QVLFDINLEINPGEIVILTGPSGSGKTTL-LTLIGG----LRSVQEGSLKVLGQELYGAS 73
Query: 239 -NEFVP-QRTCAYISQ-HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIK 295
E V +R YI Q H+L G +T R+ + + EL LS +E +
Sbjct: 74 EKELVQLRRNIGYIFQAHNL-LGFLTARQNVQMA---------LELQPNLSYQEARE--- 120
Query: 296 PDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR---RGISGGQKKRVT 352
+A A +L+ +GL GD + +SGGQK+RV
Sbjct: 121 ---------RARA------------MLEAVGL--------GDHLDYYPHNLSGGQKQRVA 151
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH-----ILDVTMIVALLQPAPET 407
LV ++ DE + LDS + + + ++++ IL VT
Sbjct: 152 IARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTH-------DNRI 204
Query: 408 YDLFDDIILLSEGQIV 423
D+ D I+ + +G+++
Sbjct: 205 LDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 8e-10
Identities = 56/250 (22%), Positives = 106/250 (42%), Gaps = 55/250 (22%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
+ ++S V P + LLGP GAGKTT + G L G+IT+ G L++ + R
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKNRI 74
Query: 247 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKA 306
Y+ + + +MTV + L + LAEL K K ++ A+++
Sbjct: 75 -GYLPEERGLYPKMTVEDQLKY-------------LAELKGMPKAEIQK---KLQAWLER 117
Query: 307 VAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYM 366
+ + G++T + + +S G ++++ ++ +L +
Sbjct: 118 LEIVGKKTKKIKE-----------------------LSKGNQQKIQFISAVIHEPELLIL 154
Query: 367 DEISTGLDSSTTFQICKFLKQMVHILD---VTMIVA--LLQPAPETYDLFDDIILLSEGQ 421
DE +GLD + LK + L T+I + ++ E L D +++L +GQ
Sbjct: 155 DEPFSGLDPVNV----ELLKDAIFELKEEGATIIFSSHRMEHVEE---LCDRLLMLKKGQ 207
Query: 422 IVYQGPRDNV 431
V G +++
Sbjct: 208 TVLYGTVEDI 217
|
Length = 300 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 8e-10
Identities = 50/194 (25%), Positives = 75/194 (38%), Gaps = 41/194 (21%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP--- 243
L+ VS V P L+GP GAGK+TL+ L G + G I G L +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV---DPTEGSIAVNGVPLADADADSW 394
Query: 244 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAF 303
+ A++ QH T+ E + AE+ ++AG
Sbjct: 395 RDQIAWVPQHP-FLFAGTIAENIRL-------ARPDASDAEIREALERAG---------L 437
Query: 304 MKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
+ VA Q GL DT +G+ G+SGGQ +R+ + A +
Sbjct: 438 DEFVAALPQ-------------GL----DTPIGEG-GAGLSGGQAQRLALARAFLRDAPL 479
Query: 364 LYMDEISTGLDSST 377
L +DE + LD+ T
Sbjct: 480 LLLDEPTAHLDAET 493
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 8e-10
Identities = 59/195 (30%), Positives = 80/195 (41%), Gaps = 52/195 (26%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
++ +S V+ LLGP GAGKTT + L LG +G I+ CG E VP R
Sbjct: 22 VVDGLSFHVQRGECFGLLGPNGAGKTTTLRML---LGLTHPDAGSISLCG----EPVPSR 74
Query: 246 T------CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+ Q D + TVRE L GR G LS +A + P
Sbjct: 75 ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG----------LSAAAARALVPP--- 121
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
+L+ L+ AD VG+ +SGG K+R+T LV
Sbjct: 122 ---------------------LLEFAKLENKADAKVGE-----LSGGMKRRLTLARALVN 155
Query: 360 TANVLYMDEISTGLD 374
+VL +DE +TGLD
Sbjct: 156 DPDVLVLDEPTTGLD 170
|
Length = 306 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 69/298 (23%), Positives = 113/298 (37%), Gaps = 65/298 (21%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
+V L DVS + + ++G GAGK+TL L L L + SG + G +L
Sbjct: 15 GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTL-LRLINLLERP--TSGSVFVDGQDLT 71
Query: 240 EFVP------QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
++ I QH TV E + F LA + + E +
Sbjct: 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLE----------LAGVPKAEIKQR 121
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR---GISGGQKKR 350
+ +L+++GL D+ R +SGGQK+R
Sbjct: 122 VAE------------------------LLELVGLS--------DKADRYPAQLSGGQKQR 149
Query: 351 VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE-TYD 409
V L +L DE ++ LD TT I + LK + L +T++ L+ E
Sbjct: 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIV--LITHEMEVVKR 207
Query: 410 LFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFR 467
+ D + +L +G++V +G V E F + P+ +F+ E E+ R
Sbjct: 208 ICDRVAVLDQGRLVEEGT---VSEVFAN-----PKHAITQEFIGETLEIDLPEELLER 257
|
Length = 339 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 2e-09
Identities = 72/268 (26%), Positives = 106/268 (39%), Gaps = 66/268 (24%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
++ D+S + LLGP GAGK+T+ L G + D GKIT L E VP R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITV----LGEPVPSR 71
Query: 246 T------CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+ Q D E TVRE L GR G +S RE +A I
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG----------MSTREIEAVIPS--- 118
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
+L+ L+ AD V +SGG K+R+T L+
Sbjct: 119 ---------------------LLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVH----ILDVTMIVALLQPAPETYDLFDDII 415
+L +DE +TGLD I + L+ ++ IL T + E L D +
Sbjct: 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME------EAERLCDRLC 206
Query: 416 LLSEGQIVYQGPRDNVLEFFEHMGFKCP 443
+L G+ + +G +++ E +G C
Sbjct: 207 VLESGRKIAEGRPHALID--EQIG--CN 230
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 2e-09
Identities = 63/278 (22%), Positives = 108/278 (38%), Gaps = 68/278 (24%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA--SGKITYCG 235
P+ V+ + VS +K + ++G G+GK+ L A+ G L K G+I + G
Sbjct: 12 PTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDG 71
Query: 236 HELNEFVPQRTC-------AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE-LSR 287
+L + A I Q MT +L+ +G + +AE L
Sbjct: 72 KDLLSLSEKELRKIRGKEIAMIFQ-----DPMT---SLNPVMT---IG---DQIAEVLRL 117
Query: 288 REKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS--- 344
K K +A +A+ +L+++G+ D RR S
Sbjct: 118 HGKGLSKK-----EAKERAIE------------LLELVGIP--------DPERRLKSYPH 152
Query: 345 ---GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401
GG ++RV L +L DE +T LD + QI LK++ +I+
Sbjct: 153 ELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILI-- 210
Query: 402 QPAPETYDL------FDDIILLSEGQIVYQGPRDNVLE 433
T+DL D + ++ G+IV +GP + + +
Sbjct: 211 -----THDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 61/272 (22%), Positives = 107/272 (39%), Gaps = 67/272 (24%)
Query: 166 MLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL 225
M+E + + V LKDV+ ++ ++GP G+GK+TL L L G L
Sbjct: 1 MIE-LKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTL-LNLLGGL---D 55
Query: 226 RA-SGKITYCGHELNEFVPQ-------RTCAYISQ-HDLHHGEMTVRETLDFSGRCLGVG 276
+ SG++ G +L + + + ++ Q +L ++TV E +
Sbjct: 56 KPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL-LPDLTVLENV---------- 104
Query: 277 TRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336
EL + AG A + + V G E L+ +
Sbjct: 105 ---ELPLLI------AGKSAGRRKRAAEELLEVLGLEDRLLKKKPSE------------- 142
Query: 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG-LDSSTTFQICKFLKQMVHILDVT 395
+SGGQ++RV L+ ++ DE TG LDS T ++ + L+++ T
Sbjct: 143 ------LSGGQQQRVAIARALINNPKIILADEP-TGNLDSKTAKEVLELLRELNKERGKT 195
Query: 396 MIVALLQPAPETYDL-----FDDIILLSEGQI 422
+I+ T+D D +I L +G+I
Sbjct: 196 IIMV-------THDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
L +VS +K + L+GP G+GK+TL+ A+AG L SG+I G ++ +
Sbjct: 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLP 67
Query: 243 PQ---RTCAYISQ 252
+ R Y+ Q
Sbjct: 68 LEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 2e-09
Identities = 63/248 (25%), Positives = 102/248 (41%), Gaps = 56/248 (22%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+V L D++ + +LLGP G GKTT + +AG SG+I G ++ +
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLP 68
Query: 243 P-QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
P R A + Q+ + MTV + + F L R P EID
Sbjct: 69 PKDRDIAMVFQNYALYPHMTVYDNIAFG---------------LKLR-----KVPKDEID 108
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
++ VA ++L ++ + D + +SGGQ++RV G +V
Sbjct: 109 ERVREVA--------------ELLQIE-----HLLDRKPKQLSGGQRQRVALGRAIVREP 149
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD------LFDDII 415
V MDE + LD+ Q+ LK++ L T I T+D + D I
Sbjct: 150 KVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYV-------THDQVEAMTMADRIA 202
Query: 416 LLSEGQIV 423
++++GQI
Sbjct: 203 VMNDGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 67/253 (26%), Positives = 104/253 (41%), Gaps = 48/253 (18%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
L DVS + + LLGP G+GKTTL+ +AG D SG I + G + + Q
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQ 72
Query: 245 -RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAF 303
R ++ QH MTV + + F L V R E E R K
Sbjct: 73 ERNVGFVFQHYALFRHMTVFDNVAFG---LRVKPRSERPPEAEIRAK------------- 116
Query: 304 MKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
+LK++ LD AD +SGGQ++RV L V
Sbjct: 117 --------------VHELLKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKV 157
Query: 364 LYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI- 422
L +DE LD+ ++ ++L+++ L VT V + E ++ D ++++++G+I
Sbjct: 158 LLLDEPFGALDAKVRKELRRWLRRLHDELHVTT-VFVTHDQEEALEVADRVVVMNKGRIE 216
Query: 423 -------VYQGPR 428
VY P
Sbjct: 217 QVGTPDEVYDHPA 229
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 56.2 bits (137), Expect = 3e-09
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
R +LKDVS +KP ++GP G+GK+TL+ L SG+I G +L +
Sbjct: 13 RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDL 69
Query: 242 VPQ---RTCAYISQHD-LHHGEMTVRETLDFSG 270
+ + AY+ Q L G T+RE + SG
Sbjct: 70 DLESLRKNIAYVPQDPFLFSG--TIRENI-LSG 99
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 62/248 (25%), Positives = 102/248 (41%), Gaps = 59/248 (23%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL--NEFV 242
R+L D+S VK + LGP GAGKTT M + G + D SG+IT+ G N
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEA 70
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+R A I + +T RE L R LG+ ID
Sbjct: 71 LRRIGALIEAPGF-YPNLTARENLRLLARLLGI--------------------RKKRIDE 109
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
VL ++GL A V G S G K+R+ L+G +
Sbjct: 110 ------------------VLDVVGLKDSAKKKVK-----GFSLGMKQRLGIALALLGNPD 146
Query: 363 VLYMDEISTGLDSSTTFQICKFL----KQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
+L +DE + GLD ++ + + Q + +L + +++ +Q + D I +++
Sbjct: 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQ------KVADRIGIIN 200
Query: 419 EGQIVYQG 426
+G+++ +G
Sbjct: 201 KGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 7e-09
Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 45/251 (17%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE---FV 242
+LKD+S ++P ++GP G+GK+TL+ L SG+I G ++ +
Sbjct: 344 VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDS 400
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
++ +SQ D T+RE + G E+ K A
Sbjct: 401 LRKRIGIVSQ-DPLLFSGTIRENIAL-------GRPDATDEEIEEALKLANAHEF----- 447
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
I L DT+VG E +SGGQ++R+ L+
Sbjct: 448 ---------------------IANLPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPP 485
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422
+L +DE ++ LD+ T I LK+++ +I L T D II+L G+I
Sbjct: 486 ILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLS----TIKNADRIIVLDNGRI 541
Query: 423 VYQGPRDNVLE 433
V +G + +L
Sbjct: 542 VERGTHEELLA 552
|
Length = 567 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 8e-09
Identities = 57/195 (29%), Positives = 79/195 (40%), Gaps = 52/195 (26%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
++ +S V LLGP GAGK+T+ + G D +GKIT L VP R
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITV----LGVPVPAR 108
Query: 246 T------CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+ Q D E TVRE L GR G+ TR E
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTR--------------------E 148
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
I+A + ++ L+ L+ AD V D +SGG K+R+T L+
Sbjct: 149 IEAVIPSL--------------LEFARLESKADARVSD-----LSGGMKRRLTLARALIN 189
Query: 360 TANVLYMDEISTGLD 374
+L +DE +TGLD
Sbjct: 190 DPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 8e-09
Identities = 59/253 (23%), Positives = 95/253 (37%), Gaps = 52/253 (20%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+LK V V+ + ++GP G+GK+TL+ + G L D SG++ G +++
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEA 70
Query: 245 ------RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
R + Q +TV E + F L E +R +
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAF------------PLREHTRL-------SEE 111
Query: 299 EID--AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
EI K AV GL D + +SGG KKRV
Sbjct: 112 EIREIVLEKLEAV----------------GLRGAEDLYPAE-----LSGGMKKRVALARA 150
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
L +L DE + GLD + I ++ + L +T I+ + + D I +
Sbjct: 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHD-LDTAFAIADRIAV 209
Query: 417 LSEGQIVYQGPRD 429
L +G+IV +G +
Sbjct: 210 LYDGKIVAEGTPE 222
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 9e-09
Identities = 67/255 (26%), Positives = 101/255 (39%), Gaps = 59/255 (23%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
IL+ VS V +T +LG G GKTTL+ L G L SG I G ++ + P
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHE 71
Query: 245 ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI- 300
AY+ Q +TV E L G LA L RR + K EI
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENLL-------TG-----LAALPRRSR----KIPDEIY 115
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM--RRG--ISGGQKKRVTTGEM 356
+ F VLK EM RRG +SGGQ++++
Sbjct: 116 ELFP----------------VLK--------------EMLGRRGGDLSGGQQQQLAIARA 145
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
LV +L +DE + G+ S I + ++++ + I+ + Q +L D +
Sbjct: 146 LVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMA-ILLVEQYLDFARELADRYYV 204
Query: 417 LSEGQIVYQGPRDNV 431
+ G++V G D +
Sbjct: 205 MERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 9e-09
Identities = 52/269 (19%), Positives = 104/269 (38%), Gaps = 51/269 (18%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-Q 244
+L D+S ++ + L+G G GKTTL+ A+AG + +G+I +L P +
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPHK 78
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
R A + Q+ + V + + F G+ + A+++ R A
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAF-----GLRAQKMPKADIAERVADA------------ 121
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
LK++GL + +SGG ++R+ + +VL
Sbjct: 122 -----------------LKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDVL 159
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424
+DE + LD++ + + + + L I+ + + L D ++ +G++
Sbjct: 160 LLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAA 219
Query: 425 QG-PRDNVLEFFEHMGFKCPERKGVADFL 452
G P+ ++ P A+FL
Sbjct: 220 HGEPQ----ALYDA-----PADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-08
Identities = 63/247 (25%), Positives = 108/247 (43%), Gaps = 39/247 (15%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL ++S +KP + ++G G+GK+TL KL + +VP+
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTL-----TKLIQRF---------------YVPEN 56
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
+ HDL + + R +GV + +L S R+ A P ++ ++
Sbjct: 57 GRVLVDGHDLALADPA------WLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIE 110
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
A +AG D++ + L DT+VG E G+SGGQ++R+ L+ +L
Sbjct: 111 AAKLAGAH-----DFISE---LPEGYDTIVG-EQGAGLSGGQRQRIAIARALIHNPRILI 161
Query: 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425
DE ++ LD + I + + + V +I L T D II++ +G+IV Q
Sbjct: 162 FDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLS----TVKNADRIIVMEKGRIVEQ 217
Query: 426 GPRDNVL 432
G D +L
Sbjct: 218 GSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 1e-08
Identities = 72/250 (28%), Positives = 109/250 (43%), Gaps = 45/250 (18%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL D+S +K + T ++G G+GK+TL L G SG+I G L +
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKD----- 540
Query: 246 TCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
I +H L +E FSG L LL G K + D
Sbjct: 541 ----IDRHTLRQFINYLPQEPYIFSGSILE-----NLLL---------GAKENVSQDEIW 582
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
A +A + D LG T + +E ISGGQK+R+ L+ + VL
Sbjct: 583 AACEIA----EIKDDIENMPLGYQ----TELSEE-GSSISGGQKQRIALARALLTDSKVL 633
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMI-VA-LLQPAPETYDLFDDIILLSEGQI 422
+DE ++ LD+ T +I + ++++ D T+I VA L A ++ D II+L G+I
Sbjct: 634 ILDESTSNLDTITEKKI---VNNLLNLQDKTIIFVAHRLSVAKQS----DKIIVLDHGKI 686
Query: 423 VYQGPRDNVL 432
+ QG D +L
Sbjct: 687 IEQGSHDELL 696
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 63/262 (24%), Positives = 109/262 (41%), Gaps = 56/262 (21%)
Query: 173 LLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT 232
L L K R V LK +S ++ + +GP GAGKTT + L+G L SG++
Sbjct: 23 LKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVR 79
Query: 233 YCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 291
G VP +R ++ + + G+ + L + L V + LLA +
Sbjct: 80 VAG-----LVPWKRRKKFLRRIGVVFGQ---KTQLWWD---LPVIDSFYLLAAIYD---- 124
Query: 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRV 351
+ P F K + D + ++L L+ DT V R +S GQ+ R
Sbjct: 125 --LPP----ARFKKRL-----------DELSELLDLEELLDTPV-----RQLSLGQRMRA 162
Query: 352 TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411
L+ +L++DE + GLD I FLK+ T+++ ++ +
Sbjct: 163 EIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLT-------SHYM- 214
Query: 412 DDI-------ILLSEGQIVYQG 426
DI +++ +G+++Y G
Sbjct: 215 KDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 65/274 (23%), Positives = 120/274 (43%), Gaps = 66/274 (24%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ-R 245
LK+VS V+ ++LGP G+GK+ L+ +AG + D SGKI G ++ P+ R
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
+Y+ Q+ MTV + + + + + +K EI+ +
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLK-------------KRKVDK-------KEIERKVL 111
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
+A ++LG+D + + +SGG+++RV LV +L
Sbjct: 112 EIA--------------EMLGID-----HLLNRKPETLSGGEQQRVAIARALVVNPKILL 152
Query: 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE------ 419
+DE + LD T ++ + LK++ VT++ T+D F++ L++
Sbjct: 153 LDEPFSALDVRTKEKLREELKKIRKEFGVTVLHV-------THD-FEEAWALADKVAIML 204
Query: 420 -GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
G+++ G + V FK P+ + VA+FL
Sbjct: 205 NGKLIQVGKPEEV--------FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 50/211 (23%), Positives = 81/211 (38%), Gaps = 46/211 (21%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----GKDLRASGKITYCGHELN 239
+LK ++ + + LLG GAGK+TL+L L G L G L + Y L
Sbjct: 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLL 64
Query: 240 EFVPQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
E ++ + Q D V + + F LG+ AE+ RR ++A
Sbjct: 65 ER--RQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSE-----AEVERRVREA------ 111
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
+ AV +G + +SGG+KKRV +
Sbjct: 112 -----LTAVGASGLR-----------------------ERPTHCLSGGEKKRVAIAGAVA 143
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMV 389
+VL +DE + GLD + Q+ L+++
Sbjct: 144 MRPDVLLLDEPTAGLDPAGREQMLAILRRLR 174
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 60/253 (23%), Positives = 101/253 (39%), Gaps = 55/253 (21%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
+ + LK+ + + +LG G+GK+TL+ LAG G IT G E+
Sbjct: 349 QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASL 405
Query: 242 VPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
Q T + ++Q +H T+R+ L LA
Sbjct: 406 DEQALRETISVLTQ-RVHLFSGTLRDNL--------------RLANP------------- 437
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
DA + + A Q+ L + +T +G E R +SGG+++R+ L+
Sbjct: 438 --DASDEELWAALQQVGL-EKL---LESAPDGLNTWLG-EGGRRLSGGERRRLALARALL 490
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-----FDD 413
A + +DE + GLD T Q+ L + H T+++ T+ L D
Sbjct: 491 HDAPLWLLDEPTEGLDPITERQVLALLFE--HAEGKTLLMV-------THRLRGLERMDR 541
Query: 414 IILLSEGQIVYQG 426
II+L G+I+ +G
Sbjct: 542 IIVLDNGKIIEEG 554
|
Length = 573 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 70/272 (25%), Positives = 116/272 (42%), Gaps = 48/272 (17%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-VP 243
++L D+S + +M LLGP G+GKTTL+ +A G + + SG I + G +++
Sbjct: 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIA---GLEHQTSGHIRFHGTDVSRLHAR 72
Query: 244 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAF 303
R ++ QH MTV + + F L L RRE+ P A
Sbjct: 73 DRKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRER-------PNAAAI 113
Query: 304 MKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
V T L L++ + D +SGGQK+RV L +
Sbjct: 114 KAKV------TQL----------LEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQI 157
Query: 364 LYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423
L +DE LD+ ++ ++L+Q+ L T V + E ++ D ++++S+G I
Sbjct: 158 LLLDEPFGALDAQVRKELRRWLRQLHEELKFTS-VFVTHDQEEAMEVADRVVVMSQGNIE 216
Query: 424 YQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455
G D V ++ P + V +F+ EV
Sbjct: 217 QAGTPDQV--------WREPATRFVLEFMGEV 240
|
Length = 353 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 13/90 (14%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+S GQKKRV +LV VL +DE + GLD +I K L +M L +T+I+A
Sbjct: 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA--- 198
Query: 403 PAPETYDL------FDDIILLSEGQIVYQG 426
T+D+ D++ ++ EG+++ QG
Sbjct: 199 ----THDIDIVPLYCDNVFVMKEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 3e-08
Identities = 62/230 (26%), Positives = 103/230 (44%), Gaps = 50/230 (21%)
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ---RTCAYISQH-DLHH 257
L+GP GAGKT+L+ AL G L + S KI G EL E P+ + +++ Q+ L H
Sbjct: 381 LVGPSGAGKTSLLNALLGFL--PYQGSLKIN--GIELRELDPESWRKHLSWVGQNPQLPH 436
Query: 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLV 317
G T+R+ + LL PD + +A+ A V
Sbjct: 437 G--TLRDNV--------------LLG-----------NPDASDEQLQQALENAW-----V 464
Query: 318 TDYVLKI-LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSS 376
++++ + GL DT +GD+ G+S GQ +R+ L+ +L +DE + LD+
Sbjct: 465 SEFLPLLPQGL----DTPIGDQA-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH 519
Query: 377 TTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
+ + + L M+ L+ + +D I ++ +GQIV QG
Sbjct: 520 SEQLVMQALNAASRRQTTLMVTHQLEDLAQ----WDQIWVMQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 37/195 (18%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA-SGKITYCGHELNEFVP 243
ILK V+ VK + ++GP G+GK+TL +AG SG I + G +L E P
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH--PSYEVTSGTILFKGQDLLELEP 71
Query: 244 Q---RTCAYIS-QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
R +++ Q+ ++ E L R L A RR + +
Sbjct: 72 DERARAGLFLAFQYPEEIPGVSNLEFL-----------RSALNA---RRSARG----EEP 113
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
+D L+ L +LG+D + + + G SGG+KKR +M +
Sbjct: 114 LDLL--------DFLKLLKA-KLALLGMD---EEFLNRSVNEGFSGGEKKRNEILQMALL 161
Query: 360 TANVLYMDEISTGLD 374
+ +DEI +GLD
Sbjct: 162 EPKLAILDEIDSGLD 176
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 4e-08
Identities = 54/196 (27%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG---HELNEF 241
+L VS + P +LGP G+GK+TL+ LAG L G++T G L++
Sbjct: 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQD 405
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
+R + +Q D H + TVRE L R T EL A L R G+
Sbjct: 406 EVRRRVSVCAQ-DAHLFDTTVRENLRL-AR--PDATDEELWAALER----VGLADWLR-- 455
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
L DT++G E +SGG+++R+ L+ A
Sbjct: 456 ------------------------ALPDGLDTVLG-EGGARLSGGERQRLALARALLADA 490
Query: 362 NVLYMDEISTGLDSST 377
+L +DE + LD+ T
Sbjct: 491 PILLLDEPTEHLDAET 506
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 71/285 (24%), Positives = 113/285 (39%), Gaps = 77/285 (27%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
+ D+S +K LLGP G GKTTL+ +AG SG+I G ++ +
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITD- 71
Query: 242 VP--QRTCAYISQ------HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
VP +R + Q H MTV E V + L K
Sbjct: 72 VPPEKRPIGMVFQSYALFPH------MTVEEN---------VA--FGL--------KVRK 106
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353
EI A ++ L+++GL+ AD +SGGQ++RV
Sbjct: 107 KLKKAEIKARVEE--------------ALELVGLEGFADRKPHQ-----LSGGQQQRVAL 147
Query: 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD---- 409
LV VL +DE + LD+ Q+ K LK++ L +T + T+D
Sbjct: 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYV-------THDQEEA 200
Query: 410 --LFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+ D I ++++G+I G + + ++ P + VADF+
Sbjct: 201 LAMSDRIAVMNDGRIEQVGTPEEI--------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 7e-08
Identities = 56/235 (23%), Positives = 89/235 (37%), Gaps = 62/235 (26%)
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----------FVPQRTCAYIS 251
LGP GAGKTT + L L SG G+++ VPQ
Sbjct: 24 FLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDE- 79
Query: 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAG 311
++T RE L+ GR G L + E + +
Sbjct: 80 -------DLTGRENLEMMGRLYG----------LPKDEAEERAEE--------------- 107
Query: 312 QETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST 371
+L++ L AD VG SGG ++R+ L+ +VL++DE +T
Sbjct: 108 ---------LLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153
Query: 372 GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
GLD T I +++ + VT+++ E L D I ++ G+I+ +G
Sbjct: 154 GLDPRTRRAIWDYIRALKE-EGVTILLT-THYMEEADKLCDRIAIIDHGRIIAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 8e-08
Identities = 44/192 (22%), Positives = 66/192 (34%), Gaps = 47/192 (24%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--V 242
+ D+S + + GP GAGKTTL+ LAG L D +G++ + G +
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRES 72
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+ Y+ E+T E L F R G G I
Sbjct: 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSG-------------------NAATIWE 113
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
+ V +AG E D +S GQ++RV + + A
Sbjct: 114 ALAQVGLAGLE-----------------------DLPVGQLSAGQQRRVALARLWLSPAP 150
Query: 363 VLYMDEISTGLD 374
+ +DE T LD
Sbjct: 151 LWILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 1e-07
Identities = 64/270 (23%), Positives = 109/270 (40%), Gaps = 68/270 (25%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASGKITY 233
PS+ V ILK +S + P + L+G G GK+T++ L R SG+I
Sbjct: 11 PSRP-DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLL-------ERFYDPTSGEILL 62
Query: 234 CGHELNEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 290
G ++ + + +SQ + + T+ E + + G E+ K
Sbjct: 63 DGVDIRDLNLRWLRSQIGLVSQ-EPVLFDGTIAENIRY-------GKPDATDEEVEEAAK 114
Query: 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG--ISGGQK 348
+A I F I+ L DT+VG+ RG +SGGQK
Sbjct: 115 KA------NIHDF--------------------IMSLPDGYDTLVGE---RGSQLSGGQK 145
Query: 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV-----ALLQP 403
+R+ L+ +L +DE ++ LD+ + + + L + + T IV + ++
Sbjct: 146 QRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRA--MKGRTTIVIAHRLSTIRN 203
Query: 404 APETYDLFDDIILLSEGQIVYQGPRDNVLE 433
A D I +L GQ+V QG D ++
Sbjct: 204 A-------DLIAVLQNGQVVEQGTHDELMA 226
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 62/236 (26%), Positives = 94/236 (39%), Gaps = 49/236 (20%)
Query: 202 LLGPPGAGKTTLM---LALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHG 258
LLGP GAGKTTL+ L L ++ +G G +VPQR H+
Sbjct: 11 LLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR-------HEFAWD 63
Query: 259 -EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLV 317
++V T+ SGR +G RR A AV A
Sbjct: 64 FPISVAHTV-MSGRTGHIG--------WLRRPCVAD----------FAAVRDA------- 97
Query: 318 TDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSST 377
L+ +GL AD VG+ +SGGQ++RV L +VL +DE TGLD T
Sbjct: 98 ----LRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT 148
Query: 378 TFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433
+ + ++ T I+ + D ++LL+ G+++ G + +
Sbjct: 149 QELLTELFIELAG--AGTAILMTTHDLAQAMATCDRVVLLN-GRVIADGTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 64/277 (23%), Positives = 105/277 (37%), Gaps = 74/277 (26%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
V LKDVS V + ++G GAGK+TL+ + G + SG + G +
Sbjct: 12 GDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL---ERPTSGSVLVDGTD 68
Query: 238 LNEFVP------QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 291
L +R I QH + LL+ + E
Sbjct: 69 LTLLSGKELRKARRRIGMIFQH-------------------------FNLLSSRTVFENV 103
Query: 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG-----ISGG 346
A + +AG + + + VL++L L VG E + +SGG
Sbjct: 104 A------------LPLEIAGVPKAEIEERVLELLEL-------VGLEDKADAYPAQLSGG 144
Query: 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406
QK+RV L VL DE ++ LD TT I L+ + L +T+++
Sbjct: 145 QKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLI------- 197
Query: 407 TY------DLFDDIILLSEGQIVYQGPRDNVLEFFEH 437
T+ + D + ++ +G++V +G V E F +
Sbjct: 198 THEMEVVKRICDRVAVMEKGEVVEEGT---VEEVFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 59/272 (21%), Positives = 95/272 (34%), Gaps = 60/272 (22%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
K + L +VS ++ ++G G+GK+TL LAG SG I G
Sbjct: 14 GGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKP 70
Query: 238 LNEFVPQRTCA----YISQHDLH--HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 291
L + + Q + TV L R G+ + +AEL Q
Sbjct: 71 LAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELL---DQ 127
Query: 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRV 351
G+ P S + ++ SGGQ++R+
Sbjct: 128 VGLPP------------------SFLDRRPHEL-------------------SGGQRQRI 150
Query: 352 TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV-----ALLQPAPE 406
L+ +L +DE ++ LD S QI L ++ +T + AL+
Sbjct: 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALV----- 205
Query: 407 TYDLFDDIILLSEGQIVYQGPRDNVLEFFEHM 438
+ D I ++ GQIV GP + +L H
Sbjct: 206 -EHMCDRIAVMDNGQIVEIGPTEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 65/251 (25%), Positives = 96/251 (38%), Gaps = 49/251 (19%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
V LK V+ V P + LLG GAGK+TLM L+G G IT N+
Sbjct: 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP---TKGTITINNINYNKLDH 74
Query: 244 ----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
Q I Q E+TV E L + GR L T+ K G+
Sbjct: 75 KLAAQLGIGIIYQELSVIDELTVLENL-YIGRHL---TK-----------KVCGV---NI 116
Query: 300 ID-AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
ID M+ A +L +GL + D V + +S K+ + + L+
Sbjct: 117 IDWREMRVRA----------AMMLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLM 161
Query: 359 GTANVLYMDEISTGLDSSTT---FQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415
A V+ MDE ++ L + F I L++ + T IV + E + D
Sbjct: 162 LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-----EGTAIVYISHKLAEIRRICDRYT 216
Query: 416 LLSEGQIVYQG 426
++ +G V G
Sbjct: 217 VMKDGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 57/222 (25%), Positives = 91/222 (40%), Gaps = 45/222 (20%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
V L DVS ++ L GP GAGKTTL+ KL G
Sbjct: 13 GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLL-----KL-----------LYGALT--- 53
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR-YELLAELSRREKQAGIKPDPEI 300
P R I+ D++ + R+ L R +GV + + LL + + E A
Sbjct: 54 -PSRGQVRIAGEDVNR--LRGRQ-LPLLRRRIGVVFQDFRLLPDRTVYENVA-------- 101
Query: 301 DAFMKAVAVAGQETSLVTDYV---LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
+ V G++ + V L+ +GL+ AD +SGG+++RV +
Sbjct: 102 ----LPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAI 152
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA 399
V + +L DE + LD + +I LK+ ++ T+IVA
Sbjct: 153 VNSPPLLLADEPTGNLDPDLSERILDLLKR-LNKRGTTVIVA 193
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 3e-07
Identities = 52/191 (27%), Positives = 76/191 (39%), Gaps = 23/191 (12%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+L++VS + P L+G GAGK+TL+ LAG+L D SG++T
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKGL------- 66
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
Y+SQ E TV + + G G ELLAEL D +
Sbjct: 67 -RVGYLSQEPPLDPEKTVLDYV-----IEGFGELRELLAELEEAYALLADPDDELLAELE 120
Query: 305 KAVAVAGQETS-LVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
+ T + L LG D V +SGG ++RV L+ ++
Sbjct: 121 ALLEELDGWTLEARAEEALLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEPDL 174
Query: 364 LYMDEISTGLD 374
L +DE + LD
Sbjct: 175 LLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 3e-07
Identities = 55/262 (20%), Positives = 110/262 (41%), Gaps = 67/262 (25%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASGKITYCGHELNEF 241
+L+D+S + L+GP G+GK+TL+ + R SG+I GH++ ++
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIP-------RFYDVDSGRILIDGHDVRDY 69
Query: 242 VPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
R +SQ + F+ + E A +P
Sbjct: 70 TLASLRRQIGLVSQ-----------DVFLFND---------------TVAENIAYGRPGA 103
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTGEM 356
+ +A + ++ I+ L DT++G+ RG+ SGGQ++R+
Sbjct: 104 TREEVEEAA-----RAANAHEF---IMELPEGYDTVIGE---RGVKLSGGQRQRIAIARA 152
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV-----ALLQPAPETYDLF 411
L+ +L +DE ++ LD+ + + L++++ + T V + ++ A
Sbjct: 153 LLKDPPILILDEATSALDTESERLVQAALERLMK--NRTTFVIAHRLSTIENA------- 203
Query: 412 DDIILLSEGQIVYQGPRDNVLE 433
D I++L +G+IV +G + +L
Sbjct: 204 DRIVVLEDGKIVERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 56/255 (21%), Positives = 105/255 (41%), Gaps = 44/255 (17%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
R L +S +++P L+G G+GK+TL+ + D SG+I GH+L ++
Sbjct: 343 RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADY 399
Query: 242 VPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
R A +SQ D+ T+ + Y + R E
Sbjct: 400 TLASLRRQVALVSQ-DVVLFNDTIANNI-----------AYGRTEQADRAE--------- 438
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
++ A V L + DT +G+ +SGGQ++R+ L+
Sbjct: 439 -----IERALAAAYAQDFVD-------KLPLGLDTPIGENGVL-LSGGQRQRLAIARALL 485
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
A +L +DE ++ LD+ + + L++++ +I L T + D I+++
Sbjct: 486 KDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLS----TIEKADRIVVMD 541
Query: 419 EGQIVYQGPRDNVLE 433
+G+IV +G + +L
Sbjct: 542 DGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 64/274 (23%), Positives = 102/274 (37%), Gaps = 84/274 (30%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
K++ + ++S V + + LLGP GAGK+TL+ + G L SG+I + GH
Sbjct: 11 GKQTA--VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPW- 64
Query: 240 EFVPQRTCAYISQHDLH-----------HGEMTVRETLDFSGRCLGVGTRYELLAELSRR 288
++ DLH + +T RE L LG+
Sbjct: 65 -----------TRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGL------------- 100
Query: 289 EKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQK 348
PD ID VL I+ L S G K
Sbjct: 101 -------PDSRIDE------------------VLNIVDLTNTGKKKAKQ-----FSLGMK 130
Query: 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQ----ICKFLKQMVHILDVTMIVALLQPA 404
+R+ L+ +L +DE + GLD + I F +Q + ++ + I++
Sbjct: 131 QRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS----- 185
Query: 405 PETYDLFDDIILLSEGQIVYQG---PRDNVLEFF 435
E L D I ++SEG + YQG +N+ + F
Sbjct: 186 -EVQQLADHIGIISEGVLGYQGKINKSENLEKLF 218
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 4e-07
Identities = 50/222 (22%), Positives = 88/222 (39%), Gaps = 55/222 (24%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
L ++ + L+GP GAGK+TL+ + ++L SG I G ++++ R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLI---YKEELPTSGTIRVNGQDVSDL-RGRA 72
Query: 247 CAYISQH------D---LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
Y+ + D L V E + F+ GV R E+ +R A
Sbjct: 73 IPYLRRKIGVVFQDFRLLPD--RNVYENVAFALEVTGVPPR-----EIRKRVPAA----- 120
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
L+++GL + +SGG+++RV +
Sbjct: 121 ------------------------LELVGLSHKHRALPA-----ELSGGEQQRVAIARAI 151
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA 399
V + +L DE + LD TT++I LK+ ++ T++VA
Sbjct: 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 68/300 (22%), Positives = 113/300 (37%), Gaps = 39/300 (13%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR-ASGKITY-------CG 235
+LK++S ++ + +LG GAGK+ LM L G SG+I Y CG
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGM--DQYEPTSGRIIYHVALCEKCG 70
Query: 236 H-ELNEFV--PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA 292
+ E V P C G E +DF + R + + A
Sbjct: 71 YVERPSKVGEPCPVC----------GGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA 120
Query: 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR-----RGISGGQ 347
D +D ++A+ G E + ++ MV R R +SGG+
Sbjct: 121 LYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLI-------EMVQLSHRITHIARDLSGGE 173
Query: 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407
K+RV L + DE + LD T + L++ V ++M++ PE
Sbjct: 174 KQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT--SHWPEV 231
Query: 408 Y-DLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWF 466
DL D I L G+I +G D V+ F G E++ + + + ++ + +
Sbjct: 232 IEDLSDKAIWLENGEIKEEGTPDEVVAVFME-GVSEVEKECEVEVGEPIIKVRNVSKRYI 290
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 5e-07
Identities = 51/217 (23%), Positives = 86/217 (39%), Gaps = 49/217 (22%)
Query: 176 LVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG 235
V + + ILK V +VK ++GP G+GK+TL+ LA G D +SG++ G
Sbjct: 15 TVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLA---GLDDPSSGEVRLLG 71
Query: 236 HELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG-VGTRYELLAELSRREKQA-- 292
L+ ++ R +G V + L+ L+ E A
Sbjct: 72 QPLH-------------------KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALP 112
Query: 293 -GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR---RGISGGQK 348
++ + D+ A A +L+ +GL G + +SGG++
Sbjct: 113 LELRGESSADSRAGAKA------------LLEAVGL--------GKRLTHYPAQLSGGEQ 152
Query: 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFL 385
+RV G +VL+ DE + LD +T +I L
Sbjct: 153 QRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
|
Length = 228 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 5e-07
Identities = 53/268 (19%), Positives = 100/268 (37%), Gaps = 79/268 (29%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG--KLGKDLRASGKITYCGHELNE-- 240
LKD+S + +T L+GP G GK+TL+ L L G++ G ++ +
Sbjct: 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLD 73
Query: 241 -----------FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRRE 289
V Q+ + ++ + + G+
Sbjct: 74 VDVLELRRRVGMVFQKPNPF---------PGSIYDNVA-----YGL-------------- 105
Query: 290 KQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR-----GIS 344
+ GIK E+D ++ L+ L DE++ G+S
Sbjct: 106 RLHGIKLKEELDERVEE--------------ALRKAALW--------DEVKDRLHALGLS 143
Query: 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA---LL 401
GGQ++R+ L VL +DE ++ LD +T +I + + ++ + T+++ +
Sbjct: 144 GGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--EYTIVIVTHNMQ 201
Query: 402 QPAPETYDLFDDIILLSEGQIVYQGPRD 429
Q A + D L G++V GP +
Sbjct: 202 QAA----RVADRTAFLLNGRLVEFGPTE 225
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 6e-07
Identities = 59/268 (22%), Positives = 110/268 (41%), Gaps = 63/268 (23%)
Query: 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY-----CGHEL---- 238
+DVS + P + ++G G+GK+TL+ LAG+L D G TY EL
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLS 76
Query: 239 ---NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIK 295
+ + ++ Q+ M V + R + +G R+
Sbjct: 77 EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH---------------- 120
Query: 296 PDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGE 355
+ A A D++ ++ +I + D++ R SGG ++R+
Sbjct: 121 -------YGNIRATAQ-------DWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIAR 161
Query: 356 MLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD------ 409
LV +++MDE + GLD S ++ L+ +V L + +I+ T+D
Sbjct: 162 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIV-------THDLGVARL 214
Query: 410 LFDDIILLSEGQIVYQGPRDNVLEFFEH 437
L ++++ +G++V G D VL+ +H
Sbjct: 215 LAQRLLVMQQGRVVESGLTDQVLDDPQH 242
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 6e-07
Identities = 63/256 (24%), Positives = 92/256 (35%), Gaps = 54/256 (21%)
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ-RTCAYISQHDLHHGEM 260
LLGP G GKTTL+ LAG D SG I G ++ P R + Q M
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY 320
TV E + F + V P EI + + ++
Sbjct: 58 TVEENVAFGLKMRKV--------------------PRAEIKPRVLEAL----RLVQLEEF 93
Query: 321 VLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQ 380
D +SGGQ++RV LV +L +DE + LD Q
Sbjct: 94 ---------------ADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQ 138
Query: 381 ICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG-PRDNVLEFFEHMG 439
+ LK + L +T + + E + D I ++ +G+I G P E +E
Sbjct: 139 MQLELKTIQEQLGITFVF-VTHDQEEAMTMSDRIAIMRKGKIAQIGTPE----EIYEE-- 191
Query: 440 FKCPERKGVADFLQEV 455
P VA F+ E+
Sbjct: 192 ---PANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 7e-07
Identities = 58/248 (23%), Positives = 102/248 (41%), Gaps = 51/248 (20%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
V L D+S V+ + LLGP GAGKTT + + G + D SG++ + G L +
Sbjct: 11 GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPL-DI 66
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
+ Y+ + + +M V + L + + L L + E + I
Sbjct: 67 AARNRIGYLPEERGLYPKMKVIDQLVYLAQ----------LKGLKKEEARRRI------- 109
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
D L+ L L A+ V +E+ S G +++V ++
Sbjct: 110 -----------------DEWLERLELSEYANKRV-EEL----SKGNQQKVQFIAAVIHDP 147
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHIL---DVTMIVALLQPAPETYDLFDDIILLS 418
+L +DE +GLD + LK ++ L T+I++ Q +L D ++LL+
Sbjct: 148 ELLILDEPFSGLDPVNV----ELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLN 202
Query: 419 EGQIVYQG 426
+G+ V G
Sbjct: 203 KGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 7e-07
Identities = 60/249 (24%), Positives = 96/249 (38%), Gaps = 45/249 (18%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH-----ELN 239
+IL D+S V P ++GP GAGKTTL+ L G+ +SG +T G E
Sbjct: 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP---SSGDVTLLGRRFGKGETI 101
Query: 240 EFVPQRTCAYIS--QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ ++ +S H+ TVR+ + SG Y+ +
Sbjct: 102 FEL-RKRIGLVSSELHERFRVRETVRDVV-LSGF-FASIGIYQEDLTAEDLAAAQWL--- 155
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
L++LG AD G +S G+++RV L
Sbjct: 156 ------------------------LELLGAKHLADRPFGS-----LSQGEQRRVLIARAL 186
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417
V +L +DE + GLD Q+ L+++ ++ + A E F +LL
Sbjct: 187 VKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLL 246
Query: 418 SEGQIVYQG 426
EG++V QG
Sbjct: 247 KEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 7e-07
Identities = 62/266 (23%), Positives = 112/266 (42%), Gaps = 49/266 (18%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP- 243
ILK V+ VK + ++GP G+GK+TL + G ++ G+I + G ++ E P
Sbjct: 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV-TEGEILFDGEDILELSPD 76
Query: 244 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAF 303
+R A I + + ++ GV L A ++ R GI PE
Sbjct: 77 ERARAGIF--------LAFQYPVEIP----GVTNSDFLRAAMNARRGARGI--LPEFIKE 122
Query: 304 MKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
+K A ++LGLD + + + G SGG+KKR ++L+ +
Sbjct: 123 LKEKA--------------ELLGLD---EEFLERYVNEGFSGGEKKRNEILQLLLLEPKL 165
Query: 364 LYMDEISTGLDSSTTFQICKFLKQM----VHILDVT---MIVALLQPAPETYDLFDDIIL 416
+DE +GLD + + + + +L +T ++ ++P D + +
Sbjct: 166 AILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKP--------DKVHV 217
Query: 417 LSEGQIVYQGPRDNVLEFFEHMGFKC 442
L +G+IV G + + E E G+
Sbjct: 218 LYDGRIVKSGDPE-LAEELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 8e-07
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL-----GKDLRASGKITYCG 235
+R IL+D+S ++P R+T LLG GAGK+TL+ ALAG L + R +G +T G
Sbjct: 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70
Query: 236 HELNEFVPQR 245
L R
Sbjct: 71 EPLAAIDAPR 80
|
Length = 272 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 9e-07
Identities = 51/228 (22%), Positives = 91/228 (39%), Gaps = 48/228 (21%)
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEM 260
++GP GAGK+TL+ +AG + ASG I P QR + + Q + +
Sbjct: 29 IMGPSGAGKSTLLNLIAGFI---EPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHL 85
Query: 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM--KAVAVAGQETSLVT 318
TVR+ + G+ P +++A K V A Q
Sbjct: 86 TVRQNIGL------------------------GLHPGLKLNAEQQEKVVDAAQQ------ 115
Query: 319 DYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTT 378
+G+ D + D + +SGGQ++RV LV +L +DE + LD
Sbjct: 116 ------VGIA---DYL--DRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLR 164
Query: 379 FQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
++ +KQ+ T+++ + + + I ++S+G+I
Sbjct: 165 EEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 41/173 (23%), Positives = 61/173 (35%), Gaps = 48/173 (27%)
Query: 204 GPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE--FVPQRTCAYISQHDLHHGEMT 261
GP G GKTTL+ LAG L D SG++ + G L E P R Y+ E++
Sbjct: 33 GPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89
Query: 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYV 321
E L F A + I+ + AV + G E
Sbjct: 90 ALENLHF-------------WAAIHGGA-------QRTIEDALAAVGLTGFEDLPA---- 125
Query: 322 LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLD 374
+S GQ++R+ + + A + +DE +T LD
Sbjct: 126 -------------------AQLSAGQQRRLALARLWLSRAPLWILDEPTTALD 159
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 67/278 (24%), Positives = 106/278 (38%), Gaps = 66/278 (23%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
L VS +K LLGP G GKTTL+ +AG SG+I G ++
Sbjct: 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLP 68
Query: 243 P-QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
P +R + Q+ +TV E + F R + AE+ R +A
Sbjct: 69 PHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK-----AEIKERVAEA--------- 114
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
L ++ L+ A+ ++ SGGQ++RV LV
Sbjct: 115 --------------------LDLVQLEGYANRKP-SQL----SGGQQQRVAIARALVNEP 149
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD------LFDDII 415
VL +DE LD + LK++ L +T + T+D + D I
Sbjct: 150 KVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFV-------THDQEEALTMSDRIA 202
Query: 416 LLSEGQIVYQG-PRDNVLEFFEHMGFKCPERKGVADFL 452
++++G+I G P + +E P + VADF+
Sbjct: 203 VMNKGKIQQIGTPEE----IYEE-----PANRFVADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 338 EMRRGI------SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHI 391
E+RR I SGGQ++RV L+ ++L +DE ++GLD ++ ++ + L+++
Sbjct: 70 ELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL-AE 128
Query: 392 LDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
T+I+ P D +I+L +G+
Sbjct: 129 EGRTVIIVTHDP-ELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 71/253 (28%), Positives = 108/253 (42%), Gaps = 57/253 (22%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----GKDLRASGKITYCGHELNEFV 242
LK ++ + M LLGP GAGK+TL L G L G+ L I Y L E
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV- 76
Query: 243 PQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
++T + Q+ D TV E + F LG+ E+ +R K+A
Sbjct: 77 -RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE-----EVEKRVKEA--------- 121
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
+KAV + G E ++ +SGGQKKRV +L
Sbjct: 122 --LKAVGMEGFE-----------------------NKPPHHLSGGQKKRVAIAGILAMKP 156
Query: 362 NVLYMDEISTGLDSSTTFQICKFL----KQMVHILDVTMIVALLQPAPETYDLFDDIILL 417
++ +DE ++GLD QI K L K+ + I+ T V L P Y D + ++
Sbjct: 157 EIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL---VP-VYA--DKVYVM 210
Query: 418 SEGQIVYQG-PRD 429
S+G+I+ +G P++
Sbjct: 211 SDGKIIKEGTPKE 223
|
Length = 275 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 3e-06
Identities = 47/201 (23%), Positives = 73/201 (36%), Gaps = 56/201 (27%)
Query: 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC 234
++ +LKD+S + ++GP GAGK+TL+ LAG+LG SG +
Sbjct: 326 NVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVK-V 381
Query: 235 GHELNEFVPQRTCAYISQHDLHHGEMTVRET-LDFSGRCLGVGTRYELLAELSRREKQAG 293
G + Y Q H E+ +T L+ G E+ A L R G
Sbjct: 382 GETVK-------IGYFDQ---HRDELDPDKTVLEELSEGFPDGDEQEVRAYLGR----FG 427
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353
+ K V V +SGG+K R+
Sbjct: 428 FTGED----QEKPVGV---------------------------------LSGGEKARLLL 450
Query: 354 GEMLVGTANVLYMDEISTGLD 374
++L+ N+L +DE + LD
Sbjct: 451 AKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 58/242 (23%), Positives = 98/242 (40%), Gaps = 56/242 (23%)
Query: 200 TLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE-----FVP--QRTCAYISQ 252
T + G G+GKTTL+ +AG D G+I G L + F+P +R Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQ 82
Query: 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQ 312
++VR L RY G+K
Sbjct: 83 EARLFPHLSVRGNL-----------RY-------------GMK------------RARPS 106
Query: 313 ETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372
E + + V+++LG+ + G +SGG+K+RV G L+ + +L MDE
Sbjct: 107 ERRISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAA 161
Query: 373 LDSSTTFQICKFLKQMVHILDVTMIVA--LLQPAPETYDLFDDIILLSEGQIVYQGPRDN 430
LD ++I +L+++ + ++ LQ E L D +++L +G++ GP
Sbjct: 162 LDDPRKYEILPYLERLHAEFGIPILYVSHSLQ---EVLRLADRVVVLEDGRVAAAGPIAE 218
Query: 431 VL 432
V
Sbjct: 219 VW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394
V + + G+SGGQ++RV L +VL +DE ++ LD T ++ LK + L +
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGI 152
Query: 395 TMIVALLQPAPETYDLFDDIILLSEGQ 421
T+++ E L D +++L +G+
Sbjct: 153 TVVLVTHDLD-EAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 4e-06
Identities = 70/257 (27%), Positives = 107/257 (41%), Gaps = 66/257 (25%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
IL DVS ++P ++GP G+GK+TL+ L LG + SG + Y G +L Q
Sbjct: 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLL---LGFETPESGSVFYDGQDLAGLDVQ 523
Query: 245 ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
R + Q+ GR L G+ +E +A A + D +
Sbjct: 524 AVRRQLGVVLQN----------------GR-LMSGSIFENIA------GGAPLTLD---E 557
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTM----VGDEMRRGISGGQKKRVTTGEML 357
A +A +AG DI A M V E +SGGQ++R+ L
Sbjct: 558 A-WEAARMAGLAE-------------DIRAMPMGMHTVISEGGGTLSGGQRQRLLIARAL 603
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV-----ALLQPAPETYDLFD 412
V +L DE ++ LD+ T + + L++ L VT IV + ++ A D
Sbjct: 604 VRKPRILLFDEATSALDNRTQAIVSESLER----LKVTRIVIAHRLSTIRNA-------D 652
Query: 413 DIILLSEGQIVYQGPRD 429
I +L G++V QG D
Sbjct: 653 RIYVLDAGRVVQQGTYD 669
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 58/244 (23%), Positives = 92/244 (37%), Gaps = 56/244 (22%)
Query: 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL-----NEFVP--QRTCAY 249
+T L GP G+GKT+L+ +AG D G+I G L F+P +R Y
Sbjct: 24 RGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGY 80
Query: 250 ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAV 309
+ Q TVR L + S R + F + VA+
Sbjct: 81 VFQDARLFPHYTVRGNLRYG-------------MWKSMRAQ------------FDQLVAL 115
Query: 310 AGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEI 369
G E L D +SGG+K+RV G L+ +L MDE
Sbjct: 116 LGIEHLL--------------------DRYPGTLSGGEKQRVAIGRALLTAPELLLMDEP 155
Query: 370 STGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRD 429
LD +I +L+++ +++ ++ E L D +++L G++ GP +
Sbjct: 156 LASLDLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLE 214
Query: 430 NVLE 433
V
Sbjct: 215 EVWG 218
|
Length = 352 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 64/254 (25%), Positives = 104/254 (40%), Gaps = 50/254 (19%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP- 243
+ + DV+ ++ +L+GP G+GKTT + + + SG+I G ++++ P
Sbjct: 15 KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPV 71
Query: 244 --QRTCAY-ISQHDL--HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+R Y I Q L H +TV E + + LG R +K+A
Sbjct: 72 ELRRKIGYVIQQIGLFPH---LTVAENIATVPKLLGWDKE--------RIKKRA------ 114
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
D +L ++GLD + D +SGGQ++RV L
Sbjct: 115 --------------------DELLDLVGLD---PSEYADRYPHELSGGQQQRVGVARALA 151
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
+L MDE LD T Q+ + +K++ L T IV + E L D I ++
Sbjct: 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKT-IVFVTHDIDEALKLADRIAVMD 210
Query: 419 EGQIVYQGPRDNVL 432
G+IV D +L
Sbjct: 211 AGEIVQYDTPDEIL 224
|
Length = 309 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 58/240 (24%), Positives = 100/240 (41%), Gaps = 44/240 (18%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQ 252
V + +LGP GAGK+TL+ +AG ASG+I G + P +R + + Q
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFE---TPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQ 312
+ +TV + + LG+ +L AE +REK ++A V +AG
Sbjct: 79 ENNLFAHLTVAQNIG-----LGLSPGLKLNAE--QREK---------VEAAAAQVGLAGF 122
Query: 313 ETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372
L + +SGGQ++RV LV +L +DE +
Sbjct: 123 LKRLPGE-----------------------LSGGQRQRVALARCLVREQPILLLDEPFSA 159
Query: 373 LDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432
LD + ++ + Q+ +T+++ P + + D ++ L G+I QG +L
Sbjct: 160 LDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 40/191 (20%), Positives = 68/191 (35%), Gaps = 44/191 (23%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
+V L+D+S V+ L+GP G GK+TL+ +AG SG++ G
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEP 67
Query: 238 LNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ P Y+ Q D +TV + + GV + E +
Sbjct: 68 VTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGV----------PKAEARE----- 110
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
+ ++ V ++G E + +SGG ++RV L
Sbjct: 111 -RAEELLELVGLSGFE-----------------------NAYPHQLSGGMRQRVALARAL 146
Query: 358 VGTANVLYMDE 368
+VL +DE
Sbjct: 147 AVDPDVLLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 1e-05
Identities = 62/254 (24%), Positives = 103/254 (40%), Gaps = 55/254 (21%)
Query: 196 PSR-MTLLLGPPGAGKTTLMLALAGKLGK--DLRASGKITYCGHELNEFVPQRTCAYISQ 252
P+R +T L+GP G+GKTT + L K R SG + G + +
Sbjct: 45 PARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY----------- 93
Query: 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVA---- 308
R+ L+F R VG ++ +P+P + M V
Sbjct: 94 ----------RDVLEFRRR---VGMLFQ--------------RPNPFPMSIMDNVLAGVR 126
Query: 309 ----VAGQETSLVTDYVLKILGL-DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
V +E V L +GL D D + R +SGGQ++ + L V
Sbjct: 127 AHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFR--LSGGQQQLLCLARTLAVNPEV 184
Query: 364 LYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423
L +DE ++ LD +TT +I +F++ + L V ++ L A + D L +G++V
Sbjct: 185 LLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAAR---ISDRAALFFDGRLV 241
Query: 424 YQGPRDNVLEFFEH 437
+GP + + +H
Sbjct: 242 EEGPTEQLFSSPKH 255
|
Length = 276 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 57/261 (21%), Positives = 99/261 (37%), Gaps = 56/261 (21%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
KR +++ VS VK + LLGP GAGKTT + G + D SGKI
Sbjct: 11 GKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKI-------- 57
Query: 240 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRY-----ELLAELSRREKQAGI 294
+ D+ M R L G+G Y + +L+ E
Sbjct: 58 ---------LLDGQDITKLPMHKRARL-------GIG--YLPQEASIFRKLTVEEN---- 95
Query: 295 KPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTG 354
I A ++ ++ +E + +L+ + + +SGG+++RV
Sbjct: 96 -----ILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKAS-----SLSGGERRRVEIA 145
Query: 355 EMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL--QPAPETYDLFD 412
L L +DE G+D I ++++ IL I L+ ET + D
Sbjct: 146 RALATNPKFLLLDEPFAGVDPIAVQDI----QKIIKILKDRGIGVLITDHNVRETLSITD 201
Query: 413 DIILLSEGQIVYQGPRDNVLE 433
++ EG+++ +G + +
Sbjct: 202 RAYIIYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQK+RV L VL DE ++ LD +TT I + LK++ L +T I+ +
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLT-ILLITH 199
Query: 403 PAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEH 437
+ D + ++S G+++ QG V E F H
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQG---TVSEIFSH 231
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 2e-05
Identities = 49/183 (26%), Positives = 71/183 (38%), Gaps = 44/183 (24%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ--RTCAYIS 251
V+P LLG GAGKTT L G SG T G + + + Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTV---TSGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAG 311
Q D +T RE L R GV P EI+
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGV--------------------PAEEIEK--------- 2049
Query: 312 QETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST 371
V ++ ++ LGL + AD + G SGG K++++T L+G ++ +DE +T
Sbjct: 2050 -----VANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
Query: 372 GLD 374
G+D
Sbjct: 2100 GMD 2102
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 58/250 (23%), Positives = 110/250 (44%), Gaps = 43/250 (17%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+LKD++ +KP ++GP GAGKTTL+ L G+I G ++ +
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRD----- 69
Query: 246 TCAYISQHDLHHGEMTV-RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
IS+ L V ++T FSG + E +P+ + +
Sbjct: 70 ----ISRKSLRSMIGVVLQDTFLFSG---------------TIMENIRLGRPNATDEEVI 110
Query: 305 KAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
+A AG D+++K+ G DT++G E +S G+++ + ++ +
Sbjct: 111 EAAKEAG-----AHDFIMKLPNGY----DTVLG-ENGGNLSQGERQLLAIARAMLRDPKI 160
Query: 364 LYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423
L +DE ++ +D+ T I + L++++ +I L T D I++L +G+I+
Sbjct: 161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLS----TIKNADKILVLDDGKII 216
Query: 424 YQGPRDNVLE 433
+G D +L
Sbjct: 217 EEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 50/181 (27%), Positives = 67/181 (37%), Gaps = 45/181 (24%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQH 253
V L+ G GAGKTTL+ LAG L + SG+I G R AY+
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLGHL 90
Query: 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQE 313
+++ E L F L RR KQ M A+A
Sbjct: 91 PGLKADLSTLENLHF------------LCGLHGRRAKQ------------MPGSALA--- 123
Query: 314 TSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGL 373
I+GL DT+V R +S GQKKR+ + + A + +DE L
Sbjct: 124 ----------IVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANL 168
Query: 374 D 374
D
Sbjct: 169 D 169
|
Length = 214 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 63/248 (25%), Positives = 104/248 (41%), Gaps = 41/248 (16%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+L +++ +KP ++GP G+GK+TL KL + L + PQ
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLT-----KLLQRL---------------YTPQH 511
Query: 246 TCAYISQHDLHHGE-MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
+ DL + +R R +GV + +L S R+ A P + +
Sbjct: 512 GQVLVDGVDLAIADPAWLR-------RQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVI 564
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
A +AG D+ I L +T VG E +SGGQ++R+ LVG +L
Sbjct: 565 HAAKLAGAH-----DF---ISELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRIL 615
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424
DE ++ LD + I + ++++ V +I L T D II+L +GQI
Sbjct: 616 IFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLS----TVRACDRIIVLEKGQIAE 671
Query: 425 QGPRDNVL 432
G + +L
Sbjct: 672 SGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 50/209 (23%), Positives = 81/209 (38%), Gaps = 39/209 (18%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE----LNE 240
+ L D+S V P + +L+GP GAGKTTLM + GK G++ + G L E
Sbjct: 19 KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPE 75
Query: 241 F-VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+ + Q +TVRE L+ L + + A L R +
Sbjct: 76 HRIARAGIGRKFQKPTVFENLTVRENLE-----LALNRDKSVFASLFARLRAE------- 123
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
+ D +L +GL D + +S GQK+ + G +L
Sbjct: 124 ------------ERRR--IDELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQ 164
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQM 388
+L +DE G+ + T + + LK +
Sbjct: 165 DPKLLLLDEPVAGMTDAETEKTAELLKSL 193
|
Length = 249 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 44/221 (19%), Positives = 76/221 (34%), Gaps = 58/221 (26%)
Query: 158 TLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLAL 217
L NV+L + S L L +V+ + + L+GP G GK+TL+ +
Sbjct: 4 CLKNVSLRLPGSCL---------------LANVNFTIAKGEIVTLMGPSGCGKSTLLSWM 48
Query: 218 AGKLGKDLRASGKITYCGHELNEFVP--QRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 275
G L +G++ L+ +P QR + Q L ++V + L F+
Sbjct: 49 IGALAGQFSCTGELWLNEQRLDM-LPAAQRQIGILFQDALLFPHLSVGQNLLFA------ 101
Query: 276 GTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335
+ + +A A A + + L
Sbjct: 102 ------------------LPATLKGNARRNAANAALERSGL----------------DGA 127
Query: 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSS 376
+ +SGGQ+ RV L+ L +DE + LD +
Sbjct: 128 FHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 3e-05
Identities = 67/281 (23%), Positives = 109/281 (38%), Gaps = 81/281 (28%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+LK ++ S +T L+G G GK+TL + L+G L G + + G
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQG---------- 62
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAF-- 303
+ LD+S R L L+ R++ A + DPE F
Sbjct: 63 ------------------KPLDYSKRGL-----------LALRQQVATVFQDPEQQIFYT 93
Query: 304 ---------MKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG-----ISGGQKK 349
++ + V E + D L T+V + R +S GQKK
Sbjct: 94 DIDSDIAFSLRNLGVPEAEITRRVDEAL----------TLVDAQHFRHQPIQCLSHGQKK 143
Query: 350 RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV----HILDVTMIVALLQPAP 405
RV LV A L +DE + GLD + Q+ ++++V H++ + + L+
Sbjct: 144 RVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI---- 199
Query: 406 ETYDLFDDIILLSEGQIVYQGPRDNVL---EFFEHMGFKCP 443
Y++ D + +L +GQI+ G V E E G P
Sbjct: 200 --YEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLTQP 238
|
Length = 271 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 4e-05
Identities = 58/266 (21%), Positives = 110/266 (41%), Gaps = 67/266 (25%)
Query: 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG--------HELN 239
+DVS + P + ++G G+GKTTL+ ++G+L D +G +TY + ++
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYTMS 79
Query: 240 E----FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRY--ELLAELSRREKQAG 293
E + + ++ Q+ M V + R + +G R+ + AE ++
Sbjct: 80 EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVE 139
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353
I D ID ++ R SGG ++R+
Sbjct: 140 IDLD-RID------------------------------------DLPRTFSGGMQQRLQI 162
Query: 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF-- 411
LV +++MDE + GLD S ++ L+ +V L + +++ T+DL
Sbjct: 163 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIV-------THDLAVA 215
Query: 412 ----DDIILLSEGQIVYQGPRDNVLE 433
D ++++ +GQ+V G D VL+
Sbjct: 216 RLLADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 4e-05
Identities = 34/139 (24%), Positives = 71/139 (51%), Gaps = 25/139 (17%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQK+RV +L ++ +DE ++ LD + QI K ++++ ++T+I
Sbjct: 144 LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISI--- 200
Query: 403 PAPETYDL-----FDDIILLSEGQIVYQG-PRD--NVLEFFEHMGFKCP---------ER 445
T+D+ D +++L +G+++ QG P + + +E + +G P +
Sbjct: 201 ----THDIDEANMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKE 256
Query: 446 KGVADFLQEVTSKKDQEQY 464
KG++ QE+ +++ QY
Sbjct: 257 KGIS-VPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 4e-05
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 14/127 (11%)
Query: 334 MVG-----DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQM 388
MVG D M +SGGQ++RV L V+ DE+++ LD ++ ++++
Sbjct: 133 MVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRL 192
Query: 389 VHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGV 448
D+TM++ + + D + +G+IV QG D E F P+ +
Sbjct: 193 ASEHDLTMLLVTHEMG-FAREFADRVCFFDKGRIVEQGKPD---EIFRQ-----PKEERT 243
Query: 449 ADFLQEV 455
+FL +V
Sbjct: 244 REFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 53/244 (21%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTT---LMLALAGKLGKDLRASGKITYCGHELNEFV 242
+L+DVS + P +T L+GP G+GK+T L+ G G++ G ++++
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG------GQVLLDGKPISQY- 81
Query: 243 PQRTCAYISQHDLHHGEMTV--RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
+H H ++++ +E + F+ S ++ A
Sbjct: 82 ---------EHKYLHSKVSLVGQEPVLFAR---------------SLQDNIAYGLQSCSF 117
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG--ISGGQKKRVTTGEMLV 358
+ +A A + I L DT VG+ +G +SGGQK+RV L+
Sbjct: 118 ECVKEAAQKAHAHSF--------ISELASGYDTEVGE---KGSQLSGGQKQRVAIARALI 166
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
VL +DE ++ LD+ + Q+ + L V +I L T + D I++L
Sbjct: 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLS----TVERADQILVLD 222
Query: 419 EGQI 422
G+I
Sbjct: 223 GGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 32/162 (19%), Positives = 50/162 (30%), Gaps = 50/162 (30%)
Query: 211 TTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGEMTVRETL 266
+TL+ + G L SG I G + ++ + Q E+TVRE L
Sbjct: 1 STLLKLITGLLQPT---SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326
F R + + + L+ +G
Sbjct: 58 FFGLR--------------------------------------DKEADARAEE-ALERVG 78
Query: 327 LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDE 368
L D + SGGQK+RV L+ +L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 5e-05
Identities = 67/268 (25%), Positives = 107/268 (39%), Gaps = 82/268 (30%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA----SGKITYCGHELNEF 241
+LK +S +K LLG G GK+TL+ L RA G+I G + ++
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT-------RAWDPQQGEILLNGQPIADY 407
Query: 242 -----------VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 290
V QR ++ T+R+ L LLA
Sbjct: 408 SEAALRQAISVVSQRV--HLFSA-------TLRDNL--------------LLA------- 437
Query: 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKR 350
P+ +A ++ + G E L D GL+ +G E R +SGG+++R
Sbjct: 438 ----APNASDEALIEVLQQVGLEKLLEDD-----KGLN----AWLG-EGGRQLSGGEQRR 483
Query: 351 VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV------ALLQPA 404
+ L+ A +L +DE + GLD+ T QI + L + H + T+++ L Q
Sbjct: 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE--HAQNKTVLMITHRLTGLEQ-- 539
Query: 405 PETYDLFDDIILLSEGQIVYQGPRDNVL 432
FD I ++ GQI+ QG +L
Sbjct: 540 ------FDRICVMDNGQIIEQGTHQELL 561
|
Length = 574 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 6e-05
Identities = 47/228 (20%), Positives = 88/228 (38%), Gaps = 44/228 (19%)
Query: 200 TLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHG 258
T ++GP G+GK+TL+ +A G + SG++ G ++ P R + + Q +
Sbjct: 27 TAIVGPSGSGKSTLLNLIA---GFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFA 83
Query: 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVT 318
+TV + + LG+ +L AE R+ + K +
Sbjct: 84 HLTVEQNVG-----LGLSPGLKLTAE--DRQAIEVALARVGLAGLEKRLP---------- 126
Query: 319 DYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTT 378
+SGG+++RV +LV VL +DE LD +
Sbjct: 127 ----------------------GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALR 164
Query: 379 FQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
++ + + +T+++ QP + L ++ L G+I QG
Sbjct: 165 AEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 6e-05
Identities = 64/253 (25%), Positives = 103/253 (40%), Gaps = 65/253 (25%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASGKITYCGHELNEFV 242
L ++ V+P L+GP GAGK+TL L LR SG+I G +L +
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL-------LRFYDPQSGRILLDGVDLRQLD 408
Query: 243 PQ--RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
P R + D +V E + + GR PD
Sbjct: 409 PAELRARMALVPQDPVLFAASVMENIRY-GR------------------------PDAT- 442
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTGEMLV 358
D ++A A A I L DT +G+ RG+ SGGQ++R+ ++
Sbjct: 443 DEEVEAAARAAHAHEF-------ISALPEGYDTYLGE---RGVTLSGGQRQRIAIARAIL 492
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQ-MVHILDVTMIVA----LLQPAPETYDLFDD 413
A +L +DE ++ LD+ + + + L+ M T+I+A + A D
Sbjct: 493 KDAPILLLDEATSALDAESEQLVQQALETLMKG--RTTLIIAHRLATVLKA-------DR 543
Query: 414 IILLSEGQIVYQG 426
I+++ +G+IV QG
Sbjct: 544 IVVMDQGRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 8e-05
Identities = 52/261 (19%), Positives = 98/261 (37%), Gaps = 46/261 (17%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLAL--AGKLGKDLRASGKITYCGHELNE---- 240
+K+V+ V+ + L+GP G GKTT + A+ L R +G+I G ++
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 241 -FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+R + Q M+V + + + G+ R L+ R + A + E
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWD--E 137
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
+ +K A G+SGGQ++R+ L
Sbjct: 138 VKDRLKTPAT--------------------------------GLSGGQQQRLCIARALAV 165
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD-----LFDDI 414
+L MDE ++ LD ++T +I + + + + ++ + A D L D+
Sbjct: 166 EPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDL 225
Query: 415 ILLSEGQIVYQGPRDNVLEFF 435
+ ++ PRD E +
Sbjct: 226 VEHGPTDQLFTNPRDERTEAY 246
|
Length = 252 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 8e-05
Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 56/228 (24%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+IL+ VS + S++T ++GP G GK+T + L + +NE
Sbjct: 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL------------------NRMNEL--- 59
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG-IKPDPEI--- 300
E+ V ++F + + YE L+R +Q + P P +
Sbjct: 60 ------------ESEVRVEGRVEFFNQNI-----YERRVNLNRLRRQVSMVHPKPNLFPM 102
Query: 301 ---DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI-------SGGQKKR 350
D V + G L D +++ D + DE++ I SGGQ++R
Sbjct: 103 SVYDNVAYGVKIVGWRPKLEIDDIVE----SALKDADLWDEIKHKIHKSALDLSGGQQQR 158
Query: 351 VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV 398
+ L VL MDE GLD + ++ ++ + ++TM++
Sbjct: 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVI 206
|
Length = 261 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 8e-05
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE 240
ILK V+ +K + L+GP G+GK+TL + G ++ G+I + G ++ +
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV-TEGEILFKGEDITD 68
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 9e-05
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 332 DTMVGDEMRRG--ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV 389
DT+VG+ RG +SGG+K+RV ++ +L +DE ++ LD+ T +I L+ +
Sbjct: 128 DTIVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS 184
Query: 390 HILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433
+I L T D II+L +G+IV +G + +L
Sbjct: 185 KGRTTIVIAHRLS----TIVNADKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 49/209 (23%)
Query: 173 LLHL--VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGK 230
LL L V +IL ++S ++ L+ GP G GK+TL+ +A + SG
Sbjct: 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGT 63
Query: 231 ITYCGHELNEFVPQR---TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSR 287
+ + G +++ P+ +Y +Q G+ TV + L F +++
Sbjct: 64 LLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFP---------WQI------ 107
Query: 288 REKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347
R +Q PDP F+ + IL +I +SGG+
Sbjct: 108 RNQQ----PDP--AIFLDDLERFALP--------DTILTKNIAE-----------LSGGE 142
Query: 348 KKRVTTGEMLVGTANVLYMDEISTGLDSS 376
K+R++ L VL +DEI++ LD S
Sbjct: 143 KQRISLIRNLQFMPKVLLLDEITSALDES 171
|
Length = 225 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 1e-04
Identities = 60/283 (21%), Positives = 111/283 (39%), Gaps = 63/283 (22%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
R+ +L D++ +K +++T +GP G GK+T + L ++LN+
Sbjct: 93 RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNL------------------NQLNDL 134
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGI--KPDPE 299
+ + H GE+ LG TR + ++ L R + + KP P
Sbjct: 135 IEGTS---------HEGEIYF----------LGTNTRSKKISSLELRTRIGMVFQKPTPF 175
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR-------RGISGGQKKRVT 352
+ VA + + +L+ + + DE++ +SGGQ++R+
Sbjct: 176 EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLC 235
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTTFQICKF---LKQMVHILDVTMIVALLQPAPETYD 409
+ VL MDE ++ LD T +I + LK+ I+ VT +A Q
Sbjct: 236 IARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQ------R 289
Query: 410 LFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+ D+ + +G I G + F P+ K D++
Sbjct: 290 ISDETVFFYQGWIEEAGETKTI--------FIHPKNKRTKDYI 324
|
Length = 329 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG--KLGKDLRASGKITYCGHELNEFVP 243
+LKD+S +KP L+ GP G GK++L ALAG G SG+I E F+P
Sbjct: 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG-----SGRIGMPEGEDLLFLP 70
Query: 244 QR 245
QR
Sbjct: 71 QR 72
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 45/215 (20%), Positives = 79/215 (36%), Gaps = 44/215 (20%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
V +L+D++ V+ +LGP G GK+TL+ +AG SG++ G +
Sbjct: 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTG-- 69
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
P Y+ Q D +TV + + G S+ E +
Sbjct: 70 PGPDIGYVFQEDALLPWLTVLDNVALGLELRGK----------SKAEARE------RAKE 113
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
++ V +AG E D+ +SGG ++RV L
Sbjct: 114 LLELVGLAGFE-----------------------DKYPHQLSGGMRQRVAIARALATRPK 150
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397
+L +DE LD+ T ++ L ++ T++
Sbjct: 151 LLLLDEPFGALDALTREELQDELLRLWEETRKTVL 185
|
Length = 248 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 2e-04
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKD 224
P + L++GPPG+GKTTL ALA +LG
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPP 29
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 60/259 (23%), Positives = 102/259 (39%), Gaps = 55/259 (21%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG---HELN 239
+L V V+ + L+GP GAGKTTL+ A+ G L +G + G L+
Sbjct: 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALS 71
Query: 240 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
R A + Q E VR+ ++ GR R++ E R
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEM-GRTPHRS-RFDTWTETDRA----------A 119
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
++ M+ VA VT +SGG+++RV L
Sbjct: 120 VERAMERTGVAQFADRPVTS-----------------------LSGGERQRVLLARALAQ 156
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL------FDD 413
VL +DE + LD + + + ++++V T + A+ +DL D+
Sbjct: 157 ATPVLLLDEPTASLDINHQVRTLELVRRLVDD-GKTAVAAI-------HDLDLAARYCDE 208
Query: 414 IILLSEGQIVYQGPRDNVL 432
++LL++G++ GP +VL
Sbjct: 209 LVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+L DVS + +T ++GP GAGK+TL+ ++ L KD SG+IT G EL +
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSK 71
Query: 245 ---RTCAYISQHDLHHGEMTVRETLDFSGR 271
+ + + Q + + +TVR+ + F GR
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGF-GR 100
|
Length = 252 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-04
Identities = 72/266 (27%), Positives = 105/266 (39%), Gaps = 78/266 (29%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
V+ L VS V+P + LLG GAGK+TLM L+G D SG+I G + F
Sbjct: 21 VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDG-KPVAF-- 74
Query: 244 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE---LLAELS-------RREKQAG 293
+ R+ L G+ T ++ L+ LS RE
Sbjct: 75 ----------------SSPRDALA-----AGIATVHQELSLVPNLSVAENIFLGREPT-- 111
Query: 294 IKPDPEID-AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT 352
+ ID M+ A +L LGLDI DT+VGD +S Q++ V
Sbjct: 112 -RRFGLIDRKAMRRRARE----------LLARLGLDIDPDTLVGD-----LSIAQRQMVE 155
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTT---FQICKFLKQ----MV---HILDVTMIVALLQ 402
L A VL +DE + L T F + + LK ++ H LD
Sbjct: 156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD--------- 206
Query: 403 PAPETYDLFDDIILLSEGQIVYQGPR 428
E +++ D I +L +G++V P
Sbjct: 207 ---EVFEIADRITVLRDGRVVGTRPT 229
|
Length = 500 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 48/252 (19%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
+ + V DVS K + ++GP GAGKTTL+ L G+I G +
Sbjct: 345 ANSSQGVF---DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGID 398
Query: 238 LNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+N +++ L TV + R + R +
Sbjct: 399 INT---------VTRESLRKSIATVFQDAGLFNRSIRENIRLG--------------REG 435
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
+ +A A D++LK DT+VG+ R +SGG+++R+ +
Sbjct: 436 ATDEEVYEAAKAAA-----AHDFILKRSN---GYDTLVGERGNR-LSGGERQRLAIARAI 486
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD---VTMIVALLQPAPETYDLFDDI 414
+ A +L +DE ++ LD T ++ K + L T I+A DL +
Sbjct: 487 LKNAPILVLDEATSALDVETEARV----KNAIDALRKNRTTFIIAHRLSTVRNADL---V 539
Query: 415 ILLSEGQIVYQG 426
+ L +G+++ +G
Sbjct: 540 LFLDQGRLIEKG 551
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 59/252 (23%), Positives = 105/252 (41%), Gaps = 46/252 (18%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
L+ +S ++ ++GP G+GK+TL + +G SG + G +L
Sbjct: 332 PTLRGISFSLQAGEALAIIGPSGSGKSTLARLI---VGIWPPTSGSVRLDGADLK----- 383
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
Q D RET G+ +G + L + E A + + + +
Sbjct: 384 -------QWD--------RETF---GKHIGYLPQDVELFPGTVAENIARFGENADPEKII 425
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
+A +AG V + IL L DT++G +SGGQ++R+ L G ++
Sbjct: 426 EAAKLAG-----VHEL---ILRLPDGYDTVIGPG-GATLSGGQRQRIALARALYGDPKLV 476
Query: 365 YMDEISTGLDSSTTFQICKFLKQM----VHILDVTMIVALLQPAPETYDLFDDIILLSEG 420
+DE ++ LD + +K + + ++ +T +LL D I++L +G
Sbjct: 477 VLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCV-------DKILVLQDG 529
Query: 421 QIVYQGPRDNVL 432
+I G RD VL
Sbjct: 530 RIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 62/249 (24%), Positives = 104/249 (41%), Gaps = 45/249 (18%)
Query: 200 TLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ---RTCAYISQHDLH 256
T ++GP G GK+TL+ L+ + A G + G + + + R ++Q+
Sbjct: 36 TAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASKEVARRIGLLAQNATT 92
Query: 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSL 316
G++TV+E L RY +R K+ + +A KA+ G T L
Sbjct: 93 PGDITVQE--------LVARGRYPHQPLFTRWRKE-------DEEAVTKAMQATGI-THL 136
Query: 317 VTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSS 376
V DT+ SGGQ++R +L ++ +DE +T LD S
Sbjct: 137 ADQSV----------DTL---------SGGQRQRAWIAMVLAQETAIMLLDEPTTWLDIS 177
Query: 377 TTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG-PRDNVL-EF 434
+ + L ++ T+ A+L + +I L EG+IV QG P++ V E
Sbjct: 178 HQIDLLELLSELNREKGYTL-AAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAEL 236
Query: 435 FEHM-GFKC 442
E + G +C
Sbjct: 237 IERIYGLRC 245
|
Length = 265 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 51/233 (21%), Positives = 99/233 (42%), Gaps = 49/233 (21%)
Query: 174 LHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLAL--AGKLGKDLRASGKI 231
L + +KK++ L VS P+ +T L+GP G+GK+TL+ ++ L ++ +G I
Sbjct: 11 LSVYYNKKKA---LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI 67
Query: 232 TYCGHELNEFVPQRTCAYISQ------HDLHHGEMTVRETLDFSGRCLGVGTRYELLAEL 285
Y GH N + P+ + + + M++ E + + R G+ + L +
Sbjct: 68 VYNGH--NIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAV 125
Query: 286 SRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345
+ K A I + + D D+ +G +SG
Sbjct: 126 EKSLKGASIWDEVK----------------------------DRLHDSALG------LSG 151
Query: 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV 398
GQ++RV +L + ++ +DE ++ LD + +I + L + D TM++
Sbjct: 152 GQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLL 202
|
Length = 252 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
LKD+S VK LLGP G GKTTL+ +A G + + +G I G ++ PQ
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIA---GLERQTAGTIYQGGRDITRLPPQ 74
Query: 245 R 245
+
Sbjct: 75 K 75
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 61/252 (24%), Positives = 106/252 (42%), Gaps = 53/252 (21%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
LK V+ ++ L+G G GK+TL+ ++ G SG + G ++ E P R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLIS---GLAQPTSGGVILEGKQITEPGPDRM 57
Query: 247 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKA 306
+ + L +TVRE + + +L +LS+ E++A
Sbjct: 58 VVFQNYSLLPW--LTVRENIALAVDR--------VLPDLSKSERRA-------------- 93
Query: 307 VAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYM 366
+ + + ++GL AD G +SGG K+RV L VL +
Sbjct: 94 ----------IVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLL 138
Query: 367 DEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY-- 424
DE LD+ T + + L Q+ VT+++ T+D+ D+ +LLS+ ++V
Sbjct: 139 DEPFGALDALTRGNLQEELMQIWEEHRVTVLMV-------THDV-DEALLLSD-RVVMLT 189
Query: 425 QGPRDNVLEFFE 436
GP N+ + E
Sbjct: 190 NGPAANIGQILE 201
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-- 241
+L DVS ++ + LLGP G+GK+TL+ +AG D SG I G +L +
Sbjct: 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLED 69
Query: 242 ---VPQRTCAYISQHDLHHGEMTVRE--TLDFSG 270
+R + Q +TV E L SG
Sbjct: 70 ELPPLRRRIGMVFQDFALFPHLTVLENIALGLSG 103
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQ++R +L + + +DE LD + QI K L+++ L T++V L
Sbjct: 136 LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVL-- 193
Query: 403 PAPETYDL------FDDIILLSEGQIVYQGPRDNVLE 433
+D+ D I+ L G++V QG D +++
Sbjct: 194 -----HDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 38/178 (21%), Positives = 57/178 (32%), Gaps = 50/178 (28%)
Query: 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP--QRTCAYISQHDLH 256
+ GP G+GKTTL+ LAG +G++ G L+ R Y+
Sbjct: 28 ALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSIARGLLYLGHAPGI 84
Query: 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSL 316
++V E L F E LA V + G E
Sbjct: 85 KTTLSVLENLRFWHADHSDEQVEEALAR----------------------VGLNGFE--- 119
Query: 317 VTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLD 374
D + S GQ++RV +L+ + +DE +T LD
Sbjct: 120 -----------DRPVAQL---------SAGQQRRVALARLLLSGRPLWILDEPTTALD 157
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 65/272 (23%), Positives = 105/272 (38%), Gaps = 54/272 (19%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP--- 243
+ +++ + +L+GP G+GKTT M + + SG+I G ++ E P
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVEL 73
Query: 244 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELS-RREKQAGIKPDPEIDA 302
+R Y+ Q MTV E + +LL + ++A
Sbjct: 74 RRKIGYVIQQIGLFPHMTVEEN---------IALVPKLLKWPKEKIRERA---------- 114
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
D +L ++GLD D +SGGQ++RV L
Sbjct: 115 ----------------DELLALVGLD---PAEFADRYPHELSGGQQQRVGVARALAADPP 155
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422
+L MDE LD T Q+ + K++ L T IV + E + L D I ++ G+I
Sbjct: 156 LLLMDEPFGALDPITRDQLQEEFKRLQQELGKT-IVFVTHDIDEAFRLADRIAIMKNGEI 214
Query: 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFLQE 454
V G D +L + P VA+F+
Sbjct: 215 VQVGTPDEIL--------RSPANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 27/189 (14%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL+ ++ V+P + ++GP G+GK+TL LAG+ ++ G + + G +L E P+
Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPED 74
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
GE + + GV ++ L L+ G +P +D F
Sbjct: 75 RA----------GE-GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEP---LDRF-- 118
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
L+ + KI L + D ++ + G SGG+KKR +M V +
Sbjct: 119 ------DFQDLMEE---KIALLKMPED-LLTRSVNVGFSGGEKKRNDILQMAVLEPELCI 168
Query: 366 MDEISTGLD 374
+DE +GLD
Sbjct: 169 LDESDSGLD 177
|
Length = 248 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 61/256 (23%), Positives = 99/256 (38%), Gaps = 68/256 (26%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+ LK +S + T LLGP GAGK+TL+L L G L G++ G E+N
Sbjct: 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLN---GIYLPQRGRVKVMGREVN----A 71
Query: 245 RTCAYISQH--------DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
++ D TV + + F +G+ E+ RR ++A
Sbjct: 72 ENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDK-----DEVERRVEEA---- 122
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
LK + + D+ +S GQKKRV +
Sbjct: 123 -------------------------LKAVRMWDFR-----DKPPYHLSYGQKKRVAIAGV 152
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL------ 410
L +V+ +DE LD + + L ++ H T+IVA T+D+
Sbjct: 153 LAMDPDVIVLDEPMAYLDPRGQETLMEILDRL-HNQGKTVIVA-------THDVDLAAEW 204
Query: 411 FDDIILLSEGQIVYQG 426
D +I+L EG+++ +G
Sbjct: 205 ADQVIVLKEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHI 391
DT + + + R SGG+++R+ +L+ A ++ +DE + GLD T Q+ + +++
Sbjct: 88 DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD 147
Query: 392 LDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
+ I L + D I+ L G+I+ QG
Sbjct: 148 KTLIWITHHLT----GIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 47/195 (24%), Positives = 75/195 (38%), Gaps = 56/195 (28%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
L D+S V P + +++GP GAGKTT+M + GK D G + + G +L
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDL-------- 66
Query: 247 CAYISQHDL-HHG------------EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
+ +H + G +TV E L+ L + + A L R
Sbjct: 67 -TGLPEHQIARAGIGRKFQKPTVFENLTVFENLE-----LALPRDKSVFASLFFRLSAEE 120
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353
I+ VL+ +GL AD + G +S GQK+ +
Sbjct: 121 ---KDRIEE------------------VLETIGLADEADRLAGL-----LSHGQKQWLEI 154
Query: 354 GEMLVGTANVLYMDE 368
G +L+ +L +DE
Sbjct: 155 GMLLMQDPKLLLLDE 169
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 62/254 (24%), Positives = 103/254 (40%), Gaps = 47/254 (18%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
V +LK ++ + P + L+GP G+GK+T+ L G++ G L ++
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQY- 548
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA-GIKPDPEID 301
Y+ + G+ E + FSG S RE A G+ P D
Sbjct: 549 ---DHHYLHRQVALVGQ----EPVLFSG---------------SVRENIAYGLTDTP--D 584
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
+ A A A + D+ I+ DT VG E +SGGQK+R+ LV
Sbjct: 585 EEIMAAAKA----ANAHDF---IMEFPNGYDTEVG-EKGSQLSGGQKQRIAIARALVRKP 636
Query: 362 NVLYMDEISTGLD--SSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419
VL +DE ++ LD Q + +L + ++ ++ A D I++L +
Sbjct: 637 RVLILDEATSALDAECEQLLQESRSRASRTVLL-IAHRLSTVERA-------DQILVLKK 688
Query: 420 GQIVYQGPRDNVLE 433
G +V G ++E
Sbjct: 689 GSVVEMGTHKQLME 702
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 48/208 (23%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
L+D++ ++ + ++LGP G GKTTL+ +AG + G IT G + +
Sbjct: 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGAE 71
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
R + Q++ G + R D + G + LA + + ++
Sbjct: 72 R--GVVFQNE---GLLPWRNVQD----NVAFGLQ---LAGVEKMQRL------------- 106
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR--GISGGQKKRVTTGEMLVGTAN 362
+A Q +LK +GL+ G E R +SGGQ++RV L
Sbjct: 107 ---EIAHQ--------MLKKVGLE-------GAEKRYIWQLSGGQRQRVGIARALAANPQ 148
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVH 390
+L +DE LD+ T Q+ L ++
Sbjct: 149 LLLLDEPFGALDAFTREQMQTLLLKLWQ 176
|
Length = 255 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 4e-04
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
V+ L VS V+ + LLG GAGK+TLM L+G D SG+I G E++
Sbjct: 12 GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVS 65
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQ +++ +L +++ +DE + GLD + Q+ + LK + + I+ +
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSL-QTDENKTIILVSH 204
Query: 403 PAPETYDLFDDIILLSEGQIVYQG-PRD 429
E D++I++ EG IV Q P++
Sbjct: 205 DMNEVARYADEVIVMKEGSIVSQTSPKE 232
|
Length = 286 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 4e-04
Identities = 65/274 (23%), Positives = 116/274 (42%), Gaps = 57/274 (20%)
Query: 165 NMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD 224
M ++ + + + + + L+D S V + L+G G+GK+TL AL G +
Sbjct: 1 MMQQAGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFV--- 57
Query: 225 LRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG----VGTRYE 280
ASGKI+ G + + + AY+ Q E +D+S L + RY
Sbjct: 58 RLASGKISILGQPTRQALQKNLVAYVPQ----------SEEVDWSFPVLVEDVVMMGRYG 107
Query: 281 LLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340
+ L R +K+ D +I VT + ++ ++ +G+
Sbjct: 108 HMGWLRRAKKR-----DRQI----------------VTAALARVDMVEF-RHRQIGE--- 142
Query: 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400
+SGGQKKRV + V+ +DE TG+D T +I L+++ TM+V+
Sbjct: 143 --LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLREL-RDEGKTMLVS- 198
Query: 401 LQPAPETYDL-----FDDIILLSEGQIVYQGPRD 429
T++L F D ++ +G ++ GP +
Sbjct: 199 ------THNLGSVTEFCDYTVMVKGTVLASGPTE 226
|
Length = 272 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 4e-04
Identities = 63/291 (21%), Positives = 110/291 (37%), Gaps = 60/291 (20%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
P+ + R L D+ VK T L+G G+GK+TL+ L G L
Sbjct: 13 PNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP-------------- 58
Query: 238 LNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIK-- 295
++ + G++ V T E+ K+ G+
Sbjct: 59 -------------TEGKVTVGDIVVSST--------------SKQKEIKPVRKKVGVVFQ 91
Query: 296 -PDPEI--DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG------DEMRRGISGG 346
P+ ++ + +K VA Q + + KI + MVG ++ +SGG
Sbjct: 92 FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKL---EMVGLADEFWEKSPFELSGG 148
Query: 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406
Q +RV +L VL +DE + GLD ++ + + + ++V L +
Sbjct: 149 QMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM--DD 206
Query: 407 TYDLFDDIILLSEGQIVYQGPRDNV---LEFFEHMGFKCPERKGVADFLQE 454
D D + LL +G I+ G +V ++F + P+ AD LQ+
Sbjct: 207 VADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 5e-04
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQ++R+ L+ +L +DE ++ LD T I + L+ + T+IV
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVI--- 151
Query: 403 PA--PETYDLFDDIILLSEGQ 421
A T D II+L +G+
Sbjct: 152 -AHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 55/262 (20%), Positives = 96/262 (36%), Gaps = 63/262 (24%)
Query: 201 LLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260
+LLGP GAGK++L+ L ++ SG + G+ + S+
Sbjct: 32 VLLGPSGAGKSSLLRVLNLL---EMPRSGTLNIAGNHFD----------FSKT------P 72
Query: 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY 320
+ + D V +Y L L+ +E I+A + + ++ + +
Sbjct: 73 SDKAIRDLRRNVGMVFQQYNLWPHLTVQENL--------IEAPCRVLGLSKDQALARAEK 124
Query: 321 VLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQ 380
+LK L L D +SGGQ++RV L+ VL DE + LD T Q
Sbjct: 125 LLKRLRL-----KPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179
Query: 381 ICKFLKQM----------VHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDN 430
I +K++ H ++V A ++ + G IV QG
Sbjct: 180 IVSIIKELAETGITQVIVTHEVEVARKTA------------SRVVYMENGHIVEQG---- 223
Query: 431 VLEFFEHMGFKCPERKGVADFL 452
+ F P+ + ++L
Sbjct: 224 -----DASCFTEPQTEAFKNYL 240
|
Length = 242 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 49/240 (20%), Positives = 93/240 (38%), Gaps = 48/240 (20%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
IL ++S V+ + GP G GK+TL+ +A + SG + + G +++ P+
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEA 74
Query: 245 --RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+ +Y +Q G+ TV + L F +++ +PD A
Sbjct: 75 YRQQVSYCAQTPALFGD-TVEDNLIFP---------WQIRNR----------RPDR--AA 112
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
+ +A S++T + +SGG+K+R+ L
Sbjct: 113 ALDLLARFALPDSILTKNI-------------------TELSGGEKQRIALIRNLQFMPK 153
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422
+L +DEI++ LD S I + + + V +V ++ + D +I L G
Sbjct: 154 ILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 55/255 (21%), Positives = 102/255 (40%), Gaps = 53/255 (20%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP- 243
R+++DVS V + LLGP GAGKTT + G + +D +G I +++ +P
Sbjct: 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDIS-LLPL 72
Query: 244 ----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGV-GTRYELLAELSRREKQAGIKPDP 298
+R Y+ Q E ++ L + V R +L AE +RE +A
Sbjct: 73 HARARRGIGYLPQ------EASIFRRLSVYDNLMAVLQIRDDLSAE--QREDRA------ 118
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
+ M+ + S+ + +SGG+++RV L
Sbjct: 119 --NELMEEFHIEHLRDSM-----------------------GQSLSGGERRRVEIARALA 153
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL-QPAPETYDLFDDIILL 417
+ +DE G+D + I + ++ H+ D + V + ET + + ++
Sbjct: 154 ANPKFILLDEPFAGVDPISVIDIKRIIE---HLRDSGLGVLITDHNVRETLAVCERAYIV 210
Query: 418 SEGQIVYQGPRDNVL 432
S+G ++ G +L
Sbjct: 211 SQGHLIAHGTPTEIL 225
|
Length = 241 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-04
Identities = 62/273 (22%), Positives = 101/273 (36%), Gaps = 91/273 (33%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASGKITYCGHELNEF 241
IL +S + + ++G GAGK+T++ L R SG IT G ++ +
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLL-------FRFYDVNSGSITIDGQDIRDV 330
Query: 242 -----------VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 290
VPQ T + T+ + + T E+ A +
Sbjct: 331 TQQSLRRAIGIVPQDTVLFND---------TIAYNIKYGRP---DATAEEVGAAAEAAQI 378
Query: 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG--ISGGQK 348
I+ PE G D T VG+ RG +SGG+K
Sbjct: 379 HDFIQSLPE--------------------------GYD----TGVGE---RGLKLSGGEK 405
Query: 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQ---------MVHILDVTMIVA 399
+RV ++ +L +DE ++ LD+ T I L++ + H L T+I A
Sbjct: 406 QRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLS-TIIDA 464
Query: 400 LLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432
D+II+L G+IV +G + +L
Sbjct: 465 ------------DEIIVLDNGRIVERGTHEELL 485
|
Length = 497 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 176 LVPSKKRSV-----RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGK 230
LV + SV R+L DVS +KP ++ LLGP GAGK+TL+ + G + D G
Sbjct: 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGV 60
Query: 231 ITYCGHELNEFVPQR 245
I G +VPQ+
Sbjct: 61 IKRNGKLRIGYVPQK 75
|
Length = 251 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 6e-04
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEFVP 243
+L +++ V+P L+ G GAGKT+L+ ALAG L SG+I+ F+P
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAG-----LWPWGSGRISMPADSALLFLP 462
Query: 244 QRTCAYISQ 252
QR Y+ Q
Sbjct: 463 QRP--YLPQ 469
|
Length = 604 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 6e-04
Identities = 55/273 (20%), Positives = 108/273 (39%), Gaps = 52/273 (19%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLAL--AGKLGKDLRASGKITYCGHEL-----N 239
+KDVS + +T ++GP G GK+T++ ++ L R +GKI ++ +
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 240 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+R + Q M++ + V Y+L ++R E D
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDN---------VIAGYKLNGRVNRSEA------DEI 124
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
+++ +K VA+ D D + + M +SGGQ++R+ +
Sbjct: 125 VESSLKRVAL-----------------WDEVKDRLKSNAME--LSGGQQQRLCIARTIAV 165
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419
V+ MDE ++ LD +T +I + ++++ + ++ +Q A D
Sbjct: 166 KPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDY---TAFFYM 222
Query: 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
G +V G + F PE+K D++
Sbjct: 223 GDLVECGETKKI--------FTTPEKKQTEDYI 247
|
Length = 252 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 6e-04
Identities = 54/259 (20%), Positives = 104/259 (40%), Gaps = 55/259 (21%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
ILK+V+ + + +T L+GP G GK+T + L R + I HE +
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLN-------RMNDLIPGFRHEGH------ 64
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
Y+ D++ + V EL ++ KP+P +
Sbjct: 65 --IYLDGVDIYDPAVDV--------------------VELRKKVGMVFQKPNPFPKSIFD 102
Query: 306 AVA----VAGQETSLVTDYVLKILGLDICADTM---VGDEMRR---GISGGQKKRVTTGE 355
VA + G++ D++ + + + A + V D++ + G+SGGQ++R+
Sbjct: 103 NVAYGLRIHGEDDE---DFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIAR 159
Query: 356 MLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET--YDLFDD 413
+ + V+ MDE + LD +T +I + ++ + ++ +Q A Y F
Sbjct: 160 TIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSF-- 217
Query: 414 IILLSEGQIVYQGPRDNVL 432
G+I+ G D +
Sbjct: 218 ---FLNGEIIESGLTDQIF 233
|
Length = 250 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 7e-04
Identities = 60/273 (21%), Positives = 104/273 (38%), Gaps = 78/273 (28%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT-------LMLALAGKL---GKDL---- 225
KKR +++ DVS V + LLGP GAGKTT L+ +GK+ +D+
Sbjct: 15 KKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLP 72
Query: 226 ---RASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELL 282
RA I Y +PQ + ++TV + ++
Sbjct: 73 MHKRARLGIGY--------LPQEASIF--------RKLTVEDN---------------IM 101
Query: 283 AELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342
A L REK D + E D +L+ + D+
Sbjct: 102 AVLEIREK------DLKK-----------AERKEELDALLEEFHITHLRDSKAY-----S 139
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL- 401
+SGG+++RV L + +DE G+D I ++++ L I L+
Sbjct: 140 LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDI----QRIIKHLKDRGIGVLIT 195
Query: 402 -QPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433
ET D+ D ++S+G+++ +G + ++
Sbjct: 196 DHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228
|
Length = 243 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 7e-04
Identities = 53/253 (20%), Positives = 107/253 (42%), Gaps = 43/253 (16%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLAL--AGKLGKDLRASGKITYCGHELNEFVPQ 244
L D++ + +++T L+GP G GK+T + L L +++ G++ G
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKN------- 72
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
I D+ E+ R + F + Y+ +A R GIK E+D
Sbjct: 73 -----IYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIH---GIKDKKELD--- 121
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR---GISGGQKKRVTTGEMLVGTA 361
K V A ++ +L + V D++++ +SGGQ++R+ +
Sbjct: 122 KIVEWALKKAALWDE---------------VKDDLKKSALKLSGGQQQRLCIARTIAVKP 166
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD-----LFDDIIL 416
+V+ MDE ++ LD +T +I + ++ + ++ +Q A D L D+I
Sbjct: 167 DVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIE 226
Query: 417 LSEGQIVYQGPRD 429
++ + ++ P+
Sbjct: 227 FNKTEKIFLEPQK 239
|
Length = 251 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQK+RV +L ++ DE ++ LD +I K + + T+I
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISI--- 199
Query: 403 PAPETYD-----LFDDIILLSEGQIVYQGPRDNVL---EFFEHMGFKCPERKGVADFLQE 454
T+D L D +I+ SEG+++ QG +L E E P ++ L+
Sbjct: 200 ----THDMDEAILADKVIVFSEGKLIAQGKPKEILNNKEILEKAKIDSPFIYKLSKKLKG 255
Query: 455 VTSKKDQEQ 463
+ ++E+
Sbjct: 256 IDPTYNEEE 264
|
Length = 271 |
| >gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 32/161 (19%), Positives = 53/161 (32%), Gaps = 27/161 (16%)
Query: 62 IERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKR 121
+ T L + + D + E + ++ L+ + + E+D E+ LK+
Sbjct: 168 LGPPGTGKTLAARTVGKSGADLGALAKEAALR--ELRRAIDLVGEYIGVTEDDFEEALKK 225
Query: 122 IRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKK 181
+ + V E V D G L A+ L +
Sbjct: 226 VL-PSRGVLFEDED---------VTLDDIGGLEEAKEELKEAIETP-----LKR---PEL 267
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222
L+ G+ LL GPPG GKT L A+A +
Sbjct: 268 FRKLGLRPPKGV-------LLYGPPGTGKTLLAKAVALESR 301
|
Length = 494 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 9e-04
Identities = 58/258 (22%), Positives = 105/258 (40%), Gaps = 50/258 (19%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
R L +S + ++G GAGK+TL+ A+AG L SG+I G +
Sbjct: 13 KGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVD 69
Query: 238 LNEF-VPQR--TCAYISQHDLHH--GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA 292
+ + V +R A + Q L E+T+ E L LAE R K+
Sbjct: 70 VTKKSVAKRANLLARVFQDPLAGTAPELTIEENL--------------ALAE--SRGKKR 113
Query: 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT 352
G+ + + ++ L + + + D + +SGGQ++ ++
Sbjct: 114 GLSS--------------ALNERRRSSFRERLARLGLGLENRLSDRIGL-LSGGQRQALS 158
Query: 353 TGEMLVGTAN---VLYMDEISTGLDSSTTFQICKFLKQMV--HILDVTMIVALLQPAPET 407
+L+ T + +L +DE + LD T + + ++V H L M+ ++ A
Sbjct: 159 ---LLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDA--- 212
Query: 408 YDLFDDIILLSEGQIVYQ 425
D + +I+L G+IV
Sbjct: 213 LDYGNRLIMLHSGKIVLD 230
|
Length = 263 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.001
Identities = 58/268 (21%), Positives = 106/268 (39%), Gaps = 59/268 (22%)
Query: 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDL---RASGKITYCGHELNEFVPQRTCAYIS 251
+ +T L+GP G GK+T + L ++ D+ + +G+I + G + Y S
Sbjct: 28 EEKELTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNI----------YGS 76
Query: 252 QHDL----HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAV 307
+ DL M ++ F + + ++ K AG+K ID +
Sbjct: 77 KMDLVELRKEVGMVFQQPTPFP---------FSVYDNVAYGLKIAGVKDKELIDQRV--- 124
Query: 308 AVAGQETSLVTDYVLKILGLDICADTMVGDEMRR---GISGGQKKRVTTGEMLVGTANVL 364
E SL + K D + R SGGQ++R+ L V+
Sbjct: 125 -----EESLKQAAIWK----------ETKDNLDRNAQAFSGGQQQRICIARALAVRPKVV 169
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424
+DE ++ LD ++ +I + L ++ H M+ LQ A + D L G ++
Sbjct: 170 LLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGR---ISDQTAFLMNGDLIE 226
Query: 425 QGPRDNVLEFFEHMGFKCPERKGVADFL 452
GP + + F P+++ +D+L
Sbjct: 227 AGPTEEM--------FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.001
Identities = 54/261 (20%), Positives = 103/261 (39%), Gaps = 47/261 (18%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
++LK+++ ++T ++GP G GK+TL+ AL + +N+ V
Sbjct: 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRAL------------------NRMNDIV-- 57
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
+ A + L E LD + L +R +P+P +
Sbjct: 58 -SGARLEGAVLLDNENIYSPNLD--------------VVNLRKRVGMVFQQPNPFPKSIF 102
Query: 305 KAVAVAGQ-----ETSLVTDYVLKILGLDICADTMVGDEMRRG--ISGGQKKRVTTGEML 357
VA + S + + V K L D + + + G +SGGQ++R+ +L
Sbjct: 103 DNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVL 162
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD-----LFD 412
V+ MDE + LD +T +I + ++++ + ++ +Q A D L
Sbjct: 163 AIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTG 222
Query: 413 DIILLSEGQIVYQGPRDNVLE 433
D++ ++ PRD E
Sbjct: 223 DLVEYGRTGEIFSRPRDKRTE 243
|
Length = 251 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 46/238 (19%), Positives = 98/238 (41%), Gaps = 48/238 (20%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+ + ++ +S + +++T ++GP G GK+T +
Sbjct: 19 TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFI---------------------------- 50
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGI---KPDPE 299
+T IS+ + G + V +DF G+ + Y+ ++R +Q G+ +P+P
Sbjct: 51 --KTLNRISELE---GPVKVEGVVDFFGQNI-----YDPRININRLRRQIGMVFQRPNPF 100
Query: 300 IDAFMKAVA----VAGQETSLVTDYVLKILGLDICADTMVGDEMRR---GISGGQKKRVT 352
+ + VA ++ + D +++ V D++ + G+SGGQ++R+
Sbjct: 101 PMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLC 160
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410
L VL MDE + LD T ++ + + + L + ++ +Q A D
Sbjct: 161 IARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDF 218
|
Length = 259 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.001
Identities = 36/133 (27%), Positives = 53/133 (39%), Gaps = 31/133 (23%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQM-----------VHI 391
+SGGQK+RV L VL DE ++ LD +TT I + LK + H
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHE 200
Query: 392 LDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADF 451
+DV + D + ++ G++V QG V E F H P+ +F
Sbjct: 201 MDVVKRIC------------DRVAVIDAGRLVEQGT---VSEVFSH-----PKHPLTREF 240
Query: 452 LQEVTSKKDQEQY 464
+Q E Y
Sbjct: 241 IQSTLHLDLPEDY 253
|
Length = 343 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 59/246 (23%), Positives = 101/246 (41%), Gaps = 46/246 (18%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
I ++S V ++T ++GP G GKTTL+ + G++ D G+I + G E +P
Sbjct: 22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDG----ENIPA- 73
Query: 246 TCAYISQHDLHHGEMTVRETLDF---SGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+S+ L+ TVR+ + SG ++ +A R Q P P + +
Sbjct: 74 ----MSRSRLY----TVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQL---PAPLLHS 122
Query: 303 --FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
MK AV GL A M + +SGG +R +
Sbjct: 123 TVMMKLEAV----------------GLRGAAKLMPSE-----LSGGMARRAALARAIALE 161
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420
+++ DE G D T + K + ++ L VT +V + PE + D ++++
Sbjct: 162 PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVV-VSHDVPEVLSIADHAYIVADK 220
Query: 421 QIVYQG 426
+IV G
Sbjct: 221 KIVAHG 226
|
Length = 269 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 61/270 (22%), Positives = 105/270 (38%), Gaps = 67/270 (24%)
Query: 174 LHLVPSK------KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA 227
+HL+ ++ S L +++ I + ++GP GAGK+TL G L
Sbjct: 1 MHLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP---T 57
Query: 228 SGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSR 287
SG + G I++ ++ VR+ VG ++
Sbjct: 58 SGSVLIRGEP------------ITKENIRE----VRKF---------VGLVFQ------- 85
Query: 288 REKQAGIKPDPEIDAFMKAVAVA------GQETSLV---TDYVLKILGLDICADTMVGDE 338
PD +I + +A G + V L +LGL+ + D
Sbjct: 86 -------NPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLE-----ELRDR 133
Query: 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV 398
+ +SGG+KKRV ++ VL +DE + GLD ++ FL + +T+I
Sbjct: 134 VPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIF 193
Query: 399 AL--LQPAPETYDLFDDIILLSEGQIVYQG 426
+ L PE + D I ++ +G+IV G
Sbjct: 194 STHQLDLVPE---MADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.002
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT 232
+LKD+S + P L+G GAGK+TL+ +AG+L D G +T
Sbjct: 15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVT 58
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403
SGGQ++RV L ++L DE +T LD + QI LK++ L + ++
Sbjct: 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFI---- 214
Query: 404 APETYDL------FDDIILLSEGQIVYQGPRDNVLEFFEH 437
T+DL D + ++ G+IV G + + +H
Sbjct: 215 ---THDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQH 251
|
Length = 534 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
+L++VS ++P ++GP G+GK+TL + G L SG++ G +++++ P
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNE 73
Query: 245 --RTCAYISQHD 254
Y+ Q D
Sbjct: 74 LGDHVGYLPQDD 85
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 46/236 (19%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE-FVPQRTCAYISQ 252
+K M LLGP G GKTT++ +AG L K G+I G ++ + QR + Q
Sbjct: 29 IKQGTMVTLLGPSGCGKTTVLRLVAG-LEKP--TEGQIFIDGEDVTHRSIQQRDICMVFQ 85
Query: 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQ 312
M++ E + + + LGV E +R K+A ++ V +AG
Sbjct: 86 SYALFPHMSLGENVGYGLKMLGVPK-----EERKQRVKEA-----------LELVDLAGF 129
Query: 313 ETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372
E V D+ ISGGQ++RV L+ VL DE +
Sbjct: 130 EDRYV-------------------DQ----ISGGQQQRVALARALILKPKVLLFDEPLSN 166
Query: 373 LDSSTTFQICKFLKQMVHILDVT-MIVALLQPAPETYDLFDDIILLSEGQIVYQGP 427
LD++ + + ++++ ++T + V Q E + + D +I++++G+I+ G
Sbjct: 167 LDANLRRSMREKIRELQQQFNITSLYVTHDQ--SEAFAVSDTVIVMNKGKIMQIGS 220
|
Length = 351 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 50/224 (22%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
L D+S + +++T L+GP G GK+T LR C + +N+ +P
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTF-----------LR-------CLNRMNDLIP--- 60
Query: 247 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKA 306
++ + GE+ + + + + V EL RR KP+P + +
Sbjct: 61 ---GARVE---GEILL-DGENIYDPHVDV-------VELRRRVGMVFQKPNPFPKSIFEN 106
Query: 307 VA----VAG-QETSLVTDYVLKILG----LDICADTMVGDEMRRGISGGQKKRVTTGEML 357
VA V G ++ + + + V + L D D + E G+SGGQ++R+ L
Sbjct: 107 VAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRL--HESALGLSGGQQQRLCIARAL 164
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401
VL MDE ++ LD T +I ++++H L + ++
Sbjct: 165 AVEPEVLLMDEPASALDPIATQKI----EELIHELKARYTIIIV 204
|
Length = 253 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.002
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 312 QETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST 371
+E +LV D + K+ + D + + + +SGGQ++R+ L +L +DE ++
Sbjct: 114 EEEALVVDCLQKVGLFEEVKDKLKQNAL--ALSGGQQQRLCIARALAIKPKLLLLDEPTS 171
Query: 372 GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-----FDDIILLSEGQIVYQG 426
LD ++ I + LK++ H L + M+ +Q D ++I E + ++
Sbjct: 172 ALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231
Query: 427 PRD 429
P+
Sbjct: 232 PKQ 234
|
Length = 246 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 28/225 (12%), Positives = 71/225 (31%), Gaps = 10/225 (4%)
Query: 523 LFRACFAREWLLMKRNSFVY-IFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALF 581
R + L+ + I + + + + F
Sbjct: 35 FLRRLLEFQVLVDASALIIAPILYLIIFGLLFGL-REGLSGRLYHWSNPSLDYLAFIVPG 93
Query: 582 FSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFY---PSWAFALPIWLLRIPISILDSTIW 638
L++++F+G + L + + L L + + ++ L + +
Sbjct: 94 VILMSVLFSGIFS-FSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLV 152
Query: 639 VALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAA--VGRTEVISNTLGTFILLI 696
+ + + +G S L + ++ L+ + ++ +G ++L
Sbjct: 153 LLVIAFLLGVPFLGSLLL--LLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILP 210
Query: 697 MMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWD 741
+ L G + + +L+ YI+P+ Y +L G R D
Sbjct: 211 LGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWRND 255
|
Length = 286 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTL--MLALAGKLGKDLRASGKITYCGHELNE 240
LKD++ + +++T L+GP G GK+TL L L R G++ G + +
Sbjct: 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78
|
Length = 253 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 0.003
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 22/89 (24%)
Query: 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV----------HILD 393
SGG K+R+ + L+ +L +DE ++GLD + + + L+++ HIL+
Sbjct: 97 SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE 156
Query: 394 VTMIVALLQPAPETYDLFDDIILLSEGQI 422
E L D + +L+ G+I
Sbjct: 157 ------------EAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 17/116 (14%)
Query: 324 ILGLDICADTMVGDEMRRGI--SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQI 381
IL L DT VG+ RG+ SGGQK+R++ L+ A +L +D+ + +D T QI
Sbjct: 434 ILRLPQGYDTEVGE---RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQI 490
Query: 382 CKFLKQMVH----ILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433
L+Q I+ + AL + +I+++ G I +G D + +
Sbjct: 491 LHNLRQWGEGRTVIISAHRLSALTEA--------SEILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 47/242 (19%), Positives = 85/242 (35%), Gaps = 66/242 (27%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLAL--AGKLGKDLRASGKITYCGHELNEFVPQ 244
+K+V + +++T +GP G GK+T++ L R GK+T+ G L
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNL------ 79
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
Y D E+ RR KP+P +
Sbjct: 80 ----YAPDVD---------------------------PVEVRRRIGMVFQKPNPFPKSIY 108
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG----------------ISGGQK 348
+A Y +I G D +V +R+ +SGGQ+
Sbjct: 109 DNIA-----------YGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQ 157
Query: 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408
+R+ + V+ MDE + LD +T +I + + ++ + ++ +Q A
Sbjct: 158 QRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVS 217
Query: 409 DL 410
D+
Sbjct: 218 DM 219
|
Length = 264 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 60/233 (25%), Positives = 93/233 (39%), Gaps = 51/233 (21%)
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEM 260
LLGP G GKTT++ +AG D SG+I G ++ R + Q M
Sbjct: 45 LLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHM 101
Query: 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY 320
TV E + F R AE++ R +A
Sbjct: 102 TVFENVAFGLRMQKTPA-----AEITPRVMEA---------------------------- 128
Query: 321 VLKILGLDICADTMVGDEMRR--GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTT 378
L+++ L+ A R+ +SGGQ++RV +V VL +DE + LD
Sbjct: 129 -LRMVQLEEFAQ-------RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLR 180
Query: 379 FQICKFLKQMVHILDVTMI-VALLQPAPETYDLFDDIILLSEGQIVYQG-PRD 429
Q+ LK + L +T + V Q E + D I+++ +G+I G PR+
Sbjct: 181 KQMQNELKALQRKLGITFVFVTHDQ--EEALTMSDRIVVMRDGRIEQDGTPRE 231
|
Length = 375 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 49/217 (22%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
K IL D++ ++ +M ++G G+GK+TL L + G L K SG++ G E
Sbjct: 7 KFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTL-LNIIGLLEKF--DSGQVYLNGQETP 63
Query: 240 EFVPQR-------TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA 292
++ Y+ Q+ TV E LD LG+ +LS++EK+
Sbjct: 64 PLNSKKASKFRREKLGYLFQNFALIENETVEENLD-----LGL-----KYKKLSKKEKRE 113
Query: 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT 352
K L+ +GL++ + + +SGG+++RV
Sbjct: 114 KKK------------------------EALEKVGLNLKLKQKIYE-----LSGGEQQRVA 144
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV 389
++ ++ DE + LD ++ L ++
Sbjct: 145 LARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN 181
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 59/271 (21%), Positives = 89/271 (32%), Gaps = 90/271 (33%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG-----HELNEF 241
L +SG V+ + L+GP GAGK+TL+ +AG SG I + G E
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS----GSGSIQFAGQPLEAWSATEL 70
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
R AY+SQ M V L +PD
Sbjct: 71 ARHR--AYLSQQQTPPFAMPVWHYLTLH-------------------------QPDKT-- 101
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI---SGGQKKRVTTGEMLV 358
+ V L LD D++ R SGG+ +RV +++
Sbjct: 102 -------RTEL-----LNDVAGALALD--------DKLGRSTNQLSGGEWQRVRLAAVVL 141
Query: 359 G-------TANVLYMDEISTGLDSSTTFQICKFLKQMV----------HILDVTMIVALL 401
+L +DE LD + + + L + H L+ T L
Sbjct: 142 QITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHT-----L 196
Query: 402 QPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432
+ A LL G+++ G R+ VL
Sbjct: 197 RHA-------HRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 56/246 (22%), Positives = 102/246 (41%), Gaps = 56/246 (22%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQ 252
V+ +LGP GAGK+TL+ +AG L SG +T G + P +R + + Q
Sbjct: 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQ 312
+ +TV + + G+G L ++REK I A Q
Sbjct: 79 ENNLFSHLTVAQNI-------GLGLNPGLKLNAAQREKLHAI---------------ARQ 116
Query: 313 ETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372
+G++ + G +SGGQ++RV LV +L +DE +
Sbjct: 117 ------------MGIEDLLARLPGQ-----LSGGQRQRVALARCLVREQPILLLDEPFSA 159
Query: 373 LDSSTTFQICKFLKQMVHILDVTMIVA------LLQPAPETYDLFDDIILLSEGQIVYQG 426
LD + ++ + Q+ +T+++ + AP + +++++G+I + G
Sbjct: 160 LDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRS-------LVVADGRIAWDG 212
Query: 427 PRDNVL 432
P D +L
Sbjct: 213 PTDELL 218
|
Length = 232 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 56/256 (21%), Positives = 98/256 (38%), Gaps = 56/256 (21%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLAL-------AGKL---GKDLRASGKITYCGH 236
+ D + + +++G G+GK+T + L AG++ G+++ +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPV----- 63
Query: 237 ELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
EL E V ++ + Q MT+ + LG E R+EK
Sbjct: 64 ELRE-VRRKKIGMVFQQFALFPHMTILQNTSLGPELLGW-------PEQERKEKA----- 110
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
++ LK++GL+ DE+ SGG ++RV
Sbjct: 111 ---LEL-------------------LKLVGLEEYEHRY-PDEL----SGGMQQRVGLARA 143
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
L ++L MDE + LD + LK++ L T IV + E + D I++
Sbjct: 144 LAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKT-IVFITHDLDEAIRIGDRIVI 202
Query: 417 LSEGQIVYQGPRDNVL 432
+ G+IV G D +L
Sbjct: 203 MKAGEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 58/250 (23%), Positives = 98/250 (39%), Gaps = 38/250 (15%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
PS + V +LK +S + M ++G G+GK+TLM L G L K SG G +
Sbjct: 15 PSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL-GCLDKP--TSGTYRVAGQD 71
Query: 238 LNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ RE F + RY LL+ L+ + +
Sbjct: 72 VATLDADALAQL------------RREHFGF------IFQRYHLLSHLTAAQ-------N 106
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
E+ A + + +L+ LGL+ + +SGGQ++RV+ L
Sbjct: 107 VEVPAVYAGLERKQRLLRAQE--LLQRLGLEDRVEYQPSQ-----LSGGQQQRVSIARAL 159
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417
+ V+ DE + LDS + ++ L Q+ +IV P+ + +I +
Sbjct: 160 MNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVT---HDPQVAAQAERVIEI 216
Query: 418 SEGQIVYQGP 427
+G+IV P
Sbjct: 217 RDGEIVRNPP 226
|
Length = 648 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 824 | |||
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.98 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.98 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.98 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.98 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.98 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.98 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.97 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.97 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.97 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.97 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.97 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.97 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.97 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.97 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.97 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.96 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.96 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.96 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.96 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.96 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.95 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.95 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.95 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.94 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.94 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.93 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.93 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.92 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.92 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.92 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.91 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.9 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.9 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.89 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.88 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.88 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.87 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.87 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.87 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.86 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.85 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.84 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.83 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.83 | |
| PF01061 | 210 | ABC2_membrane: ABC-2 type transporter; InterPro: I | 99.83 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.83 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.82 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.81 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.79 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.79 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.76 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.76 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.74 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.72 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.71 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.7 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.69 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.69 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.67 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.66 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.66 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.66 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.66 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.65 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.6 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.6 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.59 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.57 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.55 | |
| PF08370 | 65 | PDR_assoc: Plant PDR ABC transporter associated; I | 99.5 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.5 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.5 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.49 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.48 | |
| TIGR01247 | 236 | drrB daunorubicin resistance ABC transporter membr | 99.47 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.36 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.35 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.31 | |
| TIGR03062 | 208 | pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa | 99.28 | |
| TIGR00025 | 232 | Mtu_efflux ABC transporter efflux protein, DrrB fa | 99.25 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.25 | |
| TIGR01291 | 253 | nodJ ABC-2 type transporter, NodJ family. Nearly a | 99.23 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.22 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.18 | |
| TIGR03861 | 253 | phenyl_ABC_PedC alcohol ABC transporter, permease | 99.18 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 99.17 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.15 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.14 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.12 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.06 | |
| PRK15066 | 257 | inner membrane transport permease; Provisional | 99.06 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.05 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.05 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 99.03 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.0 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.0 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 98.98 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 98.96 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 98.96 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 98.95 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 98.93 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.91 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.89 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 98.88 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 98.87 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 98.76 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.75 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 98.75 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.72 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.72 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.71 | |
| COG0842 | 286 | ABC-type multidrug transport system, permease comp | 98.69 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.68 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.66 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.65 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.63 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 98.62 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.58 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.57 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.55 | |
| TIGR01248 | 152 | drrC daunorubicin resistance protein C. The model | 98.52 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.51 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.45 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.44 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.44 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.33 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.32 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.29 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.27 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.27 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.26 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.16 | |
| TIGR03518 | 240 | ABC_perm_GldF gliding motility-associated ABC tran | 98.15 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.11 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.09 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 97.98 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.97 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.94 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 97.89 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 97.88 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 97.85 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 97.84 | |
| COG1682 | 263 | TagG ABC-type polysaccharide/polyol phosphate expo | 97.83 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.82 | |
| PF12679 | 277 | ABC2_membrane_2: ABC-2 family transporter protein | 97.8 | |
| PRK13764 | 602 | ATPase; Provisional | 97.79 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 97.79 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 97.78 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 97.78 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.77 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 97.74 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 97.74 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 97.73 | |
| PRK15176 | 264 | Vi polysaccharide export inner membrane protein Ve | 97.72 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 97.72 |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-143 Score=1353.10 Aligned_cols=771 Identities=59% Similarity=1.023 Sum_probs=704.9
Q ss_pred ccccCCCccccCC-------Cc-cCchHhhHHHHHhhCCChhhhhhhcccccc-cCCcee---eEEeeccccchhhHHHH
Q 003389 36 EVWNAPDNVFSRS-------ER-QDDEEELRWAAIERLPTYDRLKKGMLNQVL-EDGKVV---KHEVDVSNLAVQDKKRL 103 (824)
Q Consensus 36 ~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~ 103 (824)
++|. .+++|++. +. |||||+|+|||+||||||+|+|++++.+.. ++|... ..++|+.+++.++++.+
T Consensus 19 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (1470)
T PLN03140 19 SSRN-MEDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKF 97 (1470)
T ss_pred hhhh-hhhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHHHH
Confidence 4553 36777432 12 789999999999999999999999996421 111111 12499999999999999
Q ss_pred HHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccccCcccc
Q 003389 104 LESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRS 183 (824)
Q Consensus 104 ~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~ 183 (824)
++|+.++.++|+++++.+++++.+++|+++|+++|+|+||+|++++.++.+.+||++|.+.+.++.+....+...+++.+
T Consensus 98 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~ 177 (1470)
T PLN03140 98 IDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTK 177 (1470)
T ss_pred HHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999888776655543344456
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
++||+||||.|+|||+++|+||||||||||||+|+|+++++.+++|+|+|||+++++..+++.++||+|+|.|++++||+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 78999999999999999999999999999999999999887678999999999987766678899999999999999999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
|||.|+++|++++.+.+++.+++++++++++.|+.+++.+|++...++.+.+..++++|+.+||++|+||.||++++++|
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 99999999988766555556677788888888888899999998888887778899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEE
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv 423 (824)
||||||||+||++|+++|++|||||||+|||+.++.++++.|+++++..|+|+|+++|||.++++++||+|++|++|+++
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~iv 417 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV 417 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEE
Confidence 99999999999999999999999999999999999999999999988678999999999999999999999999999999
Q ss_pred EecChhhHHHHHHHcCCCCCCCCCHHHHHHHhhcchhhhHHHhhcCCCCcCCChhHHHHHHhhchhhHHHHhhhcCCCCC
Q 003389 424 YQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDK 503 (824)
Q Consensus 424 ~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~ 503 (824)
|+||++++.+||+++||+||+++|||||++++++++++++||.+...|+++.++++|+++|++++.++++.++++.|.++
T Consensus 418 y~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 497 (1470)
T PLN03140 418 YQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDK 497 (1470)
T ss_pred EeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999998899988778888899999999999999999999988888777
Q ss_pred CCCCCCcccccccCCcHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhhHHHHHHH
Q 003389 504 SQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFS 583 (824)
Q Consensus 504 ~~~~~~~~~~~~~~~s~~~q~~~~~~R~~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~~~g~lFf~ 583 (824)
++.++..+..++|..++|+|+++|++|++++++||+.++++|++|.+++|+++|++||++++++.+..+++.+.|++||+
T Consensus 498 ~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~ 577 (1470)
T PLN03140 498 SQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFS 577 (1470)
T ss_pred hhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHH
Confidence 76677766678899999999999999999999999999999999999999999999999988766666788899999999
Q ss_pred HHHHHHhhHHHHHHHhhhhhHHHHHhhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHH
Q 003389 584 LLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFF 663 (824)
Q Consensus 584 ~~~~~f~~~~~~~~~~~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~ 663 (824)
+++++|++++++++++.+||||+|||+.+||++|+|++|+++++||+.++++++|++|+|||+||++++++||+|+++++
T Consensus 578 ~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~ 657 (1470)
T PLN03140 578 MIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVF 657 (1470)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhhcCCcccCC
Q 003389 664 SIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQ 743 (824)
Q Consensus 664 l~~~~~~sl~~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf~~~~~~~~ 743 (824)
+++++++++|+++++++||+.+|+++++++++++++||||+||+++||+||+|++|+||++||++|+++|||.+++|.+.
T Consensus 658 l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~ 737 (1470)
T PLN03140 658 LIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNK 737 (1470)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998743
Q ss_pred CCCCCCcccchhHHHHhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCccccc
Q 003389 744 NKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEE 809 (824)
Q Consensus 744 ~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~~L~~~~v~f~~l~~laL~~~~~~~~~~~~~~~~ 809 (824)
.+++ .+.+.|+++|+++|+..++.|+|+++|+|+||+++|+++++++|+|+++..+++++++++
T Consensus 738 ~~~~--~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~ 801 (1470)
T PLN03140 738 MASD--NSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEE 801 (1470)
T ss_pred ccCC--CCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCcccccc
Confidence 2221 246789999999999998899999999999999999999999999999877777765443
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-141 Score=1265.31 Aligned_cols=718 Identities=53% Similarity=0.923 Sum_probs=676.3
Q ss_pred cCchHhhHHHHHhhCCChhhhhhhcccccccCCceeeEEeeccccchhhHHHHHHHHHHHhccChHHHHHHHhhhccccC
Q 003389 51 QDDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVG 130 (824)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~ 130 (824)
+||||+|||||+|||||++| +++.+.. +.++|+.+++..++..++++..+..++|+|+++.+++++.+++
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~------~~~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~- 81 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIF------ESEVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV- 81 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhc------cCcccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc-
Confidence 46999999999999999999 6665321 2368999999999999999999999999999999999999988
Q ss_pred CCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcH
Q 003389 131 IEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGK 210 (824)
Q Consensus 131 ~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGK 210 (824)
+.|.++++++++.+++++..| ||+.|...+..+..+...+.. ++...+||+|+||.++||||++++|||||||
T Consensus 82 -~~p~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ 154 (1391)
T KOG0065|consen 82 -ELPTIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGK 154 (1391)
T ss_pred -cCCceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCch
Confidence 899999999999999998766 999999999999888777665 4455789999999999999999999999999
Q ss_pred HHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHH
Q 003389 211 TTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 290 (824)
Q Consensus 211 STLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~ 290 (824)
||||++|+|.++......|+|+|||++.+++.+++.++|++|+|.|+|+|||+|+|+|+++|++++.|++ ++.|+|+
T Consensus 155 ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~ 231 (1391)
T KOG0065|consen 155 TTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREK 231 (1391)
T ss_pred HHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHH
Confidence 9999999999988777789999999999999889999999999999999999999999999999988765 5666665
Q ss_pred hcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCC
Q 003389 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIS 370 (824)
Q Consensus 291 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPT 370 (824)
.+ ..+|++++++||++|+||+|||++.||+||||||||+||+++++++++++|||+|
T Consensus 232 ~~-----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t 288 (1391)
T KOG0065|consen 232 LA-----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEIT 288 (1391)
T ss_pred HH-----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccc
Confidence 42 1578999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHH
Q 003389 371 TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVAD 450 (824)
Q Consensus 371 sGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad 450 (824)
+|||++|+.+|+++||+++|..+.|++++++||+++++++||+|++|++|++||+||++++++||+++||.||+++++||
T Consensus 289 ~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~AD 368 (1391)
T KOG0065|consen 289 RGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTAD 368 (1391)
T ss_pred ccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchhhhHHHhhcCCCCcCCChhHHHHHHhhchhhHHHHhhhcCCCCCCCCCCCcccccccCCcHHHHHHHHHHH
Q 003389 451 FLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAR 530 (824)
Q Consensus 451 fl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~R 530 (824)
||+++++++++.|||..++.|+.+.+++||.+.|.+++.++++..+++.|+++++.|+.++..++|.+++|+|+++|+.|
T Consensus 369 fLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R 448 (1391)
T KOG0065|consen 369 FLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIR 448 (1391)
T ss_pred HHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhChhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHhh
Q 003389 531 EWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRD 610 (824)
Q Consensus 531 ~~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~~~g~lFf~~~~~~f~~~~~~~~~~~~~~vf~ker~ 610 (824)
+|++++||.+++++++++.+++|+|+|++|+++++ ++..++..|.|++||++++.+|++++|+++++++||||+|||+
T Consensus 449 ~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~ 526 (1391)
T KOG0065|consen 449 EFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRD 526 (1391)
T ss_pred HHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhc
Confidence 99999999999999999999999999999999995 5566788999999999999999999999999999999999999
Q ss_pred cCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHccCchHHHHHHH
Q 003389 611 HLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLG 690 (824)
Q Consensus 611 ~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl~~~iaa~~~~~~~A~~~~ 690 (824)
..|||||||.+|.+++++|++++++++|.+|+||++||.++|++||+|||+++++++|++++|++++++++|+.+|+++|
T Consensus 527 ~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g 606 (1391)
T KOG0065|consen 527 LSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIG 606 (1391)
T ss_pred ccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhhcCCcccCCCCCCCC---------c---ccchhHHH
Q 003389 691 TFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSI---------N---QPTIGKVL 758 (824)
Q Consensus 691 ~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf~~~~~~~~~~~~~~---------~---~~~~G~~~ 758 (824)
++.++++++++||+||+.+||+||+|++|+||++||+|+|++|||++++|+|.+.|+.+ | ..+.|.++
T Consensus 607 ~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~ 686 (1391)
T KOG0065|consen 607 GILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDY 686 (1391)
T ss_pred HHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceE
Confidence 99999999999999999999999999999999999999999999999999997433321 2 35689999
Q ss_pred HhhcCCc-----cCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCccccccchh
Q 003389 759 LKIRGFS-----TESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEK 813 (824)
Q Consensus 759 L~~~g~~-----~~~~~~w~~~~~L~~~~v~f~~l~~laL~~~~~~~~~~~~~~~~~~~~ 813 (824)
|+.+|+. +..+|+|+|+||++||+++|++++++++.|++|..++++++..+..++
T Consensus 687 v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~ 746 (1391)
T KOG0065|consen 687 VSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKE 746 (1391)
T ss_pred EecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchh
Confidence 9998887 888999999999999999999999999999999999999987665544
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-107 Score=1031.50 Aligned_cols=654 Identities=29% Similarity=0.474 Sum_probs=548.5
Q ss_pred ChHHHHHHHhhhcccc--CCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccccCccccccccccee
Q 003389 114 DNEKFLKRIRHRTDRV--GIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVS 191 (824)
Q Consensus 114 ~~e~~~~~~~~~~~~~--~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~IL~~vs 191 (824)
|.+++++.++++.++. +++.++++|+|+||+|++ ...+...+||+.|.+.+......... ...+++++++||+|||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~iL~~vs 81 (1394)
T TIGR00956 4 NAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKL-KKFRDTKTFDILKPMD 81 (1394)
T ss_pred CHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHh-cccCCCCcceeeeCCE
Confidence 3444444333333333 444559999999999998 44566678999998877665333211 0123344577999999
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC-CCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCCCHHHHHHH
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-LRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMTVRETLDF 268 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~-~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~lTV~E~L~f 268 (824)
+.++|||+++|+||||||||||||+|+|+.++. ...+|+|.+||+++++.. .++.++||+|+|.|++.+||+|||.|
T Consensus 82 ~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f 161 (1394)
T TIGR00956 82 GLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDF 161 (1394)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHH
Confidence 999999999999999999999999999997421 125999999999875432 24569999999999999999999999
Q ss_pred hhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 003389 269 SGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQK 348 (824)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqr 348 (824)
+++++.+..+.. ...+.++ .+..++.+++.+||++++||+||++.+++||||||
T Consensus 162 ~~~~~~~~~~~~---~~~~~~~-----------------------~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 215 (1394)
T TIGR00956 162 AARCKTPQNRPD---GVSREEY-----------------------AKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGER 215 (1394)
T ss_pred HHHhCCCCCCCC---CCCHHHH-----------------------HHHHHHHHHHHcCcccccCceeCCCcCCCCCcccc
Confidence 987764321000 0001100 01134668999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecCh
Q 003389 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPR 428 (824)
Q Consensus 349 qRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~ 428 (824)
|||+||++|+.+|++|||||||+|||+.++.++++.|+++++..|+|+|+++|||+++++++||+|++|++|+++|+|++
T Consensus 216 kRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~ 295 (1394)
T TIGR00956 216 KRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPA 295 (1394)
T ss_pred hHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCH
Confidence 99999999999999999999999999999999999999999766899999999999999999999999999999999999
Q ss_pred hhHHHHHHHcCCCCCCCCCHHHHHHHhhcchhhhHHHhhcCCCCcCCChhHHHHHHhhchhhHHHHhhhcCCCCCC----
Q 003389 429 DNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKS---- 504 (824)
Q Consensus 429 ~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~---- 504 (824)
+++.+||+++||+||++.|+|||+++++++++ ++++...+. ....+.++|+++|++|+.++++.++++.+.++.
T Consensus 296 ~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~-~~~~~~~e~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 373 (1394)
T TIGR00956 296 DKAKQYFEKMGFKCPDRQTTADFLTSLTSPAE-RQIKPGYEK-KVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESD 373 (1394)
T ss_pred HHHHHHHHHcCCCCCCCCChHHHHHhccChhh-hhccccccc-cCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchh
Confidence 99999999999999999999999999998754 334322111 123578999999999998888777665432210
Q ss_pred -----------CCCCCcccccccCCcHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccc
Q 003389 505 -----------QAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGG 573 (824)
Q Consensus 505 -----------~~~~~~~~~~~~~~s~~~q~~~~~~R~~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~ 573 (824)
+..+.....++|..|+|+|+++|++|++++++||+.+++.|+++.+++|+++|++||+++.+.. +.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~---~~ 450 (1394)
T TIGR00956 374 TKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTS---DF 450 (1394)
T ss_pred hHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCch---hH
Confidence 0011122345789999999999999999999999999999999999999999999999986543 45
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHhhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhH
Q 003389 574 SRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAAS 653 (824)
Q Consensus 574 ~~~~g~lFf~~~~~~f~~~~~~~~~~~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~ 653 (824)
+.+.|++||++++++|+++++++.++.+||||+|||.+++|++++|++|++++++|+.++.+++|++|+|||+||+++++
T Consensus 451 ~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~ 530 (1394)
T TIGR00956 451 YSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAG 530 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHH
Q 003389 654 RFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVN 733 (824)
Q Consensus 654 ~Ff~~~l~l~l~~~~~~sl~~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~N 733 (824)
+||+|+++++++++++.++|+++++++||+.+|+.+++++++++++|+||++|+++||+||+|++|+||++||++|+++|
T Consensus 531 ~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~n 610 (1394)
T TIGR00956 531 RFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVN 610 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcccCC---CCCC---------CCc---------ccchhHHHHhh-cCCccCCcchhHHHHHHHHHHHHHHHHHHH
Q 003389 734 EFLGGRWDAQ---NKDP---------SIN---------QPTIGKVLLKI-RGFSTESNWYWIGVGALTGYSFLFNFLFIA 791 (824)
Q Consensus 734 Ef~~~~~~~~---~~~~---------~~~---------~~~~G~~~L~~-~g~~~~~~~~w~~~~~L~~~~v~f~~l~~l 791 (824)
||++..++|. +.++ ..| +.+.|+++|+. +|+. ..|+|+|+|+|++|+++|++++++
T Consensus 611 ef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~--~~~~w~n~gil~~~~v~f~~~~~l 688 (1394)
T TIGR00956 611 EFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYY--NSHKWRNFGIIIGFTVFFFFVYIL 688 (1394)
T ss_pred hhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcc--cchhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999884 1111 112 24689999985 5554 568999999999999999999999
Q ss_pred HHHhcCCcCCC
Q 003389 792 ALAYLNPIGDS 802 (824)
Q Consensus 792 aL~~~~~~~~~ 802 (824)
+++|+++....
T Consensus 689 ~l~~~~~~~~~ 699 (1394)
T TIGR00956 689 LTEFNKGAKQK 699 (1394)
T ss_pred HHHhccccCCC
Confidence 99999865544
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-100 Score=903.05 Aligned_cols=574 Identities=26% Similarity=0.465 Sum_probs=493.9
Q ss_pred ccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCC
Q 003389 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 181 ~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l 260 (824)
++++++|+|||++++|||+++|+|||||||||||++|+|+.+++...+|+|.+||++++....++.++||+|+|.+++.+
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 34577999999999999999999999999999999999998775456899999999876444467899999999999999
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc-
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM- 339 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~- 339 (824)
||+|||.|+++++.+.. +++.+ ....++++++.+||.+++||.||++.
T Consensus 115 TV~e~l~f~~~~~~~~~-------~~~~~------------------------~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRR-------VTKKE------------------------KRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCC-------CCHHH------------------------HHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 99999999987754311 01111 12246789999999999999999864
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.++|||||||||+||++|+.+|++|||||||+|||+.++.++++.|+++++ .|+|+|+++|||+.+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 789999999999999999999999999999999999999999999999986 4899999999999999999999999999
Q ss_pred CeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHhhcchhhhHHHhhcCCCCcCCChhHHHHHHhhchhhHHHHhhhcC
Q 003389 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV 499 (824)
Q Consensus 420 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~ 499 (824)
|+++|+|+++++.+||+++||+||++.|||||++++++.....+ .. ...+.+++.+.|++++.+++..+....
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSE-----NE--SRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccc-----cc--hHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 99999999999999999999999999999999999987542211 00 112345677888887776665544332
Q ss_pred CCCCCC---CCCCcccccccCCcHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhh
Q 003389 500 PYDKSQ---AHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRY 576 (824)
Q Consensus 500 ~~~~~~---~~~~~~~~~~~~~s~~~q~~~~~~R~~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~~ 576 (824)
..+... .........+|..+++.|+++|++|+++..+||+.++..|+++.+++|+++|++|++++.+.. +.+.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~---~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQK---GVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHH---HHHHH
Confidence 111100 001111234678899999999999999999999999999999999999999999999986543 45678
Q ss_pred HHHHHHHHHHHHHhhH-HHHHHHhhhhhHHHHHhhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHH
Q 003389 577 FGALFFSLLNIMFNGF-AENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRF 655 (824)
Q Consensus 577 ~g~lFf~~~~~~f~~~-~~~~~~~~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~F 655 (824)
.|++||++++++|.++ ..++.+..+|+||+|||.+++|++++|++|++++++|+.++.+++|++|+|||+|+++++.+|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 9999999998888865 556777799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhh
Q 003389 656 FKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEF 735 (824)
Q Consensus 656 f~~~l~l~l~~~~~~sl~~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf 735 (824)
|.|+++++++++++.++++++++++||..+|+.+++++++++++|+||+++.++||+||+|++|+||++||++|+++|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-cCCCCCCCCcccchhHHHHhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003389 736 LGGRW-DAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNP 798 (824)
Q Consensus 736 ~~~~~-~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~~L~~~~v~f~~l~~laL~~~~~ 798 (824)
.+..+ .|...+....|...|+++|+.+|++.+ ++|.++++|++|+++|+++++++|++...
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~~~ 614 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIRIR 614 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99876 453222111245679999999999764 46999999999999999999999998543
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-98 Score=892.96 Aligned_cols=610 Identities=20% Similarity=0.334 Sum_probs=480.8
Q ss_pred CCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHH
Q 003389 133 IPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT 212 (824)
Q Consensus 133 ~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKST 212 (824)
.+.++++|.++++.+.......+... ....+...-...++.+.+ +++++|+|||++++|||+++|+|||||||||
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~-~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKST 109 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSN----IKRILGHKPKISDETRQI-QERTILNGVTGMASPGEILAVLGPSGSGKST 109 (659)
T ss_pred CCceEEEEEeEEEEEccCCCcccccc----cccccccccccccccccC-CCCeeeeCCEEEEECCEEEEEECCCCCCHHH
Confidence 45789999999988643210111100 011111101112222222 3567999999999999999999999999999
Q ss_pred HHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhc
Q 003389 213 LMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA 292 (824)
Q Consensus 213 LL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~ 292 (824)
||++|+|+++++ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.... .++.+
T Consensus 110 LL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~-------~~~~~--- 177 (659)
T PLN03211 110 LLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS-------LTKQE--- 177 (659)
T ss_pred HHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-------CCHHH---
Confidence 999999998773 2589999999987542 24569999999999999999999999875542110 00000
Q ss_pred CCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCC
Q 003389 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372 (824)
Q Consensus 293 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsG 372 (824)
....++++++.+||++++||++|+...++|||||||||+||++|+.+|++|||||||+|
T Consensus 178 ---------------------~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 178 ---------------------KILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred ---------------------HHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 11246779999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 003389 373 LDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (824)
Q Consensus 373 LDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (824)
||+.++.++++.|+++++ .|+|+|+++|||..+++++||++++|++|+++|+|+++++.+||+++||+||++.|||||+
T Consensus 237 LD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ 315 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315 (659)
T ss_pred cCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHH
Confidence 999999999999999987 5899999999999889999999999999999999999999999999999999999999999
Q ss_pred HHhhcchhhhHHHhhcCCCCcCCChhHHHHHHhhchhhHHHHhhhcC---CCCCCC-----CCCC-cccccccCCcHHHH
Q 003389 453 QEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV---PYDKSQ-----AHPA-SLVKEKYGISKWEL 523 (824)
Q Consensus 453 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~---~~~~~~-----~~~~-~~~~~~~~~s~~~q 523 (824)
+++++...+.+.....+.+ ...+++.+.|++.. .+...+.... +.+..+ ..+. ......+..++|+|
T Consensus 316 ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 391 (659)
T PLN03211 316 LDLANGVCQTDGVSEREKP---NVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQ 391 (659)
T ss_pred HHHcCccccCCCccccccc---hHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHH
Confidence 9999864321100000111 11234455564321 1111111110 000000 0000 01112355789999
Q ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhhHHHHHHHHHHHHH-hhHHHHHHHhhhh
Q 003389 524 FRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMF-NGFAENAMTVLRL 602 (824)
Q Consensus 524 ~~~~~~R~~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~~~g~lFf~~~~~~f-~~~~~~~~~~~~~ 602 (824)
+++|++|++++ +||+.+...|+++.+++|+++|++||+++ . .+.+++.|++||++++.++ +.++.++.++.+|
T Consensus 392 ~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~---~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er 465 (659)
T PLN03211 392 FSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--F---RDVQDRLGLLFFISIFWGVFPSFNSVFVFPQER 465 (659)
T ss_pred HHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999988 78888888999999999999999999985 2 3457789999999888665 4578888889999
Q ss_pred hHHHHHhhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHccCc
Q 003389 603 PIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRT 682 (824)
Q Consensus 603 ~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl~~~iaa~~~~ 682 (824)
+||+|||.+++|++++|++|++++++|+.++.+++|++|+|||+||++++++||.|++++++++++++++|+++++++||
T Consensus 466 ~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~ 545 (659)
T PLN03211 466 AIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545 (659)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhhcCCc-----ccCCCCCCCCcccchhHH
Q 003389 683 EVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGR-----WDAQNKDPSINQPTIGKV 757 (824)
Q Consensus 683 ~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf~~~~-----~~~~~~~~~~~~~~~G~~ 757 (824)
+.+|+++++++++++++||||+++ +||+||+|++|+||++||++|+++|||.+.+ +.|..+. |....+..
T Consensus 546 ~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~---~~~~~~c~ 620 (659)
T PLN03211 546 AKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPH---GSDRASCK 620 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcc---cCCCCCCc
Confidence 999999999999999999999997 7999999999999999999999999998654 2443221 11111122
Q ss_pred HHhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003389 758 LLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNP 798 (824)
Q Consensus 758 ~L~~~g~~~~~~~~w~~~~~L~~~~v~f~~l~~laL~~~~~ 798 (824)
++...++.. ..+|.++++|++++++|+++++++|+++++
T Consensus 621 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~ 659 (659)
T PLN03211 621 FVEEDVAGQ--ISPATSVSVLIFMFVGYRLLAYLALRRIKH 659 (659)
T ss_pred cchhhhhcc--cchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 343333332 347999999999999999999999998763
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-99 Score=889.63 Aligned_cols=587 Identities=29% Similarity=0.505 Sum_probs=499.9
Q ss_pred CCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHH
Q 003389 133 IPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT 212 (824)
Q Consensus 133 ~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKST 212 (824)
...+++.|+++++..... .. ..+++|+||||+++|||++||||||||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~----------------------------~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK----------------------------SK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC----------------------------CC-ccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 346789999998875321 01 3578999999999999999999999999999
Q ss_pred HHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhc
Q 003389 213 LMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA 292 (824)
Q Consensus 213 LL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~ 292 (824)
||++|+|+...+...+|+|++||++.+....++.+|||.|+|.++|++||+|+|.|+|+++.+.. +++.+|
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~~~~~k-- 142 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------LSKEEK-- 142 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------CCHHHH--
Confidence 99999999987667899999999887766678899999999999999999999999999875431 222222
Q ss_pred CCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCC
Q 003389 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372 (824)
Q Consensus 293 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsG 372 (824)
..+++++++.|||.+|+||++|+...||+||||||||+||..|+.+|++|||||||||
T Consensus 143 ----------------------~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 143 ----------------------RERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred ----------------------HHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 3468899999999999999999998899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 003389 373 LDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (824)
Q Consensus 373 LDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (824)
||+.++.++++.|+++|++ |+|||+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999997 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchhhhHHHhhcCCCCcCCChhHHHHHHh-hchhhHHHHhhhcCCCCCCCCCCCcccccccCCcHHHHHHHHHHHH
Q 003389 453 QEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFK-SFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFARE 531 (824)
Q Consensus 453 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~R~ 531 (824)
.++.+..++.+.-.+. .......+.++ .....+... ......... .+. ......++|.|+..+++|.
T Consensus 280 l~l~s~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~---~~~~~~s~~~q~~~L~~R~ 347 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEEA------VRIAKLINKFSQTDNLKKTLE-ALEKSLSTS--KKV---EIGTSPSWWTQFKILLKRS 347 (613)
T ss_pred HHHHccCCCchhHHhH------HHHHHHhhhccccchhhhhHH-HHhhhcccc--ccc---ccccCCcHHHHHHHHHHHH
Confidence 9998843111000000 00011111111 110111110 000000000 000 0111689999999999999
Q ss_pred HHHHhhChhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhhHHHHHHHHHHHHHhhHH-HHHHHhhhhhHHHHHhh
Q 003389 532 WLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFA-ENAMTVLRLPIFYKQRD 610 (824)
Q Consensus 532 ~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~~~g~lFf~~~~~~f~~~~-~~~~~~~~~~vf~ker~ 610 (824)
+++++||+.++..|.+|.+++|+++|++||+++.+...+ +++.|++||.+.++.|..+. .++.++.++++|.||+.
T Consensus 348 ~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~---~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~ 424 (613)
T KOG0061|consen 348 LKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGI---QNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETS 424 (613)
T ss_pred hHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHH---HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHh
Confidence 999999999999999999999999999999998665544 46899999999988777655 68899999999999999
Q ss_pred cCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHccCchHHHHHHH
Q 003389 611 HLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLG 690 (824)
Q Consensus 611 ~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl~~~iaa~~~~~~~A~~~~ 690 (824)
+++|+.++|++|+.+.++|+.++.+++|++|+|||+|++++..+|++|++++++..+++.+++.+++++.+|...|++++
T Consensus 425 ~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~ 504 (613)
T KOG0061|consen 425 SGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLG 504 (613)
T ss_pred cCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhhcCCcccCCCCCCCCcccchhHHHHhhcCCccCCcc
Q 003389 691 TFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNW 770 (824)
Q Consensus 691 ~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf~~~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~ 770 (824)
+++++++++||||+++.++||+||+|++|+|+++|++||+++|||.+....|...++ .++...|.++|+..++...+
T Consensus 505 ~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-- 581 (613)
T KOG0061|consen 505 PVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGN-LCCESTGEDVLKQLGFEDSS-- 581 (613)
T ss_pred HHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcC-CcccccHHHHHHhcCCcccc--
Confidence 999999999999999999999999999999999999999999999974334432221 26788999999999998755
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003389 771 YWIGVGALTGYSFLFNFLFIAALAYLNP 798 (824)
Q Consensus 771 ~w~~~~~L~~~~v~f~~l~~laL~~~~~ 798 (824)
+|.++.++++++++|+++++++|++..+
T Consensus 582 ~~~~l~~l~~~~~~~~il~y~~L~~~~~ 609 (613)
T KOG0061|consen 582 FWLDLLVLLAFIVFFRVLGYLALRFRVK 609 (613)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6899999999999999999999998765
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-97 Score=938.60 Aligned_cols=596 Identities=22% Similarity=0.400 Sum_probs=508.1
Q ss_pred CCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcH
Q 003389 131 IEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGK 210 (824)
Q Consensus 131 ~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGK 210 (824)
++...+.+.|+|+++.++...+.+ +. ....+++++|+|||+.++||++++|+|||||||
T Consensus 861 ~~~~~~~~~~~~v~y~v~~~~~~~--------------------~~-~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGK 919 (1470)
T PLN03140 861 LPFTPLAMSFDDVNYFVDMPAEMK--------------------EQ-GVTEDRLQLLREVTGAFRPGVLTALMGVSGAGK 919 (1470)
T ss_pred cCCCcceEEEEEEEEEEccCcccc--------------------cc-ccCcCCceEeeCcEEEEECCeEEEEECCCCCCH
Confidence 345567899999999875431100 00 111234579999999999999999999999999
Q ss_pred HHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHH
Q 003389 211 TTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 290 (824)
Q Consensus 211 STLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~ 290 (824)
|||||+|+|+.++. ..+|+|.+||++.+....++.+|||+|+|.|++.+||+|||.|++.++.+.. .++.+
T Consensus 920 TTLL~~LaG~~~~g-~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~-------~~~~~- 990 (1470)
T PLN03140 920 TTLMDVLAGRKTGG-YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKE-------VSKEE- 990 (1470)
T ss_pred HHHHHHHcCCCCCC-cccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCC-------CCHHH-
Confidence 99999999997642 4689999999887543345779999999999999999999999876542210 00000
Q ss_pred hcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCC
Q 003389 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIS 370 (824)
Q Consensus 291 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPT 370 (824)
....++++++.+||.+++|+.||+..+++|||||||||+||++|+.+|++|||||||
T Consensus 991 -----------------------~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPT 1047 (1470)
T PLN03140 991 -----------------------KMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPT 1047 (1470)
T ss_pred -----------------------HHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 112467899999999999999998888899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC-CeEEEecCh----hhHHHHHHHc-CC-CCC
Q 003389 371 TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE-GQIVYQGPR----DNVLEFFEHM-GF-KCP 443 (824)
Q Consensus 371 sGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~-G~iv~~G~~----~~~~~~f~~~-G~-~~p 443 (824)
+|||+.++..+++.|+++++ .|+|+|+++|||+.++++.||++++|++ |+++|+|+. +++.+||+++ |+ +||
T Consensus 1048 sgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p 1126 (1470)
T PLN03140 1048 SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIK 1126 (1470)
T ss_pred CCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCC
Confidence 99999999999999999987 4899999999999889999999999996 899999996 5899999997 66 499
Q ss_pred CCCCHHHHHHHhhcchhhhHHHhhcCCCCcCCChhHHHHHHhhchhhHHHHhhhc---CCCCCCCCCCCcccccccCCcH
Q 003389 444 ERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLR---VPYDKSQAHPASLVKEKYGISK 520 (824)
Q Consensus 444 ~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~s~ 520 (824)
+..|||||++|+++..... ....++++.|++|+.+++..+++. .+.+. .+......+|..++
T Consensus 1127 ~~~NPAd~~l~v~~~~~~~------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~ 1191 (1470)
T PLN03140 1127 EKYNPATWMLEVSSLAAEV------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPG---ASDLYFATQYSQST 1191 (1470)
T ss_pred CCCCchhhhhhhhcccccc------------cccchHHHHHhccHHHHHHHHHHHHhccCCCC---ccccccCccccCCH
Confidence 9999999999998753211 112478999999988877654442 22111 11112245789999
Q ss_pred HHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhhHHHHHHHHHHHHHhhHH-HHHHHh
Q 003389 521 WELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFA-ENAMTV 599 (824)
Q Consensus 521 ~~q~~~~~~R~~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~~~g~lFf~~~~~~f~~~~-~~~~~~ 599 (824)
|.|+++|++|+++.+|||+.++..|+++.+++|+++|++||+++.+.+++++.++++|++|+++++++++... .+|.+.
T Consensus 1192 ~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~ 1271 (1470)
T PLN03140 1192 WGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVA 1271 (1470)
T ss_pred HHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987777778888899999999988886654 457777
Q ss_pred hhhhHHHHHhhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHc
Q 003389 600 LRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAV 679 (824)
Q Consensus 600 ~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl~~~iaa~ 679 (824)
.+|+||+|||.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.+++.++|++++++
T Consensus 1272 ~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~ 1351 (1470)
T PLN03140 1272 VERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSL 1351 (1470)
T ss_pred HHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhhcCCcccCCCCCCCCcccchhHHH-
Q 003389 680 GRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVL- 758 (824)
Q Consensus 680 ~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf~~~~~~~~~~~~~~~~~~~G~~~- 758 (824)
+||..+|+.+++++++++++||||++|+++||+||+|+||+||++|+++|+++|||.+....|.+++. .+...|.++
T Consensus 1352 ~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~--~~~~~~~~~~ 1429 (1470)
T PLN03140 1352 TPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGG--APDPTIKWYI 1429 (1470)
T ss_pred CCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCC--CCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998777655541 112356666
Q ss_pred HhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 003389 759 LKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPI 799 (824)
Q Consensus 759 L~~~g~~~~~~~~w~~~~~L~~~~v~f~~l~~laL~~~~~~ 799 (824)
++.+|+.. .|.|++++++++|+++|.++++++++++|+.
T Consensus 1430 ~~~~g~~~--~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q 1468 (1470)
T PLN03140 1430 QDHYGYDP--DFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQ 1468 (1470)
T ss_pred HHhcCcCc--ccccchhhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 67889875 4689999999999999999999999999974
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-91 Score=885.45 Aligned_cols=564 Identities=25% Similarity=0.366 Sum_probs=477.2
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
++++|+|||+.|+|||+++|+||||||||||||+|+|+.++....+|+|.+||+++.. ..++.++||+|+|.+++.+||
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCH
Confidence 4579999999999999999999999999999999999987432347999999998853 346789999999999999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+|||.|+++++.+.. .++.+ ....++++++.+||.+++|+.||+. ..+
T Consensus 854 ~E~L~~~a~l~~~~~-------~~~~~------------------------~~~~v~~~l~~l~L~~~~d~~v~~~-~~~ 901 (1394)
T TIGR00956 854 RESLRFSAYLRQPKS-------VSKSE------------------------KMEYVEEVIKLLEMESYADAVVGVP-GEG 901 (1394)
T ss_pred HHHHHHHHHhCCCCC-------CCHHH------------------------HHHHHHHHHHHcCChhhCCCeeCCC-CCC
Confidence 999999887653210 00001 1124678999999999999999964 347
Q ss_pred CCHHHHHHHHHHHHHHcCCc-EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC-
Q 003389 343 ISGGQKKRVTTGEMLVGTAN-VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG- 420 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~-iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G- 420 (824)
|||||||||+||++|+.+|+ +|||||||+|||+.++..|++.|+++++ .|+|+|+++|||...+++.||++++|++|
T Consensus 902 LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG 980 (1394)
T TIGR00956 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGG 980 (1394)
T ss_pred CCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCC
Confidence 99999999999999999997 9999999999999999999999999986 58999999999998788999999999997
Q ss_pred eEEEecCh----hhHHHHHHHcCC-CCCCCCCHHHHHHHhhcchhhhHHHhhcCCCCcCCChhHHHHHHhhchhhHHHHh
Q 003389 421 QIVYQGPR----DNVLEFFEHMGF-KCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIAS 495 (824)
Q Consensus 421 ~iv~~G~~----~~~~~~f~~~G~-~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 495 (824)
+++|+|+. +++.+||+++|+ +||++.|||||++|+++...... ...++.+.|+.|+..++..+
T Consensus 981 ~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~------------~~~~~~~~~~~s~~~~~~~~ 1048 (1394)
T TIGR00956 981 QTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH------------ANQDYHEVWRNSSEYQAVKN 1048 (1394)
T ss_pred EEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc------------hhccHHHHHhcCHHHHHHHH
Confidence 99999997 578999999996 99999999999999987532110 12356778888777666554
Q ss_pred hhcC---CCCCCCCCCCcccccccCCcHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhhhccccCCCCCccc
Q 003389 496 DLRV---PYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNG 572 (824)
Q Consensus 496 ~l~~---~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~R~~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~ 572 (824)
+++. +.............++|+.|+|.|++.|++|+++.+|||+.++..|+++.+++|+++|++||+++.+. ++
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~---~~ 1125 (1394)
T TIGR00956 1049 ELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSL---QG 1125 (1394)
T ss_pred HHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCH---HH
Confidence 3322 11111110011123568999999999999999999999999999999999999999999999998654 45
Q ss_pred chhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHH-HHHhhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCch
Q 003389 573 GSRYFGALFFSLLNIMFNGFAENAMTVLRLPIF-YKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPA 651 (824)
Q Consensus 573 ~~~~~g~lFf~~~~~~f~~~~~~~~~~~~~~vf-~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~ 651 (824)
.++++|++|+.+++..+.....++.++.+|++| +|||.+++|++++|++|++++|+|+.++.+++|.+|+|||+||+++
T Consensus 1126 i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~ 1205 (1394)
T TIGR00956 1126 LQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWN 1205 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCc
Confidence 678899999988776665556667777877775 9999999999999999999999999999999999999999999988
Q ss_pred hHH-------HHHHHHHHHHHHHhHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHH
Q 003389 652 ASR-------FFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMM 724 (824)
Q Consensus 652 ~~~-------Ff~~~l~l~l~~~~~~sl~~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~ 724 (824)
+.. ||+|+++++++.+++.+++.++++++|+..+|+.+++++++++++||||++++++||+||+|++|+||++
T Consensus 1206 ~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~ 1285 (1394)
T TIGR00956 1206 ASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFT 1285 (1394)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHH
Confidence 765 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCcccCCC--------CCC---------------------------CCcccchhHHHHhhcCCccCCc
Q 003389 725 YGQTSLLVNEFLGGRWDAQN--------KDP---------------------------SINQPTIGKVLLKIRGFSTESN 769 (824)
Q Consensus 725 Ya~~al~~NEf~~~~~~~~~--------~~~---------------------------~~~~~~~G~~~L~~~g~~~~~~ 769 (824)
|+++|++.|||.+....|.. |.+ .+|....|+++|+.+|+..++
T Consensus 1286 y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~- 1364 (1394)
T TIGR00956 1286 YLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSG- 1364 (1394)
T ss_pred HHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccc-
Confidence 99999999999998776632 111 123367999999999997655
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003389 770 WYWIGVGALTGYSFLFNFLFIAALAYLNP 798 (824)
Q Consensus 770 ~~w~~~~~L~~~~v~f~~l~~laL~~~~~ 798 (824)
+|+|+|++++|++++ ++++++|.|..+
T Consensus 1365 -~w~~~~i~~~~~~~~-~~~~~~l~~~~r 1391 (1394)
T TIGR00956 1365 -RWRNFGIFIAFIFFN-IIATVFFYWLAR 1391 (1394)
T ss_pred -cccchhhhhHHHHHH-HHHHHhhheEEE
Confidence 699999999997666 888899988743
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-92 Score=838.31 Aligned_cols=564 Identities=26% Similarity=0.409 Sum_probs=486.7
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
+++++|+||||.++||.+|||||+|||||||||++|||+... ..++|+|++||.+.++...+|.+|||.|+|.|.+++|
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence 567899999999999999999999999999999999999765 3679999999999986667899999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|||.|.|+|.+|.+. ++...+| ...+|++++.++|++++|.+||+.. .
T Consensus 881 VrESL~fSA~LRlp~-------~v~~~ek------------------------~~yVe~Vi~lleL~~~~daiVG~~G-~ 928 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPK-------EVSDEEK------------------------YEYVEEVIELLELKEYADALVGLPG-S 928 (1391)
T ss_pred hHHHHHHHHHHcCCC-------cCCHHHH------------------------HHHHHHHHHHhCchhhhhhhccCCC-C
Confidence 999999999887542 1122221 2458899999999999999999877 9
Q ss_pred CCCHHHHHHHHHHHHHHcCC-cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC-
Q 003389 342 GISGGQKKRVTTGEMLVGTA-NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE- 419 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p-~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~- 419 (824)
|||.+||||++||.+|+.+| .||||||||||||+.++..|++.+|++++ .|.||+|+||||+.++++.||++++|.+
T Consensus 929 GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrG 1007 (1391)
T KOG0065|consen 929 GLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRG 1007 (1391)
T ss_pred CCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcC
Confidence 99999999999999999999 99999999999999999999999999998 6999999999999999999999999975
Q ss_pred CeEEEecChh----hHHHHHHHcC-CCCCCCCCHHHHHHHhhcchhhhHHHhhcCCCCcCCChhHHHHHHhhchhhHHHH
Q 003389 420 GQIVYQGPRD----NVLEFFEHMG-FKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIA 494 (824)
Q Consensus 420 G~iv~~G~~~----~~~~~f~~~G-~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 494 (824)
|++||.||.. .+++||++.| .+||+..|||||++|+++...+.+ ...++++.|++|+.++++.
T Consensus 1008 GqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~------------~~~D~a~~w~~S~e~k~~~ 1075 (1391)
T KOG0065|consen 1008 GQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS------------LSVDFAEIWKNSEEYKRNK 1075 (1391)
T ss_pred CeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccc------------cCccHHHHHhccHHHHHHH
Confidence 8999999974 5778999987 999999999999999997653321 1238999999999998887
Q ss_pred hhh---cCCCCCCCCCCCcccccccCCcHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 003389 495 SDL---RVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMN 571 (824)
Q Consensus 495 ~~l---~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~R~~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~ 571 (824)
+++ +.|.+. .......+++|+.|+|.|++.|++|+++..||+|.+...|++.+++.|+++|+.||+.+ .+++
T Consensus 1076 e~v~~l~~~~~~--~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g---~~~q 1150 (1391)
T KOG0065|consen 1076 ELVKELSQPPPG--FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVG---HNVQ 1150 (1391)
T ss_pred HHHHHHhcCCcc--CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecC---CcHH
Confidence 654 444433 12333445679999999999999999999999999999999999999999999999998 3567
Q ss_pred cchhhHHHHHHHHHHHHHh-hHHHHHHHhhhhhHHHHHhhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCc
Q 003389 572 GGSRYFGALFFSLLNIMFN-GFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDP 650 (824)
Q Consensus 572 ~~~~~~g~lFf~~~~~~f~-~~~~~~~~~~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~ 650 (824)
+.++.+|++|.++++..-+ +-...+..-.|+-+|||||..++|++.+|++|++++|+|+.++++++|.+++||++||..
T Consensus 1151 ~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~ 1230 (1391)
T KOG0065|consen 1151 GLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYW 1230 (1391)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchh
Confidence 7788999999887765443 223445556799999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHH
Q 003389 651 AASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSL 730 (824)
Q Consensus 651 ~~~~Ff~~~l~l~l~~~~~~sl~~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al 730 (824)
++.+|+.|++..++..+....+|+++.+++||..+|+.+.++++.++.+||||++|++.||.||+|+||+||+.|-.+++
T Consensus 1231 ~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gl 1310 (1391)
T KOG0065|consen 1231 TASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGL 1310 (1391)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcccCCCCCCC----CcccchhHHHHhhcC----CccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003389 731 LVNEFLGGRWDAQNKDPS----INQPTIGKVLLKIRG----FSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNP 798 (824)
Q Consensus 731 ~~NEf~~~~~~~~~~~~~----~~~~~~G~~~L~~~g----~~~~~~~~w~~~~~L~~~~v~f~~l~~laL~~~~~ 798 (824)
+.-++++..-.|...+.. .+..+.|+.+-..+| +..+..-+ ...+..+|.+.+.+++.+.++|.+.
T Consensus 1311 i~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~--~~c~~c~y~v~~~~l~~f~~~y~~~ 1384 (1391)
T KOG0065|consen 1311 ISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLAT--TACVYCAYTVADAFLAAFNIKYLNF 1384 (1391)
T ss_pred HHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcce--eEEEEeeeehHHHHHHHHHHHHHHH
Confidence 999999876555322100 134566776666677 54433222 2234556888888888888888764
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=384.24 Aligned_cols=222 Identities=26% Similarity=0.399 Sum_probs=190.0
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC----CCCceEEEEecCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF----VPQRTCAYISQHDLHH 257 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~----~~~~~i~yv~Q~d~~~ 257 (824)
++..+|+|||++|++||+++|+|||||||||||+||.|+..++ +|+|.++|.++... ..++.+|+|+|+..+|
T Consensus 13 g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLF 89 (240)
T COG1126 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLF 89 (240)
T ss_pred CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeeccccccc
Confidence 4678999999999999999999999999999999999999997 99999999766421 2357899999999999
Q ss_pred CCCCHHHHHHHhhhh-cCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 258 GEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
|++||.||+..+... ++. ++. +......++|+.+||.+.+|.++.
T Consensus 90 PHlTvleNv~lap~~v~~~----------~k~------------------------eA~~~A~~lL~~VGL~~ka~~yP~ 135 (240)
T COG1126 90 PHLTVLENVTLAPVKVKKL----------SKA------------------------EAREKALELLEKVGLADKADAYPA 135 (240)
T ss_pred ccchHHHHHHhhhHHHcCC----------CHH------------------------HHHHHHHHHHHHcCchhhhhhCcc
Confidence 999999999987431 111 111 112245678999999999998766
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
.|||||||||+|||||+.+|+++++|||||+|||....++++.++++++ .|.|+|+++|. ..-+.+.+|||+.
T Consensus 136 -----qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTHE-M~FAr~VadrviF 208 (240)
T COG1126 136 -----QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHE-MGFAREVADRVIF 208 (240)
T ss_pred -----ccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEech-hHHHHHhhheEEE
Confidence 5999999999999999999999999999999999999999999999997 58999998764 5577889999999
Q ss_pred EcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHh
Q 003389 417 LSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 455 (824)
|++|+++.+|+++++ |..|.+.-..+||..+
T Consensus 209 md~G~iie~g~p~~~--------f~~p~~~R~~~FL~~i 239 (240)
T COG1126 209 MDQGKIIEEGPPEEF--------FDNPKSERTRQFLSKI 239 (240)
T ss_pred eeCCEEEEecCHHHH--------hcCCCCHHHHHHHHhh
Confidence 999999999999877 5678777788887653
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-46 Score=387.93 Aligned_cols=225 Identities=27% Similarity=0.361 Sum_probs=198.1
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLH 256 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d~~ 256 (824)
...+|+|||++|++|++.+|+|.||||||||++++.++..|+ +|+|.++|+++.... .++.||+|+|+..+
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnL 94 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNL 94 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEeccccc
Confidence 456999999999999999999999999999999999999998 999999998886543 24789999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
+...||.||++|..+..+.. +.+ ...++.++|+.+||++.+|..+.
T Consensus 95 LssrTV~~NvA~PLeiag~~----------k~e------------------------i~~RV~elLelVgL~dk~~~yP~ 140 (339)
T COG1135 95 LSSRTVFENVAFPLELAGVP----------KAE------------------------IKQRVAELLELVGLSDKADRYPA 140 (339)
T ss_pred cccchHHhhhhhhHhhcCCC----------HHH------------------------HHHHHHHHHHHcCChhhhccCch
Confidence 99999999999998876642 111 22357889999999999987766
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
.|||||||||+|||||+.+|++||+|||||+|||.|+..|++.|+++.++.|.|++++.|+ .+-+.++||||.+
T Consensus 141 -----qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHE-m~Vvk~ic~rVav 214 (339)
T COG1135 141 -----QLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHE-MEVVKRICDRVAV 214 (339)
T ss_pred -----hcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEech-HHHHHHHhhhheE
Confidence 4999999999999999999999999999999999999999999999999999999998766 4578889999999
Q ss_pred EcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHhhcc
Q 003389 417 LSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSK 458 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~ 458 (824)
|++|+++++|+..++ |..|.+.-...|+.+....
T Consensus 215 m~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~~~ 248 (339)
T COG1135 215 LDQGRLVEEGTVSEV--------FANPKHAITQEFIGETLEI 248 (339)
T ss_pred eeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhccc
Confidence 999999999999888 4568777777777766543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=398.03 Aligned_cols=217 Identities=29% Similarity=0.408 Sum_probs=195.8
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCHHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV~E 264 (824)
+|+|||++|++||+++|+|||||||||||++|||+.+|+ +|+|.++|++++...| +|.+|+|+|+..++|+|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 999999999999999999999999999999999999997 9999999999998776 488999999999999999999
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
|+.|+.+.++... .+ ...+++++.+.|+|++..|+++. +||
T Consensus 95 Niaf~Lk~~~~~k--------------------~e--------------i~~rV~eva~~L~l~~lL~r~P~-----~LS 135 (338)
T COG3839 95 NIAFGLKLRGVPK--------------------AE--------------IDKRVKEVAKLLGLEHLLNRKPL-----QLS 135 (338)
T ss_pred HhhhhhhhCCCch--------------------HH--------------HHHHHHHHHHHcCChhHHhcCcc-----cCC
Confidence 9999988776421 11 12357788999999999998765 599
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEE
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~ 424 (824)
|||||||+|||||+.+|++++||||+|+||...+.++...|+++.++.+.|+|.++| +..|+..++|||.+|++|+|..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTH-Dq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTH-DQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcC-CHHHHHhhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999999999999888889888765 5568999999999999999999
Q ss_pred ecChhhHHHHHHHcCCCCCCCCCHHHHHH
Q 003389 425 QGPRDNVLEFFEHMGFKCPERKGVADFLQ 453 (824)
Q Consensus 425 ~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 453 (824)
.|++.++ |..|.+.-+|+|+-
T Consensus 215 ~g~p~el--------y~~P~n~fVA~FiG 235 (338)
T COG3839 215 VGTPLEL--------YERPANLFVAGFIG 235 (338)
T ss_pred cCChHHH--------hhCccchhhhhhcC
Confidence 9999998 56788888888863
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-45 Score=393.21 Aligned_cols=221 Identities=31% Similarity=0.452 Sum_probs=188.8
Q ss_pred ccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--CCCceEEEEec
Q 003389 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQ 252 (824)
Q Consensus 175 ~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~i~yv~Q 252 (824)
++.+.+..++.+|+||||+|++|+++||+||||||||||+|+|+|+..|+ +|+|.++|.+.... ..++.+||++|
T Consensus 9 ~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~ 85 (293)
T COG1131 9 NLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQ 85 (293)
T ss_pred ceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEcc
Confidence 34333332578999999999999999999999999999999999999997 99999999887642 23578999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccc
Q 003389 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d 332 (824)
++.+++.+||+|||.|.+++++.... .....++++++.+||++..+
T Consensus 86 ~~~~~~~lT~~e~l~~~~~l~~~~~~----------------------------------~~~~~~~~~l~~~~L~~~~~ 131 (293)
T COG1131 86 EPSLYPELTVRENLEFFARLYGLSKE----------------------------------EAEERIEELLELFGLEDKAN 131 (293)
T ss_pred CCCCCccccHHHHHHHHHHHhCCChh----------------------------------HHHHHHHHHHHHcCCchhhC
Confidence 99999999999999999988765210 01124678999999998555
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
++++ +||+||||||+||.||+.+|++|||||||+|||+.++.++.+.|+++++..++||++++|++ .++..+||
T Consensus 132 ~~~~-----~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d 205 (293)
T COG1131 132 KKVR-----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCD 205 (293)
T ss_pred cchh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCC
Confidence 5554 59999999999999999999999999999999999999999999999986457888887654 58889999
Q ss_pred eEEEEcCCeEEEecChhhHHHHHHHc
Q 003389 413 DIILLSEGQIVYQGPRDNVLEFFEHM 438 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~~~f~~~ 438 (824)
+|++|++|++++.|+.+++...+...
T Consensus 206 ~v~il~~G~~~~~g~~~~l~~~~~~~ 231 (293)
T COG1131 206 RVIILNDGKIIAEGTPEELKEKFGGK 231 (293)
T ss_pred EEEEEeCCEEEEeCCHHHHHHhhccC
Confidence 99999999999999999887765543
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-45 Score=396.53 Aligned_cols=223 Identities=29% Similarity=0.413 Sum_probs=199.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lT 261 (824)
+..+|+|||++|++||+++|+|||||||||||++|||+..|+ +|+|.++|++++...+ +|.+++|+|+..+||+||
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHlt 93 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMT 93 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCc
Confidence 678999999999999999999999999999999999999998 9999999999998766 588999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.|+.+.++.. ++.+ ...+++++|+.++|++.++.++.
T Consensus 94 V~~NVafGLk~~~~~-------------------~~~~--------------i~~rv~e~L~lV~L~~~~~R~p~----- 135 (352)
T COG3842 94 VEENVAFGLKVRKKL-------------------KKAE--------------IKARVEEALELVGLEGFADRKPH----- 135 (352)
T ss_pred HHHHhhhhhhhcCCC-------------------CHHH--------------HHHHHHHHHHHcCchhhhhhChh-----
Confidence 999999998743311 0111 12357889999999998887765
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||++||||+.+|++||||||.|+||..-+.++..-|+++.++.|.|.|+++| +..|.+.++|||.+|++|+
T Consensus 136 qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTH-DqeEAl~msDrI~Vm~~G~ 214 (352)
T COG3842 136 QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTH-DQEEALAMSDRIAVMNDGR 214 (352)
T ss_pred hhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEEC-CHHHHhhhccceEEccCCc
Confidence 599999999999999999999999999999999999999999999999999999999765 5668999999999999999
Q ss_pred EEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHh
Q 003389 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (824)
Q Consensus 422 iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 455 (824)
|...|+++++ |..|...-+|||+-+.
T Consensus 215 I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 215 IEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred eeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 9999999998 5689888899998754
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=377.89 Aligned_cols=211 Identities=29% Similarity=0.438 Sum_probs=182.9
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~ 259 (824)
++.||+|+||+|++|++++|+||||||||||||+|+|+++|. +|+|.++|+++..... .+.++||||.....+.
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~ 90 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence 567999999999999999999999999999999999999997 9999999999987654 4789999999988899
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+|.+.++..-+... ... +. .++...++..|+.+|+.+.+++.+.+
T Consensus 91 ~tV~d~V~~GR~p~~~~-----~~~-----------~~--------------~~D~~~v~~aL~~~~~~~la~r~~~~-- 138 (258)
T COG1120 91 LTVYELVLLGRYPHLGL-----FGR-----------PS--------------KEDEEIVEEALELLGLEHLADRPVDE-- 138 (258)
T ss_pred cEEeehHhhcCCccccc-----ccC-----------CC--------------HhHHHHHHHHHHHhCcHHHhcCcccc--
Confidence 99999998874321100 000 00 11122467789999999999988765
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
|||||||||.||+||+.+|++|+||||||.||...+.++++.+++++++.|.|+|+++|+ ...+.++||++++|++
T Consensus 139 ---LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHD-lN~A~ryad~~i~lk~ 214 (258)
T COG1120 139 ---LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHD-LNLAARYADHLILLKD 214 (258)
T ss_pred ---cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999998889999998765 4578999999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|+++++|++++++
T Consensus 215 G~i~a~G~p~evl 227 (258)
T COG1120 215 GKIVAQGTPEEVL 227 (258)
T ss_pred CeEEeecCcchhc
Confidence 9999999998775
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=363.61 Aligned_cols=226 Identities=27% Similarity=0.356 Sum_probs=188.9
Q ss_pred hcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCce
Q 003389 173 LLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRT 246 (824)
Q Consensus 173 ~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~ 246 (824)
+.++.+.+++++++|+|||+.|++||+++|+|||||||||||++|+|+.+++ +|+|.+||.++.... .++.
T Consensus 6 ~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 6 VKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred EeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHh
Confidence 3344455556788999999999999999999999999999999999999987 999999998876543 2478
Q ss_pred EEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcC
Q 003389 247 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326 (824)
Q Consensus 247 i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg 326 (824)
+||++|+..+.+.+||.+|+..+..-+.. .-..++...+++++ ..+-+.|+.+|
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s-~~~slfglfsk~dk-------------------------~~Al~aLervg 136 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTS-TWRSLFGLFSKEDK-------------------------AQALDALERVG 136 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccch-HHHHHhCCCCHHHH-------------------------HHHHHHHHHcC
Confidence 99999999999999999999887533221 10111111122222 23345789999
Q ss_pred CCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh
Q 003389 327 LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (824)
Q Consensus 327 L~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e 406 (824)
+.+.+-++.+. |||||+|||+|||+|+.+|+++|.|||+++|||.++.++|+.|++++++.|.|+|+.+|| ..-
T Consensus 137 i~~~A~qra~~-----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~-vdl 210 (258)
T COG3638 137 ILDKAYQRAST-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-VDL 210 (258)
T ss_pred cHHHHHHHhcc-----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEech-HHH
Confidence 99999888875 999999999999999999999999999999999999999999999999999999999876 457
Q ss_pred HHhhcCeEEEEcCCeEEEecChhhHHH
Q 003389 407 TYDLFDDIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 407 ~~~lfD~iilL~~G~iv~~G~~~~~~~ 433 (824)
+.++||||+-|++|+|+|+||++++.+
T Consensus 211 A~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 211 AKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred HHHHHhhheEecCCcEEEeCChhhhhH
Confidence 889999999999999999999988654
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=362.31 Aligned_cols=208 Identities=27% Similarity=0.398 Sum_probs=185.9
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGE 259 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~ 259 (824)
++.+++|+|++|++||++.++|||||||||+||+|.++.+|+ +|+|.+||+++.+.. .++.+|||-|+-.+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 577999999999999999999999999999999999999997 999999999987654 36899999999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc--cccccccC
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI--CADTMVGD 337 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~--~~dt~vg~ 337 (824)
+||.||+.+-..+.+.... +...+++++|+.+||+. .+++
T Consensus 90 ~Tv~eNIa~VP~L~~w~k~----------------------------------~i~~r~~ELl~lvgL~p~~~~~R---- 131 (309)
T COG1125 90 LTVAENIATVPKLLGWDKE----------------------------------RIKKRADELLDLVGLDPSEYADR---- 131 (309)
T ss_pred ccHHHHHHhhhhhcCCCHH----------------------------------HHHHHHHHHHHHhCCCHHHHhhc----
Confidence 9999999987766654210 11235788999999974 4554
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
++++|||||+|||.+||||+.+|++|+||||+++|||-++.++.+.++++.++.++|+|+++ |+..|++.++|||.+|
T Consensus 132 -yP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVT-HDidEA~kLadri~vm 209 (309)
T COG1125 132 -YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVT-HDIDEALKLADRIAVM 209 (309)
T ss_pred -CchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEe-cCHHHHHhhhceEEEe
Confidence 45679999999999999999999999999999999999999999999999999999999975 5688999999999999
Q ss_pred cCCeEEEecChhhHHH
Q 003389 418 SEGQIVYQGPRDNVLE 433 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (824)
++|+++..+++++++.
T Consensus 210 ~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 210 DAGEIVQYDTPDEILA 225 (309)
T ss_pred cCCeEEEeCCHHHHHh
Confidence 9999999999999863
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=360.73 Aligned_cols=195 Identities=26% Similarity=0.399 Sum_probs=170.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-------CCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~i~yv~Q~d~~ 256 (824)
.++|++||+.|++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.... .++.+|||+|+..+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 57999999999999999999999999999999999999997 999999998886543 23679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccc-ccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD-TMV 335 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d-t~v 335 (824)
+|++||+||+.+.+...+.... ......+.+++.+||.+..+ .++
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~~~p 140 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLKKKP 140 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhccCCc
Confidence 9999999999987766543210 01123567889999987666 555
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
. .|||||||||+|||||+.+|+++|.||||.+||+.++..|++.|++++++.|+|+|+++|.| ++...|||++
T Consensus 141 ~-----eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i 213 (226)
T COG1136 141 S-----ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVI 213 (226)
T ss_pred h-----hcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEE
Confidence 5 59999999999999999999999999999999999999999999999988899999998765 6888999999
Q ss_pred EEcCCeE
Q 003389 416 LLSEGQI 422 (824)
Q Consensus 416 lL~~G~i 422 (824)
.|.+|++
T Consensus 214 ~l~dG~~ 220 (226)
T COG1136 214 ELKDGKI 220 (226)
T ss_pred EEeCCee
Confidence 9999994
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=361.50 Aligned_cols=195 Identities=26% Similarity=0.352 Sum_probs=172.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
..+|+|||++|++||+++|+||||||||||||+|+|+.+|+ +|+|.++|.++. .+...++||+|++.++|.+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence 67999999999999999999999999999999999999997 999999999984 3567899999999999999999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+.|+....+... .+ ...+++++|+.+||.+..|..+. .|
T Consensus 91 ~NV~l~l~~~~~~~----------~e------------------------~~~~a~~~L~~VgL~~~~~~~P~-----qL 131 (248)
T COG1116 91 DNVALGLELRGKSK----------AE------------------------ARERAKELLELVGLAGFEDKYPH-----QL 131 (248)
T ss_pred hhheehhhccccch----------Hh------------------------HHHHHHHHHHHcCCcchhhcCcc-----cc
Confidence 99999987665211 11 11246779999999999887765 59
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC--Ce
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE--GQ 421 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~--G~ 421 (824)
||||||||+|||||+.+|++|+||||+++||..|+.++.+.|.++.++.+.|+++++ |+.+|...++|||++|++ |+
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVT-Hdi~EAv~LsdRivvl~~~P~~ 210 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVT-HDVDEAVYLADRVVVLSNRPGR 210 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEe-CCHHHHHhhhCEEEEecCCCcc
Confidence 999999999999999999999999999999999999999999999998889999976 456789999999999998 55
Q ss_pred EE
Q 003389 422 IV 423 (824)
Q Consensus 422 iv 423 (824)
|.
T Consensus 211 i~ 212 (248)
T COG1116 211 IG 212 (248)
T ss_pred ee
Confidence 53
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=366.93 Aligned_cols=225 Identities=30% Similarity=0.479 Sum_probs=192.7
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCc---ccCCCCC-CceEEEEecCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH---ELNEFVP-QRTCAYISQHDLHH 257 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~---~~~~~~~-~~~i~yv~Q~d~~~ 257 (824)
+...+++|||+.|+.||++||+|||||||||||++|||+..|+ +|.|.+||+ +.+.... .|.||||+|+..+|
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF 89 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF 89 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhc
Confidence 4567899999999999999999999999999999999999998 999999999 6555322 48899999999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
++|||.+|+.|+.+++.. +|++ .+...+++++|+.+.|++.++.++
T Consensus 90 ~HmtVa~NIAFGl~~~~~-------------------~p~~-------------~~~r~rv~elL~lvqL~~la~ryP-- 135 (345)
T COG1118 90 PHMTVADNIAFGLKVRKE-------------------RPSE-------------AEIRARVEELLRLVQLEGLADRYP-- 135 (345)
T ss_pred ccchHHhhhhhccccccc-------------------CCCh-------------hhHHHHHHHHHHHhcccchhhcCc--
Confidence 999999999999876521 1110 011235778899999998887665
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
..|||||||||++||||+..|++|+||||+++||..-+.++.+.|+++.+..|.|+++++ |+.+|++++||||++|
T Consensus 136 ---~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVT-HD~eea~~ladrvvvl 211 (345)
T COG1118 136 ---AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVT-HDQEEALELADRVVVL 211 (345)
T ss_pred ---hhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEe-CCHHHHHhhcceEEEe
Confidence 469999999999999999999999999999999999999999999999988788888876 4567999999999999
Q ss_pred cCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHh
Q 003389 418 SEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 455 (824)
++|+|...||++++ |..|...-++.|+-++
T Consensus 212 ~~G~Ieqvg~p~ev--------~~~P~s~fV~~f~G~~ 241 (345)
T COG1118 212 NQGRIEQVGPPDEV--------YDHPASRFVARFLGEV 241 (345)
T ss_pred cCCeeeeeCCHHHH--------hcCCCccceecccccc
Confidence 99999999999998 4567766666666443
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=412.13 Aligned_cols=258 Identities=26% Similarity=0.405 Sum_probs=220.3
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.++.+...+|+.++++.++|....+. ....+...-+++|+|+++.+..
T Consensus 436 ~q~~~~~~~rL~dil~~~~E~~~~~~-----~~~~~~~~g~I~~~nvsf~y~~--------------------------- 483 (709)
T COG2274 436 FQQAKVALERLGDILDTPPEQEGDKT-----LIHLPKLQGEIEFENVSFRYGP--------------------------- 483 (709)
T ss_pred HHHHHHHHHHHHHHhcCCcccccccc-----cccccccCceEEEEEEEEEeCC---------------------------
Confidence 57788999999999999998422210 1222333468999999987531
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
.+..+|+|+|++|+|||.+||+|+||||||||+|+|+|+++|. +|+|.+||.+++.... ++.++||+|+
T Consensus 484 -----~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~ 555 (709)
T COG2274 484 -----DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQD 555 (709)
T ss_pred -----CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEccc
Confidence 1235999999999999999999999999999999999999997 9999999999877654 6899999998
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.++. -||+||+.++ .|+.+.+++++|+..++.+.. +..++..+||
T Consensus 556 ~~Lf~-gSI~eNi~l~-------------------------~p~~~~e~i~~A~~~ag~~~f--------I~~lP~gy~t 601 (709)
T COG2274 556 PFLFS-GSIRENIALG-------------------------NPEATDEEIIEAAQLAGAHEF--------IENLPMGYDT 601 (709)
T ss_pred chhhc-CcHHHHHhcC-------------------------CCCCCHHHHHHHHHHhCcHHH--------HHhccccccc
Confidence 77765 4999999886 355666788888888876653 5678999999
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.||+ +..+||||||||++|||||+.+|+||+||||||+||+.++..|.+.|.++.+ ++|+|++.|++ .+.+.||+
T Consensus 602 ~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl--~ti~~adr 676 (709)
T COG2274 602 PVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRL--STIRSADR 676 (709)
T ss_pred cccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEccc--hHhhhccE
Confidence 9995 6677999999999999999999999999999999999999999999999975 78999988876 58899999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|+||++|+|+.+|+++++.+
T Consensus 677 IiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 677 IIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred EEEccCCceeccCCHHHHHH
Confidence 99999999999999999876
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=348.66 Aligned_cols=218 Identities=30% Similarity=0.359 Sum_probs=190.9
Q ss_pred hhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEE
Q 003389 172 GLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAY 249 (824)
Q Consensus 172 ~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~y 249 (824)
++.++.++++...++++||||.++.||+++|+|||||||||+|++|++++.|+ +|+|++||.+..... .++.+|.
T Consensus 3 ~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 3 EVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred eeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcce
Confidence 34455566665556999999999999999999999999999999999999998 999999999875432 3688999
Q ss_pred EecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc
Q 003389 250 ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (824)
Q Consensus 250 v~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (824)
++.+..++..||++|||.|-+++.++. +.+ .+.+++++.+.|+|..
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~----------~~~------------------------~kari~~l~k~l~l~~ 125 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLS----------RKE------------------------IKARIAELSKRLQLLE 125 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhh----------hhH------------------------HHHHHHHHHHHhChHH
Confidence 998889999999999999999887653 211 1234677889999999
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh
Q 003389 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (824)
Q Consensus 330 ~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~ 409 (824)
|.|+.+|+ +|-|+||||+|||||+.+|++++|||||||||..+...+.+.++++.. .|+++|.+. |..+|+..
T Consensus 126 ~~~rRv~~-----~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFSS-H~m~Evea 198 (245)
T COG4555 126 YLDRRVGE-----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFSS-HIMQEVEA 198 (245)
T ss_pred HHHHHHhh-----hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEec-ccHHHHHH
Confidence 99999986 999999999999999999999999999999999999999999999875 588999875 56889999
Q ss_pred hcCeEEEEcCCeEEEecChhhHHH
Q 003389 410 LFDDIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 410 lfD~iilL~~G~iv~~G~~~~~~~ 433 (824)
+||+|++|++|++|+.|+++.+..
T Consensus 199 lCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 199 LCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred hhheEEEEecCcEEEcCCHHHHHH
Confidence 999999999999999999987754
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=356.11 Aligned_cols=210 Identities=24% Similarity=0.373 Sum_probs=180.1
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC------CceEEEEecCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDL 255 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~~i~yv~Q~d~ 255 (824)
+.+.|++|||++|++||+++|+||||||||||||+|.|+++|+ +|+|.++|+++..... ++.+|+++|+..
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA 95 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccc
Confidence 4678999999999999999999999999999999999999998 9999999999865432 467999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcc-cccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-ADTM 334 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~dt~ 334 (824)
+|..|||+||+.|..+-+.. +.+ ..++ ..+..-|+..||... +|
T Consensus 96 LFssltV~eNVafplre~~~---------lp~----------~~i~--------------~lv~~KL~~VGL~~~~~~-- 140 (263)
T COG1127 96 LFSSLTVFENVAFPLREHTK---------LPE----------SLIR--------------ELVLMKLELVGLRGAAAD-- 140 (263)
T ss_pred cccccchhHhhheehHhhcc---------CCH----------HHHH--------------HHHHHHHHhcCCChhhhh--
Confidence 99999999999997653221 111 1111 123345778899865 55
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
.++.+||||++||+++||||+.+|++||+||||+||||.++..+.++++++.+..+.|+++++| +.++++.+||++
T Consensus 141 ---~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTH-Dl~s~~~i~Drv 216 (263)
T COG1127 141 ---LYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTH-DLDSLLTIADRV 216 (263)
T ss_pred ---hCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEC-ChHHHHhhhceE
Confidence 4556799999999999999999999999999999999999999999999999988999998765 566899999999
Q ss_pred EEEcCCeEEEecChhhHHH
Q 003389 415 ILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~~ 433 (824)
++|.+|+|+.+|+++++.+
T Consensus 217 ~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 217 AVLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEEeCCEEEEeCCHHHHHh
Confidence 9999999999999998863
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=383.18 Aligned_cols=207 Identities=26% Similarity=0.362 Sum_probs=180.5
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lT 261 (824)
++.+|+|+|++|++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..++|++|
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~t 92 (356)
T PRK11650 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMS 92 (356)
T ss_pred CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCC
Confidence 356999999999999999999999999999999999999987 9999999998875443 478999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.|+.+.++.. +.+ ....++++++.+||++..+..+.
T Consensus 93 v~eNi~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~~----- 133 (356)
T PRK11650 93 VRENMAYGLKIRGMP----------KAE------------------------IEERVAEAARILELEPLLDRKPR----- 133 (356)
T ss_pred HHHHHHhHHhhcCCC----------HHH------------------------HHHHHHHHHHHcCChhHhhCChh-----
Confidence 999999986543211 000 11235678999999988887765
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+..+.|+|+++|++ .++.++||+|++|++|+
T Consensus 134 ~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~ 212 (356)
T PRK11650 134 ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGV 212 (356)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCE
Confidence 59999999999999999999999999999999999999999999999876688998887654 57899999999999999
Q ss_pred EEEecChhhHH
Q 003389 422 IVYQGPRDNVL 432 (824)
Q Consensus 422 iv~~G~~~~~~ 432 (824)
++..|+++++.
T Consensus 213 i~~~g~~~~~~ 223 (356)
T PRK11650 213 AEQIGTPVEVY 223 (356)
T ss_pred EEEECCHHHHH
Confidence 99999998874
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=358.11 Aligned_cols=207 Identities=28% Similarity=0.444 Sum_probs=175.5
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCC--CCCCCCH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDL--HHGEMTV 262 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~--~~~~lTV 262 (824)
++|+|||++|++|++++|+||||||||||+|+|.|+++|. +|+|.++|.+......+..||||||... .-..+||
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV 94 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITV 94 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCCcCH
Confidence 5999999999999999999999999999999999999997 9999999998877655678999999642 2234699
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+|.+..+...+. + .+...++ +++..++++|+.+|+.+.+|..+|+
T Consensus 95 ~d~V~~g~~~~~-g----~~~~~~~-------------------------~d~~~v~~aL~~Vgm~~~~~r~i~~----- 139 (254)
T COG1121 95 KDVVLLGRYGKK-G----WFRRLNK-------------------------KDKEKVDEALERVGMEDLRDRQIGE----- 139 (254)
T ss_pred HHHHHccCcccc-c----ccccccH-------------------------HHHHHHHHHHHHcCchhhhCCcccc-----
Confidence 999987632211 1 1111111 1123578899999999999999986
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||+|||-|||||+.+|++|+|||||+|+|+.++..|.+.|+++.++ |+||+++. |+...+.++||+|++|+ +++
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vt-HDL~~v~~~~D~vi~Ln-~~~ 216 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVT-HDLGLVMAYFDRVICLN-RHL 216 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEe-CCcHHhHhhCCEEEEEc-Cee
Confidence 9999999999999999999999999999999999999999999999987 99999875 55668999999999996 678
Q ss_pred EEecChhhHH
Q 003389 423 VYQGPRDNVL 432 (824)
Q Consensus 423 v~~G~~~~~~ 432 (824)
++.|+++++.
T Consensus 217 ~~~G~~~~~~ 226 (254)
T COG1121 217 IASGPPEEVL 226 (254)
T ss_pred EeccChhhcc
Confidence 8999998875
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=392.41 Aligned_cols=249 Identities=22% Similarity=0.387 Sum_probs=206.2
Q ss_pred HHHHHHHHhccChHHHHHHHhhhccccCCCC---CcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccccC
Q 003389 103 LLESILKIVEEDNEKFLKRIRHRTDRVGIEI---PKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPS 179 (824)
Q Consensus 103 ~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~---p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~ 179 (824)
.-+|+++.+|-.|. + +.-|... .+-.|+|+|+++.+..
T Consensus 437 As~rvFel~dr~P~-----i----~~~G~~~p~~~~G~IeF~~VsFaYP~------------------------------ 477 (716)
T KOG0058|consen 437 ASERVFELMDRKPR-----I----PLTGTLAPDHLQGVIEFEDVSFAYPT------------------------------ 477 (716)
T ss_pred hHHHHHHHhccCCC-----C----CCCCccccccccceEEEEEeeeecCC------------------------------
Confidence 44566666655544 1 1114333 3568999999986521
Q ss_pred cccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCC
Q 003389 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLH 256 (824)
Q Consensus 180 ~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~ 256 (824)
+ .+.+||||+||+|+|||.|||+||||+||||+.++|-.+++|+ +|+|++||+|+.++.+ +++||+|.|++.+
T Consensus 478 R-p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvL 553 (716)
T KOG0058|consen 478 R-PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVL 553 (716)
T ss_pred C-CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeecccee
Confidence 1 2467999999999999999999999999999999999999997 9999999999988765 5889999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
|.. ||+|||.|+.. +.+.++++.|+..++.+.. +.++++.+||.||
T Consensus 554 Fs~-sI~eNI~YG~~-------------------------~~t~e~i~~AAk~ANah~F--------I~~~p~gY~T~VG 599 (716)
T KOG0058|consen 554 FSG-SIRENIAYGLD-------------------------NATDEEIEAAAKMANAHEF--------ITNFPDGYNTVVG 599 (716)
T ss_pred ecc-cHHHHHhcCCC-------------------------CCCHHHHHHHHHHhChHHH--------HHhCccccccccC
Confidence 976 99999999742 3344566667776665554 5589999999999
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
++. ..||||||||++|||||+++|+||||||.||+||++++..+.+.|.++.+ ++||+++-|. -++.+.+|+|++
T Consensus 600 EkG-~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHR--LSTV~~Ad~Ivv 674 (716)
T KOG0058|consen 600 EKG-SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHR--LSTVRHADQIVV 674 (716)
T ss_pred Ccc-ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehh--hhHhhhccEEEE
Confidence 754 45999999999999999999999999999999999999999999999876 5888886554 468899999999
Q ss_pred EcCCeEEEecChhhHHH
Q 003389 417 LSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~~ 433 (824)
+++|++++.|+++++++
T Consensus 675 i~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 675 IDKGRVVEMGTHDELLS 691 (716)
T ss_pred EcCCeEEecccHHHHhh
Confidence 99999999999999864
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=379.88 Aligned_cols=218 Identities=28% Similarity=0.433 Sum_probs=186.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV 262 (824)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..++|++||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 46899999999999999999999999999999999999987 9999999998865433 4779999999999999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.|+.+.++.. +.+ ....++++++.+||++..|+.+. .
T Consensus 94 ~eNi~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~l~L~~~~~~~~~-----~ 134 (353)
T TIGR03265 94 ADNIAYGLKNRGMG----------RAE------------------------VAERVAELLDLVGLPGSERKYPG-----Q 134 (353)
T ss_pred HHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCCCchhhCChh-----h
Confidence 99999986533211 000 11246778999999998887765 5
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+|||||+.+|++||||||++|||..++.++.+.|+++.++.+.|+|+++|++ .++..+||+|++|++|++
T Consensus 135 LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVI 213 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999876688998887655 588999999999999999
Q ss_pred EEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 003389 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (824)
Q Consensus 423 v~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (824)
+..|+++++.+ .|....++.|+
T Consensus 214 ~~~g~~~~~~~--------~p~~~~~a~~~ 235 (353)
T TIGR03265 214 EQVGTPQEIYR--------HPATPFVADFV 235 (353)
T ss_pred EEEcCHHHHHh--------CCCCHHHHHhc
Confidence 99999988743 45544455554
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=376.72 Aligned_cols=206 Identities=25% Similarity=0.335 Sum_probs=178.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC------CceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~~i~yv~Q~d~~~ 257 (824)
.++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999997 9999999998865432 45799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||+||+.|.....+... . +...++.++++.+||.+..|..++
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------~------------------------~~~~~v~e~l~~vgL~~~~~~~~~- 139 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTPK----------D------------------------EIKRKVTELLALVGLGDKHDSYPS- 139 (343)
T ss_pred ccCcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhhCChh-
Confidence 99999999998754332210 0 011235678999999988887765
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++..+.|+|+++|+ .+.+.++||+|++|
T Consensus 140 ----~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~-~~~v~~~~d~v~vl 214 (343)
T TIGR02314 140 ----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE-MDVVKRICDCVAVI 214 (343)
T ss_pred ----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEE
Confidence 5999999999999999999999999999999999999999999999987668899987765 55788999999999
Q ss_pred cCCeEEEecChhhHH
Q 003389 418 SEGQIVYQGPRDNVL 432 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (824)
++|++++.|+++++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998873
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=378.98 Aligned_cols=218 Identities=24% Similarity=0.392 Sum_probs=186.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV 262 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..++|++||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 46899999999999999999999999999999999999997 9999999998876444 4789999999999999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.|+.+.++... .+ ....++++++.+||.+..+..+. .
T Consensus 96 ~eNi~~~l~~~~~~~----------~~------------------------~~~~v~~~l~~~gl~~~~~r~~~-----~ 136 (351)
T PRK11432 96 GENVGYGLKMLGVPK----------EE------------------------RKQRVKEALELVDLAGFEDRYVD-----Q 136 (351)
T ss_pred HHHHHHHHhHcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhcCChh-----h
Confidence 999999865433210 00 11245778999999988877665 5
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|+++|+ ..++.+++|+|++|++|++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd-~~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHD-QSEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999987668898887665 4588999999999999999
Q ss_pred EEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 003389 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (824)
Q Consensus 423 v~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (824)
+..|+++++. ..|....+|.|+
T Consensus 216 ~~~g~~~~~~--------~~p~~~~~a~~~ 237 (351)
T PRK11432 216 MQIGSPQELY--------RQPASRFMASFM 237 (351)
T ss_pred EEEcCHHHHH--------hCCCchHHHHhc
Confidence 9999998873 235555555554
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=376.56 Aligned_cols=206 Identities=22% Similarity=0.358 Sum_probs=179.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCc--ceEeeCCcccCCCCC-CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRAS--GKITYCGHELNEFVP-QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~s--G~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ + |+|.++|+++....+ ++.++||+|+..++|++
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCC
Confidence 46999999999999999999999999999999999999987 8 999999998865433 46799999999999999
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.|+.+.++... . +....++++++.+||++..|+.++
T Consensus 95 tv~enl~~~l~~~~~~~----------~------------------------~~~~~v~~~l~~~gL~~~~~~~~~---- 136 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMPK----------A------------------------DIAERVADALKLVGLGDAAAHLPA---- 136 (362)
T ss_pred cHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHhcCCCchhhCChh----
Confidence 99999999865432210 0 011235778999999998887776
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL-DVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~-~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.++. +.|+|+++|+ ..++..++|+|++|++
T Consensus 137 -~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd-~~ea~~l~dri~vl~~ 214 (362)
T TIGR03258 137 -QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHD-QDDALTLADKAGIMKD 214 (362)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 499999999999999999999999999999999999999999999998764 7888887655 5588999999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|+++..|+++++.
T Consensus 215 G~i~~~g~~~~~~ 227 (362)
T TIGR03258 215 GRLAAHGEPQALY 227 (362)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999999874
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=342.14 Aligned_cols=223 Identities=24% Similarity=0.399 Sum_probs=181.9
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC--CCCCcceEeeCCcccCCC-----CCCceEEEEecCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK--DLRASGKITYCGHELNEF-----VPQRTCAYISQHD 254 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~--~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d 254 (824)
+.+.+|+|||+.|+++++|||||||||||||||++|..+.+. ..+++|+|.|+|+++.+. ..++.+|+|+|.+
T Consensus 18 g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkP 97 (253)
T COG1117 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKP 97 (253)
T ss_pred CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCC
Confidence 356799999999999999999999999999999999988654 457889999999988653 2368899999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt 333 (824)
.-|| +|++||+.|+.+++|... .+.++ +++..|+.-+|. ...|.
T Consensus 98 nPFp-~SIydNVayG~r~~g~~~--------------------~~lde--------------iVe~sLk~AaLWdEVKDr 142 (253)
T COG1117 98 NPFP-MSIYDNVAYGLRLHGIKD--------------------KELDE--------------IVESSLKKAALWDEVKDR 142 (253)
T ss_pred CCCC-chHHHHHHHhHHhhccch--------------------HHHHH--------------HHHHHHHHhHhHHHhHHH
Confidence 9999 899999999999887632 11111 233334444442 12222
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
+ ++...+|||||+||++|||+|+.+|+|||||||||+|||.++.+|-+++.++.+ +-|||+++| ....+.+..|+
T Consensus 143 L--~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTH-nmqQAaRvSD~ 217 (253)
T COG1117 143 L--HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTH-NMQQAARVSDY 217 (253)
T ss_pred h--hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeC-CHHHHHHHhHh
Confidence 1 123456999999999999999999999999999999999999999999999975 678888765 45688899999
Q ss_pred EEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (824)
..++..|++|++|+++++ |..|.++.+.||+
T Consensus 218 taFf~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 218 TAFFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred hhhhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 999999999999999987 5678887777775
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=377.71 Aligned_cols=219 Identities=26% Similarity=0.361 Sum_probs=187.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV 262 (824)
+++|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..++|++||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 45899999999999999999999999999999999999987 9999999998865443 4779999999999999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.|+.+.++... .+ ....++++++.+||++..++.+. .
T Consensus 104 ~eNi~~~l~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~p~-----~ 144 (375)
T PRK09452 104 FENVAFGLRMQKTPA----------AE------------------------ITPRVMEALRMVQLEEFAQRKPH-----Q 144 (375)
T ss_pred HHHHHHHHhhcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhhCChh-----h
Confidence 999999865332210 00 01235678999999988887765 5
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+|||+|+.+|++|||||||+|||..++..+.+.|+++.+..+.|+|+++|+ ..++..++|+|++|++|++
T Consensus 145 LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd-~~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHD-QEEALTMSDRIVVMRDGRI 223 (375)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999988668898887665 5588999999999999999
Q ss_pred EEecChhhHHHHHHHcCCCCCCCCCHHHHHH
Q 003389 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFLQ 453 (824)
Q Consensus 423 v~~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 453 (824)
+..|+++++. ..|....+|+|+-
T Consensus 224 ~~~g~~~~i~--------~~p~~~~~a~~~g 246 (375)
T PRK09452 224 EQDGTPREIY--------EEPKNLFVARFIG 246 (375)
T ss_pred EEEcCHHHHH--------hCcccHHHHHhcC
Confidence 9999998873 3566666677653
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=367.63 Aligned_cols=206 Identities=29% Similarity=0.440 Sum_probs=178.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~lT 261 (824)
+.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.+||++|++.+++.+|
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 56999999999999999999999999999999999999997 999999999875422 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.|.++.++... . + ....++++++.++|.+..++.+++
T Consensus 97 v~e~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~---- 138 (306)
T PRK13537 97 VRENLLVFGRYFGLSA----------A----------A--------------ARALVPPLLEFAKLENKADAKVGE---- 138 (306)
T ss_pred HHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHcCCchHhcCchhh----
Confidence 9999998765543210 0 0 011346788999999888888764
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|+|+++|+ ..++.++||+|++|++|+
T Consensus 139 -LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~-l~e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 139 -LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHF-MEEAERLCDRLCVIEEGR 215 (306)
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCC-HHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999975 48898888765 458889999999999999
Q ss_pred EEEecChhhHHH
Q 003389 422 IVYQGPRDNVLE 433 (824)
Q Consensus 422 iv~~G~~~~~~~ 433 (824)
+++.|+++++..
T Consensus 216 i~~~g~~~~l~~ 227 (306)
T PRK13537 216 KIAEGAPHALIE 227 (306)
T ss_pred EEEECCHHHHHh
Confidence 999999988754
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=370.48 Aligned_cols=208 Identities=22% Similarity=0.326 Sum_probs=180.6
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-------CceEEEEecCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHD 254 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d 254 (824)
+.+.+|+|+||+|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 3456999999999999999999999999999999999999997 9999999999875433 46799999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
.+++++||+||+.|.....+... .+ ....+.++++.+||++..++.
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~vgL~~~~~~~ 126 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLGWPE----------QE------------------------RKEKALELLKLVGLEEYEHRY 126 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHhcCCchhhhCC
Confidence 99999999999999765433210 00 112356789999998888877
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
+++ |||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+..++|+|+++|+ ..++.++||+|
T Consensus 127 p~~-----LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd-~~ea~~~~drI 200 (363)
T TIGR01186 127 PDE-----LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHD-LDEAIRIGDRI 200 (363)
T ss_pred hhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEE
Confidence 764 999999999999999999999999999999999999999999999987668899887655 55788999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 003389 415 ILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (824)
++|++|+++..|+++++.
T Consensus 201 ~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 201 VIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred EEEeCCEEEeeCCHHHHH
Confidence 999999999999998875
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=328.27 Aligned_cols=201 Identities=25% Similarity=0.401 Sum_probs=178.5
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCHHHHHH
Q 003389 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLD 267 (824)
Q Consensus 189 ~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV~E~L~ 267 (824)
..++.|++||++||+||||||||||||+|||+..|. +|+|++||++.....| +|.+++++|+.++|.++||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 568899999999999999999999999999999997 9999999999876655 588999999999999999999998
Q ss_pred HhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHH
Q 003389 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (824)
Q Consensus 268 f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGq 347 (824)
++..- +-+ +.. +..+.++.++...||..+.+..++. |||||
T Consensus 94 LGl~P---~Lk------L~a-------------------------~~r~~v~~aa~~vGl~~~~~RLP~~-----LSGGq 134 (231)
T COG3840 94 LGLSP---GLK------LNA-------------------------EQREKVEAAAAQVGLAGFLKRLPGE-----LSGGQ 134 (231)
T ss_pred ccCCc---ccc------cCH-------------------------HHHHHHHHHHHHhChhhHhhhCccc-----cCchH
Confidence 87431 110 000 1123467788999999999988875 99999
Q ss_pred HHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecC
Q 003389 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGP 427 (824)
Q Consensus 348 rqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~ 427 (824)
||||++||+|+++-+||+||||+|+||+.-+.++...+.+++.+.+.|+++++|||. ++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeecc
Confidence 999999999999999999999999999999999999999999999999999999886 7889999999999999999999
Q ss_pred hhhHH
Q 003389 428 RDNVL 432 (824)
Q Consensus 428 ~~~~~ 432 (824)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 88764
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=350.11 Aligned_cols=206 Identities=27% Similarity=0.370 Sum_probs=173.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d~~~ 257 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 46999999999999999999999999999999999999987 999999998875432 245799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||+||+.+........ .+.+ ....++++++.+||.+..++.++
T Consensus 90 ~~~tv~~~l~~~~~~~~~~---------~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~- 135 (235)
T cd03261 90 DSLTVFENVAFPLREHTRL---------SEEE------------------------IREIVLEKLEAVGLRGAEDLYPA- 135 (235)
T ss_pred CCCcHHHHHHHHHhhccCC---------CHHH------------------------HHHHHHHHHHHcCCchhhcCChh-
Confidence 9999999998864321100 0000 01134568899999887777765
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.++||++++|
T Consensus 136 ----~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l 210 (235)
T cd03261 136 ----ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVL 210 (235)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEE
Confidence 49999999999999999999999999999999999999999999999864578888877654 4778899999999
Q ss_pred cCCeEEEecChhhH
Q 003389 418 SEGQIVYQGPRDNV 431 (824)
Q Consensus 418 ~~G~iv~~G~~~~~ 431 (824)
++|++++.|+++++
T Consensus 211 ~~G~i~~~g~~~~~ 224 (235)
T cd03261 211 YDGKIVAEGTPEEL 224 (235)
T ss_pred ECCeEEEecCHHHH
Confidence 99999999998765
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=328.97 Aligned_cols=209 Identities=25% Similarity=0.377 Sum_probs=180.9
Q ss_pred ccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEE
Q 003389 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCA 248 (824)
Q Consensus 175 ~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~ 248 (824)
++.+.|..+.++|+||||.|++||++-|+||||||||||||+|.+..+|+ +|+|++||+++.... .+|+||
T Consensus 6 ~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IG 82 (223)
T COG2884 6 NVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIG 82 (223)
T ss_pred hhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheee
Confidence 34456666677999999999999999999999999999999999999997 999999999986543 258899
Q ss_pred EEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC
Q 003389 249 YISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD 328 (824)
Q Consensus 249 yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~ 328 (824)
+|+||..++++.||.||++|+.+..|...+ +...++.++|+..||.
T Consensus 83 vVFQD~rLL~~~tvyeNVA~pL~v~G~~~~----------------------------------~i~~rV~~~L~~VgL~ 128 (223)
T COG2884 83 VVFQDFRLLPDRTVYENVALPLRVIGKPPR----------------------------------EIRRRVSEVLDLVGLK 128 (223)
T ss_pred eEeeeccccccchHhhhhhhhhhccCCCHH----------------------------------HHHHHHHHHHHHhccc
Confidence 999999999999999999999887765311 1123567799999999
Q ss_pred ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHH
Q 003389 329 ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (824)
Q Consensus 329 ~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~ 408 (824)
+.++..+- .|||||||||+||||++.+|++|+.||||-+||+.++.+|++.+.++.+ .|.||++++| +..-+-
T Consensus 129 ~k~~~lP~-----~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATH-d~~lv~ 201 (223)
T COG2884 129 HKARALPS-----QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATH-DLELVN 201 (223)
T ss_pred hhhhcCcc-----ccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEec-cHHHHH
Confidence 98886654 5999999999999999999999999999999999999999999999986 6999999875 444566
Q ss_pred hhcCeEEEEcCCeEEEecC
Q 003389 409 DLFDDIILLSEGQIVYQGP 427 (824)
Q Consensus 409 ~lfD~iilL~~G~iv~~G~ 427 (824)
++--+++.|++|+++....
T Consensus 202 ~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 202 RMRHRVLALEDGRLVRDES 220 (223)
T ss_pred hccCcEEEEeCCEEEeccc
Confidence 6788999999999987654
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=374.19 Aligned_cols=218 Identities=23% Similarity=0.329 Sum_probs=185.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV 262 (824)
..+|+|+|++|++|++++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..++|++||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 46899999999999999999999999999999999999987 9999999998865433 5789999999999999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
.||+.|+.+.++.. +. +....++++++.+||.+..++.+. +
T Consensus 109 ~eNi~~~l~~~~~~----------~~------------------------~~~~~v~~~l~~l~L~~~~~~~~~-----~ 149 (377)
T PRK11607 109 EQNIAFGLKQDKLP----------KA------------------------EIASRVNEMLGLVHMQEFAKRKPH-----Q 149 (377)
T ss_pred HHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhcCChh-----h
Confidence 99999986533211 00 011235678999999988777665 5
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+|||||+.+|++|||||||+|||..++.++.+.|+++.+..+.|+|+++|+ ..++..++|++++|++|++
T Consensus 150 LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd-~~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHD-QEEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHhCCEEEEEeCCEE
Confidence 999999999999999999999999999999999999999999999987668898887665 5588999999999999999
Q ss_pred EEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 003389 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (824)
Q Consensus 423 v~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (824)
+..|+++++. ..|....+|+|+
T Consensus 229 ~~~g~~~~~~--------~~p~~~~~a~~~ 250 (377)
T PRK11607 229 VQIGEPEEIY--------EHPTTRYSAEFI 250 (377)
T ss_pred EEEcCHHHHH--------hCCccHHHHHhc
Confidence 9999998874 235544456654
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=371.00 Aligned_cols=222 Identities=27% Similarity=0.428 Sum_probs=184.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV 262 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++....+ ++.++||+|+..+++.+||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 46999999999999999999999999999999999999987 9999999998865433 3679999999999999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.|+.+....... ..+. +....++++++.+||++..++.+. .
T Consensus 92 ~eni~~~~~~~~~~~~------~~~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~-----~ 136 (353)
T PRK10851 92 FDNIAFGLTVLPRRER------PNAA------------------------AIKAKVTQLLEMVQLAHLADRYPA-----Q 136 (353)
T ss_pred HHHHHhhhhhcccccC------CCHH------------------------HHHHHHHHHHHHcCCchhhhCChh-----h
Confidence 9999997643210000 0000 011245678999999988887765 5
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.+.|+|+++|+ ..++..+||+|++|++|++
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd-~~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHD-QEEAMEVADRVVVMSQGNI 215 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999987668888887655 5688999999999999999
Q ss_pred EEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 003389 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (824)
Q Consensus 423 v~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (824)
++.|+++++.. .|...-+++|+
T Consensus 216 ~~~g~~~~i~~--------~p~~~~~~~~~ 237 (353)
T PRK10851 216 EQAGTPDQVWR--------EPATRFVLEFM 237 (353)
T ss_pred EEEcCHHHHHh--------CccchHHHHhc
Confidence 99999988742 35444455554
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=371.73 Aligned_cols=206 Identities=26% Similarity=0.379 Sum_probs=177.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV 262 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 46999999999999999999999999999999999999987 9999999998865432 4679999999999999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.|+.+.++... .+ ....++++++.+||++..++.++ .
T Consensus 93 ~eni~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~lgL~~~~~~~~~-----~ 133 (369)
T PRK11000 93 AENMSFGLKLAGAKK----------EE------------------------INQRVNQVAEVLQLAHLLDRKPK-----A 133 (369)
T ss_pred HHHHHhHHhhcCCCH----------HH------------------------HHHHHHHHHHHcCChhhhcCChh-----h
Confidence 999998754332110 00 01235678999999988887765 4
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++.+..+.|+|+++|++ .++..+||+|++|++|++
T Consensus 134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRV 212 (369)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875688988887654 578899999999999999
Q ss_pred EEecChhhHH
Q 003389 423 VYQGPRDNVL 432 (824)
Q Consensus 423 v~~G~~~~~~ 432 (824)
+..|+++++.
T Consensus 213 ~~~g~~~~i~ 222 (369)
T PRK11000 213 AQVGKPLELY 222 (369)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=389.93 Aligned_cols=207 Identities=26% Similarity=0.377 Sum_probs=175.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++|+||+.+||+||||||||||+++|+|++ |. +|+|.+||+++.+... ++.++||+|++.+|..
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~- 437 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG- 437 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-
Confidence 46999999999999999999999999999999999999 76 9999999999877643 5789999999877765
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
|++|||.++. |+.+.+++.+++...+.+. . .-.|++..||.||+. .
T Consensus 438 TI~eNI~~g~-------------------------~~~~~eei~~al~~a~l~~------~--i~~lp~G~dT~vge~-G 483 (588)
T PRK11174 438 TLRDNVLLGN-------------------------PDASDEQLQQALENAWVSE------F--LPLLPQGLDTPIGDQ-A 483 (588)
T ss_pred CHHHHhhcCC-------------------------CCCCHHHHHHHHHHhCHHH------H--HHhcccccccccccC-C
Confidence 9999998862 2233345555554443222 2 235677889999975 5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
..||||||||++|||||+++|++|+||||||+||+.++..|.+.|+++.+ ++|+|++.|++ ++.+.||+|++|++|
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvIiItHrl--~~i~~aD~Iivl~~G 559 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR--RQTTLMVTHQL--EDLAQWDQIWVMQDG 559 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCh--HHHHhCCEEEEEeCC
Confidence 56999999999999999999999999999999999999999999999863 78999988887 567889999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
++++.|+++++.+
T Consensus 560 ~i~e~G~~~eL~~ 572 (588)
T PRK11174 560 QIVQQGDYAELSQ 572 (588)
T ss_pred eEeecCCHHHHHh
Confidence 9999999998863
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=361.94 Aligned_cols=207 Identities=27% Similarity=0.421 Sum_probs=177.8
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~l 260 (824)
++++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.+
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 356999999999999999999999999999999999999987 999999999875321 245699999999999999
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.+.++.++... .+ ....++++++.+||.+..++.+++
T Consensus 82 tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~--- 124 (302)
T TIGR01188 82 TGRENLEMMGRLYGLPK----------DE------------------------AEERAEELLELFELGEAADRPVGT--- 124 (302)
T ss_pred cHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCChhHhCCchhh---
Confidence 99999998765443210 00 011356789999999888887764
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|+|+++|+ ..++.++||+|++|++|
T Consensus 125 --LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvi~~sH~-~~~~~~~~d~v~~l~~G 200 (302)
T TIGR01188 125 --YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVTILLTTHY-MEEADKLCDRIAIIDHG 200 (302)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCC-HHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999976 48898887665 45888999999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
++++.|+++++.+
T Consensus 201 ~i~~~g~~~~l~~ 213 (302)
T TIGR01188 201 RIIAEGTPEELKR 213 (302)
T ss_pred EEEEECCHHHHHH
Confidence 9999999988754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=340.48 Aligned_cols=204 Identities=26% Similarity=0.315 Sum_probs=175.9
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC----CCceEEEEecCC--CCCC
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHD--LHHG 258 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~----~~~~i~yv~Q~d--~~~~ 258 (824)
++|+|||++|.+||+++|+|+||||||||.++|+|+.+|+ +|+|.++|.+..... ..+.+.+|+||+ .+.|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 6999999999999999999999999999999999999997 999999998776532 357899999997 5789
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcc-ccccccC
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-ADTMVGD 337 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~dt~vg~ 337 (824)
..||++.|.-+.+..+.+. . ...+.++|+.+||+.. ++
T Consensus 98 ~~tv~~~l~Epl~~~~~~~----------~--------------------------~~~i~~~L~~VgL~~~~l~----- 136 (252)
T COG1124 98 RRTVGRILSEPLRPHGLSK----------S--------------------------QQRIAELLDQVGLPPSFLD----- 136 (252)
T ss_pred chhHHHHHhhhhccCCccH----------H--------------------------HHHHHHHHHHcCCCHHHHh-----
Confidence 9999999987665433211 1 1125678999999743 34
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
+.+.+||||||||++|||||+.+|++|++|||||+||+..+.+|++.|.++.++.+.|.+++. |+..-+..+||||+||
T Consensus 137 R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~Is-Hdl~~v~~~cdRi~Vm 215 (252)
T COG1124 137 RRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFIS-HDLALVEHMCDRIAVM 215 (252)
T ss_pred cCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEe-CcHHHHHHHhhheeee
Confidence 345569999999999999999999999999999999999999999999999998888888865 5566888999999999
Q ss_pred cCCeEEEecChhhHHH
Q 003389 418 SEGQIVYQGPRDNVLE 433 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (824)
++|++++.++.+++..
T Consensus 216 ~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 216 DNGQIVEIGPTEELLS 231 (252)
T ss_pred eCCeEEEeechhhhhc
Confidence 9999999999998864
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=342.82 Aligned_cols=229 Identities=24% Similarity=0.349 Sum_probs=189.7
Q ss_pred hcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCC----ceEE
Q 003389 173 LLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCA 248 (824)
Q Consensus 173 ~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~----~~i~ 248 (824)
..++. ++.+...+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...+. .-++
T Consensus 7 v~~l~-k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 7 VRGLS-KRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eccce-eecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccce
Confidence 34443 3345678999999999999999999999999999999999999998 99999999999877653 4578
Q ss_pred EEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC
Q 003389 249 YISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD 328 (824)
Q Consensus 249 yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~ 328 (824)
..+|...+|++|||.||+..++..+.. ... .+ ...+.. .+.++ ......++|+.+||.
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~-~~~-~l-~~~~~~--------~~e~~-----------~~e~A~~~Le~vgL~ 140 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLG-LSG-LL-GRPRAR--------KEERE-----------ARERARELLEFVGLG 140 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhh-hhh-hh-ccccch--------hhHHH-----------HHHHHHHHHHHcCCc
Confidence 899999999999999999998765421 000 00 000000 00011 122456799999999
Q ss_pred ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHH
Q 003389 329 ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (824)
Q Consensus 329 ~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~ 408 (824)
+++|+..|+ ||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.|+++.+..+.|+++ +.|+..-++
T Consensus 141 ~~a~~~A~~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~till-IEHdM~~Vm 214 (250)
T COG0411 141 ELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILL-IEHDMKLVM 214 (250)
T ss_pred hhhcchhhc-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEE-EEeccHHHh
Confidence 999999986 99999999999999999999999999999999999999999999999865677776 567888999
Q ss_pred hhcCeEEEEcCCeEEEecChhhHHH
Q 003389 409 DLFDDIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 409 ~lfD~iilL~~G~iv~~G~~~~~~~ 433 (824)
++||||+||+.|+++.+|+++++.+
T Consensus 215 ~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 215 GLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred hhccEEEeccCCcCcccCCHHHHhc
Confidence 9999999999999999999999853
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=347.97 Aligned_cols=207 Identities=26% Similarity=0.369 Sum_probs=179.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccC----CCCCCceEEEEecCC-CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN----EFVPQRTCAYISQHD-LHHG 258 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~----~~~~~~~i~yv~Q~d-~~~~ 258 (824)
..+|+|+|+.|++|+.++|+||||||||||+++|+|+++|. +|+|.++|.+.. ....++.+|||+|++ ..+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 57999999999999999999999999999999999999997 999999999865 223468899999996 3456
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCc
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (824)
.-||.|.++|+....+.... +...+++++|+.+||.+.++..+.
T Consensus 94 ~~tV~~evafg~~n~g~~~~----------------------------------e~~~rv~~~l~~vgl~~~~~r~p~-- 137 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPRE----------------------------------EIEERVAEALELVGLEELLDRPPF-- 137 (235)
T ss_pred cCcHHHHHhhchhhcCCCHH----------------------------------HHHHHHHHHHHHcCchhhccCCcc--
Confidence 66999999999877665210 012357789999999999887765
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+||.+|+.+|++|+|||||||||+..+.++++.++++.+..+.|+|++. |....+.++||++++|+
T Consensus 138 ---~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~t-Hd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 138 ---NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVT-HDLELVLEYADRVVVLD 213 (235)
T ss_pred ---ccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEe-CcHHHHHhhCCEEEEEE
Confidence 59999999999999999999999999999999999999999999999986678888876 55678999999999999
Q ss_pred CCeEEEecChhhHHH
Q 003389 419 EGQIVYQGPRDNVLE 433 (824)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (824)
+|+++++|++.++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999877654
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=342.31 Aligned_cols=200 Identities=32% Similarity=0.443 Sum_probs=168.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV 262 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 46999999999999999999999999999999999999887 9999999998754322 4579999999888999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.+.....+.. ..+ ....++.+++.+||++..++.++ .
T Consensus 90 ~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (213)
T cd03259 90 AENIAFGLKLRGVP----------KAE------------------------IRARVRELLELVGLEGLLNRYPH-----E 130 (213)
T ss_pred HHHHHhHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCChhhhhcChh-----h
Confidence 99998864322110 000 01124568889999887777765 4
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999865578888877654 477889999999999999
Q ss_pred EEec
Q 003389 423 VYQG 426 (824)
Q Consensus 423 v~~G 426 (824)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=335.62 Aligned_cols=209 Identities=24% Similarity=0.360 Sum_probs=177.2
Q ss_pred ccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCC
Q 003389 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLH 256 (824)
Q Consensus 181 ~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~ 256 (824)
++..++|++||+++++||+++|+||||+|||||||+|+|+.++. +|+|.++|++++...+ +.-++||||....
T Consensus 13 YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~i 89 (237)
T COG0410 13 YGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRI 89 (237)
T ss_pred ccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccc
Confidence 34578999999999999999999999999999999999999986 9999999999987655 3569999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc-CCCccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMV 335 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-gL~~~~dt~v 335 (824)
|+.|||+|||..++..+... +. .....+.+.+.| .|....+++-
T Consensus 90 F~~LTVeENL~~g~~~~~~~-----------~~------------------------~~~~~e~v~~lFP~Lker~~~~a 134 (237)
T COG0410 90 FPRLTVEENLLLGAYARRDK-----------EA------------------------QERDLEEVYELFPRLKERRNQRA 134 (237)
T ss_pred hhhCcHHHHHhhhhhccccc-----------cc------------------------ccccHHHHHHHChhHHHHhcCcc
Confidence 99999999999875432100 00 000134455555 3566667776
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
|+ |||||||.++|||||+.+|++|+|||||.||-|.-..+|.+.++++.+..+.||++ +.|......+++||.+
T Consensus 135 G~-----LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlL-VEQn~~~Al~iaDr~y 208 (237)
T COG0410 135 GT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILL-VEQNARFALEIADRGY 208 (237)
T ss_pred cC-----CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEE-EeccHHHHHHhhCEEE
Confidence 65 99999999999999999999999999999999999999999999999765656666 5899999999999999
Q ss_pred EEcCCeEEEecChhhHHH
Q 003389 416 LLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~~ 433 (824)
+|.+|+|++.|+.+++.+
T Consensus 209 vle~Griv~~G~~~eL~~ 226 (237)
T COG0410 209 VLENGRIVLSGTAAELLA 226 (237)
T ss_pred EEeCCEEEEecCHHHHhc
Confidence 999999999999998753
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=365.30 Aligned_cols=206 Identities=26% Similarity=0.357 Sum_probs=176.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC------CceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~~i~yv~Q~d~~~ 257 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++|++|+..++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 56999999999999999999999999999999999999987 9999999998865321 35799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||+||+.+.....+... . + ....++++++.+||++..++.++
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~gL~~~~~~~~~- 139 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTPK----------A----------E--------------IKARVTELLELVGLSDKADRYPA- 139 (343)
T ss_pred CCCcHHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHcCCchhhhCChh-
Confidence 99999999998754332210 0 0 01135668899999888887765
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..++|+|+++|+. .++.++||++++|
T Consensus 140 ----~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l 214 (343)
T PRK11153 140 ----QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVI 214 (343)
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 49999999999999999999999999999999999999999999999875588988887654 4788899999999
Q ss_pred cCCeEEEecChhhHH
Q 003389 418 SEGQIVYQGPRDNVL 432 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (824)
++|++++.|+++++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999988774
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=334.05 Aligned_cols=217 Identities=23% Similarity=0.364 Sum_probs=185.6
Q ss_pred cccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCC----ceEEE
Q 003389 174 LHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCAY 249 (824)
Q Consensus 174 ~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~----~~i~y 249 (824)
.++.+++ ++++++++||+.|++||+++|+|||||||||.+.++.|+.+|+ +|+|.+||.+++..... .-+||
T Consensus 8 ~~l~K~y-~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigY 83 (243)
T COG1137 8 ENLAKSY-KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGY 83 (243)
T ss_pred hhhhHhh-CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCccc
Confidence 3444444 4577999999999999999999999999999999999999998 99999999999876542 35899
Q ss_pred EecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc
Q 003389 250 ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (824)
Q Consensus 250 v~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (824)
++|+...|..|||+||+.-....+.... .++ +.+...+.+|+.|+|.|
T Consensus 84 LpQE~SIFr~LtV~dNi~~vlE~~~~d~--------~~~------------------------~~~~~l~~LL~ef~i~h 131 (243)
T COG1137 84 LPQEASIFRKLTVEDNIMAVLEIREKDL--------KKA------------------------ERKEELDALLEEFHITH 131 (243)
T ss_pred ccccchHhhcCcHHHHHHHHHhhhhcch--------hHH------------------------HHHHHHHHHHHHhchHH
Confidence 9999999999999999987765432110 000 11224678999999999
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh
Q 003389 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (824)
Q Consensus 330 ~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~ 409 (824)
+++.+-. .||||||+|+.|||||+.+|+.++||||++|.||-+..+|.+.++.+.+ .|..|+|+-|. ..|+..
T Consensus 132 lr~~~a~-----sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLITDHN-VREtL~ 204 (243)
T COG1137 132 LRDSKAY-----SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLITDHN-VRETLD 204 (243)
T ss_pred HhcCccc-----ccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEcccc-HHHHHh
Confidence 9998755 4999999999999999999999999999999999999999999999987 58999998654 558999
Q ss_pred hcCeEEEEcCCeEEEecChhhHHH
Q 003389 410 LFDDIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 410 lfD~iilL~~G~iv~~G~~~~~~~ 433 (824)
+|||.+++++|++..+|+++++.+
T Consensus 205 i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 205 ICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred hhheEEEEecCeEEecCCHHHHhc
Confidence 999999999999999999998753
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=366.34 Aligned_cols=229 Identities=24% Similarity=0.371 Sum_probs=195.6
Q ss_pred cCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCC
Q 003389 129 VGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGA 208 (824)
Q Consensus 129 ~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGS 208 (824)
..+..+.-.++|+|+++.+. .+++||++|||+|++||-+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~---------------------------------~k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSYG---------------------------------PKRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEeC---------------------------------CCCceecceeEEecCCCEEEEECCCCC
Confidence 46677778899999988642 234599999999999999999999999
Q ss_pred cHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHh
Q 003389 209 GKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAEL 285 (824)
Q Consensus 209 GKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~ 285 (824)
||||++|+|.++++ + +|+|.+||+++++... ++.|||||||..+|.+ ||.+|+.|+.
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn--------------- 449 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGN--------------- 449 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCC---------------
Confidence 99999999999998 4 9999999999987643 6789999997766665 9999999972
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeE
Q 003389 286 SRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365 (824)
Q Consensus 286 ~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLl 365 (824)
|+...+++.+++...+.++. +..|++.++|.||+++.+ |||||||||++||+++++|+|++
T Consensus 450 ----------~sas~eeV~e~~k~a~~hd~--------i~~l~~GY~T~VGerG~~-LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 450 ----------PSASDEEVVEACKRAGLHDV--------ISRLPDGYQTLVGERGLM-LSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred ----------CCcCHHHHHHHHHHcCcHHH--------HHhccccchhhHhhcccc-cccchHHHHHHHHHHhcCCCeEE
Confidence 34445566666665554432 457889999999976554 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhHHH
Q 003389 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 366 LDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~~ 433 (824)
+|||||.||+.|+.+|++.++... .++|+|++.|.. .+...||+|++|++|++...|++++++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 999999999999999999999954 489999988765 4788899999999999999999999875
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=379.68 Aligned_cols=258 Identities=26% Similarity=0.386 Sum_probs=209.4
Q ss_pred hhHHHHHHHHHHHhccChHHHHHHHhhhc-cccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 98 QDKKRLLESILKIVEEDNEKFLKRIRHRT-DRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 98 ~~~~~~~~r~~~~~~~~~e~~~~~~~~~~-~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
...+....++.++.+..|. +...- ...-..-.+.+++|+|+++.+.
T Consensus 315 ~~a~~aa~~I~~~i~~~~~-----i~~~~~~~~~~~~~~g~ief~nV~FsYP---------------------------- 361 (1228)
T KOG0055|consen 315 AKARAAAYRIFETIDRKPS-----IDPYSKGGRVLSSIKGEIEFRNVCFSYP---------------------------- 361 (1228)
T ss_pred hccccchHHHHHHhcCCCC-----CCcccccCCcccccccceEEEEEEecCC----------------------------
Confidence 4456667788888877666 21111 1112233567899999887631
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
+++ +..||+|+|+.|++|+.+||+|||||||||++++|.++++|+ +|+|.+||.++.++.. +.++|.|+|+
T Consensus 362 --sRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~Qe 435 (1228)
T KOG0055|consen 362 --SRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQE 435 (1228)
T ss_pred --CCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeec
Confidence 222 457999999999999999999999999999999999999997 9999999999987654 4789999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
|.+|. .||+||+.|+ +|+...+++.+|++.++.+.. +..|++.+||
T Consensus 436 PvlF~-~tI~eNI~~G-------------------------~~dat~~~i~~a~k~ana~~f--------i~~lp~g~~T 481 (1228)
T KOG0055|consen 436 PVLFA-TTIRENIRYG-------------------------KPDATREEIEEAAKAANAHDF--------ILKLPDGYDT 481 (1228)
T ss_pred hhhhc-ccHHHHHhcC-------------------------CCcccHHHHHHHHHHccHHHH--------HHhhHHhhcc
Confidence 97665 5999999986 355556666777766554332 4568889999
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.||+.... ||||||||++|||||+.+|+|||||||||+||+.++..+.+.|.+..+ |+|.|++.|.. ++.+.+|+
T Consensus 482 ~vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTivVaHRL--StIrnaD~ 556 (1228)
T KOG0055|consen 482 LVGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIVVAHRL--STIRNADK 556 (1228)
T ss_pred cccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEEEeeeh--hhhhccCE
Confidence 99986555 999999999999999999999999999999999999999999999875 67888776754 46677999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|+||+.|++++++.
T Consensus 557 I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 557 IAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred EEEEECCEEEEecCHHHHHh
Confidence 99999999999999999985
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=363.45 Aligned_cols=207 Identities=30% Similarity=0.420 Sum_probs=178.2
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~l 260 (824)
++.+|+||||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.+||++|+..+++.+
T Consensus 53 ~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~ 129 (340)
T PRK13536 53 DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEF 129 (340)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCC
Confidence 356999999999999999999999999999999999999997 999999999875422 246799999999999999
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.+.+..++... .+ ....++++++.+||++..++.+++
T Consensus 130 tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~ll~~~~L~~~~~~~~~~--- 172 (340)
T PRK13536 130 TVRENLLVFGRYFGMST----------RE------------------------IEAVIPSLLEFARLESKADARVSD--- 172 (340)
T ss_pred cHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhCCChhh---
Confidence 99999997654433210 00 011245678899999888888764
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|+++++ .|.|+|+++|+ ..++.++||+|++|++|
T Consensus 173 --LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~-l~e~~~~~d~i~il~~G 248 (340)
T PRK13536 173 --LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHF-MEEAERLCDRLCVLEAG 248 (340)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCC-HHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999976 48898888655 56889999999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
+++++|+++++..
T Consensus 249 ~i~~~g~~~~l~~ 261 (340)
T PRK13536 249 RKIAEGRPHALID 261 (340)
T ss_pred EEEEEcCHHHHHh
Confidence 9999999998764
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=354.29 Aligned_cols=218 Identities=26% Similarity=0.388 Sum_probs=178.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-----CCceEEEEecCCC-CC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-----PQRTCAYISQHDL-HH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-----~~~~i~yv~Q~d~-~~ 257 (824)
+.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 46999999999999999999999999999999999999987 999999999886422 2467999999863 34
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC--ccccccc
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD--ICADTMV 335 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~--~~~dt~v 335 (824)
..+||+||+.|+....+.. +. +....++++++.+||. +..|+.+
T Consensus 97 ~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~~ 142 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS----------EE------------------------EIENRVKRAMNIVGLDYEDYKDKSP 142 (287)
T ss_pred ccccHHHHHHhHHHHCCCC----------HH------------------------HHHHHHHHHHHHcCCCchhhccCCc
Confidence 4679999999864332210 00 0112356789999997 5566655
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
. .|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++..+.|+|+++|+ ..++.++||+|+
T Consensus 143 ~-----~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd-~~~~~~~~drv~ 216 (287)
T PRK13637 143 F-----ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHS-MEDVAKLADRII 216 (287)
T ss_pred c-----cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEE
Confidence 4 5999999999999999999999999999999999999999999999987558898888766 457788999999
Q ss_pred EEcCCeEEEecChhhHHH---HHHHcCCCCCC
Q 003389 416 LLSEGQIVYQGPRDNVLE---FFEHMGFKCPE 444 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 444 (824)
+|++|+++++|+++++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988743 33455666654
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=342.07 Aligned_cols=205 Identities=28% Similarity=0.414 Sum_probs=172.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~lT 261 (824)
+++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 46999999999999999999999999999999999999887 999999998764311 1357999999998999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.+.....+... . +....++++++.+||++..++.+++
T Consensus 90 v~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~---- 131 (220)
T cd03265 90 GWENLYIHARLYGVPG----------A------------------------ERRERIDELLDFVGLLEAADRLVKT---- 131 (220)
T ss_pred HHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCHHHhhCChhh----
Confidence 9999988654322100 0 0011346788999998877877764
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.|+ .+++.++||++++|.+|+
T Consensus 132 -LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~-~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 132 -YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHY-MEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999999987557888887665 457888999999999999
Q ss_pred EEEecChhhH
Q 003389 422 IVYQGPRDNV 431 (824)
Q Consensus 422 iv~~G~~~~~ 431 (824)
++..|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03265 210 IIAEGTPEEL 219 (220)
T ss_pred EEEeCChHHc
Confidence 9999987653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=343.73 Aligned_cols=204 Identities=28% Similarity=0.367 Sum_probs=173.4
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCCCCCC
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHHG 258 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d~~~~ 258 (824)
++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 6999999999999999999999999999999999999987 999999999875432 1357999999999999
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCc
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (824)
.+||+||+.+.....+... . + ....++.+++.+||++..++.+.
T Consensus 96 ~~t~~e~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~-- 139 (233)
T cd03258 96 SRTVFENVALPLEIAGVPK----------A----------E--------------IEERVLELLELVGLEDKADAYPA-- 139 (233)
T ss_pred CCcHHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHCCChhhhhcChh--
Confidence 9999999988643222100 0 0 01124568899999887777665
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.++||++++|+
T Consensus 140 ---~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~ 215 (233)
T cd03258 140 ---QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVME 215 (233)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 59999999999999999999999999999999999999999999999875578888887765 47788999999999
Q ss_pred CCeEEEecChhhH
Q 003389 419 EGQIVYQGPRDNV 431 (824)
Q Consensus 419 ~G~iv~~G~~~~~ 431 (824)
+|++++.|+.+++
T Consensus 216 ~G~i~~~~~~~~~ 228 (233)
T cd03258 216 KGEVVEEGTVEEV 228 (233)
T ss_pred CCEEEEecCHHHH
Confidence 9999999988765
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=384.77 Aligned_cols=254 Identities=26% Similarity=0.412 Sum_probs=204.1
Q ss_pred hhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccc
Q 003389 98 QDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLV 177 (824)
Q Consensus 98 ~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~ 177 (824)
+......+|+.+++++.++ +++.... ...+..+++|+|+++.++
T Consensus 296 ~~~~~a~~ri~~~l~~~~~-----~~~~~~~--~~~~~~~I~f~~vsf~y~----------------------------- 339 (567)
T COG1132 296 QRASAAAERLFELLDEEPE-----VEDPPDP--LKDTIGSIEFENVSFSYP----------------------------- 339 (567)
T ss_pred HHHHHHHHHHHHHHcCCcc-----ccCCCCC--CCCCCCeEEEEEEEEEcC-----------------------------
Confidence 4456677888888877555 2222221 334456699999987642
Q ss_pred cCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCC
Q 003389 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD 254 (824)
Q Consensus 178 ~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d 254 (824)
+++++|+|+|++|+|||.+||+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|+.
T Consensus 340 ----~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~ 412 (567)
T COG1132 340 ----GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDP 412 (567)
T ss_pred ----CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccc
Confidence 1357999999999999999999999999999999999999997 9999999999987653 57899999988
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
.+|. .||+||+.++. |+...+++.+++..++.++ . +..|++.+||.
T Consensus 413 ~LF~-~TI~~NI~~g~-------------------------~~at~eei~~a~k~a~~~d------~--I~~lp~g~dt~ 458 (567)
T COG1132 413 LLFS-GTIRENIALGR-------------------------PDATDEEIEEALKLANAHE------F--IANLPDGYDTI 458 (567)
T ss_pred eeec-ccHHHHHhcCC-------------------------CCCCHHHHHHHHHHhChHH------H--HHhCcccccce
Confidence 8887 69999999872 3333345556655443222 2 33557789999
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
||+ .+..||||||||++||||++++|++|+||||||+||+.++..|.+.++++.+ ++|++++.|++ .+...||+|
T Consensus 459 vge-~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaHRl--sti~~aD~I 533 (567)
T COG1132 459 VGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRL--STIKNADRI 533 (567)
T ss_pred ecC-CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEeccH--hHHHhCCEE
Confidence 994 5566999999999999999999999999999999999999999999998874 57888877766 355569999
Q ss_pred EEEcCCeEEEecChhhHHH
Q 003389 415 ILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~~ 433 (824)
++|++|++++.|+++++..
T Consensus 534 iVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 534 IVLDNGRIVERGTHEELLA 552 (567)
T ss_pred EEEECCEEEEecCHHHHHH
Confidence 9999999999999999875
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=339.98 Aligned_cols=201 Identities=27% Similarity=0.349 Sum_probs=170.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .++.++|++|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 46999999999999999999999999999999999999886 9999999998764 246799999999888999999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+.+.....+... . + ....++.+++.+||++..++.++ .|
T Consensus 92 e~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~-----~L 132 (220)
T cd03293 92 DNVALGLELQGVPK----------A----------E--------------ARERAEELLELVGLSGFENAYPH-----QL 132 (220)
T ss_pred HHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHcCChhhhhCCcc-----cC
Confidence 99988643322100 0 0 01134668899999887777765 49
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc--CCe
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS--EGQ 421 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~--~G~ 421 (824)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|++ .++.++||++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCE
Confidence 999999999999999999999999999999999999999999998765578988887765 46788999999999 799
Q ss_pred EEEecChh
Q 003389 422 IVYQGPRD 429 (824)
Q Consensus 422 iv~~G~~~ 429 (824)
+++.++.+
T Consensus 212 i~~~~~~~ 219 (220)
T cd03293 212 IVAEVEVD 219 (220)
T ss_pred EEEEEEec
Confidence 99888753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=344.14 Aligned_cols=209 Identities=30% Similarity=0.439 Sum_probs=173.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV 262 (824)
+.+|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 46999999999999999999999999999999999999886 9999999998754322 3579999999988889999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.++....+...+ ++.. +....++.+++.+||++..++.++ .
T Consensus 92 ~e~l~~~~~~~~~~~~-----------------~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~-----~ 136 (239)
T cd03296 92 FDNVAFGLRVKPRSER-----------------PPEA-------------EIRAKVHELLKLVQLDWLADRYPA-----Q 136 (239)
T ss_pred HHHHhhhhhhcccccc-----------------CCHH-------------HHHHHHHHHHHHcCChhhhhcChh-----h
Confidence 9999886432211000 0000 001134568899999877777665 4
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.++||++++|++|++
T Consensus 137 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRI 215 (239)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999875578998887765 467889999999999999
Q ss_pred EEecChhhH
Q 003389 423 VYQGPRDNV 431 (824)
Q Consensus 423 v~~G~~~~~ 431 (824)
++.|+++++
T Consensus 216 ~~~~~~~~~ 224 (239)
T cd03296 216 EQVGTPDEV 224 (239)
T ss_pred EEecCHHHH
Confidence 999998776
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=342.94 Aligned_cols=214 Identities=25% Similarity=0.383 Sum_probs=173.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|+++|. +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 46999999999999999999999999999999999999886 9999999998765332 2459999999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.+.....+... ..+. +. .... + +....++++++.+||++..++.++
T Consensus 90 ~tv~~~l~~~~~~~~~~~-------~~~~-~~---~~~~--~-----------~~~~~~~~~l~~~~l~~~~~~~~~--- 142 (236)
T cd03219 90 LTVLENVMVAAQARTGSG-------LLLA-RA---RREE--R-----------EARERAEELLERVGLADLADRPAG--- 142 (236)
T ss_pred CCHHHHHHHHHhhccccc-------cccc-cc---cccH--H-----------HHHHHHHHHHHHcCccchhhCChh---
Confidence 999999988653321100 0000 00 0000 0 011235678899999887777665
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .++|+|++.|++ .++.++||++++|++
T Consensus 143 --~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l~~ 218 (236)
T cd03219 143 --ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDM-DVVMSLADRVTVLDQ 218 (236)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEeC
Confidence 4999999999999999999999999999999999999999999999986 588988887665 477889999999999
Q ss_pred CeEEEecChhhH
Q 003389 420 GQIVYQGPRDNV 431 (824)
Q Consensus 420 G~iv~~G~~~~~ 431 (824)
|++++.|+++++
T Consensus 219 G~i~~~~~~~~~ 230 (236)
T cd03219 219 GRVIAEGTPDEV 230 (236)
T ss_pred CEEEeecCHHHh
Confidence 999999998776
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=337.68 Aligned_cols=200 Identities=29% Similarity=0.395 Sum_probs=169.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV 262 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTV 89 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCH
Confidence 46999999999999999999999999999999999999887 9999999998754322 3579999999988889999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.+.....+.. ..+ ....++++++.+||++..++.++ .
T Consensus 90 ~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (213)
T cd03301 90 YDNIAFGLKLRKVP----------KDE------------------------IDERVREVAELLQIEHLLDRKPK-----Q 130 (213)
T ss_pred HHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCCHHHHhCChh-----h
Confidence 99998864332210 000 01134668899999888887765 4
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|+++|++ .++.++||++++|++|++
T Consensus 131 LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875578999887765 477889999999999999
Q ss_pred EEec
Q 003389 423 VYQG 426 (824)
Q Consensus 423 v~~G 426 (824)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03301 210 QQIG 213 (213)
T ss_pred EecC
Confidence 9876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=343.27 Aligned_cols=214 Identities=29% Similarity=0.375 Sum_probs=173.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d~~~ 257 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 46999999999999999999999999999999999999886 999999999876432 135699999999899
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||+||+.++...... ....+ ....+ . .....++.+++.+||.+..++.++
T Consensus 91 ~~~tv~~~l~~~~~~~~~-----~~~~~------~~~~~-~--------------~~~~~~~~~l~~~~l~~~~~~~~~- 143 (241)
T cd03256 91 ERLSVLENVLSGRLGRRS-----TWRSL------FGLFP-K--------------EEKQRALAALERVGLLDKAYQRAD- 143 (241)
T ss_pred ccCcHHHHHHhhhcccch-----hhhhh------cccCc-H--------------HHHHHHHHHHHHcCChhhhCCCcc-
Confidence 999999999875321100 00000 00000 0 001234567889999877776654
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.|++ +++.++||++++|
T Consensus 144 ----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l 218 (241)
T cd03256 144 ----QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGL 218 (241)
T ss_pred ----cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 59999999999999999999999999999999999999999999999865578888887665 4778899999999
Q ss_pred cCCeEEEecChhhHH
Q 003389 418 SEGQIVYQGPRDNVL 432 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (824)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (241)
T cd03256 219 KDGRIVFDGPPAELT 233 (241)
T ss_pred ECCEEEeecCHHHhh
Confidence 999999999988753
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=355.98 Aligned_cols=206 Identities=30% Similarity=0.421 Sum_probs=174.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~lT 261 (824)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 46999999999999999999999999999999999999887 999999998874321 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.+.+...+... . + ....++.+++.+||++..++.+++
T Consensus 94 v~e~l~~~~~~~~~~~----------~----------~--------------~~~~~~~ll~~~~l~~~~~~~~~~---- 135 (303)
T TIGR01288 94 VRENLLVFGRYFGMST----------R----------E--------------IEAVIPSLLEFARLESKADVRVAL---- 135 (303)
T ss_pred HHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHCCChhHhcCchhh----
Confidence 9999987543322100 0 0 011245678899999888887764
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|+++|++ .++.++||++++|++|+
T Consensus 136 -LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~-~~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 136 -LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLESGR 212 (303)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999976 488988877654 47889999999999999
Q ss_pred EEEecChhhHHH
Q 003389 422 IVYQGPRDNVLE 433 (824)
Q Consensus 422 iv~~G~~~~~~~ 433 (824)
+++.|+++++..
T Consensus 213 i~~~g~~~~~~~ 224 (303)
T TIGR01288 213 KIAEGRPHALID 224 (303)
T ss_pred EEEEcCHHHHHh
Confidence 999999988753
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=340.73 Aligned_cols=195 Identities=24% Similarity=0.346 Sum_probs=164.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d~~~ 257 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 35999999999999999999999999999999999999887 999999999875432 135799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||+||+.+.....+... .+ ....++++++.+||++..++.++
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~- 137 (216)
T TIGR00960 93 SDRTVYDNVAFPLRIIGVPP----------RD------------------------ANERVSAALEKVGLEGKAHALPM- 137 (216)
T ss_pred ccccHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCChhhhhCChh-
Confidence 99999999988654322100 00 01134668899999887777765
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ +++.++||++++|
T Consensus 138 ----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l 211 (216)
T TIGR00960 138 ----QLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDI-NLVETYRHRTLTL 211 (216)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 4999999999999999999999999999999999999999999999975 478888877654 4777899999999
Q ss_pred cCCeE
Q 003389 418 SEGQI 422 (824)
Q Consensus 418 ~~G~i 422 (824)
++|++
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99974
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=353.03 Aligned_cols=219 Identities=22% Similarity=0.335 Sum_probs=177.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-------CCCceEEEEecCCC-
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDL- 255 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-------~~~~~i~yv~Q~d~- 255 (824)
.++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.++||+|++.
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 45999999999999999999999999999999999999987 99999999987521 11357999999852
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~ 334 (824)
.+...||+||+.|+....+.. ..+ ....++.+++.+||. +..++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVS----------EED------------------------AKQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHCCCChhhhhCC
Confidence 344579999999875432211 000 011356789999996 556766
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
+. .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..|.|||+++|+. .++.++||+|
T Consensus 143 ~~-----~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv 216 (290)
T PRK13634 143 PF-----ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQI 216 (290)
T ss_pred cc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEE
Confidence 55 59999999999999999999999999999999999999999999999875688988887654 4788899999
Q ss_pred EEEcCCeEEEecChhhHH---HHHHHcCCCCCCC
Q 003389 415 ILLSEGQIVYQGPRDNVL---EFFEHMGFKCPER 445 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~ 445 (824)
++|++|++++.|+++++. ..+...|..+|..
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 250 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPET 250 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCHH
Confidence 999999999999988764 2344556665543
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=340.61 Aligned_cols=204 Identities=24% Similarity=0.378 Sum_probs=172.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 46999999999999999999999999999999999999987 9999999998754321 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.+.....+.. .. + ....++.+++.+||++..++.++
T Consensus 90 ~tv~~~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~--- 132 (232)
T cd03218 90 LTVEENILAVLEIRGLS----------KK----------E--------------REEKLEELLEEFHITHLRKSKAS--- 132 (232)
T ss_pred CcHHHHHHHHHHhcCCC----------HH----------H--------------HHHHHHHHHHHcCChhhhhCChh---
Confidence 99999998764322110 00 0 01134668889999887777765
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.++||++++|++
T Consensus 133 --~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~ 208 (232)
T cd03218 133 --SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVR-ETLSITDRAYIIYE 208 (232)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 4999999999999999999999999999999999999999999999976 4788888876654 78899999999999
Q ss_pred CeEEEecChhhH
Q 003389 420 GQIVYQGPRDNV 431 (824)
Q Consensus 420 G~iv~~G~~~~~ 431 (824)
|++++.|+.+++
T Consensus 209 G~i~~~~~~~~~ 220 (232)
T cd03218 209 GKVLAEGTPEEI 220 (232)
T ss_pred CeEEEEeCHHHh
Confidence 999999998765
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=339.26 Aligned_cols=203 Identities=29% Similarity=0.413 Sum_probs=171.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--CCCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~i~yv~Q~d~~~~~lT 261 (824)
+++|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 56999999999999999999999999999999999999887 99999999987532 12356999999998888999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.+..+..+... .+ ....++++++.+||.+..++.++
T Consensus 92 v~~~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~----- 132 (220)
T cd03263 92 VREHLRFYARLKGLPK----------SE------------------------IKEEVELLLRVLGLTDKANKRAR----- 132 (220)
T ss_pred HHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCHHHHhChhh-----
Confidence 9999988654332110 00 01124568889999888777765
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ +.|+|++.|++. ++.++||++++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD-EAEALCDRIAIMSDGK 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHH-HHHHhcCEEEEEECCE
Confidence 4999999999999999999999999999999999999999999999875 578888776654 6778999999999999
Q ss_pred EEEecChhhH
Q 003389 422 IVYQGPRDNV 431 (824)
Q Consensus 422 iv~~G~~~~~ 431 (824)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999988754
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=347.30 Aligned_cols=208 Identities=23% Similarity=0.311 Sum_probs=175.7
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-------CceEEEEecCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHD 254 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d 254 (824)
+.+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 4567999999999999999999999999999999999999987 9999999998754321 35699999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
.+++.+||+||+.+.....+... .+ ....++++++.+||.+..++.
T Consensus 112 ~~~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~ 157 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQGVPR----------AE------------------------REERAAEALELVGLEGWEHKY 157 (269)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCHhHhhCC
Confidence 99999999999988653322100 00 011345688999998888877
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.++||++
T Consensus 158 ~~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v 231 (269)
T cd03294 158 PD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRI 231 (269)
T ss_pred cc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEE
Confidence 76 49999999999999999999999999999999999999999999999865578988887654 4678899999
Q ss_pred EEEcCCeEEEecChhhHH
Q 003389 415 ILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (824)
++|++|++++.|+++++.
T Consensus 232 ~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 232 AIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999987764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=348.96 Aligned_cols=216 Identities=26% Similarity=0.345 Sum_probs=176.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCC-CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL-HHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~-~~~~ 259 (824)
..+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++|++|++. .++.
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFS 94 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhcc
Confidence 45999999999999999999999999999999999999987 9999999998764321 356999999863 4566
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||.||+.|+....+.. +. +....++++++.+||.+..++.+.
T Consensus 95 ~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~--- 137 (274)
T PRK13647 95 STVWDDVAFGPVNMGLD----------KD------------------------EVERRVEEALKAVRMWDFRDKPPY--- 137 (274)
T ss_pred CcHHHHHHhhHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCHHHhcCChh---
Confidence 89999998864322110 00 001135678899999888887776
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +.|+|+++|+ .+++.++||+|++|++
T Consensus 138 --~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~-~~~~~~~~d~i~~l~~ 213 (274)
T PRK13647 138 --HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHD-VDLAAEWADQVIVLKE 213 (274)
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 49999999999999999999999999999999999999999999999864 8899888766 4467789999999999
Q ss_pred CeEEEecChhhHH--HHHHHcCCCCC
Q 003389 420 GQIVYQGPRDNVL--EFFEHMGFKCP 443 (824)
Q Consensus 420 G~iv~~G~~~~~~--~~f~~~G~~~p 443 (824)
|++++.|+++++. +.+...|+++|
T Consensus 214 G~i~~~g~~~~~~~~~~~~~~~~~~~ 239 (274)
T PRK13647 214 GRVLAEGDKSLLTDEDIVEQAGLRLP 239 (274)
T ss_pred CEEEEECCHHHhcCHHHHHHcCCCCC
Confidence 9999999987542 23444555554
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=350.67 Aligned_cols=224 Identities=25% Similarity=0.366 Sum_probs=181.9
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-------CCCceEEEEecCC-CC
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHD-LH 256 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-------~~~~~i~yv~Q~d-~~ 256 (824)
.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|+++|.++... ..++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 5999999999999999999999999999999999999987 99999999987521 1245799999986 23
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMV 335 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~v 335 (824)
+...||.||+.|+....+.. +.+ ....+.++++.+||. +..++.+
T Consensus 97 l~~~tv~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~L~~~~~~~~~ 142 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIP----------KEK------------------------AEKIAAEKLEMVGLADEFWEKSP 142 (288)
T ss_pred cccchHHHHHHhHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCCChhhccCCc
Confidence 33469999999875433211 000 011356688899996 4556555
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|||+++|++ .++.++||+|+
T Consensus 143 -----~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~-~~~~~~~dri~ 215 (288)
T PRK13643 143 -----FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLM-DDVADYADYVY 215 (288)
T ss_pred -----ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEE
Confidence 45999999999999999999999999999999999999999999999976 488998887664 57888999999
Q ss_pred EEcCCeEEEecChhhHH---HHHHHcCCCCCCCCCHHHHH
Q 003389 416 LLSEGQIVYQGPRDNVL---EFFEHMGFKCPERKGVADFL 452 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~~~~adfl 452 (824)
+|++|+++++|+++++. ++++..|+.+|.....++.+
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 99999999999998874 35667788887755554444
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=387.78 Aligned_cols=253 Identities=25% Similarity=0.324 Sum_probs=197.2
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.++.+..++|+.++++.++|.. . +........-.++++|+++.+..
T Consensus 418 ~~~~~~~~~ri~~~l~~~~e~~-----~--~~~~~~~~~~~I~~~nvsf~Y~~--------------------------- 463 (686)
T TIGR03797 418 ILAVIPLWERAKPILEALPEVD-----E--AKTDPGKLSGAIEVDRVTFRYRP--------------------------- 463 (686)
T ss_pred HHHHHHHHHHHHHHhcCCcccc-----c--CcCCCCCCCceEEEEEEEEEcCC---------------------------
Confidence 4556677788888777655421 0 00001111236888898876421
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
.++++|+|+|++|+|||.+||+||||||||||+|+|+|+++|+ +|+|.+||+++.+..+ ++.++||+|+
T Consensus 464 -----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 535 (686)
T TIGR03797 464 -----DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQN 535 (686)
T ss_pred -----CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccC
Confidence 1246999999999999999999999999999999999999997 9999999999887643 5789999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+++. |++|||.++.. .+.+++.+++...+.+. . .-.|++..||
T Consensus 536 ~~lf~g-TI~eNi~~~~~--------------------------~~~e~i~~al~~a~l~~------~--i~~lp~G~dt 580 (686)
T TIGR03797 536 GRLMSG-SIFENIAGGAP--------------------------LTLDEAWEAARMAGLAE------D--IRAMPMGMHT 580 (686)
T ss_pred CccCcc-cHHHHHhcCCC--------------------------CCHHHHHHHHHHcCcHH------H--HHhccccccc
Confidence 887764 99999987521 12233344444333222 1 2246778899
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+|+. ...||||||||++|||||+++|++|+||||||+||+.++.+|.+.|+++ ++|+|++.|++ ++.+.||+
T Consensus 581 ~ige~-G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~ 653 (686)
T TIGR03797 581 VISEG-GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADR 653 (686)
T ss_pred cccCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCE
Confidence 99964 5679999999999999999999999999999999999999999999885 46888888876 56788999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|+++++|+++++.+
T Consensus 654 Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 654 IYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998763
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=342.14 Aligned_cols=206 Identities=28% Similarity=0.397 Sum_probs=172.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 46999999999999999999999999999999999999886 9999999998754322 35799999999999999
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc--cccccccCc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI--CADTMVGDE 338 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~--~~dt~vg~~ 338 (824)
||+||+.+.....+... . + ....+.++++.+||.+ ..++.+.
T Consensus 91 tv~e~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~l~l~~~~~~~~~~~-- 134 (242)
T cd03295 91 TVEENIALVPKLLKWPK----------E----------K--------------IRERADELLALVGLDPAEFADRYPH-- 134 (242)
T ss_pred cHHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHcCCCcHHHHhcChh--
Confidence 99999988643322100 0 0 0112456888999985 5565554
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|+++|++ .++.++||++++|+
T Consensus 135 ---~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~ 210 (242)
T cd03295 135 ---ELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMK 210 (242)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEE
Confidence 59999999999999999999999999999999999999999999999865578888887765 46788999999999
Q ss_pred CCeEEEecChhhHH
Q 003389 419 EGQIVYQGPRDNVL 432 (824)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (824)
+|++++.|+++++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999987663
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=338.62 Aligned_cols=195 Identities=26% Similarity=0.381 Sum_probs=164.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-------CCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 46999999999999999999999999999999999999887 999999999876432 13579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++.+||+||+.+.....+... .+ ....++++++.+||++..++.++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~ 139 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPK----------KE------------------------RRERAEELLERVGLGDRLNHYPS 139 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhhcChh
Confidence 999999999998654322100 00 01134668899999887777665
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.|++. ++. .||++++
T Consensus 140 -----~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~ 212 (218)
T cd03255 140 -----ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIE 212 (218)
T ss_pred -----hcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEE
Confidence 499999999999999999999999999999999999999999999998645789999887764 454 8999999
Q ss_pred EcCCeE
Q 003389 417 LSEGQI 422 (824)
Q Consensus 417 L~~G~i 422 (824)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=342.86 Aligned_cols=214 Identities=26% Similarity=0.334 Sum_probs=172.3
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLH 256 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d~~ 256 (824)
++++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~ 90 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNL 90 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcc
Confidence 356999999999999999999999999999999999999886 999999998875432 24569999999989
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++.+||+||+.++....... ...+. ...+ . .....++++++.+||.+..++.+.
T Consensus 91 ~~~~tv~~~l~~~~~~~~~~-----~~~~~------~~~~-~--------------~~~~~~~~~l~~~~l~~~~~~~~~ 144 (243)
T TIGR02315 91 IERLTVLENVLHGRLGYKPT-----WRSLL------GRFS-E--------------EDKERALSALERVGLADKAYQRAD 144 (243)
T ss_pred cccccHHHHHhhcccccccc-----hhhhh------cccc-H--------------HHHHHHHHHHHHcCcHhhhcCCcc
Confidence 99999999998753211000 00000 0000 0 001234668889999877776654
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|+++|++ .++.++||++++
T Consensus 145 -----~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~ 218 (243)
T TIGR02315 145 -----QLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVG 218 (243)
T ss_pred -----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEE
Confidence 59999999999999999999999999999999999999999999999765578888877665 467789999999
Q ss_pred EcCCeEEEecChhhH
Q 003389 417 LSEGQIVYQGPRDNV 431 (824)
Q Consensus 417 L~~G~iv~~G~~~~~ 431 (824)
|++|++++.|+++++
T Consensus 219 l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 219 LKAGEIVFDGAPSEL 233 (243)
T ss_pred EECCEEEecCCHHHh
Confidence 999999999988764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=362.26 Aligned_cols=208 Identities=29% Similarity=0.450 Sum_probs=175.6
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGE 259 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~ 259 (824)
++++++|+|+++++|+.++|+|+||||||||+++|+|+++|+ +|+|.+||++..+.. .+++++||+|++.+++.
T Consensus 333 g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g 409 (559)
T COG4988 333 GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG 409 (559)
T ss_pred CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCccccc
Confidence 347999999999999999999999999999999999999987 999999999987765 36899999999887765
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
|+|||+.++. |+.+.+++.+++...+ +.+.+.-++..||.+|+ .
T Consensus 410 -TireNi~l~~-------------------------~~~s~e~i~~al~~a~---------l~~~v~~p~GLdt~ige-~ 453 (559)
T COG4988 410 -TIRENILLAR-------------------------PDASDEEIIAALDQAG---------LLEFVPKPDGLDTVIGE-G 453 (559)
T ss_pred -cHHHHhhccC-------------------------CcCCHHHHHHHHHHhc---------HHHhhcCCCcccchhcc-C
Confidence 9999999862 2222233333332222 23333336788999995 6
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.++|||||+|||++||||+.+++++++||||++||.++++.|.+.|.++++ ++|++++.|++ +....+|+|++|++
T Consensus 454 G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl--~~~~~~D~I~vld~ 529 (559)
T COG4988 454 GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRL--EDAADADRIVVLDN 529 (559)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcCh--HHHhcCCEEEEecC
Confidence 788999999999999999999999999999999999999999999999986 58999988865 46678999999999
Q ss_pred CeEEEecChhhHHH
Q 003389 420 GQIVYQGPRDNVLE 433 (824)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (824)
|+++..|.++++.+
T Consensus 530 G~l~~~g~~~~L~~ 543 (559)
T COG4988 530 GRLVEQGTHEELSE 543 (559)
T ss_pred CceeccCCHHHHhh
Confidence 99999999998853
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=360.92 Aligned_cols=218 Identities=21% Similarity=0.288 Sum_probs=181.1
Q ss_pred hhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-------
Q 003389 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------- 243 (824)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~------- 243 (824)
+....+.+.+ +...+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.....
T Consensus 29 ~~~~~~~~~~-~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~ 104 (400)
T PRK10070 29 LSKEQILEKT-GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVR 104 (400)
T ss_pred ccHHHHHhhc-CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHH
Confidence 3333343333 3346899999999999999999999999999999999999987 9999999998765322
Q ss_pred CceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHH
Q 003389 244 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 323 (824)
Q Consensus 244 ~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~ 323 (824)
++.++|++|+..+++.+||+||+.|.....+... .+ ....++++++
T Consensus 105 ~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~----------~~------------------------~~~~~~e~L~ 150 (400)
T PRK10070 105 RKKIAMVFQSFALMPHMTVLDNTAFGMELAGINA----------EE------------------------RREKALDALR 150 (400)
T ss_pred hCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHH
Confidence 2479999999999999999999998765432210 00 0113466899
Q ss_pred HcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 324 ILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 324 ~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
.+||++..++.+. .|||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|+++.+..++|+|+++|+
T Consensus 151 ~~gL~~~~~~~~~-----~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd- 224 (400)
T PRK10070 151 QVGLENYAHSYPD-----ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD- 224 (400)
T ss_pred HcCCChhhhcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECC-
Confidence 9999887777665 5999999999999999999999999999999999999999999999976568898888765
Q ss_pred chhHHhhcCeEEEEcCCeEEEecChhhHH
Q 003389 404 APETYDLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 404 ~~e~~~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
..++.++||+|++|++|+++..|+++++.
T Consensus 225 ~~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 225 LDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred HHHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 45788999999999999999999988764
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=357.49 Aligned_cols=257 Identities=24% Similarity=0.395 Sum_probs=217.4
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.|....=+|++.+++.+++| +.+.....++..++..+.|+|+++.++
T Consensus 502 iQ~nfiDmEnmfdllkee~e-----Vvd~P~a~pl~~~~G~i~fsnvtF~Y~---------------------------- 548 (790)
T KOG0056|consen 502 IQKNFIDMENMFDLLKEEPE-----VVDLPGAPPLKVTQGKIEFSNVTFAYD---------------------------- 548 (790)
T ss_pred HHHhhhhHHHHHHHhhcCch-----hhcCCCCCCccccCCeEEEEEeEEecC----------------------------
Confidence 34556668899999999988 777777777888899999999998753
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~ 253 (824)
.++++|+||||++.||+.+||+||||+||||++++|-.+++.+ +|.|++||+++.... .++.||.||||
T Consensus 549 -----p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQD 620 (790)
T KOG0056|consen 549 -----PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQD 620 (790)
T ss_pred -----CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCc
Confidence 3467999999999999999999999999999999999999886 999999999987543 35789999998
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
..+|.+ |+..|+.|+ +|++..+++.+|++.++.++ +++++++.++|
T Consensus 621 tvLFNd-TI~yNIrya-------------------------k~~AsneevyaAAkAA~IHd--------rIl~fPegY~t 666 (790)
T KOG0056|consen 621 TVLFND-TILYNIRYA-------------------------KPSASNEEVYAAAKAAQIHD--------RILQFPEGYNT 666 (790)
T ss_pred ceeecc-eeeeheeec-------------------------CCCCChHHHHHHHHHhhHHH--------HHhcCchhhhh
Confidence 777765 999999886 34444444555554444333 47899999999
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
+||++..+ |||||||||+|||++++.|.+++|||.||+||..++.+|..+|.+++. ++|.|++-|.- ++.-.+|.
T Consensus 667 ~VGERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRL--STivnAD~ 741 (790)
T KOG0056|consen 667 RVGERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRL--STIVNADL 741 (790)
T ss_pred hhhhcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeee--hheecccE
Confidence 99987776 999999999999999999999999999999999999999999999996 56666665654 46667999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|+++++|+|++.|.+++++.
T Consensus 742 ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 742 ILVISNGRIVERGRHEELLK 761 (790)
T ss_pred EEEEeCCeEeecCcHHHHHh
Confidence 99999999999999999864
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=348.73 Aligned_cols=217 Identities=23% Similarity=0.311 Sum_probs=179.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCC-CCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD-LHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d-~~~~~ 259 (824)
+.+|+|||++|++||+++|+||||||||||+++|+|+++|. +|+|.++|.++..... ++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 35999999999999999999999999999999999999987 9999999998854322 35799999986 36778
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.|+....+.. +.+ ....++++++.+||++..+..++
T Consensus 97 ~tv~eni~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~~--- 139 (279)
T PRK13650 97 ATVEDDVAFGLENKGIP----------HEE------------------------MKERVNEALELVGMQDFKEREPA--- 139 (279)
T ss_pred ccHHHHHHhhHHhCCCC----------HHH------------------------HHHHHHHHHHHCCCHhHhhCCcc---
Confidence 89999999874332211 000 01235678999999887777765
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++..|.|+|+++|+.. ++ ..||++++|++
T Consensus 140 --~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~ 215 (279)
T PRK13650 140 --RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN 215 (279)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC
Confidence 499999999999999999999999999999999999999999999998755889999887754 55 57999999999
Q ss_pred CeEEEecChhhHHH---HHHHcCCCCCC
Q 003389 420 GQIVYQGPRDNVLE---FFEHMGFKCPE 444 (824)
Q Consensus 420 G~iv~~G~~~~~~~---~f~~~G~~~p~ 444 (824)
|+++..|+++++.. .++..|+++|.
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 243 (279)
T PRK13650 216 GQVESTSTPRELFSRGNDLLQLGLDIPF 243 (279)
T ss_pred CEEEEECCHHHHHcChHHHHHcCCCCcH
Confidence 99999999987653 34555666544
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=336.11 Aligned_cols=203 Identities=25% Similarity=0.387 Sum_probs=169.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 46999999999999999999999999999999999999987 9999999988754322 3569999999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc-CCCccccccccCc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDE 338 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-gL~~~~dt~vg~~ 338 (824)
+||+||+.+.....+. . + ....++.+++.+ ++++..++.+.
T Consensus 90 ~t~~~~l~~~~~~~~~------------~----------~--------------~~~~~~~~l~~~~~l~~~~~~~~~-- 131 (222)
T cd03224 90 LTVEENLLLGAYARRR------------A----------K--------------RKARLERVYELFPRLKERRKQLAG-- 131 (222)
T ss_pred CcHHHHHHHHhhhcCc------------h----------h--------------HHHHHHHHHHHHHhhhhhhhCchh--
Confidence 9999999886432210 0 0 001233456666 46666666655
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+++|++ .++.++||++++|+
T Consensus 132 ---~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~ 206 (222)
T cd03224 132 ---TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNA-RFALEIADRAYVLE 206 (222)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhccEEEEee
Confidence 4999999999999999999999999999999999999999999999976 578888887654 47788999999999
Q ss_pred CCeEEEecChhhHH
Q 003389 419 EGQIVYQGPRDNVL 432 (824)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (824)
+|+++..|+.+++.
T Consensus 207 ~G~i~~~~~~~~~~ 220 (222)
T cd03224 207 RGRVVLEGTAAELL 220 (222)
T ss_pred CCeEEEeCCHHHHh
Confidence 99999999987653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=352.57 Aligned_cols=206 Identities=29% Similarity=0.446 Sum_probs=176.7
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~l 260 (824)
++.+|+|+||+|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.+
T Consensus 14 ~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~ 90 (301)
T TIGR03522 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDM 90 (301)
T ss_pred CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCC
Confidence 356999999999999999999999999999999999999987 999999999875421 246799999999999999
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||.||+.+.+++++... .+ ....++.+++.+||++..++.+++
T Consensus 91 tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~--- 133 (301)
T TIGR03522 91 YVREYLQFIAGIYGMKG----------QL------------------------LKQRVEEMIELVGLRPEQHKKIGQ--- 133 (301)
T ss_pred cHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHCCCchHhcCchhh---
Confidence 99999998765543210 00 011346788999999888887764
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|+ .+++.++||+|++|++|
T Consensus 134 --LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sH~-l~~~~~~~d~i~~l~~G 208 (301)
T TIGR03522 134 --LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHI-MQEVEAICDRVIIINKG 208 (301)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCC-HHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999863 6888887665 45889999999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
++++.|+.+++..
T Consensus 209 ~i~~~g~~~~~~~ 221 (301)
T TIGR03522 209 KIVADKKLDELSA 221 (301)
T ss_pred EEEEeCCHHHHHH
Confidence 9999999998754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=338.35 Aligned_cols=201 Identities=19% Similarity=0.285 Sum_probs=168.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-------CceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d~~ 256 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++..... ++.++|++|+..+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 46999999999999999999999999999999999999886 9999999998765422 2569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++.+||+||+.+.....+... .+ ....+.++++.+||++..++.++
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~gl~~~~~~~~~ 144 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKKP----------AE------------------------INSRALEMLAAVGLEHRANHRPS 144 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhhCChh
Confidence 999999999998643221100 00 01134568899999887777665
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..|.|+|++.|++. ++.. +|++++
T Consensus 145 -----~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~ 217 (233)
T PRK11629 145 -----ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLE 217 (233)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEE
Confidence 499999999999999999999999999999999999999999999997645789999877654 4544 689999
Q ss_pred EcCCeEEEecCh
Q 003389 417 LSEGQIVYQGPR 428 (824)
Q Consensus 417 L~~G~iv~~G~~ 428 (824)
|++|++++.|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999988763
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=334.75 Aligned_cols=198 Identities=26% Similarity=0.358 Sum_probs=167.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..++.++|++|+..+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 46999999999999999999999999999999999999886 9999999988754 2356799999999889999999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+.+....++... .+ ....++++++.+||++..++.++ .|
T Consensus 89 e~l~~~~~~~~~~~--------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~-----~L 129 (210)
T cd03269 89 DQLVYLAQLKGLKK--------------------EE--------------ARRRIDEWLERLELSEYANKRVE-----EL 129 (210)
T ss_pred HHHHHHHHHcCCCh--------------------HH--------------HHHHHHHHHHHcCChHHHhCcHh-----hC
Confidence 99988644322100 00 01134668889999887777665 49
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEE
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv 423 (824)
||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++.|++ .++.++||++++|++|+++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQM-ELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCH-HHHHHhhhEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999876 478888876654 4677899999999999998
Q ss_pred Eec
Q 003389 424 YQG 426 (824)
Q Consensus 424 ~~G 426 (824)
+.|
T Consensus 208 ~~~ 210 (210)
T cd03269 208 LYG 210 (210)
T ss_pred ecC
Confidence 764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=333.49 Aligned_cols=195 Identities=29% Similarity=0.429 Sum_probs=166.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-CCCceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-VPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-~~~~~i~yv~Q~d~~~~~lTV 262 (824)
+++|+|+|+++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++... ..++.++|++|++.+++.+||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 46999999999999999999999999999999999999886 99999999877532 124579999999988999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.+.....+. ....++++++.+||++..++.++ .
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 126 (208)
T cd03268 90 RENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKVK-----G 126 (208)
T ss_pred HHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhHh-----h
Confidence 9999886432110 01124567889999887777765 4
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||++++|++|++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLL-SEIQKVADRIGIINKGKL 204 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999986 578888887654 467789999999999999
Q ss_pred EEec
Q 003389 423 VYQG 426 (824)
Q Consensus 423 v~~G 426 (824)
++.|
T Consensus 205 ~~~g 208 (208)
T cd03268 205 IEEG 208 (208)
T ss_pred EecC
Confidence 8765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=332.65 Aligned_cols=192 Identities=28% Similarity=0.342 Sum_probs=162.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCC-CCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDL-HHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~-~~~~lTV 262 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.....++.++|++|++. .+..+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 56999999999999999999999999999999999999987 9999999998754233467999999864 3456799
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.+.....+. ....++++++.+||.+..++.++ .
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 126 (205)
T cd03226 90 REELLLGLKELDA--------------------------------------GNEQAETVLKDLDLYALKERHPL-----S 126 (205)
T ss_pred HHHHhhhhhhcCc--------------------------------------cHHHHHHHHHHcCCchhcCCCch-----h
Confidence 9999875321100 00124568899999888887765 4
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+++|++ .++.++||++++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHDY-EFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999976 478988887665 467789999999999997
Q ss_pred E
Q 003389 423 V 423 (824)
Q Consensus 423 v 423 (824)
|
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=344.97 Aligned_cols=207 Identities=23% Similarity=0.353 Sum_probs=173.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d~~~ 257 (824)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|+..++
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 46999999999999999999999999999999999999886 999999998875432 135699999998889
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||.||+.+....... ....+ ....+..+++.+||.+..++.++
T Consensus 97 ~~~tv~enl~~~~~~~~~---------~~~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~- 142 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQ---------LPAPL------------------------LHSTVMMKLEAVGLRGAAKLMPS- 142 (269)
T ss_pred CCCCHHHHHHHHHHHccC---------CCHHH------------------------HHHHHHHHHHHcCChhhhhCChh-
Confidence 999999999875321100 00000 01124567889999988887765
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|+++|+ ..++.++||++++|
T Consensus 143 ----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~-~~~~~~~~d~v~~l 217 (269)
T PRK11831 143 ----ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD-VPEVLSIADHAYIV 217 (269)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC-HHHHHHhhCEEEEE
Confidence 4999999999999999999999999999999999999999999999986557888888765 45788899999999
Q ss_pred cCCeEEEecChhhHH
Q 003389 418 SEGQIVYQGPRDNVL 432 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (824)
++|++++.|+++++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 218 ADKKIVAHGSAQALQ 232 (269)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988763
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=337.24 Aligned_cols=204 Identities=23% Similarity=0.340 Sum_probs=168.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc-----CCCCCCcceEeeCCcccCCCC-----CCceEEEEecC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL-----GKDLRASGKITYCGHELNEFV-----PQRTCAYISQH 253 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l-----~~~~~~sG~I~~nG~~~~~~~-----~~~~i~yv~Q~ 253 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|++ +|. +|+|.++|+++.... .++.++|++|+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 46999999999999999999999999999999999999 776 999999999875432 24579999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.++ .+||+||+.++....+... +. + ....++++++.+||.+..+.
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~~~---------~~----------~--------------~~~~~~~~l~~~~l~~~~~~ 135 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGIKL---------KE----------E--------------LDERVEEALRKAALWDEVKD 135 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCCCc---------HH----------H--------------HHHHHHHHHHHcCCChHHhc
Confidence 8877 7999999988654322100 00 0 01134568889999876665
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+. ++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++. .|+|+++|++ +++.++||+
T Consensus 136 ~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~-~~~~~~~d~ 209 (227)
T cd03260 136 RLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNM-QQAARVADR 209 (227)
T ss_pred cCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccH-HHHHHhCCE
Confidence 530 2469999999999999999999999999999999999999999999999763 7888877654 477889999
Q ss_pred EEEEcCCeEEEecChhh
Q 003389 414 IILLSEGQIVYQGPRDN 430 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~ 430 (824)
+++|++|++++.|++++
T Consensus 210 i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 210 TAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEEeCCEEEEecCccc
Confidence 99999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=347.99 Aligned_cols=219 Identities=21% Similarity=0.362 Sum_probs=176.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-------------------CCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------------------VPQ 244 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-------------------~~~ 244 (824)
+++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++... ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 45999999999999999999999999999999999999987 99999999876432 114
Q ss_pred ceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHH
Q 003389 245 RTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 322 (824)
Q Consensus 245 ~~i~yv~Q~d--~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL 322 (824)
+.++||+|++ .+++ .||+||+.|+....+.. .. + ....+++++
T Consensus 116 ~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~----------~~-------------~-----------~~~~~~~~l 160 (320)
T PRK13631 116 RRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVK----------KS-------------E-----------AKKLAKFYL 160 (320)
T ss_pred hcEEEEEECchhcccc-chHHHHHHhhHHhcCCC----------HH-------------H-----------HHHHHHHHH
Confidence 6799999986 3454 59999998864322110 00 0 011346688
Q ss_pred HHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEc
Q 003389 323 KILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401 (824)
Q Consensus 323 ~~lgL~-~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~ 401 (824)
+.+||+ +..++.+ ..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ .+.|+|+++|
T Consensus 161 ~~~gL~~~~~~~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtH 234 (320)
T PRK13631 161 NKMGLDDSYLERSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITH 234 (320)
T ss_pred HHcCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEec
Confidence 999996 4555554 45999999999999999999999999999999999999999999999875 4889888876
Q ss_pred cCchhHHhhcCeEEEEcCCeEEEecChhhHH---HHHHHcCCCCCCCCC
Q 003389 402 QPAPETYDLFDDIILLSEGQIVYQGPRDNVL---EFFEHMGFKCPERKG 447 (824)
Q Consensus 402 q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~~~ 447 (824)
++ .++.++||+|++|++|++++.|+++++. ..++..|+.+|....
T Consensus 235 d~-~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~ 282 (320)
T PRK13631 235 TM-EHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPRVIQ 282 (320)
T ss_pred CH-HHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCChHHH
Confidence 54 4677899999999999999999998774 345667777665433
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=336.92 Aligned_cols=205 Identities=27% Similarity=0.398 Sum_probs=171.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC--CceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP--QRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~--~~~i~yv~Q~d~~~~~lT 261 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... .+.++|++|++.+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 46999999999999999999999999999999999999887 9999999988754321 257999999988888999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.+....++.. ..+ ....++++++.+||++..++.++
T Consensus 91 ~~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~----- 131 (236)
T TIGR03864 91 VRQNLRYHAALHGLS----------RAE------------------------ARERIAALLARLGLAERADDKVR----- 131 (236)
T ss_pred HHHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCChhhhcCChh-----
Confidence 999998764332110 000 01124567889999887777766
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++. .||++++|++|+
T Consensus 132 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~ 209 (236)
T TIGR03864 132 ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGR 209 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCe
Confidence 499999999999999999999999999999999999999999999998645789888877664 454 599999999999
Q ss_pred EEEecChhhHH
Q 003389 422 IVYQGPRDNVL 432 (824)
Q Consensus 422 iv~~G~~~~~~ 432 (824)
+++.|+++++.
T Consensus 210 i~~~~~~~~~~ 220 (236)
T TIGR03864 210 VLADGAAAELR 220 (236)
T ss_pred EEEeCCHHHHH
Confidence 99999987764
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=347.15 Aligned_cols=218 Identities=28% Similarity=0.375 Sum_probs=177.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC--C---CCCceEEEEecCCC-CC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE--F---VPQRTCAYISQHDL-HH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~--~---~~~~~i~yv~Q~d~-~~ 257 (824)
+.+|+|||++|++||+++|+||||||||||+++|+|+++|. +|+|.++|+++.. . ..++.++|++|++. .+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 46999999999999999999999999999999999999987 9999999998741 1 12367999999863 34
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
...||+||+.+.....+.. ..+ ....++++++.+||.+..++.++
T Consensus 96 ~~~tv~e~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~~- 140 (283)
T PRK13636 96 FSASVYQDVSFGAVNLKLP----------EDE------------------------VRKRVDNALKRTGIEHLKDKPTH- 140 (283)
T ss_pred ccccHHHHHHhHHHHcCCC----------HHH------------------------HHHHHHHHHHHCCChhhhhCCcc-
Confidence 5679999998864322210 000 01135678899999887777665
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..|.|+|++.|+. +++.++||++++|
T Consensus 141 ----~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l 215 (283)
T PRK13636 141 ----CLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVM 215 (283)
T ss_pred ----cCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEE
Confidence 49999999999999999999999999999999999999999999999875588988887654 4677899999999
Q ss_pred cCCeEEEecChhhHHH---HHHHcCCCCCC
Q 003389 418 SEGQIVYQGPRDNVLE---FFEHMGFKCPE 444 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 444 (824)
++|++++.|+.+++.. .+...|.++|.
T Consensus 216 ~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T PRK13636 216 KEGRVILQGNPKEVFAEKEMLRKVNLRLPR 245 (283)
T ss_pred ECCEEEEeCCHHHHhcCHHHHHHcCCCCCc
Confidence 9999999999988753 33445555544
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=384.26 Aligned_cols=258 Identities=24% Similarity=0.381 Sum_probs=202.5
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.+.....++|+.++++.++|... . ......+...-.++++|+++.++.
T Consensus 428 ~~~~~~~~~ri~~il~~~~e~~~----~-~~~~~~~~~~~~I~~~~vsf~Y~~--------------------------- 475 (694)
T TIGR03375 428 YQQAKTALQSLDELMQLPVERPE----G-TRFLHRPRLQGEIEFRNVSFAYPG--------------------------- 475 (694)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCC----C-CCCCCCCCccceEEEEEEEEEeCC---------------------------
Confidence 45677788888888877655210 0 000001111236889998876421
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
..+++|+|+|++|+|||.++|+||||||||||+|+|+|+++|+ +|+|.+||+++++... ++.++||+|+
T Consensus 476 -----~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~ 547 (694)
T TIGR03375 476 -----QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQD 547 (694)
T ss_pred -----CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCC
Confidence 1245999999999999999999999999999999999999997 9999999999877543 5789999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+++ .|++|||.++. |+.+.+++.+++...+.+. . .-.|++..||
T Consensus 548 ~~lf~-~TI~eNi~~~~-------------------------~~~~~~~i~~a~~~~~l~~------~--i~~lp~gl~T 593 (694)
T TIGR03375 548 PRLFY-GTLRDNIALGA-------------------------PYADDEEILRAAELAGVTE------F--VRRHPDGLDM 593 (694)
T ss_pred hhhhh-hhHHHHHhCCC-------------------------CCCCHHHHHHHHHHcChHH------H--HHhCcccccc
Confidence 87776 49999998752 2223344444444433221 2 2256788899
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+|+. ...||||||||++|||||+++|++|+||||||+||+.++.+|.+.|+++.+ ++|+|++.|++ ++.+.||+
T Consensus 594 ~i~e~-G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl--~~~~~~D~ 668 (694)
T TIGR03375 594 QIGER-GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRT--SLLDLVDR 668 (694)
T ss_pred eecCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCE
Confidence 99964 566999999999999999999999999999999999999999999999864 78999988876 46789999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|+++++|+++++++
T Consensus 669 iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 669 IIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred EEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=376.75 Aligned_cols=209 Identities=23% Similarity=0.369 Sum_probs=173.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+++ .
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~ 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-c
Confidence 46999999999999999999999999999999999999997 9999999999876543 477999999988776 5
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
|++|||.++.. ++.+.+++.+++...+. ++.+ -.|++..||.+|+. .
T Consensus 432 Ti~~Ni~~~~~------------------------~~~~~~~i~~al~~~~l------~~~i--~~lp~Gldt~ig~~-g 478 (582)
T PRK11176 432 TIANNIAYART------------------------EQYSREQIEEAARMAYA------MDFI--NKMDNGLDTVIGEN-G 478 (582)
T ss_pred hHHHHHhcCCC------------------------CCCCHHHHHHHHHHhCc------HHHH--HhcccccCceeCCC-C
Confidence 99999987520 01122333333333222 1122 24677889999975 5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
+.||||||||++|||+|+++|++|+||||||+||+.++..+.+.|+++.+ ++|+|++.|++ +..+.||+|++|++|
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~--~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRL--STIEKADEILVVEDG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECC
Confidence 67999999999999999999999999999999999999999999999853 68999988876 567889999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
++++.|+++++.+
T Consensus 555 ~i~e~g~~~~l~~ 567 (582)
T PRK11176 555 EIVERGTHAELLA 567 (582)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999998863
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=344.49 Aligned_cols=217 Identities=25% Similarity=0.370 Sum_probs=179.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCC-CCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD-LHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d-~~~~~ 259 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 45999999999999999999999999999999999999987 9999999998864322 35799999996 36677
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||.||+.+.....+.. .. + ....++++++.+||.+..++.++
T Consensus 97 ~tv~enl~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~gL~~~~~~~~~--- 139 (279)
T PRK13635 97 ATVQDDVAFGLENIGVP----------RE----------E--------------MVERVDQALRQVGMEDFLNREPH--- 139 (279)
T ss_pred ccHHHHHhhhHhhCCCC----------HH----------H--------------HHHHHHHHHHHcCChhhhhCCcc---
Confidence 89999998864332210 00 0 01235678899999988887776
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|+++|++. ++. .||++++|++
T Consensus 140 --~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~ 215 (279)
T PRK13635 140 --RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNK 215 (279)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEEC
Confidence 499999999999999999999999999999999999999999999998755889999887765 454 5999999999
Q ss_pred CeEEEecChhhHHH---HHHHcCCCCCC
Q 003389 420 GQIVYQGPRDNVLE---FFEHMGFKCPE 444 (824)
Q Consensus 420 G~iv~~G~~~~~~~---~f~~~G~~~p~ 444 (824)
|++++.|+.+++.. .+...|+.+|.
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 243 (279)
T PRK13635 216 GEILEEGTPEEIFKSGHMLQEIGLDVPF 243 (279)
T ss_pred CEEEEECCHHHHhcCHHHHHHcCCCCCh
Confidence 99999999887653 44555665543
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=333.72 Aligned_cols=198 Identities=32% Similarity=0.462 Sum_probs=167.6
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--CCCceEEEEecCCCCCCCCCH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~i~yv~Q~d~~~~~lTV 262 (824)
++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 6999999999999999999999999999999999999887 99999999987532 124679999999988999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.+....++.. .. +....++++++.+||++..++.++ .
T Consensus 96 ~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~ 136 (218)
T cd03266 96 RENLEYFAGLYGLK----------GD------------------------ELTARLEELADRLGMEELLDRRVG-----G 136 (218)
T ss_pred HHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCHHHHhhhhh-----h
Confidence 99998764332210 00 001235668899999887777765 4
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIM-QEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999975 478988887665 477889999999999999
Q ss_pred EEec
Q 003389 423 VYQG 426 (824)
Q Consensus 423 v~~G 426 (824)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=386.22 Aligned_cols=261 Identities=21% Similarity=0.271 Sum_probs=198.8
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCC-CCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGI-EIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLH 175 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~-~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 175 (824)
.++....++|+.++++.++|............... +.....++++|+++.++.
T Consensus 436 ~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~-------------------------- 489 (710)
T TIGR03796 436 LQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSP-------------------------- 489 (710)
T ss_pred HHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCC--------------------------
Confidence 45567778888888877655211000000000000 111236888888876421
Q ss_pred cccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEec
Q 003389 176 LVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQ 252 (824)
Q Consensus 176 ~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q 252 (824)
..+++|+|+|++|+|||.++|+||||||||||+|+|+|+++|+ +|+|.+||.++.+... ++.++||+|
T Consensus 490 ------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q 560 (710)
T TIGR03796 490 ------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQ 560 (710)
T ss_pred ------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEec
Confidence 1246999999999999999999999999999999999999997 9999999999876543 578999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccc
Q 003389 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d 332 (824)
++.++. .|++|||.++. |+.+.+++.+++...+.+. . .-.++...|
T Consensus 561 ~~~lf~-gTi~eNi~l~~-------------------------~~~~~~~i~~al~~~~l~~------~--i~~lp~gl~ 606 (710)
T TIGR03796 561 DIFLFE-GTVRDNLTLWD-------------------------PTIPDADLVRACKDAAIHD------V--ITSRPGGYD 606 (710)
T ss_pred CChhhh-ccHHHHhhCCC-------------------------CCCCHHHHHHHHHHhCCHH------H--HHhCcCccc
Confidence 987775 59999998741 2222334444444333221 1 224677889
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
|.+|+. ...||||||||++|||||+++|++|+||||||+||+.++.+|.+.|++ .++|+|++.|++ ++...||
T Consensus 607 t~i~e~-G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl--~~i~~~D 679 (710)
T TIGR03796 607 AELAEG-GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRL--STIRDCD 679 (710)
T ss_pred ceeccC-CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCH--HHHHhCC
Confidence 999964 567999999999999999999999999999999999999999999986 378999988876 4667899
Q ss_pred eEEEEcCCeEEEecChhhHHH
Q 003389 413 DIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~~ 433 (824)
+|++|++|++++.|+++++.+
T Consensus 680 ~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 680 EIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred EEEEEeCCEEEEecCHHHHHH
Confidence 999999999999999999864
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=333.09 Aligned_cols=203 Identities=35% Similarity=0.534 Sum_probs=169.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC---CCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG---KDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~---~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|.++ |+ +|+|.++|+++.....++.++|++|++.+++.+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGL 96 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcCC
Confidence 579999999999999999999999999999999999998 65 999999999875433457799999999999999
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHH-HHHHcCCCccccccccCcc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY-VLKILGLDICADTMVGDEM 339 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-iL~~lgL~~~~dt~vg~~~ 339 (824)
||+||+.|+......... . .+. .....+. .++.+++++..++.++
T Consensus 97 tv~enl~~~~~~~~~~~~-----------------~-~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~--- 142 (226)
T cd03234 97 TVRETLTYTAILRLPRKS-----------------S-DAI-------------RKKRVEDVLLRDLALTRIGGNLVK--- 142 (226)
T ss_pred cHHHHHHHHHHhhccccc-----------------c-hHH-------------HHHHHHHHHHHhhcchhhhccccc---
Confidence 999999987543211000 0 000 0011233 7888888877666654
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|+++|++..++.++||++++|++
T Consensus 143 --~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~ 219 (226)
T cd03234 143 --GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSS 219 (226)
T ss_pred --CcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeC
Confidence 5999999999999999999999999999999999999999999999876 4789999888876688999999999999
Q ss_pred CeEEEec
Q 003389 420 GQIVYQG 426 (824)
Q Consensus 420 G~iv~~G 426 (824)
|++++.|
T Consensus 220 G~i~~~g 226 (226)
T cd03234 220 GEIVYSG 226 (226)
T ss_pred CEEEecC
Confidence 9999875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-39 Score=384.05 Aligned_cols=258 Identities=24% Similarity=0.400 Sum_probs=213.4
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCC--cEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIP--KIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLL 174 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p--~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 174 (824)
....+....++..++|..|. +... +..+...| +.+|.|+|+++.+.
T Consensus 951 ~~ka~~Aa~~iF~i~dr~~~-----i~~~-~~~~~~~~~~~G~I~~~~V~F~YP-------------------------- 998 (1228)
T KOG0055|consen 951 ISKAKIAAGSIFEILDRKPT-----IDPD-STSGGKLPNVKGDIEFRNVSFAYP-------------------------- 998 (1228)
T ss_pred HHHHHHHHHHHHHHhcCCCC-----CCCC-CCCCCccccceeEEEEeeeEeeCC--------------------------
Confidence 34466677777887777664 2111 12333333 34699999988642
Q ss_pred ccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEe
Q 003389 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYIS 251 (824)
Q Consensus 175 ~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~ 251 (824)
+ +...+||+|+|++|++|+.+||+|||||||||...+|-.+++|. +|+|.+||++++.... ++++|.|.
T Consensus 999 ----s-RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVs 1070 (1228)
T KOG0055|consen 999 ----T-RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVS 1070 (1228)
T ss_pred ----C-CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceec
Confidence 1 23467999999999999999999999999999999999999997 9999999999988765 58899999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc
Q 003389 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (824)
Q Consensus 252 Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (824)
|+|.+|.. |++|||.|+.. +...+++++|+..++.+.. +.+|++.+
T Consensus 1071 QEP~LF~~-TIrENI~YG~~-------------------------~vs~~eIi~Aak~ANaH~F--------I~sLP~Gy 1116 (1228)
T KOG0055|consen 1071 QEPVLFNG-TIRENIAYGSE-------------------------EVSEEEIIEAAKLANAHNF--------ISSLPQGY 1116 (1228)
T ss_pred cCchhhcc-cHHHHHhccCC-------------------------CCCHHHHHHHHHHhhhHHH--------HhcCcCcc
Confidence 99999876 99999999721 1234567777777776664 56899999
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf 411 (824)
||.||++. ..||||||||++|||||++||+||||||.||+||++++.-+.+.|.+... |+|+|++-|.. .+.+.|
T Consensus 1117 DT~vGerG-~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~--gRT~IvIAHRL--STIqna 1191 (1228)
T KOG0055|consen 1117 DTRVGERG-VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME--GRTTIVIAHRL--STIQNA 1191 (1228)
T ss_pred cCccCccc-CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc--CCcEEEEecch--hhhhcC
Confidence 99999754 45999999999999999999999999999999999999999999999874 78888876755 588999
Q ss_pred CeEEEEcCCeEEEecChhhHHH
Q 003389 412 DDIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 412 D~iilL~~G~iv~~G~~~~~~~ 433 (824)
|.|.|+++|+|+++|++++++.
T Consensus 1192 D~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1192 DVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred CEEEEEECCEEEecccHHHHHh
Confidence 9999999999999999999975
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=332.05 Aligned_cols=194 Identities=28% Similarity=0.389 Sum_probs=163.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d~~~ 257 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 46999999999999999999999999999999999999886 999999999876432 235799999999889
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||+||+.+.....+... . + ....++++++.+||++..++.+.
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~- 136 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKKE----------R----------E--------------IQRRVGAALRQVGLEHKADAFPE- 136 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHcCChhhhhCChh-
Confidence 89999999988643322100 0 0 01134668889999877777665
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .++|+|++.|++ .++.++||++++|
T Consensus 137 ----~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l 210 (214)
T TIGR02673 137 ----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDL-SLVDRVAHRVIIL 210 (214)
T ss_pred ----hCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhcCEEEEe
Confidence 4999999999999999999999999999999999999999999999875 478888887665 4788899999999
Q ss_pred cCCe
Q 003389 418 SEGQ 421 (824)
Q Consensus 418 ~~G~ 421 (824)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=331.88 Aligned_cols=195 Identities=25% Similarity=0.362 Sum_probs=164.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d~~~ 257 (824)
+++|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 46999999999999999999999999999999999999887 999999999875432 235699999999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||+||+.+.....+... . +....++++++.+||++..++.++
T Consensus 91 ~~~t~~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 135 (214)
T cd03292 91 PDRNVYENVAFALEVTGVPP----------R------------------------EIRKRVPAALELVGLSHKHRALPA- 135 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCHHHhhCChh-
Confidence 99999999988653322100 0 001134568889999887777665
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.|++ .++.++||++++|
T Consensus 136 ----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~-~~~~~~~d~i~~l 209 (214)
T cd03292 136 ----ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAK-ELVDTTRHRVIAL 209 (214)
T ss_pred ----hcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 5999999999999999999999999999999999999999999999875 478888887665 4677889999999
Q ss_pred cCCeE
Q 003389 418 SEGQI 422 (824)
Q Consensus 418 ~~G~i 422 (824)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=348.61 Aligned_cols=217 Identities=23% Similarity=0.350 Sum_probs=174.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC-----------------------
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----------------------- 240 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~----------------------- 240 (824)
..+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|+++|++...
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35999999999999999999999999999999999999987 9999999876421
Q ss_pred ----CCCCceEEEEecCC-CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchh
Q 003389 241 ----FVPQRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETS 315 (824)
Q Consensus 241 ----~~~~~~i~yv~Q~d-~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~ 315 (824)
...++.+|||+|++ ..+...||+||+.|+....+... . + ..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~----------~----------~--------------~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK----------E----------E--------------AK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCH----------H----------H--------------HH
Confidence 01135799999985 34456799999998754332210 0 0 01
Q ss_pred hhHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 003389 316 LVTDYVLKILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394 (824)
Q Consensus 316 ~~~~~iL~~lgL~-~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~ 394 (824)
..+.++++.+||+ +..++.+. .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|.
T Consensus 143 ~~~~~~l~~~gL~~~~~~~~~~-----~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~ 216 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQRSPF-----ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGK 216 (305)
T ss_pred HHHHHHHHHcCCChhhhhCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCC
Confidence 2356788999996 56676655 5999999999999999999999999999999999999999999999975 488
Q ss_pred EEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhHH---HHHHHcCCCCCC
Q 003389 395 TMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL---EFFEHMGFKCPE 444 (824)
Q Consensus 395 tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~---~~f~~~G~~~p~ 444 (824)
|+|++.|+ .+++.++||+|++|++|++++.|+++++. +.....|...|.
T Consensus 217 tiiivtHd-~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 268 (305)
T PRK13651 217 TIILVTHD-LDNVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNMEPPK 268 (305)
T ss_pred EEEEEeeC-HHHHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCCh
Confidence 98887655 55788999999999999999999998875 234445555454
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=359.53 Aligned_cols=210 Identities=24% Similarity=0.396 Sum_probs=176.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~ 259 (824)
++++|+|+||.|++||+++|+||||||||||||+|+|+++|. +|+|.++|+++..... ++.++||+|+..+++.
T Consensus 15 ~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~ 91 (402)
T PRK09536 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFE 91 (402)
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCC
Confidence 356999999999999999999999999999999999999987 9999999998765332 4679999999998899
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.++...+... . . ... .+....++++++.+||.+..++.+.
T Consensus 92 ~tv~e~v~~~~~~~~~~--~------~--------~~~--------------~~~~~~v~~~le~vgl~~~~~~~~~--- 138 (402)
T PRK09536 92 FDVRQVVEMGRTPHRSR--F------D--------TWT--------------ETDRAAVERAMERTGVAQFADRPVT--- 138 (402)
T ss_pred CCHHHHHHhccchhccc--c------c--------CCC--------------HHHHHHHHHHHHHcCCchhhcCChh---
Confidence 99999998864211000 0 0 000 0011246778999999988887765
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||.|||+|+.+|++|||||||+|||+.++.++++.|+++++ .+.|+|+++|+ .+++.++||++++|++
T Consensus 139 --~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHd-l~~~~~~adrii~l~~ 214 (402)
T PRK09536 139 --SLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHD-LDLAARYCDELVLLAD 214 (402)
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECC-HHHHHHhCCEEEEEEC
Confidence 4999999999999999999999999999999999999999999999986 57888887655 5688899999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|++++.|+++++.
T Consensus 215 G~iv~~G~~~ev~ 227 (402)
T PRK09536 215 GRVRAAGPPADVL 227 (402)
T ss_pred CEEEEecCHHHHh
Confidence 9999999998753
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=342.41 Aligned_cols=206 Identities=25% Similarity=0.366 Sum_probs=172.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCC-CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~-~~~~ 259 (824)
+.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++. .+..
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFS 93 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCccccccc
Confidence 45999999999999999999999999999999999999987 999999999875422 1356899999863 3446
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||.||+.+.....+.. .. .....++++++.+||.+..++.+.
T Consensus 94 ~tv~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~--- 136 (277)
T PRK13652 94 PTVEQDIAFGPINLGLD----------EE------------------------TVAHRVSSALHMLGLEELRDRVPH--- 136 (277)
T ss_pred ccHHHHHHhHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCChhHhcCCcc---
Confidence 89999998764322110 00 001135678899999888887765
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ +++.+.||++++|++
T Consensus 137 --~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~ 213 (277)
T PRK13652 137 --HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDK 213 (277)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEEC
Confidence 49999999999999999999999999999999999999999999999875578888887664 477889999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|++++.|+++++.
T Consensus 214 G~i~~~g~~~~~~ 226 (277)
T PRK13652 214 GRIVAYGTVEEIF 226 (277)
T ss_pred CeEEEECCHHHHh
Confidence 9999999998875
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=338.43 Aligned_cols=204 Identities=23% Similarity=0.315 Sum_probs=170.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-----------CCCceEEEEec
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----------VPQRTCAYISQ 252 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-----------~~~~~i~yv~Q 252 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.++|++|
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q 92 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQ 92 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEec
Confidence 46999999999999999999999999999999999999886 99999999887532 12357999999
Q ss_pred CCCCCCCCCHHHHHHHhhhh-cCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc
Q 003389 253 HDLHHGEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~a~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (824)
++.+++.+||+||+.++... ++.. .. +....+..+++.+||++..
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~ 138 (250)
T PRK11264 93 NFNLFPHRTVLENIIEGPVIVKGEP----------KE------------------------EATARARELLAKVGLAGKE 138 (250)
T ss_pred CcccCCCCCHHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCcchh
Confidence 99889999999999875321 1100 00 0011345678899998777
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf 411 (824)
|+.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++|
T Consensus 139 ~~~~~-----~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~-~~~~~~~ 211 (250)
T PRK11264 139 TSYPR-----RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEM-SFARDVA 211 (250)
T ss_pred hCChh-----hCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhc
Confidence 76655 5999999999999999999999999999999999999999999999976 478888876654 5788899
Q ss_pred CeEEEEcCCeEEEecChhhH
Q 003389 412 DDIILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 412 D~iilL~~G~iv~~G~~~~~ 431 (824)
|++++|++|++++.|+.+++
T Consensus 212 d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 212 DRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred CEEEEEECCEEEEeCCHHHH
Confidence 99999999999999998776
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=351.04 Aligned_cols=208 Identities=21% Similarity=0.278 Sum_probs=173.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCC--C
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD--L 255 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d--~ 255 (824)
..+|+|||++|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.... .++.++||+|++ .
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 56999999999999999999999999999999999999886 999999999886542 135799999997 5
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~ 334 (824)
++|.+||.||+.+..+....+ +.+.+ ....+.++++.+||. ...++.
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~--------~~~~~------------------------~~~~~~~~l~~vgl~~~~~~~~ 158 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPK--------LSRQE------------------------VKDRVKAMMLKVGLLPNLINRY 158 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccC--------CCHHH------------------------HHHHHHHHHHHcCCChHHhcCC
Confidence 788999999998865432100 00000 012345688999994 455655
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
+ +.|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+..+.|+|+++| +...+.++||+|
T Consensus 159 p-----~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTH-dl~~~~~~~dri 232 (331)
T PRK15079 159 P-----HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAH-DLAVVKHISDRV 232 (331)
T ss_pred c-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC-CHHHHHHhCCEE
Confidence 5 4599999999999999999999999999999999999999999999998766888888765 455788899999
Q ss_pred EEEcCCeEEEecChhhHH
Q 003389 415 ILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (824)
++|++|++++.|+.+++.
T Consensus 233 ~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 233 LVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999998774
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=336.24 Aligned_cols=205 Identities=20% Similarity=0.328 Sum_probs=172.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-----CCceEEEEecCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-----PQRTCAYISQHDLHHG 258 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-----~~~~i~yv~Q~d~~~~ 258 (824)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 46999999999999999999999999999999999999887 999999999875421 1357999999998899
Q ss_pred CCCHHHHHHHhhh-hcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 259 EMTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 259 ~lTV~E~L~f~a~-~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
.+||+||+.+... ..+.. .. + ....+.++++.+||++..+..+.
T Consensus 91 ~~tv~~~l~~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~gl~~~~~~~~~- 135 (240)
T PRK09493 91 HLTALENVMFGPLRVRGAS----------KE----------E--------------AEKQARELLAKVGLAERAHHYPS- 135 (240)
T ss_pred CCcHHHHHHhHHHHhcCCC----------HH----------H--------------HHHHHHHHHHHcCChHHHhcChh-
Confidence 9999999987532 11110 00 0 01134668889999877776665
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+||++|+.+|++++|||||+|||..++..+.+.|+++++ .++|+|+++|++ +++.++||++++|
T Consensus 136 ----~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l 209 (240)
T PRK09493 136 ----ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEI-GFAEKVASRLIFI 209 (240)
T ss_pred ----hcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 5999999999999999999999999999999999999999999999875 478888887665 4677899999999
Q ss_pred cCCeEEEecChhhHH
Q 003389 418 SEGQIVYQGPRDNVL 432 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (824)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 210 DKGRIAEDGDPQVLI 224 (240)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999988763
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=331.92 Aligned_cols=201 Identities=27% Similarity=0.345 Sum_probs=164.3
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCC--CC
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD--LH 256 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d--~~ 256 (824)
++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 6999999999999999999999999999999999999887 999999999876432 235799999997 46
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMV 335 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~v 335 (824)
++.+||+||+.+.....+... .+ +. .....+++++.++|. ...+..+
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~----------~~-----------~~-----------~~~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLS----------KK-----------EA-----------RKEAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCc----------HH-----------HH-----------HHHHHHHHHHHCCCChhHhhCCc
Confidence 678999999988643321100 00 00 001124577888985 5566665
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
+ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|+++|++ .++.++||+++
T Consensus 144 ~-----~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~ 217 (228)
T cd03257 144 H-----ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVA 217 (228)
T ss_pred h-----hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEE
Confidence 5 49999999999999999999999999999999999999999999999865478988887765 46777999999
Q ss_pred EEcCCeEEEec
Q 003389 416 LLSEGQIVYQG 426 (824)
Q Consensus 416 lL~~G~iv~~G 426 (824)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=355.18 Aligned_cols=209 Identities=22% Similarity=0.300 Sum_probs=177.8
Q ss_pred ccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCc----ccCCCCC-------CceEEE
Q 003389 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH----ELNEFVP-------QRTCAY 249 (824)
Q Consensus 181 ~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~----~~~~~~~-------~~~i~y 249 (824)
.+...+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+ ++..... ++.++|
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~ 110 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSM 110 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEE
Confidence 34567999999999999999999999999999999999999987 999999996 3332211 257999
Q ss_pred EecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc
Q 003389 250 ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (824)
Q Consensus 250 v~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (824)
|+|+..+++.+||+||+.|+...++... .+ ....++++++.+||++
T Consensus 111 vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------~~------------------------~~~~a~e~le~vgL~~ 156 (382)
T TIGR03415 111 VFQKFALMPWLTVEENVAFGLEMQGMPE----------AE------------------------RRKRVDEQLELVGLAQ 156 (382)
T ss_pred EECCCcCCCCCcHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCch
Confidence 9999999999999999999764433210 00 0123567899999998
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh
Q 003389 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (824)
Q Consensus 330 ~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~ 409 (824)
..|+.+++ |||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|+++.+..++|+|+++|+ ..++.+
T Consensus 157 ~~~~~~~~-----LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHd-l~e~~~ 230 (382)
T TIGR03415 157 WADKKPGE-----LSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHD-LDEALK 230 (382)
T ss_pred hhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHH
Confidence 88877764 999999999999999999999999999999999999999999999987668899988765 557889
Q ss_pred hcCeEEEEcCCeEEEecChhhHH
Q 003389 410 LFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 410 lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
+||+|++|++|+++..|+++++.
T Consensus 231 l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 231 IGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred hCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999998874
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=382.87 Aligned_cols=257 Identities=25% Similarity=0.332 Sum_probs=199.1
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.++.+..++|+.++++.++|.... ......+...-.++++|+++.++
T Consensus 438 ~~~~~~~~~ri~~~l~~~~e~~~~-----~~~~~~~~~~~~I~~~~vsf~y~---------------------------- 484 (708)
T TIGR01193 438 LQAARVANNRLNEVYLVDSEFINK-----KKRTELNNLNGDIVINDVSYSYG---------------------------- 484 (708)
T ss_pred HHHHHHHHHHHHHHHcCCCccccc-----ccccCCCCCCCcEEEEEEEEEcC----------------------------
Confidence 355667788888887766552100 00011111223688888887531
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
.++++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|++||.++.+... ++.++||+|+
T Consensus 485 -----~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 556 (708)
T TIGR01193 485 -----YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQE 556 (708)
T ss_pred -----CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecC
Confidence 1246999999999999999999999999999999999999997 9999999999876543 5789999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+++. ||+|||.++.. |+.+.+++.+++...+.++ . +..++...||
T Consensus 557 ~~lf~g-TI~eNi~l~~~------------------------~~~~~~~i~~a~~~a~l~~------~--i~~lp~gldt 603 (708)
T TIGR01193 557 PYIFSG-SILENLLLGAK------------------------ENVSQDEIWAACEIAEIKD------D--IENMPLGYQT 603 (708)
T ss_pred ceehhH-HHHHHHhccCC------------------------CCCCHHHHHHHHHHhCCHH------H--HHhcccccCc
Confidence 887765 99999988521 1222233444444333222 2 2256778899
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+|+ ....||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++ .++|+|++.|++ ++.+.||+
T Consensus 604 ~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~--~~~~~~D~ 677 (708)
T TIGR01193 604 ELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRL--SVAKQSDK 677 (708)
T ss_pred EecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecch--HHHHcCCE
Confidence 9986 45679999999999999999999999999999999999999999999985 368998888876 46788999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|++++.|+++++.+
T Consensus 678 i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 678 IIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=341.20 Aligned_cols=204 Identities=25% Similarity=0.357 Sum_probs=170.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC----CCceEEEEecCCC-CCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDL-HHG 258 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~----~~~~i~yv~Q~d~-~~~ 258 (824)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFV 91 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhcc
Confidence 45999999999999999999999999999999999999886 999999999875432 1356999999865 466
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCc
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (824)
.+||.||+.|.....+.. +.+ ....++++++.+||.+..++.++
T Consensus 92 ~~tv~enl~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~-- 135 (274)
T PRK13644 92 GRTVEEDLAFGPENLCLP----------PIE------------------------IRKRVDRALAEIGLEKYRHRSPK-- 135 (274)
T ss_pred cchHHHHHHhhHHHcCCC----------HHH------------------------HHHHHHHHHHHCCCHHHhcCCcc--
Confidence 789999998865332210 000 01135668899999888887765
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|+++|++. ++ ..||++++|+
T Consensus 136 ---~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~-~~-~~~d~v~~l~ 209 (274)
T PRK13644 136 ---TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLE-EL-HDADRIIVMD 209 (274)
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HH-hhCCEEEEEE
Confidence 4999999999999999999999999999999999999999999999975 4889999877654 55 5699999999
Q ss_pred CCeEEEecChhhHH
Q 003389 419 EGQIVYQGPRDNVL 432 (824)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (824)
+|++++.|+.+++.
T Consensus 210 ~G~i~~~g~~~~~~ 223 (274)
T PRK13644 210 RGKIVLEGEPENVL 223 (274)
T ss_pred CCEEEEECCHHHHh
Confidence 99999999988764
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=343.47 Aligned_cols=205 Identities=20% Similarity=0.296 Sum_probs=170.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-------CCceEEEEecCC--
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHD-- 254 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~i~yv~Q~d-- 254 (824)
+++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 45999999999999999999999999999999999999987 999999999875321 245799999985
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt 333 (824)
.+++ .||.||+.|+....+.. .. + ....++++++.+||. +..++
T Consensus 97 ~l~~-~tv~e~i~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~gL~~~~~~~ 141 (286)
T PRK13646 97 QLFE-DTVEREIIFGPKNFKMN----------LD----------E--------------VKNYAHRLLMDLGFSRDVMSQ 141 (286)
T ss_pred ccch-hhHHHHHHhhHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCCChhhhhC
Confidence 3444 59999999864322110 00 0 011356688999996 56666
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+. .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..|.|+|+++|+. +++.++||+
T Consensus 142 ~~~-----~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dr 215 (286)
T PRK13646 142 SPF-----QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADE 215 (286)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCE
Confidence 654 59999999999999999999999999999999999999999999999765688998887654 467889999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 003389 414 IILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (824)
|++|++|++++.|+++++.
T Consensus 216 i~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 216 VIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988764
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=331.71 Aligned_cols=196 Identities=21% Similarity=0.342 Sum_probs=163.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-------CceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d~~ 256 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|+++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 46999999999999999999999999999999999999887 9999999998754321 2569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++.+||+||+.+........ ..+ ....+.++++.+||++..++.++
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~ 140 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKS----------VKE------------------------AKERAYEMLEKVGLEHRINHRPS 140 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCChhhhhCChh
Confidence 88999999998864322110 000 01124568889999877776665
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|+++|++. ++ +.+|++++
T Consensus 141 -----~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~ 213 (221)
T TIGR02211 141 -----ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLE 213 (221)
T ss_pred -----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEE
Confidence 599999999999999999999999999999999999999999999998655789999887764 45 45899999
Q ss_pred EcCCeEE
Q 003389 417 LSEGQIV 423 (824)
Q Consensus 417 L~~G~iv 423 (824)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=338.63 Aligned_cols=201 Identities=24% Similarity=0.326 Sum_probs=169.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++... .+.++|++|++.+++.+||+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHH
Confidence 46999999999999999999999999999999999999887 99999999987542 34589999999889999999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+.+.....+.. ..+ ....+.++++.+||++..++.++ .|
T Consensus 89 e~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~-----~L 129 (255)
T PRK11248 89 DNVAFGLQLAGVE----------KMQ------------------------RLEIAHQMLKKVGLEGAEKRYIW-----QL 129 (255)
T ss_pred HHHHhHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCChhHhhCChh-----hC
Confidence 9998764322110 000 01134668899999877776665 49
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc--CCe
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS--EGQ 421 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~--~G~ 421 (824)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..++|+|+++|++ .++.++||++++|+ +|+
T Consensus 130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~ 208 (255)
T PRK11248 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGR 208 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcE
Confidence 999999999999999999999999999999999999999999998654578888877654 47888999999998 599
Q ss_pred EEEecChh
Q 003389 422 IVYQGPRD 429 (824)
Q Consensus 422 iv~~G~~~ 429 (824)
++..++.+
T Consensus 209 i~~~~~~~ 216 (255)
T PRK11248 209 VVERLPLN 216 (255)
T ss_pred EEEEecCC
Confidence 99988754
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=332.59 Aligned_cols=202 Identities=25% Similarity=0.357 Sum_probs=168.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|+++|. +|+|.++|.++..... ++.++|++|+..+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 46999999999999999999999999999999999999987 9999999988754322 3569999999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcC-CCccccccccCc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG-LDICADTMVGDE 338 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg-L~~~~dt~vg~~ 338 (824)
+||+||+.++....+.. . ....+.+++.++ +.+..++.++
T Consensus 90 ~tv~~~l~~~~~~~~~~----------~---------------------------~~~~~~~l~~~~~l~~~~~~~~~-- 130 (230)
T TIGR03410 90 LTVEENLLTGLAALPRR----------S---------------------------RKIPDEIYELFPVLKEMLGRRGG-- 130 (230)
T ss_pred CcHHHHHHHHHHhcCcc----------h---------------------------HHHHHHHHHHHHhHHHHhhCChh--
Confidence 99999998864322110 0 001234556665 4555565554
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..++|+|+++|++ +++.++||++++|+
T Consensus 131 ---~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~ 206 (230)
T TIGR03410 131 ---DLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVME 206 (230)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 59999999999999999999999999999999999999999999999864578888887664 47888999999999
Q ss_pred CCeEEEecChhhH
Q 003389 419 EGQIVYQGPRDNV 431 (824)
Q Consensus 419 ~G~iv~~G~~~~~ 431 (824)
+|++++.|+.+++
T Consensus 207 ~g~i~~~~~~~~~ 219 (230)
T TIGR03410 207 RGRVVASGAGDEL 219 (230)
T ss_pred CCEEEEECCHHHc
Confidence 9999999998776
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=354.89 Aligned_cols=208 Identities=26% Similarity=0.415 Sum_probs=175.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
.++|+|+|+++++||.+||+|+||||||||+++|+|-++|+ +|+|++||.++..... ++.+++++|. .|+..-
T Consensus 351 ~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr-~hlF~~ 426 (573)
T COG4987 351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQR-VHLFSG 426 (573)
T ss_pred cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccc-hHHHHH
Confidence 46999999999999999999999999999999999999998 9999999999877655 4678999996 455556
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
|+|+||.++ +|+.+.++.+++....+.++ . ..+.++..||.+|+ .+
T Consensus 427 Tlr~NL~lA-------------------------~~~AsDEel~~aL~qvgL~~------l--~~~~p~gl~t~lge-~G 472 (573)
T COG4987 427 TLRDNLRLA-------------------------NPDASDEELWAALQQVGLEK------L--LESAPDGLNTWLGE-GG 472 (573)
T ss_pred HHHHHHhhc-------------------------CCCCCHHHHHHHHHHcCHHH------H--HHhChhhhhchhcc-CC
Confidence 999999876 35555555555544433222 1 22445677889985 56
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
+.||||||||++|||+|++++++++|||||.|||+.|+.++++.|.+.++ ++|+++++|+-. -.+.||+|++|++|
T Consensus 473 ~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~--~le~~drIivl~~G 548 (573)
T COG4987 473 RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLR--GLERMDRIIVLDNG 548 (573)
T ss_pred CcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccc--cHhhcCEEEEEECC
Confidence 77999999999999999999999999999999999999999999998775 899999988765 34679999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
+++++|.++++.+
T Consensus 549 kiie~G~~~~Ll~ 561 (573)
T COG4987 549 KIIEEGTHAELLA 561 (573)
T ss_pred eeeecCCHHhhhc
Confidence 9999999998874
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=370.65 Aligned_cols=207 Identities=26% Similarity=0.445 Sum_probs=171.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|++||+++.+... ++.++||+|++.+++ .
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 428 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-A 428 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhc-c
Confidence 35999999999999999999999999999999999999997 9999999999876543 467999999987776 5
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
|++||+.++. |+.+.+++.+++...+.++ . .-. ++..||.+|+. .
T Consensus 429 ti~~Ni~~~~-------------------------~~~~~~~i~~al~~~~l~~------~--i~~-p~GldT~vge~-g 473 (574)
T PRK11160 429 TLRDNLLLAA-------------------------PNASDEALIEVLQQVGLEK------L--LED-DKGLNAWLGEG-G 473 (574)
T ss_pred cHHHHhhcCC-------------------------CccCHHHHHHHHHHcCCHH------H--HcC-ccccCchhcCC-C
Confidence 9999998852 1111222333332222111 1 123 67789999964 5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
+.||||||||++|||+|+++|++|+|||||++||+.++..|.+.|+++.+ ++|+|++.|++. +...||+|++|++|
T Consensus 474 ~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~--~~tviiitHr~~--~~~~~d~i~~l~~G 549 (574)
T PRK11160 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLMITHRLT--GLEQFDRICVMDNG 549 (574)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecChh--HHHhCCEEEEEeCC
Confidence 66999999999999999999999999999999999999999999999863 789999888874 45679999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
++++.|+++++.+
T Consensus 550 ~i~~~g~~~~l~~ 562 (574)
T PRK11160 550 QIIEQGTHQELLA 562 (574)
T ss_pred eEEEeCCHHHHHh
Confidence 9999999998764
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=339.95 Aligned_cols=216 Identities=27% Similarity=0.391 Sum_probs=175.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--C---CCceEEEEecCCC-CC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--V---PQRTCAYISQHDL-HH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~---~~~~i~yv~Q~d~-~~ 257 (824)
+.+|+|||++|++||+++|+||||||||||+++|+|+++|. +|+|.++|+++... . .++.++|++|++. .+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQL 91 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhh
Confidence 45999999999999999999999999999999999999887 99999999987421 1 1357999999863 34
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
..+||.||+.+.....+.. +.+ ....+..+++.+||.+..++.++
T Consensus 92 ~~~tv~e~i~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~L~~~~~~~~~- 136 (275)
T PRK13639 92 FAPTVEEDVAFGPLNLGLS----------KEE------------------------VEKRVKEALKAVGMEGFENKPPH- 136 (275)
T ss_pred ccccHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHCCCchhhcCChh-
Confidence 4579999998753211110 000 01134568899999888887766
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|+ ..++.++||++++|
T Consensus 137 ----~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~~til~vtH~-~~~~~~~~d~i~~l 210 (275)
T PRK13639 137 ----HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIISTHD-VDLVPVYADKVYVM 210 (275)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecC-HHHHHHhCCEEEEE
Confidence 4999999999999999999999999999999999999999999999976 48888888765 44778899999999
Q ss_pred cCCeEEEecChhhHH---HHHHHcCCCCC
Q 003389 418 SEGQIVYQGPRDNVL---EFFEHMGFKCP 443 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~---~~f~~~G~~~p 443 (824)
++|++++.|+++++. ...+..|++.|
T Consensus 211 ~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 239 (275)
T PRK13639 211 SDGKIIKEGTPKEVFSDIETIRKANLRLP 239 (275)
T ss_pred ECCEEEEeCCHHHHhcChHHHHhcCCCCC
Confidence 999999999998874 23444555443
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=336.04 Aligned_cols=205 Identities=26% Similarity=0.329 Sum_probs=171.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCC-CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~-~~~~ 259 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 46999999999999999999999999999999999999987 999999999875432 2467999999963 6777
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.+.....+.. .. +....++++++.+||.+..++.++
T Consensus 99 ~tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~--- 141 (271)
T PRK13632 99 ATVEDDIAFGLENKKVP----------PK------------------------KMKDIIDDLAKKVGMEDYLDKEPQ--- 141 (271)
T ss_pred ccHHHHHHhHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCHHHhhCCcc---
Confidence 89999998864321110 00 001135668899999887787765
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++ ..||++++|++
T Consensus 142 --~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~ 217 (271)
T PRK13632 142 --NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE 217 (271)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC
Confidence 599999999999999999999999999999999999999999999997644589999888765 44 47999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|+++..|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999987764
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=334.45 Aligned_cols=206 Identities=21% Similarity=0.355 Sum_probs=172.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 46999999999999999999999999999999999999887 9999999998754322 3569999999988999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||.||+.+..+..... ... +....++++++.+||++..++.++
T Consensus 93 ~tv~enl~~~~~~~~~~---------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~--- 136 (241)
T PRK10895 93 LSVYDNLMAVLQIRDDL---------SAE------------------------QREDRANELMEEFHIEHLRDSMGQ--- 136 (241)
T ss_pred CcHHHHHhhhhhccccc---------CHH------------------------HHHHHHHHHHHHcCCHHHhhcchh---
Confidence 99999998764321100 000 001234668889999876666654
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||++++|++
T Consensus 137 --~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~-~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 137 --SLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNV-RETLAVCERAYIVSQ 212 (241)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCH-HHHHHhcCEEEEEeC
Confidence 5999999999999999999999999999999999999999999999875 478988887765 478889999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (241)
T PRK10895 213 GHLIAHGTPTEIL 225 (241)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999987763
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=341.04 Aligned_cols=217 Identities=24% Similarity=0.336 Sum_probs=176.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC----CCceEEEEecCCC-CCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDL-HHG 258 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~----~~~~i~yv~Q~d~-~~~ 258 (824)
+.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 46999999999999999999999999999999999999987 999999999875421 2467999999864 233
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCc
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (824)
..||.||+.|.....+.. .. + ....++++++.+||++..++.++
T Consensus 100 ~~~v~~~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~gL~~~~~~~~~-- 143 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIP----------PE----------E--------------IRERVDESLKKVGMYEYRRHAPH-- 143 (280)
T ss_pred cccHHHHHHhhHhhcCCC----------HH----------H--------------HHHHHHHHHHHCCCHhHhhCCcc--
Confidence 469999998875432210 00 0 01135678899999988888776
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.. ||++++|+
T Consensus 144 ---~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~ 218 (280)
T PRK13633 144 ---LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMD 218 (280)
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEE
Confidence 499999999999999999999999999999999999999999999997655889999887765 4544 99999999
Q ss_pred CCeEEEecChhhHHH---HHHHcCCCCCC
Q 003389 419 EGQIVYQGPRDNVLE---FFEHMGFKCPE 444 (824)
Q Consensus 419 ~G~iv~~G~~~~~~~---~f~~~G~~~p~ 444 (824)
+|+++++|+++++.. .+...+++.|.
T Consensus 219 ~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (280)
T PRK13633 219 SGKVVMEGTPKEIFKEVEMMKKIGLDVPQ 247 (280)
T ss_pred CCEEEEecCHHHHhcChHHHHhcCCCCCc
Confidence 999999999988753 23344555443
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=330.69 Aligned_cols=196 Identities=24% Similarity=0.314 Sum_probs=164.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d~~~ 257 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 46999999999999999999999999999999999999887 999999999875432 135799999998888
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||+||+.+.....+... .+ ....++.+++.+||.+..++.++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~--------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~- 136 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAGASG--------------------DD--------------IRRRVSAALDKVGLLDKAKNFPI- 136 (222)
T ss_pred ccccHHHHHHhHHHhcCCCH--------------------HH--------------HHHHHHHHHHHcCChhhhhCCch-
Confidence 89999999988643322100 00 01124567889999877776655
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++...||++++|
T Consensus 137 ----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l 210 (222)
T PRK10908 137 ----QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDI-GLISRRSYRMLTL 210 (222)
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 5999999999999999999999999999999999999999999999976 478888877654 4677889999999
Q ss_pred cCCeEE
Q 003389 418 SEGQIV 423 (824)
Q Consensus 418 ~~G~iv 423 (824)
++|+++
T Consensus 211 ~~G~i~ 216 (222)
T PRK10908 211 SDGHLH 216 (222)
T ss_pred ECCEEc
Confidence 999985
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=386.65 Aligned_cols=219 Identities=24% Similarity=0.328 Sum_probs=184.5
Q ss_pred hhcccccCcc-cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEE
Q 003389 172 GLLHLVPSKK-RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCA 248 (824)
Q Consensus 172 ~~~~~~~~~~-~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~ 248 (824)
++.++.+.+. +++.+|+|+|+.+++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.+|
T Consensus 930 ~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257 930 CVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred EEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchHHHHhhcEE
Confidence 3444444442 2467999999999999999999999999999999999999997 999999999875321 246799
Q ss_pred EEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC
Q 003389 249 YISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD 328 (824)
Q Consensus 249 yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~ 328 (824)
|++|++.+++.+||+|++.|.++.++.... + ....++++|+.+||+
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~--------------------~--------------~~~~v~~lL~~vgL~ 1052 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWE--------------------E--------------AQLEMEAMLEDTGLH 1052 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHH--------------------H--------------HHHHHHHHHHHcCCc
Confidence 999999999999999999998765543100 0 012356789999999
Q ss_pred ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHH
Q 003389 329 ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (824)
Q Consensus 329 ~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~ 408 (824)
+..|+.+++ |||||||||+||+||+++|++|+|||||+|||+.++..+.+.|+++. .|+|+|+++|+ .+++.
T Consensus 1053 ~~~~~~~~~-----LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~--~g~TIIltTHd-mdea~ 1124 (2272)
T TIGR01257 1053 HKRNEEAQD-----LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR--SGRTIIMSTHH-MDEAD 1124 (2272)
T ss_pred hhhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEECC-HHHHH
Confidence 888887764 99999999999999999999999999999999999999999999994 38898888765 55888
Q ss_pred hhcCeEEEEcCCeEEEecChhhHHHHH
Q 003389 409 DLFDDIILLSEGQIVYQGPRDNVLEFF 435 (824)
Q Consensus 409 ~lfD~iilL~~G~iv~~G~~~~~~~~f 435 (824)
.+||||++|++|+++..|+++.+.+-|
T Consensus 1125 ~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1125 LLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 899999999999999999999887655
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=370.98 Aligned_cols=207 Identities=24% Similarity=0.304 Sum_probs=172.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++|+|||.++|+|+||||||||+|+|+|+++|+ +|+|.+||+++++..+ ++.++||+|++.+|+.
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~- 429 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD- 429 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-
Confidence 35999999999999999999999999999999999999997 9999999999876543 5789999999888876
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
|++|||.++.. .+.+++.+++...+. ++.++ .|++..||.+|+ ..
T Consensus 430 Ti~~NI~~~~~--------------------------~~d~~i~~a~~~~gl------~~~i~--~lp~Gldt~i~e-~g 474 (592)
T PRK10790 430 TFLANVTLGRD--------------------------ISEEQVWQALETVQL------AELAR--SLPDGLYTPLGE-QG 474 (592)
T ss_pred hHHHHHHhCCC--------------------------CCHHHHHHHHHHcCc------HHHHH--hccccccccccC-CC
Confidence 99999988621 011222233322221 11222 356778999986 45
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
..||||||||++|||||+.+|++|+||||||+||+.++.+|.+.|+++.+ ++|+|++.|++ +....||+|++|++|
T Consensus 475 ~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~--~~l~~~D~ii~l~~G 550 (592)
T PRK10790 475 NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRL--STIVEADTILVLHRG 550 (592)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999999864 68999988887 567789999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
+++..|+++++.+
T Consensus 551 ~i~~~G~~~~L~~ 563 (592)
T PRK10790 551 QAVEQGTHQQLLA 563 (592)
T ss_pred EEEEEcCHHHHHh
Confidence 9999999998863
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=328.74 Aligned_cols=197 Identities=32% Similarity=0.470 Sum_probs=165.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~lT 261 (824)
+++|+|+|++|++| +++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFT 88 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCC
Confidence 46999999999999 99999999999999999999999987 999999998875422 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.+.....+.. +. + ....++.+++.+||++..++.++
T Consensus 89 v~~~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~----- 129 (211)
T cd03264 89 VREFLDYIAWLKGIP----------SK----------E--------------VKARVDEVLELVNLGDRAKKKIG----- 129 (211)
T ss_pred HHHHHHHHHHHhCCC----------HH----------H--------------HHHHHHHHHHHCCCHHHHhCchh-----
Confidence 999998864332210 00 0 01134668889999887777765
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|+ ..++.+++|++++|++|+
T Consensus 130 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~-~~~~~~~~d~i~~l~~g~ 206 (211)
T cd03264 130 SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHI-VEDVESLCNQVAVLNKGK 206 (211)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCC-HHHHHHhCCEEEEEECCE
Confidence 4999999999999999999999999999999999999999999999975 4787777655 446778999999999999
Q ss_pred EEEec
Q 003389 422 IVYQG 426 (824)
Q Consensus 422 iv~~G 426 (824)
+++.|
T Consensus 207 i~~~g 211 (211)
T cd03264 207 LVFEG 211 (211)
T ss_pred EEecC
Confidence 98765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=337.75 Aligned_cols=216 Identities=22% Similarity=0.299 Sum_probs=176.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCC-CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~-~~~~ 259 (824)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++|. +|+|.++|+++.... .++.++|++|++. +++.
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVG 98 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhccc
Confidence 35899999999999999999999999999999999999987 999999999875432 2457999999974 6777
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
.||++|+.|.....+... . + ....++.+++.+||.+..++.++
T Consensus 99 ~~v~~~~~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~--- 141 (269)
T PRK13648 99 SIVKYDVAFGLENHAVPY----------D----------E--------------MHRRVSEALKQVDMLERADYEPN--- 141 (269)
T ss_pred ccHHHHHHhhHHhcCCCH----------H----------H--------------HHHHHHHHHHHcCCchhhhCCcc---
Confidence 899999988643221100 0 0 01124567899999887776655
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.. ||++++|++
T Consensus 142 --~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~ 217 (269)
T PRK13648 142 --ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNK 217 (269)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEEC
Confidence 599999999999999999999999999999999999999999999997655789999887764 5554 999999999
Q ss_pred CeEEEecChhhHHH---HHHHcCCCCC
Q 003389 420 GQIVYQGPRDNVLE---FFEHMGFKCP 443 (824)
Q Consensus 420 G~iv~~G~~~~~~~---~f~~~G~~~p 443 (824)
|++++.|+++++.+ .+...|+++|
T Consensus 218 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 218 GTVYKEGTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred CEEEEecCHHHHhcCHHHHHhcCCCCC
Confidence 99999999887642 3444555555
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=343.32 Aligned_cols=213 Identities=21% Similarity=0.264 Sum_probs=173.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-------CceEEEEecCC--
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHD-- 254 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d-- 254 (824)
..+|+||||+|++||+++|+|+||||||||+++|+|+++|+...+|+|.|+|+++..... .+.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 469999999999999999999999999999999999998742348999999998865421 24799999997
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
.+.+.+||.+++.+....... ..+.+ ....+.++|+.+||++..+.
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~---------~~~~~------------------------~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKG---------MSKAE------------------------AFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcC---------CCHHH------------------------HHHHHHHHHHHcCCCChHHH-
Confidence 678999999999775432210 00000 01234667889999754322
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
. +..++.|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.++.+.|+|+++|+ ...+.++||+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd-l~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHD-LGVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECC-HHHHHHhCCEE
Confidence 2 245677999999999999999999999999999999999999999999999987668888887665 44777899999
Q ss_pred EEEcCCeEEEecChhhHH
Q 003389 415 ILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (824)
++|++|+|++.|+++++.
T Consensus 233 ~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998874
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=336.94 Aligned_cols=206 Identities=31% Similarity=0.472 Sum_probs=171.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 46999999999999999999999999999999999999887 9999999988754321 35699999998888889
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.+.....+.. .. +....++.+++.+||.+..++.++
T Consensus 92 tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~---- 133 (258)
T PRK13548 92 TVEEVVAMGRAPHGLS----------RA------------------------EDDALVAAALAQVDLAHLAGRDYP---- 133 (258)
T ss_pred CHHHHHHhhhcccCCC----------cH------------------------HHHHHHHHHHHHcCCHhHhcCCcc----
Confidence 9999998864221100 00 001124568889999877777765
Q ss_pred CCCCHHHHHHHHHHHHHH------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 341 RGISGGQKKRVTTGEMLV------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv------~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
.|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|+ ..++.++||+|
T Consensus 134 -~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~-~~~~~~~~d~i 211 (258)
T PRK13548 134 -QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHD-LNLAARYADRI 211 (258)
T ss_pred -cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC-HHHHHHhcCEE
Confidence 49999999999999999 59999999999999999999999999999984457888888765 44778899999
Q ss_pred EEEcCCeEEEecChhhHH
Q 003389 415 ILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (824)
++|++|++++.|+.+++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 212 VLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEECCEEEeeCCHHHHh
Confidence 999999999999987654
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=337.32 Aligned_cols=195 Identities=21% Similarity=0.281 Sum_probs=167.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+
T Consensus 25 ~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~ 99 (257)
T PRK11247 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVI 99 (257)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHH
Confidence 45999999999999999999999999999999999999987 9999999987643 246799999999888989999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+.+.... . . ...++.+++.+||.+..+..++ .|
T Consensus 100 enl~~~~~~-----------~--~---------------------------~~~~~~~l~~~gl~~~~~~~~~-----~L 134 (257)
T PRK11247 100 DNVGLGLKG-----------Q--W---------------------------RDAALQALAAVGLADRANEWPA-----AL 134 (257)
T ss_pred HHHHhcccc-----------h--H---------------------------HHHHHHHHHHcCChhHhcCChh-----hC
Confidence 999874210 0 0 0123567889999877776665 59
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEE
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv 423 (824)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.+..+.|+|++.|++. ++.++||+|++|++|+++
T Consensus 135 SgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~ 213 (257)
T PRK11247 135 SGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIG 213 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999997655789888776654 677899999999999999
Q ss_pred EecChh
Q 003389 424 YQGPRD 429 (824)
Q Consensus 424 ~~G~~~ 429 (824)
++|+.+
T Consensus 214 ~~~~~~ 219 (257)
T PRK11247 214 LDLTVD 219 (257)
T ss_pred eecccc
Confidence 988754
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=378.21 Aligned_cols=206 Identities=25% Similarity=0.398 Sum_probs=169.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++|+|||.++|+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|++.++. .
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-g 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-G 569 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCccccc-c
Confidence 46999999999999999999999999999999999999997 9999999999876543 478999999987775 5
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
|++|||.++. ++.+.+++.+++...+.++ .++ .|++..||.+|+. .
T Consensus 570 TIreNI~~g~-------------------------~~~~~e~i~~al~~a~l~~------~i~--~lp~GldT~ige~-G 615 (711)
T TIGR00958 570 SVRENIAYGL-------------------------TDTPDEEIMAAAKAANAHD------FIM--EFPNGYDTEVGEK-G 615 (711)
T ss_pred CHHHHHhcCC-------------------------CCCCHHHHHHHHHHcCCHH------HHH--hCCCccCCcccCC-C
Confidence 9999998862 1112233334433333221 222 4567789999964 5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
..||||||||++|||+|+++|++|+||||||+||+.++..|.+ ... ..++|+|++.|++ ++.+.||+|++|++|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~---~~~~TvIiItHrl--~~i~~aD~IivL~~G 689 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS---RASRTVLLIAHRL--STVERADQILVLKKG 689 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc---cCCCeEEEEeccH--HHHHhCCEEEEEECC
Confidence 6799999999999999999999999999999999999999988 222 2478999988876 467789999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
+++++|+++++.+
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999998864
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=351.70 Aligned_cols=207 Identities=24% Similarity=0.371 Sum_probs=176.6
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-------CCCceEEEEecCCCCCCCCC
Q 003389 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 189 ~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-------~~~~~i~yv~Q~d~~~~~lT 261 (824)
|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|+..+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999987 99999999886431 12467999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.|+.+. . ....++++++.+||++..++.++
T Consensus 93 v~enl~~~~~~---------------~-------------------------~~~~~~~~l~~~gl~~~~~~~~~----- 127 (352)
T PRK11144 93 VRGNLRYGMAK---------------S-------------------------MVAQFDKIVALLGIEPLLDRYPG----- 127 (352)
T ss_pred HHHHHHhhhhh---------------h-------------------------hHHHHHHHHHHcCCchhhhCCcc-----
Confidence 99999885310 0 00124668899999888887765
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|+++|++ .++.++||++++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCE
Confidence 49999999999999999999999999999999999999999999999876578888877654 57889999999999999
Q ss_pred EEEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 003389 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (824)
Q Consensus 422 iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (824)
++..|+++++. ..|....+|+|+
T Consensus 207 i~~~g~~~~i~--------~~p~~~~~~~~~ 229 (352)
T PRK11144 207 VKAFGPLEEVW--------ASSAMRPWLPKE 229 (352)
T ss_pred EEEecCHHHHH--------hCcchhhhhccc
Confidence 99999998874 345555566654
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=333.10 Aligned_cols=203 Identities=25% Similarity=0.389 Sum_probs=167.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC----CCceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~----~~~~i~yv~Q~d~~~~~ 259 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|+..+++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 46999999999999999999999999999999999999887 999999999876532 13569999999989999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc-CCCccccccccCc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDE 338 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-gL~~~~dt~vg~~ 338 (824)
+||.||+.++...... .+ . ...++.+++.+ ++.+..++.+.
T Consensus 95 ~tv~~~l~~~~~~~~~------------~~----------~--------------~~~~~~~l~~~~~l~~~~~~~~~-- 136 (237)
T PRK11614 95 MTVEENLAMGGFFAER------------DQ----------F--------------QERIKWVYELFPRLHERRIQRAG-- 136 (237)
T ss_pred CcHHHHHHHhhhccCh------------hH----------H--------------HHHHHHHHHHHHHHHHHHhCchh--
Confidence 9999999875321100 00 0 00123455555 46555555444
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||++++|+
T Consensus 137 ---~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~ 211 (237)
T PRK11614 137 ---TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNA-NQALKLADRGYVLE 211 (237)
T ss_pred ---hCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHhhCCEEEEEe
Confidence 5999999999999999999999999999999999999999999999876 488988877654 57889999999999
Q ss_pred CCeEEEecChhhHH
Q 003389 419 EGQIVYQGPRDNVL 432 (824)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (824)
+|++++.|+++++.
T Consensus 212 ~G~i~~~~~~~~~~ 225 (237)
T PRK11614 212 NGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999988763
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=341.73 Aligned_cols=205 Identities=22% Similarity=0.323 Sum_probs=169.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-------CCCceEEEEecCCC-
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDL- 255 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-------~~~~~i~yv~Q~d~- 255 (824)
+.+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 46999999999999999999999999999999999999987 99999999987532 11356999999862
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~ 334 (824)
.+..+||.||+.|+....+.. +.+ ....++++++.+||+ ...++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFS----------EDE------------------------AKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCCChhHhhCC
Confidence 344689999998864322110 000 011356788999996 566776
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|+|+++|+ ..++.++||++
T Consensus 143 ~~-----~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~-~~~~~~~~d~v 215 (287)
T PRK13641 143 PF-----ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHN-MDDVAEYADDV 215 (287)
T ss_pred cc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-HHHHHHhCCEE
Confidence 65 4999999999999999999999999999999999999999999999975 48888887654 55788999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 003389 415 ILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (824)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=335.42 Aligned_cols=221 Identities=22% Similarity=0.294 Sum_probs=173.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... +..++|++|++.+++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 46999999999999999999999999999999999999987 9999999998764321 2358999999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.++....... +......... ...+. + .+....++.+++.+||.+..++.++
T Consensus 95 ~tv~enl~~~~~~~~~~---~~~~~~~~~~---~~~~~-~------------~~~~~~~~~~l~~~gl~~~~~~~~~--- 152 (255)
T PRK11300 95 MTVIENLLVAQHQQLKT---GLFSGLLKTP---AFRRA-E------------SEALDRAATWLERVGLLEHANRQAG--- 152 (255)
T ss_pred CcHHHHHHHhhhccccc---hhhhhhcccc---ccccc-h------------hHHHHHHHHHHHhCChhhhhhCChh---
Confidence 99999999864311000 0000000000 00000 0 0011235667889999877777765
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|+++|++ .++.++||++++|++
T Consensus 153 --~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 153 --NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQ 229 (255)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 49999999999999999999999999999999999999999999999765578888887654 478899999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|++++.|+++++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999987753
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=332.18 Aligned_cols=211 Identities=26% Similarity=0.370 Sum_probs=171.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 46999999999999999999999999999999999999887 9999999988754321 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.+........ . ..+. ....+ .....++++++.+|+++..++.++
T Consensus 92 ~tv~~nl~~~~~~~~~~--~---~~~~--------~~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~--- 142 (242)
T TIGR03411 92 LTVFENLELALPRDKSV--F---ASLF--------FRLSA-------------EEKDRIEEVLETIGLADEADRLAG--- 142 (242)
T ss_pred CCHHHHHHHhhhccccc--c---cccc--------cccHH-------------HHHHHHHHHHHHcCCchhhcCChh---
Confidence 99999998864311000 0 0000 00000 011235678899999887777765
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|+++|++ .++.++||++++|++
T Consensus 143 --~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 143 --LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDM-EFVRSIADKVTVLHQ 217 (242)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCH-HHHHHhCCEEEEEEC
Confidence 4999999999999999999999999999999999999999999999975 57888887654 478889999999999
Q ss_pred CeEEEecChhhH
Q 003389 420 GQIVYQGPRDNV 431 (824)
Q Consensus 420 G~iv~~G~~~~~ 431 (824)
|+++..|+.+++
T Consensus 218 g~~~~~~~~~~~ 229 (242)
T TIGR03411 218 GSVLAEGSLDQV 229 (242)
T ss_pred CeEEeeCCHHHH
Confidence 999999998765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=329.33 Aligned_cols=197 Identities=24% Similarity=0.344 Sum_probs=165.3
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-------CceEEEEecCCCCC
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLHH 257 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d~~~ 257 (824)
.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 5999999999999999999999999999999999999887 9999999998764322 24699999999889
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||.||+.+.....+.. . .+ ....+.++++.+||.+..++.++
T Consensus 101 ~~~tv~~~l~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~~~l~~~~~~~~~- 145 (228)
T PRK10584 101 PTLNALENVELPALLRGES----------S----------RQ--------------SRNGAKALLEQLGLGKRLDHLPA- 145 (228)
T ss_pred CCcCHHHHHHHHHHhcCCC----------H----------HH--------------HHHHHHHHHHHcCCHhHhhCChh-
Confidence 9999999998764322110 0 00 01234668899999877777665
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++ +.||++++|
T Consensus 146 ----~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l 219 (228)
T PRK10584 146 ----QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRL 219 (228)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEE
Confidence 499999999999999999999999999999999999999999999997655789999887765 45 569999999
Q ss_pred cCCeEEEe
Q 003389 418 SEGQIVYQ 425 (824)
Q Consensus 418 ~~G~iv~~ 425 (824)
++|++++.
T Consensus 220 ~~g~i~~~ 227 (228)
T PRK10584 220 VNGQLQEE 227 (228)
T ss_pred ECCEEEec
Confidence 99999753
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=332.78 Aligned_cols=205 Identities=24% Similarity=0.352 Sum_probs=171.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC----------------CCceE
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----------------PQRTC 247 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~----------------~~~~i 247 (824)
+++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 46999999999999999999999999999999999999887 999999998874321 14579
Q ss_pred EEEecCCCCCCCCCHHHHHHHhhhh-cCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcC
Q 003389 248 AYISQHDLHHGEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326 (824)
Q Consensus 248 ~yv~Q~d~~~~~lTV~E~L~f~a~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg 326 (824)
+|++|++.+++.+||.||+.++... .+.. . .+ ....+.++++.+|
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~~g 135 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLVLGMA----------R----------AE--------------AEKRAMELLDMVG 135 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhcCCC----------H----------HH--------------HHHHHHHHHHHcC
Confidence 9999999999999999999875321 1100 0 00 0112456788999
Q ss_pred CCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh
Q 003389 327 LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (824)
Q Consensus 327 L~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e 406 (824)
|++..+..+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|+++|++ .+
T Consensus 136 l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~ 209 (252)
T TIGR03005 136 LADKADHMPA-----QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GF 209 (252)
T ss_pred ChhHhhcChh-----hcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HH
Confidence 9877776554 59999999999999999999999999999999999999999999999875578888887765 46
Q ss_pred HHhhcCeEEEEcCCeEEEecChhhH
Q 003389 407 TYDLFDDIILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 407 ~~~lfD~iilL~~G~iv~~G~~~~~ 431 (824)
+.++||++++|++|++++.|+.+++
T Consensus 210 ~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 210 AREFADRVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHH
Confidence 7889999999999999999998776
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=337.58 Aligned_cols=205 Identities=21% Similarity=0.322 Sum_probs=167.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-------CCceEEEEecCCC-
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDL- 255 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~i~yv~Q~d~- 255 (824)
+++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 35999999999999999999999999999999999999987 999999999875421 1356999999862
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~ 334 (824)
.+...||+||+.+.....+.. .. + ....++++++.+||. ...++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~ 142 (280)
T PRK13649 97 QLFEETVLKDVAFGPQNFGVS----------QE----------E--------------AEALAREKLALVGISESLFEKN 142 (280)
T ss_pred hhccccHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCCChhhhhCC
Confidence 333469999998764322110 00 0 011245678889996 345655
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .++|+|+++|++ .++.++||++
T Consensus 143 ~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~-~~~~~~~d~i 215 (280)
T PRK13649 143 PF-----ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLM-DDVANYADFV 215 (280)
T ss_pred cc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccH-HHHHHhCCEE
Confidence 54 5999999999999999999999999999999999999999999999976 478988887765 4777899999
Q ss_pred EEEcCCeEEEecChhhHH
Q 003389 415 ILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (824)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=336.52 Aligned_cols=205 Identities=27% Similarity=0.357 Sum_probs=169.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC--C---CCCceEEEEecCCC-CC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE--F---VPQRTCAYISQHDL-HH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~--~---~~~~~i~yv~Q~d~-~~ 257 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. . ..++.++|++|++. .+
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI 90 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc
Confidence 46999999999999999999999999999999999999987 9999999998742 1 11356999999864 34
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
...||.||+.+.....+.. .. + ....++.+++.+||.+..++.++
T Consensus 91 ~~~~~~~~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~- 135 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVP----------EA----------E--------------ITRRVDEALTLVDAQHFRHQPIQ- 135 (271)
T ss_pred ccccHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCCHhHhcCCch-
Confidence 5568999998764322210 00 0 01124568889999887777665
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+|++.|+ ..++.++||++++|
T Consensus 136 ----~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~-~~~~~~~~d~i~~l 209 (271)
T PRK13638 136 ----CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHD-IDLIYEISDAVYVL 209 (271)
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC-HHHHHHhCCEEEEE
Confidence 4999999999999999999999999999999999999999999999975 47888887665 45777899999999
Q ss_pred cCCeEEEecChhhHH
Q 003389 418 SEGQIVYQGPRDNVL 432 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (824)
++|++++.|+++++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 210 RQGQILTHGAPGEVF 224 (271)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=336.27 Aligned_cols=206 Identities=23% Similarity=0.326 Sum_probs=170.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCC--C
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD--L 255 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d--~ 255 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++.... .++.++|++|++ .
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 100 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhh
Confidence 56999999999999999999999999999999999999987 999999999875432 135699999986 4
Q ss_pred CCCCCCHHHHHHHhhhhc-CCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccc
Q 003389 256 HHGEMTVRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~-~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt 333 (824)
+++.+||+||+.+..... ... .. .....++++++.+||. ...+.
T Consensus 101 ~~~~~tv~~~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHLTSLD----------ES------------------------EQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred cCCCCCHHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCChhhhhC
Confidence 667899999998753211 000 00 0012346688999995 56666
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|+ ...+.++||+
T Consensus 147 ~~~-----~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~-~~~~~~~~d~ 220 (265)
T TIGR02769 147 LPR-----QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD-LRLVQSFCQR 220 (265)
T ss_pred Chh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC-HHHHHHHhcE
Confidence 654 5999999999999999999999999999999999999999999999986557888887765 4477789999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 003389 414 IILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (824)
+++|++|++++.|+++++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 221 VAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEeCCEEEEECCHHHHc
Confidence 9999999999999988764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=327.18 Aligned_cols=197 Identities=27% Similarity=0.359 Sum_probs=169.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .+.++|++|++.+++.+||+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 46999999999999999999999999999999999999887 999999998775422 35799999999889999999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+.+.....+.. ...+..+++.+||++..|..++ .|
T Consensus 89 ~~~~~~~~~~~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~~~-----~L 125 (223)
T TIGR03740 89 ENLKVHTTLLGLP--------------------------------------DSRIDEVLNIVDLTNTGKKKAK-----QF 125 (223)
T ss_pred HHHHHHHHHcCCC--------------------------------------HHHHHHHHHHcCCcHHHhhhHh-----hC
Confidence 9998764322100 0124557889999887777665 49
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEE
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv 423 (824)
|||||||++||++++.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+++|++. ++.+.||++++|++|+++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHILS-EVQQLADHIGIISEGVLG 203 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999975 4788888877654 678899999999999999
Q ss_pred EecChh
Q 003389 424 YQGPRD 429 (824)
Q Consensus 424 ~~G~~~ 429 (824)
+.|++.
T Consensus 204 ~~~~~~ 209 (223)
T TIGR03740 204 YQGKIN 209 (223)
T ss_pred EecChh
Confidence 999864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=344.96 Aligned_cols=207 Identities=20% Similarity=0.256 Sum_probs=173.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCC--C
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD--L 255 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d--~ 255 (824)
..+|+|||++|++||+++|+|+||||||||+++|+|+++|. +|+|.++|+++.... .++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 46999999999999999999999999999999999999886 999999999876532 235799999997 5
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~ 334 (824)
+.+.+||.+++.+..+.... +.+.+ ....+.++|+.+||. ...++.
T Consensus 105 l~p~~~v~~~l~~~~~~~~~---------~~~~~------------------------~~~~~~~~l~~~gL~~~~~~~~ 151 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTS---------LSAAE------------------------RREKALAMMAKVGLRPEHYDRY 151 (327)
T ss_pred cCCccCHHHHHHHHHHHccC---------CCHHH------------------------HHHHHHHHHHHCCCChHHhcCC
Confidence 88999999999876433210 00000 112356789999996 355665
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
+ +.|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+..+.|+|+++| +...+.++||+|
T Consensus 152 p-----~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTH-dl~~~~~~adrv 225 (327)
T PRK11308 152 P-----HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISH-DLSVVEHIADEV 225 (327)
T ss_pred C-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC-CHHHHHHhCCEE
Confidence 5 4599999999999999999999999999999999999999999999998766888888765 455778899999
Q ss_pred EEEcCCeEEEecChhhHH
Q 003389 415 ILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (824)
++|++|++++.|+.+++.
T Consensus 226 ~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999998874
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=332.82 Aligned_cols=221 Identities=25% Similarity=0.338 Sum_probs=195.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-------CceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d~~ 256 (824)
..-++|+|++|+.||+..|||-||||||||+++|.++.+|+ +|+|+++|.++..... ++.+++|+|+..+
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaL 117 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFAL 117 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcc
Confidence 34689999999999999999999999999999999999997 9999999998865432 4679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
+|+.||.||..|+...+|+... | .+.+..+.|+..||....+.++.
T Consensus 118 lPhrtVl~Nv~fGLev~Gv~~~----------e------------------------r~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 118 LPHRTVLENVAFGLEVQGVPKA----------E------------------------REERALEALELVGLEGYADKYPN 163 (386)
T ss_pred ccchhHhhhhhcceeecCCCHH----------H------------------------HHHHHHHHHHHcCchhhhhcCcc
Confidence 9999999999999999987421 1 12245678999999999987765
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+||||+||||.+||||+.+|+|||||||+|+|||--+.++.+-|.++.+..++|||+++ |+..|.+++.|||.+
T Consensus 164 -----eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFit-HDLdEAlriG~rIai 237 (386)
T COG4175 164 -----ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFIT-HDLDEALRIGDRIAI 237 (386)
T ss_pred -----cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEe-cCHHHHHhccceEEE
Confidence 59999999999999999999999999999999999999999999999998899999865 667899999999999
Q ss_pred EcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHh
Q 003389 417 LSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 455 (824)
|.+|+||..|++++++. .|...-+++|..++
T Consensus 238 mkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 238 MKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred ecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 99999999999999963 56666677777654
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=332.07 Aligned_cols=207 Identities=22% Similarity=0.369 Sum_probs=168.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
..+|+|+|++|++||+++|+|||||||||||++|+|+++|. ...+|+|+++|+++... ..++.++|++|+..+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (247)
T TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNP 93 (247)
T ss_pred eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCccc
Confidence 35999999999999999999999999999999999999762 12389999999987532 124679999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC----cccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (824)
++ +||+||+.+....++... .. + ....++.+++.+||. +..+
T Consensus 94 ~~-~tv~e~l~~~~~~~~~~~---------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~ 139 (247)
T TIGR00972 94 FP-MSIYDNIAYGPRLHGIKD---------KK----------E--------------LDEIVEESLKKAALWDEVKDRLH 139 (247)
T ss_pred CC-CCHHHHHHhHHHhcCCCC---------HH----------H--------------HHHHHHHHHHHcCCCcchhhHhh
Confidence 88 999999988643321100 00 0 011345688899997 5556
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+.++ .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 140 ~~~~-----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~d 211 (247)
T TIGR00972 140 DSAL-----GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNM-QQAARISD 211 (247)
T ss_pred CCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCH-HHHHHhCC
Confidence 5554 5999999999999999999999999999999999999999999999976 47888877654 47788999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
++++|++|++++.|+++++.
T Consensus 212 ~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 212 RTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=320.44 Aligned_cols=182 Identities=45% Similarity=0.747 Sum_probs=156.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--CCCceEEEEecCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~i~yv~Q~d~~~~~l 260 (824)
++.+|+|+|++|++|++++|+||||||||||+++|+|+++|....+|+|.++|+++... ..++.++|++|++.+++.+
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 98 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL 98 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCC
Confidence 45799999999999999999999999999999999999983212499999999987643 2246799999999999999
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.++.+.. .++. +
T Consensus 99 tv~~~l~~~~~~~---------------------------------------------------------~~~~-----~ 116 (202)
T cd03233 99 TVRETLDFALRCK---------------------------------------------------------GNEF-----V 116 (202)
T ss_pred cHHHHHhhhhhhc---------------------------------------------------------cccc-----h
Confidence 9999998753100 1222 3
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|+++||+.+++.++||++++|++|
T Consensus 117 ~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G 196 (202)
T cd03233 117 RGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEG 196 (202)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECC
Confidence 45999999999999999999999999999999999999999999999986546788888888878899999999999999
Q ss_pred eEEEec
Q 003389 421 QIVYQG 426 (824)
Q Consensus 421 ~iv~~G 426 (824)
++++.|
T Consensus 197 ~i~~~g 202 (202)
T cd03233 197 RQIYYG 202 (202)
T ss_pred EEEecC
Confidence 998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=338.82 Aligned_cols=208 Identities=25% Similarity=0.322 Sum_probs=172.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCC-CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~-~~~~ 259 (824)
+++|+|||++|++|++++|+||||||||||+++|+|+++|....+|+|+++|+++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 35999999999999999999999999999999999999886112399999999876422 2357999999974 6778
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.|.....+.. +.+ ....++.+++.+||.+..++.+.
T Consensus 100 ~tv~enl~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~L~~~~~~~~~--- 142 (282)
T PRK13640 100 ATVGDDVAFGLENRAVP----------RPE------------------------MIKIVRDVLADVGMLDYIDSEPA--- 142 (282)
T ss_pred CCHHHHHHhhHHhCCCC----------HHH------------------------HHHHHHHHHHHCCChhHhcCCcc---
Confidence 89999998864322110 000 01235668899999887777665
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..|.|+|+++|++. ++ ..||++++|++
T Consensus 143 --~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~ 218 (282)
T PRK13640 143 --NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDD 218 (282)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC
Confidence 599999999999999999999999999999999999999999999998655889999887765 45 57999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|++++.|+++++.
T Consensus 219 G~i~~~g~~~~~~ 231 (282)
T PRK13640 219 GKLLAQGSPVEIF 231 (282)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998875
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=324.77 Aligned_cols=195 Identities=23% Similarity=0.341 Sum_probs=163.9
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCHHHHHH
Q 003389 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLD 267 (824)
Q Consensus 189 ~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV~E~L~ 267 (824)
|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999887 9999999998754322 367999999999999999999998
Q ss_pred HhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHH
Q 003389 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (824)
Q Consensus 268 f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGq 347 (824)
+........ .+ .....++++++.+||++..++.+. .|||||
T Consensus 93 ~~~~~~~~~---------~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 133 (211)
T cd03298 93 LGLSPGLKL---------TA-------------------------EDRQAIEVALARVGLAGLEKRLPG-----ELSGGE 133 (211)
T ss_pred cccccccCc---------cH-------------------------HHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHH
Confidence 753211000 00 001134668899999887777665 599999
Q ss_pred HHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEec
Q 003389 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426 (824)
Q Consensus 348 rqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G 426 (824)
|||++||++|+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|++.|+ ..++.++||++++|++|+++..|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~-~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQ-PEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999999999986557888887665 45777899999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=328.13 Aligned_cols=204 Identities=23% Similarity=0.293 Sum_probs=167.9
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC----CCCCcceEeeCCcccCCCCC-CceEEEEecCCC--CCC
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK----DLRASGKITYCGHELNEFVP-QRTCAYISQHDL--HHG 258 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~----~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~--~~~ 258 (824)
+|+|+|++|++|++++|+||||||||||+++|+|+++| + +|+|.++|+++..... ++.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57999999999999999999999999999999999987 5 9999999998764322 257999999974 557
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc---cccccc
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI---CADTMV 335 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~---~~dt~v 335 (824)
.+|+.|++.+.....+.. .. +....++++++.+||++ ..++.+
T Consensus 78 ~~t~~~~~~~~~~~~~~~---------~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~ 123 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKL---------SK-------------------------QARALILEALEAVGLPDPEEVLKKYP 123 (230)
T ss_pred ccCHHHHHHHHHHHcCcc---------HH-------------------------HHHHHHHHHHHHcCCCchHHHHhCCh
Confidence 789999997754322110 00 00123566889999973 445554
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
+ .|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++++..++|+|++.|++ +++..+||+++
T Consensus 124 ~-----~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~ 197 (230)
T TIGR02770 124 F-----QLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVA 197 (230)
T ss_pred h-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 4 59999999999999999999999999999999999999999999999865578888887654 47888999999
Q ss_pred EEcCCeEEEecChhhHH
Q 003389 416 LLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (824)
+|++|+++..|+++++.
T Consensus 198 ~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 198 VMDDGRIVERGTVKEIF 214 (230)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=328.34 Aligned_cols=206 Identities=27% Similarity=0.339 Sum_probs=174.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-CCceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-~~~~i~yv~Q~d~~~~~lTV 262 (824)
+.+|+|+|++|+||++++|+||||||||||+++|+|.++|+ +|+|+++|+++.... .++.++|++|+...++.+||
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcH
Confidence 46999999999999999999999999999999999999987 999999999876432 24679999999998889999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.+.....+.. +. .....++++++.+||++..++.+. .
T Consensus 90 ~~nl~~~~~~~~~~---------------------~~-------------~~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (232)
T cd03300 90 FENIAFGLRLKKLP---------------------KA-------------EIKERVAEALDLVQLEGYANRKPS-----Q 130 (232)
T ss_pred HHHHHHHHHhcCCC---------------------HH-------------HHHHHHHHHHHHcCCchhhcCChh-----h
Confidence 99998865432210 00 001134668899999887777665 5
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.++||++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKI 209 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999865588999987765 467889999999999999
Q ss_pred EEecChhhHH
Q 003389 423 VYQGPRDNVL 432 (824)
Q Consensus 423 v~~G~~~~~~ 432 (824)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (232)
T cd03300 210 QQIGTPEEIY 219 (232)
T ss_pred EecCCHHHHH
Confidence 9999877653
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-38 Score=343.41 Aligned_cols=210 Identities=20% Similarity=0.260 Sum_probs=170.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC-CCcceEeeCCcccCCCCC-------CceEEEEecCC-
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL-RASGKITYCGHELNEFVP-------QRTCAYISQHD- 254 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~-~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d- 254 (824)
..+|+||||+|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 469999999999999999999999999999999999987422 248999999998765421 24699999997
Q ss_pred -CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcc---
Q 003389 255 -LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC--- 330 (824)
Q Consensus 255 -~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~--- 330 (824)
.+.|.+||.+++.......... .+. +....+.++|+.+||++.
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~---------~~~------------------------~~~~~~~~~L~~~gL~~~~~~ 146 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGG---------NKK------------------------TRRQRAIDLLNQVGIPDPASR 146 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCC---------CHH------------------------HHHHHHHHHHHHCCCCChHHH
Confidence 4789999999887654321100 000 011235678999999742
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh
Q 003389 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (824)
Q Consensus 331 ~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l 410 (824)
.+. .++.|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.++.+.|+|+++|+ ...+.++
T Consensus 147 l~~-----~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHd-l~~~~~~ 220 (326)
T PRK11022 147 LDV-----YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD-LALVAEA 220 (326)
T ss_pred HhC-----CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHh
Confidence 343 3456999999999999999999999999999999999999999999999987668888887665 4477889
Q ss_pred cCeEEEEcCCeEEEecChhhHH
Q 003389 411 FDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 411 fD~iilL~~G~iv~~G~~~~~~ 432 (824)
||+|++|++|++++.|+++++.
T Consensus 221 adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 221 AHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred CCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999998874
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=329.62 Aligned_cols=203 Identities=24% Similarity=0.317 Sum_probs=168.6
Q ss_pred ccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--CCCceEEEEe-cCCCCC
Q 003389 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYIS-QHDLHH 257 (824)
Q Consensus 181 ~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~i~yv~-Q~d~~~ 257 (824)
++.+++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++ |++.++
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW 107 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence 34567999999999999999999999999999999999999987 99999999875431 1245799998 556777
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||+||+.+.....+... .+ ....++++++.+||++..++.+++
T Consensus 108 ~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~ 153 (236)
T cd03267 108 WDLPVIDSFYLLAAIYDLPP----------AR------------------------FKKRLDELSELLDLEELLDTPVRQ 153 (236)
T ss_pred CCCcHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCChhHhcCChhh
Confidence 88999999988644322110 00 011245678899999888887764
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++|
T Consensus 154 -----LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l 227 (236)
T cd03267 154 -----LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVI 227 (236)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999875578988887665 4778899999999
Q ss_pred cCCeEEEec
Q 003389 418 SEGQIVYQG 426 (824)
Q Consensus 418 ~~G~iv~~G 426 (824)
.+|++++.|
T Consensus 228 ~~G~i~~~g 236 (236)
T cd03267 228 DKGRLLYDG 236 (236)
T ss_pred eCCEEEecC
Confidence 999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=334.30 Aligned_cols=207 Identities=20% Similarity=0.291 Sum_probs=165.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~--~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|||++|++||+++|+|||||||||||++|+|+++|.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 99 (254)
T PRK14273 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNP 99 (254)
T ss_pred ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccc
Confidence 459999999999999999999999999999999999998621 2389999999886421 124679999999877
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC----cccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (824)
++ +||+||+.+.....+... . .+ ....++.+++.+++. +..+
T Consensus 100 ~~-~tv~eni~~~~~~~~~~~---------~----------~~--------------~~~~~~~~l~~~~l~~~l~~~~~ 145 (254)
T PRK14273 100 FL-MSIYDNISYGPKIHGTKD---------K----------KK--------------LDEIVEQSLKKSALWNEVKDKLN 145 (254)
T ss_pred cc-CcHHHHHHHHHHhcCCCC---------H----------HH--------------HHHHHHHHHHHhCCchhhHHHHh
Confidence 74 899999988643221100 0 00 011245567777763 3445
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+.+ +.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 146 ~~~-----~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~sH~~-~~~~~~~d 217 (254)
T PRK14273 146 TNA-----LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--SYTIIIVTHNM-QQAGRISD 217 (254)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCC
Confidence 544 45999999999999999999999999999999999999999999999964 67888876654 47788999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
++++|++|+++..|+++++.
T Consensus 218 ~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 218 RTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=333.68 Aligned_cols=205 Identities=20% Similarity=0.312 Sum_probs=165.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|+++|. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 45999999999999999999999999999999999998751 01399999999887432 124569999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC----cccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (824)
++ +||+||+.|..+..+.. .++ ....++++++.+|+. +..+
T Consensus 105 ~~-~tv~enl~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK14268 105 FP-MSIYDNVAYGPRIHGAN----------KKD------------------------LDGVVENALRSAALWDETSDRLK 149 (258)
T ss_pred Cc-ccHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCCCcchhhhhc
Confidence 77 89999999864322210 000 011245678888874 3345
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+.+ +.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|++.|++ .++.++||
T Consensus 150 ~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~tiiivsH~~-~~~~~~~d 221 (258)
T PRK14268 150 SPA-----LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--DYTIVIVTHNM-QQAARISD 221 (258)
T ss_pred CCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--CCEEEEEECCH-HHHHHhCC
Confidence 444 45999999999999999999999999999999999999999999999864 68888877654 46778999
Q ss_pred eEEEEcCCeEEEecChhhH
Q 003389 413 DIILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~ 431 (824)
++++|++|++++.|+++++
T Consensus 222 ~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 222 YTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999998876
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=328.35 Aligned_cols=202 Identities=27% Similarity=0.319 Sum_probs=167.3
Q ss_pred ccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHH
Q 003389 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETL 266 (824)
Q Consensus 187 L~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L 266 (824)
|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ..+|++|++.+++.+||.||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 58999999999999999999999999999999999887 9999999998765322 358999999999999999999
Q ss_pred HHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHH
Q 003389 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (824)
Q Consensus 267 ~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGG 346 (824)
.+.......+ ..+. +....++++++.+||++..++.++ .||||
T Consensus 76 ~~~~~~~~~~--------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPD--------LSKS------------------------ERRAIVEEHIALVGLTEAADKRPG-----QLSGG 118 (230)
T ss_pred HHHHHhcccC--------CCHH------------------------HHHHHHHHHHHHcCCHHHHcCChh-----hCCHH
Confidence 8753210000 0000 001134568899999887777765 49999
Q ss_pred HHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEec
Q 003389 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426 (824)
Q Consensus 347 qrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G 426 (824)
|||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.++||++++|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEeccc
Confidence 999999999999999999999999999999999999999999875578888887664 4788899999999999999988
Q ss_pred ChhhH
Q 003389 427 PRDNV 431 (824)
Q Consensus 427 ~~~~~ 431 (824)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 65443
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=324.21 Aligned_cols=194 Identities=29% Similarity=0.428 Sum_probs=160.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCC-CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~-~~~~ 259 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 46999999999999999999999999999999999999887 999999998875432 1357999999864 4678
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.+.....+.. .. + ....++++++.+||++..++.++
T Consensus 91 ~t~~~~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~--- 133 (211)
T cd03225 91 PTVEEEVAFGLENLGLP----------EE----------E--------------IEERVEEALELVGLEGLRDRSPF--- 133 (211)
T ss_pred CcHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCcHhhhcCCcc---
Confidence 89999998764322110 00 0 01124567889999877776665
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++. +.|+|+++|++ .++.++||++++|++
T Consensus 134 --~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~-~~~~~~~d~i~~l~~ 209 (211)
T cd03225 134 --TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDL-DLLLELADRVIVLED 209 (211)
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH-HHHHHhCCEEEEEeC
Confidence 49999999999999999999999999999999999999999999999864 78888887664 477888999999999
Q ss_pred Ce
Q 003389 420 GQ 421 (824)
Q Consensus 420 G~ 421 (824)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=333.80 Aligned_cols=205 Identities=23% Similarity=0.306 Sum_probs=169.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC----------------CCCceE
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF----------------VPQRTC 247 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~----------------~~~~~i 247 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++... ..++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 46999999999999999999999999999999999999886 99999999876421 113579
Q ss_pred EEEecCCCCCCCCCHHHHHHHhhh-hcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcC
Q 003389 248 AYISQHDLHHGEMTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326 (824)
Q Consensus 248 ~yv~Q~d~~~~~lTV~E~L~f~a~-~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg 326 (824)
+|++|++.+++.+||+||+.++.. ..+.. + . +....+.++++.+|
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~~----------~----------~--------------~~~~~~~~~l~~~g 140 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------K----------Q--------------EARERAVKYLAKVG 140 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCCC----------H----------H--------------HHHHHHHHHHHHcC
Confidence 999999999999999999987532 11110 0 0 00113456889999
Q ss_pred CCccc-cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCch
Q 003389 327 LDICA-DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP 405 (824)
Q Consensus 327 L~~~~-dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~ 405 (824)
|.+.. +..+ +.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .++|+|++.|++ .
T Consensus 141 l~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~-~ 213 (257)
T PRK10619 141 IDERAQGKYP-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEM-G 213 (257)
T ss_pred CChhhhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-H
Confidence 97653 5444 46999999999999999999999999999999999999999999999976 488988887664 4
Q ss_pred hHHhhcCeEEEEcCCeEEEecChhhHH
Q 003389 406 ETYDLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 406 e~~~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
++.++||++++|++|++++.|+++++.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 777899999999999999999988763
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=327.43 Aligned_cols=202 Identities=23% Similarity=0.387 Sum_probs=170.1
Q ss_pred cceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCHHHHH
Q 003389 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETL 266 (824)
Q Consensus 188 ~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV~E~L 266 (824)
.|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.+||.||+
T Consensus 16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 92 (232)
T PRK10771 16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNI 92 (232)
T ss_pred ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHH
Confidence 3899999999999999999999999999999999887 9999999998764322 35799999999999999999999
Q ss_pred HHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHH
Q 003389 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (824)
Q Consensus 267 ~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGG 346 (824)
.+.... .... .+ .....++++++.+||++..++.+. .||||
T Consensus 93 ~~~~~~-~~~~--------~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 133 (232)
T PRK10771 93 GLGLNP-GLKL--------NA-------------------------AQREKLHAIARQMGIEDLLARLPG-----QLSGG 133 (232)
T ss_pred hccccc-ccCC--------CH-------------------------HHHHHHHHHHHHcCcHHHHhCCcc-----cCCHH
Confidence 875321 0000 00 001235668899999888887775 49999
Q ss_pred HHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEec
Q 003389 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426 (824)
Q Consensus 347 qrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G 426 (824)
|||||+||++++.+|++++|||||+|||..++..+.+.|+++++..++|+|++.|++. ++.++||++++|++|++++.|
T Consensus 134 ~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g 212 (232)
T PRK10771 134 QRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDG 212 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999997655789888876654 678899999999999999999
Q ss_pred ChhhHH
Q 003389 427 PRDNVL 432 (824)
Q Consensus 427 ~~~~~~ 432 (824)
+.+++.
T Consensus 213 ~~~~~~ 218 (232)
T PRK10771 213 PTDELL 218 (232)
T ss_pred CHHHHH
Confidence 987764
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=330.00 Aligned_cols=201 Identities=24% Similarity=0.360 Sum_probs=167.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++ .
T Consensus 16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (241)
T PRK14250 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-G 91 (241)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-h
Confidence 45999999999999999999999999999999999999887 999999998875432 2457999999987776 6
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccccccCcc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEM 339 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~ 339 (824)
||+||+.+.....+. ....+..+++.+||+ +..++.+.
T Consensus 92 tv~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~--- 130 (241)
T PRK14250 92 TVKDNIEYGPMLKGE--------------------------------------KNVDVEYYLSIVGLNKEYATRDVK--- 130 (241)
T ss_pred hHHHHHhcchhhcCc--------------------------------------HHHHHHHHHHHcCCCHHHhhCCcc---
Confidence 999999875321100 001235578889996 45555544
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++..+.|+|++.|++ .++.++||+|++|++
T Consensus 131 --~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~ 207 (241)
T PRK14250 131 --NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNK 207 (241)
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeC
Confidence 59999999999999999999999999999999999999999999999764578988877654 467889999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|+++..|+++++.
T Consensus 208 G~i~~~~~~~~~~ 220 (241)
T PRK14250 208 GILVEYAKTYDFF 220 (241)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988763
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=325.04 Aligned_cols=200 Identities=29% Similarity=0.428 Sum_probs=161.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCC--CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH--GEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~--~~lT 261 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .++.++|++|++.+. +.+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHH--HHhheEEeccccccccCCCCc
Confidence 46999999999999999999999999999999999999887 9999999987642 346799999987653 3489
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.+....... . .. .... .....++.+++.+||++..++.++
T Consensus 87 v~e~l~~~~~~~~~-~----~~-----------~~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~----- 131 (213)
T cd03235 87 VRDVVLMGLYGHKG-L----FR-----------RLSK--------------ADKAKVDEALERVGLSELADRQIG----- 131 (213)
T ss_pred HHHHHHhccccccc-c----cc-----------CCCH--------------HHHHHHHHHHHHcCCHHHHhCCcc-----
Confidence 99999885421100 0 00 0000 001235668899999877777665
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||++++|++|
T Consensus 132 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDL-GLVLEYFDRVLLLNRT- 208 (213)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEEEEcCc-
Confidence 4999999999999999999999999999999999999999999999986 578888887664 4778899999999886
Q ss_pred EEEec
Q 003389 422 IVYQG 426 (824)
Q Consensus 422 iv~~G 426 (824)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 56554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=347.02 Aligned_cols=199 Identities=26% Similarity=0.437 Sum_probs=170.7
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-------CCCceEEEEecCCCCCCCCC
Q 003389 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 189 ~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-------~~~~~i~yv~Q~d~~~~~lT 261 (824)
|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 999999999999999999999999999999999987 99999999887432 12467999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.|+...... .+ ....++++++.+||++..++.+.
T Consensus 92 v~enl~~~~~~~~~------------~~------------------------~~~~~~~~l~~~gL~~~~~~~~~----- 130 (354)
T TIGR02142 92 VRGNLRYGMKRARP------------SE------------------------RRISFERVIELLGIGHLLGRLPG----- 130 (354)
T ss_pred HHHHHHHHhhccCh------------hH------------------------HHHHHHHHHHHcCChhHhcCChh-----
Confidence 99999986431100 00 01135668899999988887765
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|+++|++ .++..+||++++|++|+
T Consensus 131 ~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGR 209 (354)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCE
Confidence 49999999999999999999999999999999999999999999999875578888887654 47888999999999999
Q ss_pred EEEecChhhHH
Q 003389 422 IVYQGPRDNVL 432 (824)
Q Consensus 422 iv~~G~~~~~~ 432 (824)
++..|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999988764
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=342.79 Aligned_cols=258 Identities=24% Similarity=0.358 Sum_probs=216.9
Q ss_pred hhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccc
Q 003389 98 QDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLV 177 (824)
Q Consensus 98 ~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~ 177 (824)
...+..-+|+.+.+.+.|+ ...++.++-|+-.+..+++++- .
T Consensus 303 ~~Ar~s~~Rl~~lL~~~p~--------~~~~m~LP~P~g~L~Ve~l~~~---P--------------------------- 344 (580)
T COG4618 303 VAARQSYKRLNELLAELPA--------AAERMPLPAPQGALSVERLTAA---P--------------------------- 344 (580)
T ss_pred HHHHHHHHHHHHHHHhCcc--------ccCCCCCCCCCceeeEeeeeec---C---------------------------
Confidence 3456667888888777666 2345778888888999988762 1
Q ss_pred cCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCC
Q 003389 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD 254 (824)
Q Consensus 178 ~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d 254 (824)
...++++|+||||.+.+|+.++|+||||||||||.|+|.|..+|. +|.|.+||.+++.+.+ -+.|||.||+-
T Consensus 345 --Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdV 419 (580)
T COG4618 345 --PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDV 419 (580)
T ss_pred --CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccc
Confidence 112467999999999999999999999999999999999999986 9999999999987765 38899999976
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
.+|+ -||.|||. |+ .++.+.+.+.+|+..++.++- ++.|++.+||.
T Consensus 420 eLF~-GTIaeNIa---Rf----------------------~~~~d~~kIieAA~lAgvHel--------Il~lP~GYdT~ 465 (580)
T COG4618 420 ELFD-GTIAENIA---RF----------------------GEEADPEKVIEAARLAGVHEL--------ILRLPQGYDTR 465 (580)
T ss_pred eecC-CcHHHHHH---hc----------------------cccCCHHHHHHHHHHcChHHH--------HHhCcCCccCc
Confidence 6665 49999994 21 234566777888887775442 67899999999
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
||+ ...+||||||||+++||||.++|.+++||||-|+||+..+..+.+.|.++.+ .|+|+|++.|.| .+...+|+|
T Consensus 466 iG~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHRP--s~L~~~Dki 541 (580)
T COG4618 466 IGE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHRP--SALASVDKI 541 (580)
T ss_pred cCC-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecCH--HHHhhccee
Confidence 996 4667999999999999999999999999999999999999999999999876 588888887766 588899999
Q ss_pred EEEcCCeEEEecChhhHHHHHH
Q 003389 415 ILLSEGQIVYQGPRDNVLEFFE 436 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~~~f~ 436 (824)
++|++|++-.+|++++++....
T Consensus 542 lvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 542 LVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred eeecCChHHhcCCHHHHHHHhc
Confidence 9999999999999999987553
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=337.55 Aligned_cols=205 Identities=20% Similarity=0.309 Sum_probs=167.3
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC----C----CCCceEEEEecCCC-
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----F----VPQRTCAYISQHDL- 255 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~----~----~~~~~i~yv~Q~d~- 255 (824)
.+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. . ..++.++|++|++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 5999999999999999999999999999999999999886 9999999988642 1 12357999999863
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~ 334 (824)
.+...||+||+.|.....+.. ..+ ....++.+++.++|+ +..++.
T Consensus 102 ~~~~~tv~enl~~~~~~~~~~----------~~~------------------------~~~~~~~ll~~~~L~~~~~~~~ 147 (289)
T PRK13645 102 QLFQETIEKDIAFGPVNLGEN----------KQE------------------------AYKKVPELLKLVQLPEDYVKRS 147 (289)
T ss_pred hhhhhHHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCCChhHhcCC
Confidence 233469999998864321110 000 011245678899994 566666
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..++|+|++.|++ +++.++||++
T Consensus 148 ~~-----~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i 221 (289)
T PRK13645 148 PF-----ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEV 221 (289)
T ss_pred hh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEE
Confidence 54 59999999999999999999999999999999999999999999999865578888877654 4778899999
Q ss_pred EEEcCCeEEEecChhhHH
Q 003389 415 ILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (824)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 222 IVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=328.01 Aligned_cols=213 Identities=24% Similarity=0.286 Sum_probs=169.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l--~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~ 257 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|++ +|+ +|+|.++|+++..... +..++|++|++.++
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 46999999999999999999999999999999999995 565 9999999998754322 23489999999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccccc
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 336 (824)
+.+||+|++.+......... .. ...+.. +....++.+++.+||+ ...++.++
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~----------~~------~~~~~~-----------~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSAR----------GE------EPLDLL-----------DFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CCcCHHHHHHHHHHHhhccc----------cc------ccccHH-----------HHHHHHHHHHHHcCCchhhcccccc
Confidence 99999999988643211000 00 000000 0012356788999997 45565553
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh-cCeEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-FDDII 415 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l-fD~ii 415 (824)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++... ||+++
T Consensus 143 ----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~-~~~~~~~~d~i~ 216 (243)
T TIGR01978 143 ----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQ-RLLNYIKPDYVH 216 (243)
T ss_pred ----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecH-HHHHhhcCCeEE
Confidence 14999999999999999999999999999999999999999999999975 578888887765 466677 89999
Q ss_pred EEcCCeEEEecChhhHH
Q 003389 416 LLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (824)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 217 VLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEeCCEEEEecCHHHhc
Confidence 99999999999987554
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=326.86 Aligned_cols=204 Identities=27% Similarity=0.415 Sum_probs=173.2
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCHHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV~E 264 (824)
+|+|+|++|+|||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.+||.|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 899999999999999999999999999999999999987 9999999998765322 457999999999999999999
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
|+.+.....+... .+ ....+.++++.+||.+..++.+. .||
T Consensus 91 ~l~~~~~~~~~~~--------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS 131 (235)
T cd03299 91 NIAYGLKKRKVDK--------------------KE--------------IERKVLEIAEMLGIDHLLNRKPE-----TLS 131 (235)
T ss_pred HHHHHHHHcCCCH--------------------HH--------------HHHHHHHHHHHcCChhHHhcCcc-----cCC
Confidence 9987643221100 00 01124567889999887887765 499
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEE
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~ 424 (824)
|||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|+++|++ +++.++||++++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999765588999988765 46788999999999999999
Q ss_pred ecChhhHH
Q 003389 425 QGPRDNVL 432 (824)
Q Consensus 425 ~G~~~~~~ 432 (824)
.|+.+++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99987664
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=330.43 Aligned_cols=204 Identities=25% Similarity=0.328 Sum_probs=169.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC------C---CCCceEEEEecCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE------F---VPQRTCAYISQHD 254 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~------~---~~~~~i~yv~Q~d 254 (824)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. . ..++.++|++|++
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQY 91 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCc
Confidence 46999999999999999999999999999999999999887 9999999987631 0 1135699999999
Q ss_pred CCCCCCCHHHHHHHhh-hhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 255 LHHGEMTVRETLDFSG-RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a-~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
.+++.+||.||+.+.. ...+.. .. + ....+..+++.+||++..++
T Consensus 92 ~~~~~~tv~e~i~~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~gl~~~~~~ 137 (242)
T PRK11124 92 NLWPHLTVQQNLIEAPCRVLGLS----------KD----------Q--------------ALARAEKLLERLRLKPYADR 137 (242)
T ss_pred cccCCCcHHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCChhhhhC
Confidence 9999999999997532 111110 00 0 01134668889999877777
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.++ .|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ .+.|+|++.|++. ++.++||+
T Consensus 138 ~~~-----~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~~~~~d~ 210 (242)
T PRK11124 138 FPL-----HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVE-VARKTASR 210 (242)
T ss_pred Chh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhcCE
Confidence 665 5999999999999999999999999999999999999999999999875 4788888776654 67788999
Q ss_pred EEEEcCCeEEEecChhhH
Q 003389 414 IILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~ 431 (824)
+++|.+|++++.|+.+++
T Consensus 211 i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 211 VVYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEEECCEEEEeCCHHHh
Confidence 999999999999987754
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=331.03 Aligned_cols=209 Identities=21% Similarity=0.336 Sum_probs=167.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCC--C---CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNE--F---VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~--~---~~~~~i~yv~Q~d~~ 256 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|+++|+ ...+|+|+++|+++.. . ..++.++|++|++.+
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNP 96 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCcc
Confidence 46999999999999999999999999999999999998762 1248999999998752 1 123579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc----ccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (824)
++.+||.||+.++...++... +..+ ....++++++.+||.. ..+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~------------------~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 144 (253)
T PRK14267 97 FPHLTIYDNVAIGVKLNGLVK------------------SKKE--------------LDERVEWALKKAALWDEVKDRLN 144 (253)
T ss_pred CCCCcHHHHHHHHHHhcCccC------------------CHHH--------------HHHHHHHHHHHcCCccchhhhhc
Confidence 999999999988643221100 0000 0012456778888743 234
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+. ++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++.|++ .++.++||
T Consensus 145 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d 216 (253)
T PRK14267 145 DY-----PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSP-AQAARVSD 216 (253)
T ss_pred cC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCH-HHHHhhCC
Confidence 33 446999999999999999999999999999999999999999999999964 57888887664 46788999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
+|++|++|++++.|+++++.
T Consensus 217 ~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 217 YVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=328.83 Aligned_cols=209 Identities=23% Similarity=0.314 Sum_probs=168.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCCC---CCceEEEEecCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEFV---PQRTCAYISQHDLHHG 258 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~ 258 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|. ...+|+|.++|+++.... .++.++|++|++.+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 46999999999999999999999999999999999998741 124999999999875432 2467999999988899
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc----ccccc
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CADTM 334 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~dt~ 334 (824)
.+||.||+.+.....+... +..+ ....+.++++.+||.+ ..++.
T Consensus 96 ~~tv~enl~~~~~~~~~~~------------------~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~~ 143 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVK------------------SKKE--------------LQERVRWALEKAQLWDEVKDRLDAP 143 (250)
T ss_pred CCcHHHHHHHHHHhccccC------------------CHHH--------------HHHHHHHHHHHcCCCcchhhhhcCC
Confidence 9999999988643221100 0000 0113456788889854 34444
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|+++|++ .++.++||++
T Consensus 144 ~-----~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d~i 215 (250)
T PRK14247 144 A-----GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--DMTIVLVTHFP-QQAARISDYV 215 (250)
T ss_pred c-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcCEE
Confidence 4 46999999999999999999999999999999999999999999999863 67888877665 4677899999
Q ss_pred EEEcCCeEEEecChhhHH
Q 003389 415 ILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (824)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 216 AFLYKGQIVEWGPTREVF 233 (250)
T ss_pred EEEECCeEEEECCHHHHH
Confidence 999999999999988763
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=365.61 Aligned_cols=256 Identities=24% Similarity=0.374 Sum_probs=195.5
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.++.+...+|+.++++.+++.. . .....+...-.++++|+++..+.
T Consensus 297 ~~~~~~~~~ri~~~l~~~~~~~-----~--~~~~~~~~~~~i~~~~v~f~y~~--------------------------- 342 (571)
T TIGR02203 297 MQRGLAAAESLFTLLDSPPEKD-----T--GTRAIERARGDVEFRNVTFRYPG--------------------------- 342 (571)
T ss_pred HHHHHHHHHHHHHHHcCCCCCC-----C--CCCCCCCCCCeEEEEEEEEEcCC---------------------------
Confidence 4556677777777776544410 0 00011111235888888875311
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
.++++|+|+|++|++|+.++|+|+||||||||+++|+|+++|+ +|+|.+||.++++... ++.++|++|+
T Consensus 343 -----~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~ 414 (571)
T TIGR02203 343 -----RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQD 414 (571)
T ss_pred -----CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccC
Confidence 1246999999999999999999999999999999999999997 9999999998876543 4679999998
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.++. .|++|||.++.. ++.+.+++.+++...+. ++.+ -.|++..||
T Consensus 415 ~~lf~-~Ti~~Ni~~~~~------------------------~~~~~~~i~~~l~~~~l------~~~i--~~lp~gldt 461 (571)
T TIGR02203 415 VVLFN-DTIANNIAYGRT------------------------EQADRAEIERALAAAYA------QDFV--DKLPLGLDT 461 (571)
T ss_pred ccccc-ccHHHHHhcCCC------------------------CCCCHHHHHHHHHHcCh------HHHH--HhCcCcccc
Confidence 87665 599999987520 01222333333332221 1122 246677899
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+|+. .+.||||||||++|||+++.+|++++|||||++||..++..|.+.|+++.+ ++|+|+++|++ +..+.||+
T Consensus 462 ~i~~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~--~~tiIiitH~~--~~~~~~D~ 536 (571)
T TIGR02203 462 PIGEN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRL--STIEKADR 536 (571)
T ss_pred eecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC--CCEEEEEehhh--HHHHhCCE
Confidence 99975 567999999999999999999999999999999999999999999999853 78999988886 56788999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 003389 414 IILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (824)
|++|++|+++..|+++++.
T Consensus 537 ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 537 IVVMDDGRIVERGTHNELL 555 (571)
T ss_pred EEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999875
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=335.20 Aligned_cols=209 Identities=22% Similarity=0.341 Sum_probs=171.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|+..+++.+
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCc
Confidence 46999999999999999999999999999999999999887 999999998875322 135699999998888899
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||.||+.+...... .. . . ..... ....++.+++.+||++..++.+++
T Consensus 101 tv~e~l~~~~~~~~-~~-------~-------~-~~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~--- 147 (265)
T PRK10575 101 TVRELVAIGRYPWH-GA-------L-------G-RFGAA--------------DREKVEEAISLVGLKPLAHRLVDS--- 147 (265)
T ss_pred cHHHHHHhCccccc-cc-------c-------c-CCCHH--------------HHHHHHHHHHHcCCHHHhcCCccc---
Confidence 99999987532100 00 0 0 00000 011346688899998777777664
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++.|++ +++.++||++++|++|
T Consensus 148 --LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G 224 (265)
T PRK10575 148 --LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGG 224 (265)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999765578888887664 4788899999999999
Q ss_pred eEEEecChhhH
Q 003389 421 QIVYQGPRDNV 431 (824)
Q Consensus 421 ~iv~~G~~~~~ 431 (824)
++++.|+.+++
T Consensus 225 ~i~~~~~~~~~ 235 (265)
T PRK10575 225 EMIAQGTPAEL 235 (265)
T ss_pred eEEEecCHHHh
Confidence 99999988765
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=333.65 Aligned_cols=206 Identities=22% Similarity=0.257 Sum_probs=169.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCC--CCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL--HHG 258 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~--~~~ 258 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|+++|. +|+|.++|.++..... ++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999987 9999999988753211 246999999864 567
Q ss_pred CCCHHHHHHHhhhhcC-CchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccccc
Q 003389 259 EMTVRETLDFSGRCLG-VGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~-~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 336 (824)
.+||.+++.+..+... .. .. + ....++.+++.+||. ...++.+.
T Consensus 103 ~~tv~~~l~~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~ 148 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLE----------PE----------Q--------------REKQIIETLRQVGLLPDHASYYPH 148 (267)
T ss_pred chhHHHHHHHHHHhccCCC----------HH----------H--------------HHHHHHHHHHHcCCChHHHhcCch
Confidence 8899999987643221 00 00 0 011346688999994 55665554
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++..+.|+|++.|++ .++.++||++++
T Consensus 149 -----~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~ 222 (267)
T PRK15112 149 -----MLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLV 222 (267)
T ss_pred -----hcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEE
Confidence 59999999999999999999999999999999999999999999999865578888877665 578889999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|++++.|+.+++.
T Consensus 223 l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 223 MHQGEVVERGSTADVL 238 (267)
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999887764
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=333.82 Aligned_cols=216 Identities=24% Similarity=0.297 Sum_probs=172.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--------CCceEEEEecCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--------PQRTCAYISQHDL 255 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--------~~~~i~yv~Q~d~ 255 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|+...+|+|+++|+++.... .++.++|++|++.
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 46999999999999999999999999999999999999875223699999998874321 1356899999998
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (824)
+++.+||+||+.+....... . ..+.. .. ... +....++++++.+||++..|+.+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~-----~----~~~~~--~~-~~~--------------~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 97 LVNRLSVLENVLIGALGSTP-----F----WRTCF--SW-FTR--------------EQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccCCcHHHHHHhhhccccc-----c----hhhhc--cc-ccH--------------HHHHHHHHHHHHcCCHHHHhCCc
Confidence 89999999999875321000 0 00000 00 000 01123567889999988777776
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
+ .|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|+++|++ .++.++||+++
T Consensus 151 ~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~ 224 (262)
T PRK09984 151 S-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIV 224 (262)
T ss_pred c-----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 6 49999999999999999999999999999999999999999999999865578888887665 46788999999
Q ss_pred EEcCCeEEEecChhhH
Q 003389 416 LLSEGQIVYQGPRDNV 431 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~ 431 (824)
+|++|++++.|+++++
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999998753
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=334.12 Aligned_cols=210 Identities=22% Similarity=0.351 Sum_probs=172.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC
Confidence 46999999999999999999999999999999999999887 9999999998754321 35699999999888899
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.+....... .. . ... + .....++++++.+||++..++.+.
T Consensus 97 tv~~~~~~~~~~~~~-----~~---~--------~~~-~-------------~~~~~~~~~l~~~~l~~~~~~~~~---- 142 (265)
T PRK10253 97 TVQELVARGRYPHQP-----LF---T--------RWR-K-------------EDEEAVTKAMQATGITHLADQSVD---- 142 (265)
T ss_pred cHHHHHHhCcccccc-----cc---c--------CCC-H-------------HHHHHHHHHHHHcCCHHHhcCCcc----
Confidence 999999875311000 00 0 000 0 001134668889999877776665
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++|++|
T Consensus 143 -~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G 220 (265)
T PRK10253 143 -TLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREG 220 (265)
T ss_pred -cCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 59999999999999999999999999999999999999999999999864578888887665 4788999999999999
Q ss_pred eEEEecChhhHH
Q 003389 421 QIVYQGPRDNVL 432 (824)
Q Consensus 421 ~iv~~G~~~~~~ 432 (824)
++++.|+++++.
T Consensus 221 ~i~~~g~~~~~~ 232 (265)
T PRK10253 221 KIVAQGAPKEIV 232 (265)
T ss_pred EEEEeCCHHHHh
Confidence 999999987764
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=321.10 Aligned_cols=199 Identities=22% Similarity=0.283 Sum_probs=166.4
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-CCceEEEEecCCCCCCCCCHHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-~~~~i~yv~Q~d~~~~~lTV~E 264 (824)
+++|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|+.|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 467999999999999999999999999999999999987 999999999875422 2467999999999999999999
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
|+.+...... . ... +....++++++.+||++..++.+. .||
T Consensus 90 n~~~~~~~~~-~-------------------~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 130 (213)
T TIGR01277 90 NIGLGLHPGL-K-------------------LNA--------------EQQEKVVDAAQQVGIADYLDRLPE-----QLS 130 (213)
T ss_pred HHHhHhhccC-C-------------------ccH--------------HHHHHHHHHHHHcCcHHHhhCCcc-----cCC
Confidence 9987532100 0 000 001134568899999877777665 599
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEE
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~ 424 (824)
||||||++||++|+.+|++++|||||+|||..++..+.+.|+++.+..+.|+|++.|++ .++.++||++++|++|+++.
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999999865578888877654 47778999999999999998
Q ss_pred ecC
Q 003389 425 QGP 427 (824)
Q Consensus 425 ~G~ 427 (824)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=329.66 Aligned_cols=210 Identities=22% Similarity=0.316 Sum_probs=164.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+.+ +....+|+|.++|+++... ..++.++|++|++.+
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 98 (253)
T PRK14242 19 FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNP 98 (253)
T ss_pred eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCC
Confidence 359999999999999999999999999999999999864 1112399999999887531 114579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++ .||+||+.+.....+.... .+ ....++.+++.+||.+...+..
T Consensus 99 ~~-~tv~enl~~~~~~~~~~~~-------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~- 143 (253)
T PRK14242 99 FP-KSIFENVAYGLRVNGVKDK-------------------AY--------------LAERVERSLRHAALWDEVKDRL- 143 (253)
T ss_pred Cc-CcHHHHHHHHHHHcCCCCH-------------------HH--------------HHHHHHHHHHHcCCchhhhHHh-
Confidence 77 5999999886433221000 00 0112455777888854221111
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.++||++++
T Consensus 144 ~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~tH~~-~~~~~~~d~v~~ 220 (253)
T PRK14242 144 HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA--RYTIIIVTHNM-QQAARVSDVTAF 220 (253)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCeEEEEEecH-HHHHHhCCEEEE
Confidence 123456999999999999999999999999999999999999999999999953 67888877654 477889999999
Q ss_pred EcCCeEEEecChhhH
Q 003389 417 LSEGQIVYQGPRDNV 431 (824)
Q Consensus 417 L~~G~iv~~G~~~~~ 431 (824)
|++|+++..|+++++
T Consensus 221 l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 221 FYMGKLIEVGPTEQI 235 (253)
T ss_pred EECCEEEEeCCHHHH
Confidence 999999999998776
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=372.42 Aligned_cols=257 Identities=23% Similarity=0.370 Sum_probs=198.9
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.++....++|+.++++.++|... . +....+.....++++|+++.+.
T Consensus 421 ~~~~~~~~~ri~~~l~~~~e~~~----~--~~~~~~~~~~~i~~~~vsf~y~---------------------------- 466 (694)
T TIGR01846 421 FQQTGIALERLGDILNSPTEPRS----A--GLAALPELRGAITFENIRFRYA---------------------------- 466 (694)
T ss_pred HHHHHHHHHHHHHHHcCCCCccC----C--CCCCCCCCCCeEEEEEEEEEcC----------------------------
Confidence 45677778888888876655210 0 0011111134688888887531
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
...+.+|+|+|++|+||+.++|+|+||||||||+|+|+|+++|+ +|+|++||+++++... ++.++||+|+
T Consensus 467 ----~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~ 539 (694)
T TIGR01846 467 ----PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQE 539 (694)
T ss_pred ----CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccC
Confidence 11245999999999999999999999999999999999999997 9999999999876543 4679999998
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+++ .|++|||.++. |+.+.+++.+++...+. ++.++ .|+...||
T Consensus 540 ~~lf~-~ti~eNi~~~~-------------------------~~~~~~~i~~a~~~~~l------~~~i~--~lp~gl~t 585 (694)
T TIGR01846 540 NVLFS-RSIRDNIALCN-------------------------PGAPFEHVIHAAKLAGA------HDFIS--ELPQGYNT 585 (694)
T ss_pred Ceehh-hhHHHHHhcCC-------------------------CCCCHHHHHHHHHHcCh------HHHHH--hCcCccCc
Confidence 77775 59999998742 12222334444433322 22222 45677899
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+|+. ...||||||||++|||||+.+|++|+|||||++||+.++..+.+.|+++. .++|+|++.|++. +.+.||+
T Consensus 586 ~i~~~-g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~--~~~~~d~ 660 (694)
T TIGR01846 586 EVGEK-GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLS--TVRACDR 660 (694)
T ss_pred EecCC-CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChH--HHHhCCE
Confidence 99864 56799999999999999999999999999999999999999999999985 3789999888764 5577999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|+++++|+++++.+
T Consensus 661 ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 661 IIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred EEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999998764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=395.06 Aligned_cols=212 Identities=26% Similarity=0.388 Sum_probs=177.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC---------------------------------------
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--------------------------------------- 224 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--------------------------------------- 224 (824)
.+||+|+|++|+||+.+||+||||||||||+++|.|+++|.
T Consensus 1181 ~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 (1466)
T PTZ00265 1181 VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260 (1466)
T ss_pred CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999999982
Q ss_pred ------------CCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHH
Q 003389 225 ------------LRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRRE 289 (824)
Q Consensus 225 ------------~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e 289 (824)
.+.+|+|++||+++.+... ++.++||+|++.+| ..||+|||.|+.
T Consensus 1261 ~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~------------------- 1320 (1466)
T PTZ00265 1261 TKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGK------------------- 1320 (1466)
T ss_pred ccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCC-------------------
Confidence 0149999999999877643 57899999998777 469999999862
Q ss_pred HhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCC
Q 003389 290 KQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEI 369 (824)
Q Consensus 290 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEP 369 (824)
|+.+.+++.+|+..++.+.. +..|++.+||.||+ ....||||||||++|||||+++|+||+||||
T Consensus 1321 ------~~at~eeI~~A~k~A~l~~f--------I~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEa 1385 (1466)
T PTZ00265 1321 ------EDATREDVKRACKFAAIDEF--------IESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEA 1385 (1466)
T ss_pred ------CCCCHHHHHHHHHHcCCHHH--------HHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 22233445555555543332 34688999999995 4556999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC----CeEE-EecChhhHH
Q 003389 370 STGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE----GQIV-YQGPRDNVL 432 (824)
Q Consensus 370 TsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~----G~iv-~~G~~~~~~ 432 (824)
||+||+.++..|.+.|+++....++|+|++.|++ ++.+.||+|++|++ |+++ ++|++++++
T Consensus 1386 TSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1386 TSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI--ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred ccccCHHHHHHHHHHHHHHhccCCCEEEEEechH--HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 9999999999999999998532478999988876 57788999999999 9955 899999986
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=364.01 Aligned_cols=208 Identities=24% Similarity=0.370 Sum_probs=171.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++++||+.++|+|+||||||||+|+|+|+++|+ +|+|.+||+++++... ++.++||+|++.+++ .
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 423 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFN-R 423 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHHHHHhheEEEecCccccc-c
Confidence 35999999999999999999999999999999999999997 9999999999876543 478999999987775 5
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
|++||+.++. |+.+.+++.+++...+. ++.++ .++...||.+|+. .
T Consensus 424 Ti~~Ni~~~~-------------------------~~~~d~~i~~al~~~~l------~~~i~--~lp~gldt~i~~~-g 469 (588)
T PRK13657 424 SIEDNIRVGR-------------------------PDATDEEMRAAAERAQA------HDFIE--RKPDGYDTVVGER-G 469 (588)
T ss_pred cHHHHHhcCC-------------------------CCCCHHHHHHHHHHhCH------HHHHH--hCcccccchhcCC-C
Confidence 9999998752 11112222222222221 11222 3567789999864 5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
+.||||||||++|||+|+.+|++|+||||||+||+.++..|.+.|+++.+ ++|+|++.|++ +..+.||+|++|++|
T Consensus 470 ~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~--~~tvIiitHr~--~~~~~~D~ii~l~~G 545 (588)
T PRK13657 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK--GRTTFIIAHRL--STVRNADRILVFDNG 545 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEEecH--HHHHhCCEEEEEECC
Confidence 66999999999999999999999999999999999999999999998753 78999988886 467889999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
+++..|+++++.+
T Consensus 546 ~i~~~g~~~~l~~ 558 (588)
T PRK13657 546 RVVESGSFDELVA 558 (588)
T ss_pred EEEEeCCHHHHHH
Confidence 9999999988753
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=332.31 Aligned_cols=208 Identities=25% Similarity=0.385 Sum_probs=171.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|+..+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 46999999999999999999999999999999999999886 999999998765432 235699999998888889
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||.||+.++..... ..... .+ . .....++++++.+||++..++.++
T Consensus 92 tv~~~i~~~~~~~~-----~~~~~----------~~-~--------------~~~~~~~~~l~~~~l~~~~~~~~~---- 137 (255)
T PRK11231 92 TVRELVAYGRSPWL-----SLWGR----------LS-A--------------EDNARVNQAMEQTRINHLADRRLT---- 137 (255)
T ss_pred cHHHHHHhccchhh-----hhccC----------CC-H--------------HHHHHHHHHHHHcCCHHHHcCCcc----
Confidence 99999988531100 00000 00 0 001234668889999877777765
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .++|+|+++|++ .++.++||++++|++|
T Consensus 138 -~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~-~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 138 -DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDL-NQASRYCDHLVVLANG 214 (255)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCH-HHHHHhcCEEEEEECC
Confidence 4999999999999999999999999999999999999999999999875 478888887665 4788999999999999
Q ss_pred eEEEecChhhH
Q 003389 421 QIVYQGPRDNV 431 (824)
Q Consensus 421 ~iv~~G~~~~~ 431 (824)
+++..|+.+++
T Consensus 215 ~i~~~~~~~~~ 225 (255)
T PRK11231 215 HVMAQGTPEEV 225 (255)
T ss_pred eEEEEcCHHHh
Confidence 99999988765
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=323.31 Aligned_cols=195 Identities=25% Similarity=0.358 Sum_probs=162.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-----CCCceEEEEecCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLHHG 258 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~~~ 258 (824)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|++.+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 46999999999999999999999999999999999999887 99999999987421 12467999999998999
Q ss_pred CCCHHHHHHHhhh-hcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 259 EMTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 259 ~lTV~E~L~f~a~-~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
.+||+||+.+... .++.. .. +....++.+++.+||++..++.+.
T Consensus 90 ~~t~~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 134 (213)
T cd03262 90 HLTVLENITLAPIKVKGMS----------KA------------------------EAEERALELLEKVGLADKADAYPA- 134 (213)
T ss_pred CCcHHHHHHhHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCHhHhhhCcc-
Confidence 9999999988632 11100 00 001124567889999877777665
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .++|+|++.|+ ..++.++||++++|
T Consensus 135 ----~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~-~~~~~~~~d~i~~l 208 (213)
T cd03262 135 ----QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHE-MGFAREVADRVIFM 208 (213)
T ss_pred ----ccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC-HHHHHHhCCEEEEE
Confidence 5999999999999999999999999999999999999999999999986 47888887665 45778899999999
Q ss_pred cCCeE
Q 003389 418 SEGQI 422 (824)
Q Consensus 418 ~~G~i 422 (824)
++|++
T Consensus 209 ~~g~i 213 (213)
T cd03262 209 DDGRI 213 (213)
T ss_pred eCCcC
Confidence 99974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=360.29 Aligned_cols=255 Identities=21% Similarity=0.349 Sum_probs=195.3
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.++.....+|+.++++.+++.. + ....+.+...++++|+++.++.
T Consensus 284 ~~~~~~~~~ri~~~l~~~~~~~-----~---~~~~~~~~~~i~~~~v~~~y~~--------------------------- 328 (544)
T TIGR01842 284 FSGARQAYKRLNELLANYPSRD-----P---AMPLPEPEGHLSVENVTIVPPG--------------------------- 328 (544)
T ss_pred HHHHHHHHHHHHHHHhCCcccc-----C---CCCCCCCCCeEEEEEEEEEcCC---------------------------
Confidence 3566777888888876654421 0 0111222345888888875310
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
+++++|+|+|++++||+.++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 329 -----~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 400 (544)
T TIGR01842 329 -----GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQD 400 (544)
T ss_pred -----CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCC
Confidence 1246899999999999999999999999999999999999997 9999999998876432 4689999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+++. |++||+.+... +.+.+++.+++...+ .++.++ .|++..||
T Consensus 401 ~~lf~~-ti~~Ni~~~~~-------------------------~~~~~~~~~~~~~~~------~~~~i~--~l~~gl~t 446 (544)
T TIGR01842 401 VELFPG-TVAENIARFGE-------------------------NADPEKIIEAAKLAG------VHELIL--RLPDGYDT 446 (544)
T ss_pred cccccc-cHHHHHhccCC-------------------------CCCHHHHHHHHHHhC------hHHHHH--hCcccccc
Confidence 888875 99999975321 111122222222221 223344 34566788
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+|+ ....||||||||++|||||+++|++|+|||||+|||+.++.++.+.|+++.. .++|+|++.|++. ..+.||+
T Consensus 447 ~~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~--~~~~~d~ 522 (544)
T TIGR01842 447 VIGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPS--LLGCVDK 522 (544)
T ss_pred ccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHH--HHHhCCE
Confidence 8885 4667999999999999999999999999999999999999999999999863 4789999888874 5678999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 003389 414 IILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (824)
|++|++|++++.|+++++.
T Consensus 523 i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 523 ILVLQDGRIARFGERDEVL 541 (544)
T ss_pred EEEEECCEEEeeCCHHHHh
Confidence 9999999999999998774
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=310.24 Aligned_cols=208 Identities=29% Similarity=0.444 Sum_probs=173.5
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~ 259 (824)
++.+|++||++++||||++|+||||||||||||+|+|.+.|+ +|++.+||.+++.+.+ .+.-+.++|+..+-+.
T Consensus 13 Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFp 89 (259)
T COG4559 13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP 89 (259)
T ss_pred cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccc
Confidence 456999999999999999999999999999999999999997 9999999999987765 3667999999887777
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
.||+|-+.++..-.+.+.. |. ++..+++.+|...++.+.+..-
T Consensus 90 Ftv~eVV~mGr~p~~~g~~-----------------~~---------------e~~~i~~~ala~~d~~~la~R~----- 132 (259)
T COG4559 90 FTVQEVVQMGRIPHRSGRE-----------------PE---------------EDERIAAQALAATDLSGLAGRD----- 132 (259)
T ss_pred eEHHHHHHhcccccccCCC-----------------ch---------------hhHHHHHHHHHHcChhhhhccc-----
Confidence 7999999998654432210 00 1122456677788887776544
Q ss_pred CCCCCHHHHHHHHHHHHHHc------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 340 RRGISGGQKKRVTTGEMLVG------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~------~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+.|||||||||.+||.|+. ++++||||||||.||...+..+++..|+++++ |..|+++ +|+...+..+||+
T Consensus 133 y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~V-LHDLNLAA~YaDr 210 (259)
T COG4559 133 YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAV-LHDLNLAAQYADR 210 (259)
T ss_pred hhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEE-EccchHHHHhhhe
Confidence 35699999999999999975 44699999999999999999999999999985 6566554 5677788999999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 003389 414 IILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (824)
|++|++||++..|++++++
T Consensus 211 ivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 211 IVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred eeeeeCCeEeecCCHHHhc
Confidence 9999999999999998875
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=325.64 Aligned_cols=206 Identities=27% Similarity=0.407 Sum_probs=174.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV 262 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.+|+
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcH
Confidence 46999999999999999999999999999999999999886 9999999998764332 3679999999988999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
.||+.+....++... . . ....++++++.+++....++.++ .
T Consensus 90 ~enl~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (237)
T TIGR00968 90 RDNIAFGLEIRKHPK----------A----------K--------------IKARVEELLELVQLEGLGDRYPN-----Q 130 (237)
T ss_pred HHHHHhHHHhcCCCH----------H----------H--------------HHHHHHHHHHHcCCHhHhhCChh-----h
Confidence 999987643321100 0 0 00124568889999877777665 4
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||+||++||++|+.+|++++|||||+|||..+...+.+.|+++++..++|+|+++|++. ++.++||++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKI 209 (237)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987644789999887764 67889999999999999
Q ss_pred EEecChhhHH
Q 003389 423 VYQGPRDNVL 432 (824)
Q Consensus 423 v~~G~~~~~~ 432 (824)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (237)
T TIGR00968 210 EQIGSPDEVY 219 (237)
T ss_pred EEecCHHHHH
Confidence 9999988764
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=327.83 Aligned_cols=207 Identities=23% Similarity=0.277 Sum_probs=167.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC-CCcceEeeCCcccCCCCC-CceEEEEecCCC--CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL-RASGKITYCGHELNEFVP-QRTCAYISQHDL--HHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~-~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~--~~~~ 259 (824)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|+++..... ++.++|++|++. +.+.
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~ 95 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPL 95 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcc
Confidence 358999999999999999999999999999999999998710 139999999998754322 357999999974 4466
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc---ccccccc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI---CADTMVG 336 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~---~~dt~vg 336 (824)
+|+.+++.+.+...+.. . ....+..+++.+||.+ ..++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~---------------------~---------------~~~~~~~~l~~~~l~~~~~~~~~~~- 138 (254)
T PRK10418 96 HTMHTHARETCLALGKP---------------------A---------------DDATLTAALEAVGLENAARVLKLYP- 138 (254)
T ss_pred ccHHHHHHHHHHHcCCC---------------------h---------------HHHHHHHHHHHcCCCChhhhhhcCC-
Confidence 89999886643221110 0 0012456888999975 345554
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++
T Consensus 139 ----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~ 213 (254)
T PRK10418 139 ----FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAV 213 (254)
T ss_pred ----cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEE
Confidence 459999999999999999999999999999999999999999999999875578888887664 467789999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|++++.|+.+++.
T Consensus 214 l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 214 MSHGRIVEQGDVETLF 229 (254)
T ss_pred EECCEEEEecCHHHHh
Confidence 9999999999988763
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=332.23 Aligned_cols=216 Identities=20% Similarity=0.286 Sum_probs=175.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCC-CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~-~~~~ 259 (824)
..+|+|||++|++||+++|+||||||||||+++|+|+++|. +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 35999999999999999999999999999999999999987 999999999875422 2467999999964 6777
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
.||.||+.+.....+.. +.+ ....++++++.+||.+..++.+.
T Consensus 97 ~tv~eni~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~--- 139 (277)
T PRK13642 97 ATVEDDVAFGMENQGIP----------REE------------------------MIKRVDEALLAVNMLDFKTREPA--- 139 (277)
T ss_pred CCHHHHHHhhHHHcCCC----------HHH------------------------HHHHHHHHHHHCCCHhHhhCCcc---
Confidence 89999998764322110 000 01135678889999877777655
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|+.. ++. .||++++|++
T Consensus 140 --~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~ 215 (277)
T PRK13642 140 --RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKA 215 (277)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEEC
Confidence 599999999999999999999999999999999999999999999998755889999877654 454 6999999999
Q ss_pred CeEEEecChhhHHH---HHHHcCCCCC
Q 003389 420 GQIVYQGPRDNVLE---FFEHMGFKCP 443 (824)
Q Consensus 420 G~iv~~G~~~~~~~---~f~~~G~~~p 443 (824)
|+++..|+++++.. .+...+..+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (277)
T PRK13642 216 GEIIKEAAPSELFATSEDMVEIGLDVP 242 (277)
T ss_pred CEEEEeCCHHHHhcCHHHHHHCCCCCC
Confidence 99999999887642 2334455544
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=329.95 Aligned_cols=208 Identities=27% Similarity=0.415 Sum_probs=171.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|+..+++.+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 46999999999999999999999999999999999999987 9999999998765322 34699999998778889
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.+...... ... . .+..+ ....+.++++.+||.+..++.++
T Consensus 91 tv~e~l~~~~~~~~---------~~~------~-~~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~---- 136 (256)
T TIGR03873 91 TVRDVVALGRIPHR---------SLW------A-GDSPH--------------DAAVVDRALARTELSHLADRDMS---- 136 (256)
T ss_pred CHHHHHHhcchhhh---------hhc------c-CCCHH--------------HHHHHHHHHHHcCcHhhhcCCcc----
Confidence 99999987521000 000 0 00000 01134568889999877777765
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+ .+.|+|++.|++. ++.++||+|++|++|
T Consensus 137 -~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 137 -TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDLN-LAASYCDHVVVLDGG 213 (256)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 4999999999999999999999999999999999999999999999975 4788888877654 778899999999999
Q ss_pred eEEEecChhhH
Q 003389 421 QIVYQGPRDNV 431 (824)
Q Consensus 421 ~iv~~G~~~~~ 431 (824)
+++..|+.+++
T Consensus 214 ~i~~~g~~~~~ 224 (256)
T TIGR03873 214 RVVAAGPPREV 224 (256)
T ss_pred CEEEecCHHHh
Confidence 99999998765
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=360.67 Aligned_cols=208 Identities=25% Similarity=0.372 Sum_probs=170.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
..+|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++|++|++.+++.
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~- 403 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD- 403 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-
Confidence 45999999999999999999999999999999999999997 9999999998876433 4679999999887764
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
|++||+.++.. +.+.+++.+++...+.+. ....|++..||.+|+. .
T Consensus 404 ti~~Ni~~~~~-------------------------~~~~~~~~~~~~~~~l~~--------~i~~lp~gl~t~~~~~-g 449 (569)
T PRK10789 404 TVANNIALGRP-------------------------DATQQEIEHVARLASVHD--------DILRLPQGYDTEVGER-G 449 (569)
T ss_pred cHHHHHhcCCC-------------------------CCCHHHHHHHHHHcCCHH--------HHHhCcCcccceecCC-C
Confidence 99999987521 111122222222221111 1335677889999864 5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. .++|+|++.|++ +..+.||+|++|++|
T Consensus 450 ~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~--~~~~~~d~i~~l~~G 525 (569)
T PRK10789 450 VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRL--SALTEASEILVMQHG 525 (569)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--hHHHcCCEEEEEeCC
Confidence 6799999999999999999999999999999999999999999999985 378999988887 456779999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
+++.+|+++++.+
T Consensus 526 ~i~~~g~~~~l~~ 538 (569)
T PRK10789 526 HIAQRGNHDQLAQ 538 (569)
T ss_pred EEEEecCHHHHHH
Confidence 9999999988753
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=326.34 Aligned_cols=211 Identities=20% Similarity=0.280 Sum_probs=166.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++ |....+|+|.++|+++... ..++.++|++|+..+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 469999999999999999999999999999999999986 3212489999999887431 124679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++.+||+||+.+..+..+... .. + ....++++++.+|+........
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~---------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~- 142 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVN---------RS----------E--------------ADEIVESSLKRVALWDEVKDRL- 142 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCC---------HH----------H--------------HHHHHHHHHHHcCCchhhhHHh-
Confidence 999999999987643211000 00 0 0112456778888854211111
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|+++|++ .++.++||++++
T Consensus 143 ~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~d~i~~ 219 (252)
T PRK14256 143 KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNM-QQAARVSDYTAF 219 (252)
T ss_pred hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCH-HHHHhhCCEEEE
Confidence 123446999999999999999999999999999999999999999999999975 57888877654 477889999999
Q ss_pred EcCCeEEEecChhhH
Q 003389 417 LSEGQIVYQGPRDNV 431 (824)
Q Consensus 417 L~~G~iv~~G~~~~~ 431 (824)
|++|+++..|+++++
T Consensus 220 l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 220 FYMGDLVECGETKKI 234 (252)
T ss_pred EECCEEEEeCCHHHH
Confidence 999999999998876
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=326.88 Aligned_cols=207 Identities=18% Similarity=0.319 Sum_probs=166.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCCC-----CCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEFV-----PQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~~-----~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|+.+|. .+.+|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 46999999999999999999999999999999999998751 124899999999875321 14569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc----ccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (824)
++ +||+||+.|.....+... ..+ ....++.+++.+||.. ..+
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~---------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~ 142 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGIKD---------KKE------------------------LDKIVEWALKKAALWDEVKDDLK 142 (251)
T ss_pred CC-CcHHHHHHhHHHhcCCCc---------HHH------------------------HHHHHHHHHHHcCCchhhhhHhh
Confidence 87 899999988643322100 000 0112345777887742 334
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+. .+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|+++|++ .++.++||
T Consensus 143 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~d 214 (251)
T PRK14270 143 KS-----ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNM-QQASRVSD 214 (251)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCH-HHHHHhcC
Confidence 43 446999999999999999999999999999999999999999999999875 47888877664 47788999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
++++|++|++++.|+.+++.
T Consensus 215 ~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 215 YTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEEEEECCeEEEeCCHHHHh
Confidence 99999999999999988763
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=329.20 Aligned_cols=207 Identities=23% Similarity=0.354 Sum_probs=167.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcc-----cCCCCC-------CceEEEEe
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE-----LNEFVP-------QRTCAYIS 251 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~-----~~~~~~-------~~~i~yv~ 251 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|++ +..... ++.++|++
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~ 95 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEe
Confidence 46999999999999999999999999999999999999987 9999999987 544321 24699999
Q ss_pred cCCC--CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc
Q 003389 252 QHDL--HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (824)
Q Consensus 252 Q~d~--~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (824)
|+.. +.+.+|+.||+.+.....+.. ...+ ....++++++.+|+.+
T Consensus 96 q~~~~~~~~~~~~~~~i~~~~~~~~~~-------------------~~~~--------------~~~~~~~~l~~~~l~~ 142 (258)
T PRK11701 96 QHPRDGLRMQVSAGGNIGERLMAVGAR-------------------HYGD--------------IRATAGDWLERVEIDA 142 (258)
T ss_pred eCcccccCccccHHHHHHHHHHHhccC-------------------cHHH--------------HHHHHHHHHHHcCCCh
Confidence 9963 567789999997643211100 0000 0112456888999963
Q ss_pred -cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHH
Q 003389 330 -CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (824)
Q Consensus 330 -~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~ 408 (824)
..++.++ .|||||||||+|||+|+.+|++|+|||||+|||+.+...+.+.|+++++..+.|+|++.|++ .++.
T Consensus 143 ~~~~~~~~-----~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~ 216 (258)
T PRK11701 143 ARIDDLPT-----TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVAR 216 (258)
T ss_pred hHHhCCCc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHH
Confidence 5565554 59999999999999999999999999999999999999999999998765578888876654 4677
Q ss_pred hhcCeEEEEcCCeEEEecChhhHH
Q 003389 409 DLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 409 ~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
+.||++++|++|++++.|+++++.
T Consensus 217 ~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 217 LLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHh
Confidence 889999999999999999988763
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=326.16 Aligned_cols=211 Identities=21% Similarity=0.307 Sum_probs=164.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|+.+ |+...+|+|.++|+++... ..++.++|++|+..+
T Consensus 18 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (252)
T PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNP 97 (252)
T ss_pred eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCcc
Confidence 459999999999999999999999999999999999854 4222489999999987421 124579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++ +||+||+.+.....+... ... ....+.++++.+++.....+..
T Consensus 98 ~~-~tv~enl~~~~~~~~~~~-------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~- 142 (252)
T PRK14239 98 FP-MSIYENVVYGLRLKGIKD-------------------KQV--------------LDEAVEKSLKGASIWDEVKDRL- 142 (252)
T ss_pred Cc-CcHHHHHHHHHHHcCCCc-------------------HHH--------------HHHHHHHHHHHcCCchhHHHHH-
Confidence 77 899999988643222100 000 0112345677777743211111
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|+++|++ +++.++||++++
T Consensus 143 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~ 219 (252)
T PRK14239 143 HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSM-QQASRISDRTGF 219 (252)
T ss_pred hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCH-HHHHHhCCEEEE
Confidence 123456999999999999999999999999999999999999999999999864 57888877654 478889999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|++++.|+.+++.
T Consensus 220 l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 220 FLDGDLIEYNDTKQMF 235 (252)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988763
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=324.34 Aligned_cols=211 Identities=20% Similarity=0.286 Sum_probs=167.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+++|+|||++|++||+++|+|||||||||||++|+|+++|. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 46999999999999999999999999999999999998641 12499999999987531 124579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++ .||+||+.++....+... + .+ ....+.++++.++|.+..+...
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~---------~----------~~--------------~~~~~~~~l~~~~l~~~i~~~~- 157 (267)
T PRK14237 113 FA-KSIYENITFALERAGVKD---------K----------KV--------------LDEIVETSLKQAALWDQVKDDL- 157 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCCC---------H----------HH--------------HHHHHHHHHHHcCCCchhhhhh-
Confidence 77 599999988643221100 0 00 0112455778888854322222
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+..++.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ +.|+|+++|++. ++.++||++++
T Consensus 158 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~-~~~~~~d~i~~ 234 (267)
T PRK14237 158 HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK--NYTIIIVTHNMQ-QAARASDYTAF 234 (267)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH-HHHHhcCEEEE
Confidence 234557999999999999999999999999999999999999999999999953 678888776654 78899999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|++++.|+++++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 235 FYLGDLIEYDKTRNIF 250 (267)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988763
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=326.46 Aligned_cols=206 Identities=20% Similarity=0.309 Sum_probs=164.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
.++|+|+|++|++|++++|+||||||||||+++|+|+++ |....+|+|.++|+++... ..++.++|++|+..+
T Consensus 26 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 105 (260)
T PRK10744 26 FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTP 105 (260)
T ss_pred eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCcc
Confidence 359999999999999999999999999999999999986 2112489999999887421 124679999999887
Q ss_pred CCCCCHHHHHHHhhhhc-CCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc----cc
Q 003389 257 HGEMTVRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CA 331 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~-~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~ 331 (824)
++ +||+||+.+..... +.. .. + ....++++++.+||.. ..
T Consensus 106 ~~-~tv~~nl~~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~ 150 (260)
T PRK10744 106 FP-MSIYDNIAFGVRLFEKLS----------RA----------E--------------MDERVEWALTKAALWNEVKDKL 150 (260)
T ss_pred Cc-CcHHHHHhhhHhhcCCCC----------HH----------H--------------HHHHHHHHHHHcCCChhhHHHH
Confidence 77 89999998864322 110 00 0 0112456788888742 33
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf 411 (824)
++. ...|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|+++|++ .++.++|
T Consensus 151 ~~~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~-~~~~~~~ 222 (260)
T PRK10744 151 HQS-----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ--DYTVVIVTHNM-QQAARCS 222 (260)
T ss_pred hcC-----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhC
Confidence 443 346999999999999999999999999999999999999999999999953 67888877664 4677899
Q ss_pred CeEEEEcCCeEEEecChhhHH
Q 003389 412 DDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 412 D~iilL~~G~iv~~G~~~~~~ 432 (824)
|++++|++|+++..|+.+++.
T Consensus 223 d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 223 DYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred CEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999988763
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=340.08 Aligned_cols=215 Identities=17% Similarity=0.179 Sum_probs=169.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC-CCCcceEeeCCcccCCCCC-------CceEEEEecCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-LRASGKITYCGHELNEFVP-------QRTCAYISQHDL 255 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~-~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d~ 255 (824)
..+|+|||++|++||+++|+|+||||||||+++|+|++++. ...+|+|.|+|+++..... ++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 46999999999999999999999999999999999998742 1248999999998764322 246999999975
Q ss_pred --CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcc---
Q 003389 256 --HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC--- 330 (824)
Q Consensus 256 --~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~--- 330 (824)
+.+.+||.+++.+......... . .....+ +....+.++|+.+||.+.
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~------~---------~~~~~~-------------~~~~~~~~~L~~~gL~~~~~~ 151 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKG------R---------WWQRFG-------------WRKRRAIELLHRVGIKDHKDA 151 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhccc------c---------ccccHH-------------HHHHHHHHHHHHCCCCChHHH
Confidence 6788999999976422110000 0 000000 001235678999999753
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh
Q 003389 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (824)
Q Consensus 331 ~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l 410 (824)
.++. +..|||||||||+||+||+.+|++|++||||+|||+.++.++++.|+++.++.|.|+|+++| ....+.++
T Consensus 152 ~~~~-----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itH-dl~~v~~~ 225 (330)
T PRK15093 152 MRSF-----PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH-DLQMLSQW 225 (330)
T ss_pred HhCC-----chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEEC-CHHHHHHh
Confidence 3444 45699999999999999999999999999999999999999999999998766888888765 45678899
Q ss_pred cCeEEEEcCCeEEEecChhhHH
Q 003389 411 FDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 411 fD~iilL~~G~iv~~G~~~~~~ 432 (824)
||+|++|++|+|++.|+.+++.
T Consensus 226 ~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 226 ADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred CCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999988764
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=325.05 Aligned_cols=232 Identities=24% Similarity=0.319 Sum_probs=185.5
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-C-CCCCcceEeeCCcccCCCCC-------CceEEEEecC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG-K-DLRASGKITYCGHELNEFVP-------QRTCAYISQH 253 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~-~-~~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~ 253 (824)
...+++||||+|++||+++|+|.|||||||+.++|.|+++ + ....+|+|.|+|+++-.... .+.|+||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4569999999999999999999999999999999999997 4 33468999999997754332 2579999999
Q ss_pred C--CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc
Q 003389 254 D--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (824)
Q Consensus 254 d--~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (824)
+ .+.|.+||.+.+.-..+.+.... .+ .+....+.++|+.+||++-.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------~~------------------------~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------SK------------------------KEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------hh------------------------HHHHHHHHHHHHHcCCCCHH
Confidence 6 67899999988866544321100 00 01122456789999998632
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf 411 (824)
. +-+.++.+|||||||||.||.||+.+|++||.||||++||...+.+|++.|+++.++.|.++|+++ |+..-+.++|
T Consensus 145 ~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilIT-HDl~vva~~a 221 (316)
T COG0444 145 R--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILIT-HDLGVVAEIA 221 (316)
T ss_pred H--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhc
Confidence 2 234567789999999999999999999999999999999999999999999999987788877765 5666899999
Q ss_pred CeEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHhhc
Q 003389 412 DDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTS 457 (824)
Q Consensus 412 D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s 457 (824)
|||+||..|+||+.|+.+++ |+.|.+.-+...+..+..
T Consensus 222 Dri~VMYaG~iVE~g~~~~i--------~~~P~HPYT~~Ll~s~P~ 259 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEI--------FKNPKHPYTRGLLNSLPR 259 (316)
T ss_pred ceEEEEECcEEEEeCCHHHH--------hcCCCChHHHHHHHhCcc
Confidence 99999999999999999987 456776655555555443
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=326.40 Aligned_cols=210 Identities=19% Similarity=0.268 Sum_probs=165.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc---CCCCCCcceEeeCCcccCCCC-----CCceEEEEecCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL---GKDLRASGKITYCGHELNEFV-----PQRTCAYISQHDL 255 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l---~~~~~~sG~I~~nG~~~~~~~-----~~~~i~yv~Q~d~ 255 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|+. ++. ..+|+|.++|+++.... .++.++|++|++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 46999999999999999999999999999999999973 331 13899999999875421 2357999999988
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (824)
+++ .||.||+.+....++.... + . ....++++++.+||.+...+..
T Consensus 95 ~~~-~tv~~nl~~~~~~~~~~~~----------~---------~--------------~~~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNGVKDN----------A---------F--------------IRQRVEETLKGAALWDEVKDKL 140 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCcH----------H---------H--------------HHHHHHHHHHHcCCCcchhhhh
Confidence 776 5999999886433211000 0 0 0112456788888864321111
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
+..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|+++|++ .++.++||+++
T Consensus 141 -~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~-~~~~~~~d~v~ 216 (250)
T PRK14245 141 -KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK--DYTIVIVTHNM-QQAARVSDKTA 216 (250)
T ss_pred -hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHhhCCEEE
Confidence 123456999999999999999999999999999999999999999999999953 67888877665 46788999999
Q ss_pred EEcCCeEEEecChhhHH
Q 003389 416 LLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (824)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 217 FFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999998874
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=327.74 Aligned_cols=208 Identities=22% Similarity=0.338 Sum_probs=166.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CCcceEeeCCcccCC--C---CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNE--F---VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~--~~sG~I~~nG~~~~~--~---~~~~~i~yv~Q~d~~ 256 (824)
+++|+|+|++|++||+++|+|||||||||||++|+|+++|.. +.+|+|.++|+++.. . ..++.++|++|+..+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNP 96 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccccc
Confidence 469999999999999999999999999999999999987411 249999999988742 1 124679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC----cccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (824)
++.+||+||+.++....+... +. + ....++.+++.+||. +..+
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~---------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~ 143 (258)
T PRK14241 97 FPTMSIRDNVVAGLKLNGVRN---------KK----------D--------------LDELVEKSLRGANLWNEVKDRLD 143 (258)
T ss_pred CCCCcHHHHHHHHHHhcCCCC---------HH----------H--------------HHHHHHHHHHHcCCchhhhhHhh
Confidence 999999999988643221100 00 0 011345678888874 2334
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++.|++ .++.++||
T Consensus 144 ~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~-~~~~~~~d 215 (258)
T PRK14241 144 KPG-----GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNM-QQAARVSD 215 (258)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-HHHHHhCC
Confidence 444 45999999999999999999999999999999999999999999999964 57888877654 47788999
Q ss_pred eEEEEc------CCeEEEecChhhHH
Q 003389 413 DIILLS------EGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~------~G~iv~~G~~~~~~ 432 (824)
++++|+ +|++++.|+++++.
T Consensus 216 ~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 216 QTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEEEEecccCCCCceEEecCCHHHHH
Confidence 999997 79999999988763
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=328.02 Aligned_cols=212 Identities=21% Similarity=0.323 Sum_probs=166.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|. ...+|+|+++|+++... ..++.++|++|++.+
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 111 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCC
Confidence 45999999999999999999999999999999999998741 12399999999887531 124579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++. ||.||+.++...++... .+. + ....++++++.+||.+......
T Consensus 112 ~~~-tv~enl~~~~~~~~~~~--------~~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~- 157 (267)
T PRK14235 112 FPK-SIYENVAYGPRIHGLAR--------SKA----------E--------------LDEIVETSLRKAGLWEEVKDRL- 157 (267)
T ss_pred CCC-cHHHHHHHHHHhccccc--------chH----------H--------------HHHHHHHHHHHcCCchhhhHHh-
Confidence 775 99999988653322100 000 0 0112456788889864211111
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||++++
T Consensus 158 ~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~-~~~~~~~d~v~~ 234 (267)
T PRK14235 158 HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSM-QQAARVSQRTAF 234 (267)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCH-HHHHhhCCEEEE
Confidence 123456999999999999999999999999999999999999999999999964 57888877654 477789999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|+++.+|+.+++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 235 FHLGNLVEVGDTEKMF 250 (267)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999987763
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=323.54 Aligned_cols=212 Identities=18% Similarity=0.281 Sum_probs=166.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|++||+++|+||||||||||+++|+|++++....+|+|+++|+++.... .++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 46999999999999999999999999999999999997531124999999999876432 2457999999988876 6
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.++...++... +... ....++.+++.+||........ +...
T Consensus 94 tv~eni~~~~~~~~~~~------------------~~~~--------------~~~~~~~~l~~~~l~~~~~~~~-~~~~ 140 (246)
T PRK14269 94 SIYENISYAPKLHGMIK------------------NKDE--------------EEALVVDCLQKVGLFEEVKDKL-KQNA 140 (246)
T ss_pred cHHHHhhhHHhhcCccc------------------ChHH--------------HHHHHHHHHHHcCCChhhhHHh-cCCc
Confidence 99999988643322100 0000 0112456788889853211111 2234
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
+.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|+++|++ .++.++||++++|++|
T Consensus 141 ~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~d~i~~l~~G 217 (246)
T PRK14269 141 LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH--NLSMIMVTHNM-QQGKRVADYTAFFHLG 217 (246)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-HHHHhhCcEEEEEECC
Confidence 56999999999999999999999999999999999999999999999864 77888877654 4678899999999999
Q ss_pred eEEEecChhhHH
Q 003389 421 QIVYQGPRDNVL 432 (824)
Q Consensus 421 ~iv~~G~~~~~~ 432 (824)
++++.|+.+++.
T Consensus 218 ~i~~~g~~~~~~ 229 (246)
T PRK14269 218 ELIEFGESKEFF 229 (246)
T ss_pred EEEEECCHHHHH
Confidence 999999988763
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=358.08 Aligned_cols=208 Identities=23% Similarity=0.334 Sum_probs=168.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++|++|+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+++ .
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ 423 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-R 423 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-c
Confidence 35899999999999999999999999999999999999997 9999999998876432 468999999987775 6
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
|++||+.++.. +.+.++..+++...+. ++. ...++...||.+|+ ..
T Consensus 424 ti~~Ni~~~~~-------------------------~~~~~~~~~a~~~~~~------~~~--i~~l~~g~~t~~~~-~~ 469 (585)
T TIGR01192 424 SIRENIRLGRE-------------------------GATDEEVYEAAKAAAA------HDF--ILKRSNGYDTLVGE-RG 469 (585)
T ss_pred cHHHHHhcCCC-------------------------CCCHHHHHHHHHHhCc------HHH--HHhccccccchhcC-CC
Confidence 99999987521 1111222222221111 111 22455667888886 45
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. .++|+|++.|++. ..+.||+|++|++|
T Consensus 470 ~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~--~~~~~d~i~~l~~G 545 (585)
T TIGR01192 470 NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRLS--TVRNADLVLFLDQG 545 (585)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcChH--HHHcCCEEEEEECC
Confidence 6799999999999999999999999999999999999999999999885 3789999888863 45779999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
+++..|+++++.+
T Consensus 546 ~i~~~g~~~~l~~ 558 (585)
T TIGR01192 546 RLIEKGSFQELIQ 558 (585)
T ss_pred EEEEECCHHHHHH
Confidence 9999999988753
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=316.89 Aligned_cols=192 Identities=29% Similarity=0.418 Sum_probs=161.0
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-------CCCceEEEEecCCCCCCCCC
Q 003389 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 189 ~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-------~~~~~i~yv~Q~d~~~~~lT 261 (824)
|||++|++ |+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 99999999 999999999999999999999999887 99999999876421 11357999999998899999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.+...... ... ....+.++++.+||++..++.++
T Consensus 92 ~~~~l~~~~~~~~------------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~----- 130 (214)
T cd03297 92 VRENLAFGLKRKR------------NRE------------------------DRISVDELLDLLGLDHLLNRYPA----- 130 (214)
T ss_pred HHHHHHHHHhhCC------------HHH------------------------HHHHHHHHHHHcCCHhHhhcCcc-----
Confidence 9999987532110 000 01124568889999877776655
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|+++|++ .++.++||++++|++|+
T Consensus 131 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGR 209 (214)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCE
Confidence 59999999999999999999999999999999999999999999999875578888877654 46778999999999999
Q ss_pred EEEec
Q 003389 422 IVYQG 426 (824)
Q Consensus 422 iv~~G 426 (824)
++.+|
T Consensus 210 i~~~g 214 (214)
T cd03297 210 LQYIG 214 (214)
T ss_pred EEecC
Confidence 98775
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=321.46 Aligned_cols=205 Identities=23% Similarity=0.393 Sum_probs=161.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|. +|+|.++|.++.... .++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 90 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-R 90 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-c
Confidence 46999999999999999999999999999999999999887 999999998875422 2457999999987664 6
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc--CCCccccccccCc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~ 338 (824)
||.||+.+... ... .. ...++... .....+++.+ +++...+..+
T Consensus 91 tv~~nl~~~~~--~~~-~~----------------------~~~~~~~~------~~~~~~l~~l~~~~~~~~~~~~--- 136 (237)
T cd03252 91 SIRDNIALADP--GMS-ME----------------------RVIEAAKL------AGAHDFISELPEGYDTIVGEQG--- 136 (237)
T ss_pred hHHHHhhccCC--CCC-HH----------------------HHHHHHHH------cCcHHHHHhCcccccchhhcCC---
Confidence 99999987531 100 00 00000000 0122344554 4544444444
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
+.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ +.|+|++.|++. ++ ..||++++|+
T Consensus 137 --~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~-~~~d~v~~l~ 210 (237)
T cd03252 137 --AGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLS-TV-KNADRIIVME 210 (237)
T ss_pred --CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HH-HhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999863 789999887765 45 5699999999
Q ss_pred CCeEEEecChhhHH
Q 003389 419 EGQIVYQGPRDNVL 432 (824)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (824)
+|++++.|+++++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (237)
T cd03252 211 KGRIVEQGSHDELL 224 (237)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999988764
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=325.69 Aligned_cols=211 Identities=18% Similarity=0.313 Sum_probs=165.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC--CCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK--DLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~--~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|+++| ....+|+|+++|+++... ..++.++|++|++.+
T Consensus 25 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 104 (259)
T PRK14274 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNP 104 (259)
T ss_pred eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcc
Confidence 4699999999999999999999999999999999999873 222489999999987421 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++. ||+||+.+.....+... +. + ....++.+++.+|+.+......
T Consensus 105 ~~~-tv~enl~~~~~~~~~~~---------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~l- 149 (259)
T PRK14274 105 FPQ-SIFDNVAYGPRIHGTKN---------KK----------K--------------LQEIVEKSLKDVALWDEVKDRL- 149 (259)
T ss_pred ccc-CHHHHHHhHHHhcCCCC---------HH----------H--------------HHHHHHHHHHHcCCchhhhhhh-
Confidence 875 99999988643221100 00 0 0112445677888753211111
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+...+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|+++|++ .++.++||++++
T Consensus 150 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~-~~~~~~~d~i~~ 226 (259)
T PRK14274 150 HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNM-QQAARVSDQTAF 226 (259)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCH-HHHHHhCCEEEE
Confidence 123456999999999999999999999999999999999999999999999864 67888887765 477889999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|+++.+|+++++.
T Consensus 227 l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 227 FYMGELVECNDTNKMF 242 (259)
T ss_pred EECCEEEEECCHHHHh
Confidence 9999999999988763
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=326.20 Aligned_cols=205 Identities=19% Similarity=0.290 Sum_probs=162.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|++++. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 105 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP 105 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCcc
Confidence 45999999999999999999999999999999999998631 02499999999886421 123569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC----cccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (824)
++ .||+||+.+.+...+... +. ...++.+++.+++. +..+
T Consensus 106 ~~-~tv~enl~~~~~~~~~~~---------------------~~--------------~~~~~~~l~~~~l~~~l~~~~~ 149 (269)
T PRK14259 106 FP-KSIYENIAFGARINGYTG---------------------DM--------------DELVERSLRKAAVWDECKDKLN 149 (269)
T ss_pred ch-hhHHHHHhhhhhhcCCcH---------------------HH--------------HHHHHHHHHHhCCcchhhhhhC
Confidence 87 499999988754322100 00 01134456666663 2334
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+. ++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|+++|++ .++.++||
T Consensus 150 ~~-----~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiiivtH~~-~~~~~~~d 221 (269)
T PRK14259 150 ES-----GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--NFTIVIVTHNM-QQAVRVSD 221 (269)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcC
Confidence 43 346999999999999999999999999999999999999999999999854 67888877654 57889999
Q ss_pred eEEEEcC-----------CeEEEecChhhHH
Q 003389 413 DIILLSE-----------GQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~-----------G~iv~~G~~~~~~ 432 (824)
++++|++ |++++.|+++++.
T Consensus 222 ~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 222 MTAFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred EEEEEeccccccccccccceEEEeCCHHHHH
Confidence 9999996 6799999998874
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=322.96 Aligned_cols=207 Identities=21% Similarity=0.350 Sum_probs=164.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC--CCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK--DLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~--~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|++++ ....+|+|.++|+++... ..++.++|++|++.+
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14240 16 FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNP 95 (250)
T ss_pred ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCcc
Confidence 3599999999999999999999999999999999998763 212489999999987531 124579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc----ccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (824)
++ +||+||+.+.....+.... .+ ....++++++.+++.+ ..+
T Consensus 96 ~~-~t~~~ni~~~~~~~~~~~~-------------------~~--------------~~~~~~~~l~~~~l~~~l~~~~~ 141 (250)
T PRK14240 96 FP-MSIYDNVAYGPRTHGIKDK-------------------KK--------------LDEIVEKSLKGAALWDEVKDRLK 141 (250)
T ss_pred Cc-ccHHHHHHHHHHhcCCCCH-------------------HH--------------HHHHHHHHHHHcCCchhhHHHHh
Confidence 77 8999999886433221000 00 0112345667777642 234
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+. ++.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|+++|+ ..++.++||
T Consensus 142 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~-~~~~~~~~d 213 (250)
T PRK14240 142 KS-----ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK--DYTIVIVTHN-MQQASRISD 213 (250)
T ss_pred cC-----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEEeC-HHHHHhhCC
Confidence 43 346999999999999999999999999999999999999999999999853 6788887765 457888999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
++++|++|+++..|+++++.
T Consensus 214 ~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 214 KTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=323.11 Aligned_cols=207 Identities=18% Similarity=0.289 Sum_probs=162.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+.+ +....+|+|.++|+++... ..++.++|++|++.+
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 113 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNP 113 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCcc
Confidence 459999999999999999999999999999999999864 2112399999999987531 123579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc----ccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (824)
++. ||+||+.+.....+... ... ....+..+++.+++.. ..+
T Consensus 114 ~~~-tv~enl~~~~~~~~~~~-------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 159 (268)
T PRK14248 114 FPK-SIYNNITHALKYAGERR-------------------KSV--------------LDEIVEESLTKAALWDEVKDRLH 159 (268)
T ss_pred Ccc-cHHHHHHHHHHhcCCCc-------------------HHH--------------HHHHHHHHHHHcCCCcchHHHHh
Confidence 875 99999987642211000 000 0012344667777742 234
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+.+ ..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 160 ~~~-----~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~d 231 (268)
T PRK14248 160 SSA-----LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNM-QQALRVSD 231 (268)
T ss_pred cCc-----ccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCH-HHHHHhCC
Confidence 443 45999999999999999999999999999999999999999999999964 57888877664 46888999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
++++|++|++++.|+.+++.
T Consensus 232 ~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 232 RTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=357.62 Aligned_cols=207 Identities=25% Similarity=0.405 Sum_probs=169.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|+|||.++|+||||||||||+|+|+|+++|. +|+|.+||.++++... ++.++|++|++.+++ .
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~-~ 428 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAELRARMALVPQDPVLFA-A 428 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHHhceEEccCCcccc-c
Confidence 46999999999999999999999999999999999999997 9999999999876543 467999999877665 5
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
|++|||.++. |+.+.+++.+++...+. .+.++ .+++..||.+|+. .
T Consensus 429 Ti~~Ni~~~~-------------------------~~~~~~~~~~~l~~~~l------~~~i~--~l~~gl~t~i~~~-g 474 (576)
T TIGR02204 429 SVMENIRYGR-------------------------PDATDEEVEAAARAAHA------HEFIS--ALPEGYDTYLGER-G 474 (576)
T ss_pred cHHHHHhcCC-------------------------CCCCHHHHHHHHHHcCc------HHHHH--hCCCCCCceeCCC-C
Confidence 9999998752 11111222333222221 12222 3456678888864 5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
..||||||||++|||+++.+|++|+||||||+||+.++..+.+.|+++.+ ++|+|++.|++ +....||+|++|++|
T Consensus 475 ~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~--~~t~IiitH~~--~~~~~~d~vi~l~~g 550 (576)
T TIGR02204 475 VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK--GRTTLIIAHRL--ATVLKADRIVVMDQG 550 (576)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECC
Confidence 67999999999999999999999999999999999999999999999853 78999988876 456789999999999
Q ss_pred eEEEecChhhHH
Q 003389 421 QIVYQGPRDNVL 432 (824)
Q Consensus 421 ~iv~~G~~~~~~ 432 (824)
+++..|+++++.
T Consensus 551 ~~~~~g~~~~l~ 562 (576)
T TIGR02204 551 RIVAQGTHAELI 562 (576)
T ss_pred EEEeeecHHHHH
Confidence 999999988764
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=334.67 Aligned_cols=211 Identities=19% Similarity=0.311 Sum_probs=168.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
..+|+|||++|++|++++|+|||||||||||++|+|..++. ...+|+|.++|+++... ..++.++||+|++.+
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 45999999999999999999999999999999999998631 12389999999998531 225679999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++ .||+||+.|+....+.. .++ .+ ...+..+++.++|.+..++.++
T Consensus 175 ~~-~ti~eNi~~~~~~~~~~----------~~~-------------~~----------~~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 175 FE-MSIFDNVAYGPRNNGIN----------DRK-------------IL----------EKIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred CC-CcHHHHHHhHHHhcCCC----------hHH-------------HH----------HHHHHHHHHHcCCcchhhhhhh
Confidence 74 79999999864321110 000 00 0123456777777554445554
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+.+..|||||||||+|||||+.+|+||+|||||+|||+.+...+.++|+++.+ ++|+|++.|++ ..+.+.||+|++
T Consensus 221 -~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l-~~i~~~~Driiv 296 (329)
T PRK14257 221 -KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSM-AQAQRISDETVF 296 (329)
T ss_pred -CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEE
Confidence 34567999999999999999999999999999999999999999999999875 58888877664 467788999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|++++.|+++++.
T Consensus 297 l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 297 FYQGWIEEAGETKTIF 312 (329)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999999884
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=328.86 Aligned_cols=212 Identities=26% Similarity=0.349 Sum_probs=170.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC-----CCCcceEeeCCcccCCCCC---CceEEEEecCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-----LRASGKITYCGHELNEFVP---QRTCAYISQHDL 255 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~-----~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~ 255 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ ...+|+|.++|+++..... ++.++|++|++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 46999999999999999999999999999999999999874 1128999999998754321 346899999987
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (824)
.++.+||+||+.+......... .... .+ ....++.+++.+||++..++.+
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~~~---------------~~~~-~~--------------~~~~~~~~l~~~~l~~~~~~~~ 143 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHARRA---------------GALT-HR--------------DGEIAWQALALAGATALVGRDV 143 (272)
T ss_pred CCCCCcHHHHHhhccccccccc---------------ccCC-HH--------------HHHHHHHHHHHcCcHhhhcCCc
Confidence 6677999999987532110000 0000 00 0113466888999987767665
Q ss_pred cCccCCCCCHHHHHHHHHHHHHH---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLV---------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv---------~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e 406 (824)
+ .|||||||||+||++|+ .+|++|+|||||+|||+.+...+.+.|+++.+..+.|+|++.|++ .+
T Consensus 144 ~-----~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~ 217 (272)
T PRK13547 144 T-----TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NL 217 (272)
T ss_pred c-----cCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HH
Confidence 5 59999999999999999 599999999999999999999999999999765578888887765 46
Q ss_pred HHhhcCeEEEEcCCeEEEecChhhH
Q 003389 407 TYDLFDDIILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 407 ~~~lfD~iilL~~G~iv~~G~~~~~ 431 (824)
+.++||++++|++|++++.|+.+++
T Consensus 218 ~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 218 AARHADRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred HHHhCCEEEEEECCeEEEecCHHHH
Confidence 7789999999999999999998776
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=328.06 Aligned_cols=206 Identities=24% Similarity=0.331 Sum_probs=169.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC------CceEEEEecCC--C
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHD--L 255 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~~i~yv~Q~d--~ 255 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++....+ ++.++|++|+. .
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 56999999999999999999999999999999999999886 9999999998754322 35799999987 3
Q ss_pred CCCCCCHHHHHHHhhhhc-CCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccc
Q 003389 256 HHGEMTVRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~-~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt 333 (824)
+.+..|+.|++.+..... .. ... +....++++++.+||. ...++
T Consensus 102 ~~~~~t~~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~gl~~~~~~~ 147 (268)
T PRK10419 102 VNPRKTVREIIREPLRHLLSL----------DKA------------------------ERLARASEMLRAVDLDDSVLDK 147 (268)
T ss_pred cCCCCCHHHHHHHHHHhhccC----------CHH------------------------HHHHHHHHHHHHcCCChhHhhC
Confidence 667889999987643210 00 000 0012356788899996 45666
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.++ .||||||||++||++|+.+|++|||||||+|||..++..+.+.|+++++..+.|+|++.|++ .++.++||+
T Consensus 148 ~~~-----~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~ 221 (268)
T PRK10419 148 RPP-----QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQR 221 (268)
T ss_pred CCc-----cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCE
Confidence 554 59999999999999999999999999999999999999999999999875578888887664 477789999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 003389 414 IILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (824)
+++|.+|++++.|+++++.
T Consensus 222 i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 222 VMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EEEEECCEEeeeCChhhcc
Confidence 9999999999999988754
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=322.70 Aligned_cols=208 Identities=23% Similarity=0.322 Sum_probs=164.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~--~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 469999999999999999999999999999999999987631 1379999999887531 124569999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC----cccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (824)
++.+||.||+.+.....+... ..+. ...++.+++.+++. +..+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~-------------------~~~~--------------~~~~~~~l~~~~l~~~l~~~~~ 143 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRD-------------------RDHL--------------MEVAERSLRGAALWDEVKDRLK 143 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCC-------------------HHHH--------------HHHHHHHHHHcCcchhhhhhhc
Confidence 999999999987643221100 0000 01123345555543 3344
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+.+ +.||||||||++||++|+.+|++|+|||||+|||..+...+.+.|+++++ ++|+|+++|++ .++.++||
T Consensus 144 ~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d 215 (252)
T PRK14272 144 TPA-----TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--VTTIIIVTHNM-HQAARVSD 215 (252)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCC
Confidence 444 45999999999999999999999999999999999999999999999864 67888877665 47788999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
++++|++|++++.|+++++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 216 TTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=300.39 Aligned_cols=201 Identities=24% Similarity=0.350 Sum_probs=177.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
..+|+|||++|.+||.+.++||||||||||||++||+.+|. .|+|.+||++++.- ...-|.|+|++.++|.+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCC--CccceeEeccCccchhhHHH
Confidence 45999999999999999999999999999999999999997 99999999998753 34569999999999999999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
+|++|+.+++|++.. .|+ .++...|...||.+..+..+- .|
T Consensus 93 dNvafgL~l~Gi~k~-------~R~---------------------------~~a~q~l~~VgL~~~~~~~i~-----qL 133 (259)
T COG4525 93 DNVAFGLQLRGIEKA-------QRR---------------------------EIAHQMLALVGLEGAEHKYIW-----QL 133 (259)
T ss_pred HHHHHHHHhcCCCHH-------HHH---------------------------HHHHHHHHHhCcccccccceE-----ee
Confidence 999999999887521 111 234668889999988776665 49
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC--Ce
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE--GQ 421 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~--G~ 421 (824)
||||||||.|||||+.+|++|+||||+.+||.-++.++...|-++.+..|+.+++++ |..+|..-++++++||+. |+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliT-H~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLIT-HDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEe-ccHHHHHhhhheeEEecCCCce
Confidence 999999999999999999999999999999999999999999999998888887765 567788889999999985 89
Q ss_pred EEEecChh
Q 003389 422 IVYQGPRD 429 (824)
Q Consensus 422 iv~~G~~~ 429 (824)
|+..-+++
T Consensus 213 vv~~~~~d 220 (259)
T COG4525 213 VVERLPLD 220 (259)
T ss_pred eeEecCCC
Confidence 99887765
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=317.99 Aligned_cols=207 Identities=19% Similarity=0.285 Sum_probs=162.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|+.+ |+...+|+|.++|+++... ..++.++|++|++.+
T Consensus 18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (252)
T PRK14255 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNP 97 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCcc
Confidence 469999999999999999999999999999999999865 3212489999999887421 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC----cccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (824)
++ .||+||+.+.....+.... ... ...+.+.++.+++. +..+
T Consensus 98 ~~-~tv~~nl~~~~~~~~~~~~-------------------~~~--------------~~~~~~~l~~~~l~~~i~~~~~ 143 (252)
T PRK14255 98 FP-FSIYENVIYGLRLAGVKDK-------------------AVL--------------DEAVETSLKQAAIWDEVKDHLH 143 (252)
T ss_pred CC-CcHHHHHHHHHHHcCCCCH-------------------HHH--------------HHHHHHHHHHcCCccchhhHHh
Confidence 87 6999999886433221000 000 00123455666653 2234
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|+++|++ .++.+.||
T Consensus 144 ~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~-~~~~~~~d 215 (252)
T PRK14255 144 ESA-----LSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSM-HQASRISD 215 (252)
T ss_pred cCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCH-HHHHHhCC
Confidence 443 45999999999999999999999999999999999999999999999965 47888877664 47788999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
+|++|++|+++..|+..++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 216 KTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999887763
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=342.78 Aligned_cols=213 Identities=29% Similarity=0.382 Sum_probs=179.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC-CCCcceEeeCCcccCCCCC-------CceEEEEecCC-
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-LRASGKITYCGHELNEFVP-------QRTCAYISQHD- 254 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~-~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d- 254 (824)
..+++||||+|.+||++||+|.|||||||+.++|.|++++. ...+|+|.++|.++..... .+.++||+|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 46999999999999999999999999999999999999876 4568999999997654322 26799999996
Q ss_pred -CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 255 -LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 255 -~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
.+-|-+||.+-+.-..+.++... + .+....+.++|+..||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~---------~------------------------~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGS---------R------------------------AEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhcccc---------H------------------------HHHHHHHHHHHHHcCCCChhhh
Confidence 45677899888876655443211 0 0112345678999999887665
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
+.+++.|||||||||.||+||+.+|++|++||||++||..++.+|++.|+++.++.|.++|+++| +..-+.++|||
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITH-Dl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITH-DLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcC-CHHHHHHhcCe
Confidence 56788999999999999999999999999999999999999999999999999988888888654 55578899999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|+||.+|++|+.|++++++.
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred EEEEECCEEEEecCHHHHHh
Confidence 99999999999999999864
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=321.39 Aligned_cols=212 Identities=17% Similarity=0.292 Sum_probs=166.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCCC-----CCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEFV-----PQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~~-----~~~~i~yv~Q~d~~ 256 (824)
+++|+|+||+|++|++++|+||||||||||+++|+|+.+ |....+|+|+++|+++.... .++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 469999999999999999999999999999999999976 21124999999998864321 24579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++. ||+||+.+....++.... . .+ ....++.+++.+||.+...+.+.
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~--------~----------~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 144 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKN--------K----------KK--------------LDEIVEKSLTSVGLWEELGDRLK 144 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCC--------H----------HH--------------HHHHHHHHHHHcCCCchhhhHhh
Confidence 875 999999876332211000 0 00 01124567888998653222221
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|+++|++. ++.++||++++
T Consensus 145 -~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~-~~~~~~d~i~~ 220 (251)
T PRK14244 145 -DSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK--NFTIIVVTHSMK-QAKKVSDRVAF 220 (251)
T ss_pred -cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHH-HHHhhcCEEEE
Confidence 23456999999999999999999999999999999999999999999999853 788888877654 77789999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|++++.|+++++.
T Consensus 221 l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 221 FQSGRIVEYNTTQEIF 236 (251)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999987763
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=321.88 Aligned_cols=211 Identities=22% Similarity=0.355 Sum_probs=165.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|++++. ...+|+|.++|.++... ..++.++|++|++.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 46999999999999999999999999999999999998741 12489999999887531 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++ +||+||+.+.....+... ... ....++++++.+|+....+.. .
T Consensus 96 ~~-~tv~e~l~~~~~~~~~~~-------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~-~ 140 (250)
T PRK14262 96 FP-MSIYDNVAFGPRIHGVKS-------------------KHK--------------LDRIVEESLKKAALWDEVKSE-L 140 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCc-------------------HHH--------------HHHHHHHHHHHcCCCchhHHH-H
Confidence 77 899999988643221100 000 011234567777875321111 1
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+..++.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++++ ++|+|+++|++ .++.++||++++
T Consensus 141 ~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~-~~~~~~~d~i~~ 217 (250)
T PRK14262 141 NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNI-GQAIRIADYIAF 217 (250)
T ss_pred hCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCH-HHHHHhCCEEEE
Confidence 233456999999999999999999999999999999999999999999999864 57888877664 467889999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|+++..|+++++.
T Consensus 218 l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 218 MYRGELIEYGPTREIV 233 (250)
T ss_pred EECCEEEEecCHHHHH
Confidence 9999999999988764
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=331.70 Aligned_cols=207 Identities=18% Similarity=0.330 Sum_probs=163.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+.+ |....+|+|.++|+++... ..++.++|++|++.+
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNP 131 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCC
Confidence 459999999999999999999999999999999999864 3101399999999887432 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC----cccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (824)
++. ||.||+.+.....+... ... ....+.++++.+|+. +..+
T Consensus 132 ~~~-tv~enl~~~~~~~~~~~-------------------~~~--------------~~~~~~~~l~~~~l~~~l~~~~~ 177 (286)
T PRK14275 132 FPK-SIFDNIAYGPRLHGIND-------------------KKQ--------------LEEIVEKSLRKAALWDEVSDRLD 177 (286)
T ss_pred Ccc-CHHHHHHhHHHhcCCCc-------------------HHH--------------HHHHHHHHHHHhCCccchhhHhh
Confidence 875 99999998643221100 000 001234566777763 3334
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+.+ ..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 178 ~~~-----~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~-~~~~~~~d 249 (286)
T PRK14275 178 KNA-----LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNM-QQASRVSD 249 (286)
T ss_pred CCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCC
Confidence 443 46999999999999999999999999999999999999999999999864 57888877654 46788999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
++++|++|+++..|+++++.
T Consensus 250 ~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 250 YTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=322.10 Aligned_cols=207 Identities=21% Similarity=0.345 Sum_probs=164.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|+++ |....+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14251 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTP 96 (251)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCcc
Confidence 469999999999999999999999999999999999986 2112499999999987431 124569999999877
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc----ccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (824)
++ .||+||+.+.....+... .+. ....++++++.++|.. ..+
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~--------------------~~~-------------~~~~~~~~l~~~~l~~~~~~~~~ 142 (251)
T PRK14251 97 FP-FSVYDNVAYGLKIAGVKD--------------------KEL-------------IDQRVEESLKQAAIWKETKDNLD 142 (251)
T ss_pred CC-CcHHHHHHHHHHHcCCCC--------------------HHH-------------HHHHHHHHHHHcCCCcchHHHhc
Confidence 75 799999987643221100 000 0012455777888842 234
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
.. .+.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ +.|+|+++|++ .++.++||
T Consensus 143 ~~-----~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~-~~~~~~~d 214 (251)
T PRK14251 143 RN-----AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIMVTHNL-QQAGRISD 214 (251)
T ss_pred cC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCH-HHHHhhcC
Confidence 33 346999999999999999999999999999999999999999999999864 57888877664 46788899
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
++++|++|+++..|+.+++.
T Consensus 215 ~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 215 QTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=311.95 Aligned_cols=211 Identities=22% Similarity=0.309 Sum_probs=188.1
Q ss_pred cccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCC
Q 003389 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGE 259 (824)
Q Consensus 180 ~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~ 259 (824)
+.+++.+++|+||.++||+|.+++|||||||||.+++|.|++.|+ +|+|+++|.+++... +..|||+|.+..+++.
T Consensus 11 ~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k 86 (300)
T COG4152 11 SFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEI-KNRIGYLPEERGLYPK 86 (300)
T ss_pred ccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhh-hhhcccChhhhccCcc
Confidence 345678999999999999999999999999999999999999997 999999999987543 4679999999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||.|.|.|-|++.|+... + .....+++|+.+++......+|.
T Consensus 87 ~tv~dql~yla~LkGm~~~----------e------------------------~~~~~~~wLer~~i~~~~~~kIk--- 129 (300)
T COG4152 87 MTVEDQLKYLAELKGMPKA----------E------------------------IQKKLQAWLERLEIVGKKTKKIK--- 129 (300)
T ss_pred CcHHHHHHHHHHhcCCcHH----------H------------------------HHHHHHHHHHhccccccccchHH---
Confidence 9999999999999887421 1 12246789999999888777765
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.||-|.+|++.+-.+++.+|++++||||+|||||.++..+-+.+.++.. .|.|||++.| -.+.+.++||++++|++
T Consensus 130 --~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~-~GatIifSsH-~Me~vEeLCD~llmL~k 205 (300)
T COG4152 130 --ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE-EGATIIFSSH-RMEHVEELCDRLLMLKK 205 (300)
T ss_pred --HhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh-cCCEEEEecc-hHHHHHHHhhhhheecC
Confidence 4999999999999999999999999999999999999999999999986 5999999865 46789999999999999
Q ss_pred CeEEEecChhhHHHHH
Q 003389 420 GQIVYQGPRDNVLEFF 435 (824)
Q Consensus 420 G~iv~~G~~~~~~~~f 435 (824)
|+.|.+|+.+++..-|
T Consensus 206 G~~V~~G~v~~ir~~~ 221 (300)
T COG4152 206 GQTVLYGTVEDIRRSF 221 (300)
T ss_pred CceEEeccHHHHHHhc
Confidence 9999999999998644
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=321.28 Aligned_cols=210 Identities=22% Similarity=0.312 Sum_probs=165.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|++++. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 38 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l 117 (272)
T PRK14236 38 KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNP 117 (272)
T ss_pred eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCcc
Confidence 35999999999999999999999999999999999998741 12499999999987531 124679999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++. ||+||+.+.....+...+ . . ....++++++.+++.....+..
T Consensus 118 ~~~-tv~enl~~~~~~~~~~~~---------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~- 162 (272)
T PRK14236 118 FPK-SIYENVVYGLRLQGINNR---------R----------V--------------LDEAVERSLRGAALWDEVKDRL- 162 (272)
T ss_pred Ccc-cHHHHHHHHHHhcCCCcH---------H----------H--------------HHHHHHHHHHHcCCChhHHHHh-
Confidence 876 999999886433221000 0 0 0012455677777753211111
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+...+.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|+++|++ .++.+.||++++
T Consensus 163 ~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~-~~~~~~~d~i~~ 239 (272)
T PRK14236 163 HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNM-QQAARVSDYTAF 239 (272)
T ss_pred hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCH-HHHHhhCCEEEE
Confidence 123456999999999999999999999999999999999999999999999974 57888877664 467889999999
Q ss_pred EcCCeEEEecChhhH
Q 003389 417 LSEGQIVYQGPRDNV 431 (824)
Q Consensus 417 L~~G~iv~~G~~~~~ 431 (824)
|++|++++.|+++++
T Consensus 240 l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 240 MYMGKLVEYGDTDTL 254 (272)
T ss_pred EECCEEEecCCHHHH
Confidence 999999999998776
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=320.16 Aligned_cols=210 Identities=20% Similarity=0.307 Sum_probs=164.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCC-C---CCCceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNE-F---VPQRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~-~---~~~~~i~yv~Q~d~~~ 257 (824)
+.+|+|+|++|++||+++|+||||||||||+++|+|+.+|. ...+|+|.++|.++.. . ..++.++|++|++.++
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 95 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPF 95 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcC
Confidence 46999999999999999999999999999999999998752 1238999999988742 1 1245799999998888
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+ .||.||+.++....+... .... ...++++++.+|+.+...... +
T Consensus 96 ~-~tv~~~l~~~~~~~~~~~-------------------~~~~--------------~~~~~~~~~~~~l~~~~~~~~-~ 140 (249)
T PRK14253 96 P-MSIYENVAYGLRAQGIKD-------------------KKVL--------------DEVVERSLRGAALWDEVKDRL-K 140 (249)
T ss_pred c-ccHHHHHHhHHHhcCCCc-------------------hHHH--------------HHHHHHHHHHcCCchhhhHHh-h
Confidence 7 899999987643221100 0000 012344566777643211111 1
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.....|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|+++|++ .++.++||++++|
T Consensus 141 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~-~~~~~~~d~i~~l 217 (249)
T PRK14253 141 SHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSM-QQARRISDRTAFF 217 (249)
T ss_pred cCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCH-HHHHHhCCEEEEE
Confidence 23346999999999999999999999999999999999999999999999975 57888887765 4788899999999
Q ss_pred cCCeEEEecChhhH
Q 003389 418 SEGQIVYQGPRDNV 431 (824)
Q Consensus 418 ~~G~iv~~G~~~~~ 431 (824)
++|++++.|+.+++
T Consensus 218 ~~G~i~~~g~~~~~ 231 (249)
T PRK14253 218 LMGELVEHDDTQVI 231 (249)
T ss_pred ECCEEEEeCCHHHH
Confidence 99999999998765
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=355.05 Aligned_cols=208 Identities=24% Similarity=0.369 Sum_probs=172.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 46999999999999999999999999999999999999987 9999999988753221 3569999999989999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.++......... .... +....++++++.+||.+..+..+++
T Consensus 94 ~tv~e~l~~~~~~~~~~~~------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 141 (501)
T PRK10762 94 LTIAENIFLGREFVNRFGR------IDWK------------------------KMYAEADKLLARLNLRFSSDKLVGE-- 141 (501)
T ss_pred CcHHHHhhhccccccccCc------cCHH------------------------HHHHHHHHHHHHcCCCCCccCchhh--
Confidence 9999999986432110000 0000 0011356689999999888877765
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+|++.|+ .+++.++||+|++|++
T Consensus 142 ---LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd-~~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 142 ---LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHR-LKEIFEICDDVTVFRD 216 (501)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC-HHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999976 47888887655 4578899999999999
Q ss_pred CeEEEecChhhH
Q 003389 420 GQIVYQGPRDNV 431 (824)
Q Consensus 420 G~iv~~G~~~~~ 431 (824)
|+++..|+.+++
T Consensus 217 G~i~~~~~~~~~ 228 (501)
T PRK10762 217 GQFIAEREVADL 228 (501)
T ss_pred CEEEEecCcCcC
Confidence 999999987654
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=322.67 Aligned_cols=205 Identities=20% Similarity=0.294 Sum_probs=161.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~--~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++||+++|+||||||||||+++|+|++++.. ..+|+|.++|+++... ..++.++|++|+..+
T Consensus 33 ~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l 112 (274)
T PRK14265 33 FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNP 112 (274)
T ss_pred eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcc
Confidence 359999999999999999999999999999999999986421 2489999999887421 124679999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC----cccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (824)
++. ||.||+.+.....+.. .+.+ ..++..++.+++. +..+
T Consensus 113 ~~~-tv~~nl~~~~~~~~~~---------------------~~~~--------------~~~~~~l~~~~l~~~l~~~~~ 156 (274)
T PRK14265 113 FPK-SIYENIAFAPRANGYK---------------------GNLD--------------ELVEDSLRRAAIWEEVKDKLK 156 (274)
T ss_pred ccc-cHHHHHHhHHHhcCch---------------------HHHH--------------HHHHHHHHHcccchhhHHHhc
Confidence 764 9999998764321100 0000 0123345566653 2233
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+. +..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 157 ~~-----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~-~~~~~~~d 228 (274)
T PRK14265 157 EK-----GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNM-QQASRVAD 228 (274)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCC
Confidence 33 446999999999999999999999999999999999999999999999964 57888876654 57889999
Q ss_pred eEEEEc---------CCeEEEecChhhHH
Q 003389 413 DIILLS---------EGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~---------~G~iv~~G~~~~~~ 432 (824)
++++|+ +|++++.|+++++.
T Consensus 229 ~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 229 WTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred EEEEEecccccccccCceEEEeCCHHHHH
Confidence 999997 89999999998874
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=321.67 Aligned_cols=207 Identities=23% Similarity=0.345 Sum_probs=166.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcc-----cCCCCC-------CceEEEEe
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE-----LNEFVP-------QRTCAYIS 251 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~-----~~~~~~-------~~~i~yv~ 251 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|. +|+|.++|.+ +..... ++.++|++
T Consensus 16 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 92 (253)
T TIGR02323 16 GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVH 92 (253)
T ss_pred ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEecccccccccccCCHHHHHHhhhcceEEEE
Confidence 45899999999999999999999999999999999999887 9999999976 543221 24589999
Q ss_pred cCCC--CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-
Q 003389 252 QHDL--HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD- 328 (824)
Q Consensus 252 Q~d~--~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~- 328 (824)
|++. +.+.+|+.||+.+........ ...+ ....++++++.+|+.
T Consensus 93 q~~~~~~~~~~~~~~~i~~~~~~~~~~-------------------~~~~--------------~~~~~~~~l~~l~l~~ 139 (253)
T TIGR02323 93 QNPRDGLRMRVSAGANIGERLMAIGAR-------------------HYGN--------------IRAAAHDWLEEVEIDP 139 (253)
T ss_pred eCcccccCccccHHHHHHHHHHHhccc-------------------chHH--------------HHHHHHHHHHHcCCCh
Confidence 9864 456679999987542111000 0000 011345688999996
Q ss_pred ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHH
Q 003389 329 ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (824)
Q Consensus 329 ~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~ 408 (824)
...++.+. .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|+ ..++.
T Consensus 140 ~~~~~~~~-----~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~-~~~~~ 213 (253)
T TIGR02323 140 TRIDDLPR-----AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD-LGVAR 213 (253)
T ss_pred hhhhcCch-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHH
Confidence 35666554 5999999999999999999999999999999999999999999999876557888887765 45777
Q ss_pred hhcCeEEEEcCCeEEEecChhhHH
Q 003389 409 DLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 409 ~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
++||++++|++|++++.|+.+++.
T Consensus 214 ~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 214 LLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred HhcCEEEEEECCEEEEECCHHHHh
Confidence 899999999999999999987663
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=355.27 Aligned_cols=209 Identities=26% Similarity=0.316 Sum_probs=172.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+.+|+|||++|++|++++|+||||||||||||+|+|+++|+ ..+|+|.++|+++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 46999999999999999999999999999999999999861 139999999998754321 3569999999988999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.+.......+. ...+ +....++++++.+||++..++.+++
T Consensus 97 ~tv~e~l~~~~~~~~~~~-------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (506)
T PRK13549 97 LSVLENIFLGNEITPGGI-------MDYD------------------------AMYLRAQKLLAQLKLDINPATPVGN-- 143 (506)
T ss_pred CcHHHHhhhcccccccCC-------cCHH------------------------HHHHHHHHHHHHcCCCCCcccchhh--
Confidence 999999988653211000 0000 0011356788999998888877764
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+|++.|+ ..++.++||++++|++
T Consensus 144 ---LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~-~~~~~~~~d~v~~l~~ 218 (506)
T PRK13549 144 ---LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHK-LNEVKAISDTICVIRD 218 (506)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCc-HHHHHHhcCEEEEEEC
Confidence 999999999999999999999999999999999999999999999975 47888887655 4578889999999999
Q ss_pred CeEEEecChhhH
Q 003389 420 GQIVYQGPRDNV 431 (824)
Q Consensus 420 G~iv~~G~~~~~ 431 (824)
|++++.|+.+++
T Consensus 219 G~i~~~~~~~~~ 230 (506)
T PRK13549 219 GRHIGTRPAAGM 230 (506)
T ss_pred CEEeeecccccC
Confidence 999999987764
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=320.30 Aligned_cols=211 Identities=20% Similarity=0.287 Sum_probs=164.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|. .+.+|+|.++|.++... ..++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (251)
T PRK14249 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNP 96 (251)
T ss_pred eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCcc
Confidence 45999999999999999999999999999999999999874 11269999999887431 124679999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++. ||+||+.+....++... . .+. ...++.+++.+||.+......
T Consensus 97 ~~~-tv~enl~~~~~~~~~~~----------~---------~~~--------------~~~~~~~l~~~~l~~~l~~~~- 141 (251)
T PRK14249 97 FPK-SIFDNVAFGPRMLGTTA----------Q---------SRL--------------DEVVEKSLRQAALWDEVKDNL- 141 (251)
T ss_pred CcC-cHHHHHhhHHHhcCCCh----------h---------hHH--------------HHHHHHHHHHhCCchhhhhHh-
Confidence 875 99999988653322100 0 000 012344566666643211111
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+..+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++. .+.|+|++.|+ ..++.++||++++
T Consensus 142 ~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tilivsh~-~~~~~~~~d~i~~ 218 (251)
T PRK14249 142 HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK--QNYTIAIVTHN-MQQAARASDWTGF 218 (251)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEeCC-HHHHHhhCCEEEE
Confidence 23345699999999999999999999999999999999999999999999984 37888888765 4577889999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|++++.|+++++.
T Consensus 219 l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 219 LLTGDLVEYGRTGEIF 234 (251)
T ss_pred EeCCeEEEeCCHHHHH
Confidence 9999999999988763
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=360.28 Aligned_cols=221 Identities=24% Similarity=0.291 Sum_probs=180.7
Q ss_pred HhhhcccccCcc----------cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccC
Q 003389 170 ALGLLHLVPSKK----------RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239 (824)
Q Consensus 170 ~l~~~~~~~~~~----------~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~ 239 (824)
++++.++...+. +.+.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~i~ 389 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQRID 389 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEECC
Confidence 466666655442 1246999999999999999999999999999999999999887 999999999875
Q ss_pred CCC------CCceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhc
Q 003389 240 EFV------PQRTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAG 311 (824)
Q Consensus 240 ~~~------~~~~i~yv~Q~d--~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~ 311 (824)
... .++.++||+|++ .+++.+||.|++.+.....+... +.+
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~---------~~~---------------------- 438 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLP---------GKA---------------------- 438 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCC---------HHH----------------------
Confidence 432 135799999986 58889999999987643322100 000
Q ss_pred cchhhhHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 003389 312 QETSLVTDYVLKILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (824)
Q Consensus 312 ~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~ 390 (824)
....+.++|+.+||+ ...++.++ .|||||||||+||++|+.+|++|||||||+|||..++.++++.|+++++
T Consensus 439 --~~~~~~~~L~~~gL~~~~~~~~~~-----~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~ 511 (623)
T PRK10261 439 --AAARVAWLLERVGLLPEHAWRYPH-----EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQR 511 (623)
T ss_pred --HHHHHHHHHHHcCCCHHHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 012356789999996 56676665 5999999999999999999999999999999999999999999999987
Q ss_pred hCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhHH
Q 003389 391 ILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 391 ~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
..+.|+|+++|+ ...+.++||+|++|++|++++.|+++++.
T Consensus 512 ~~g~tvi~isHd-l~~v~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 512 DFGIAYLFISHD-MAVVERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred hcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 668888887654 55788999999999999999999998874
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=354.47 Aligned_cols=201 Identities=23% Similarity=0.353 Sum_probs=172.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 46999999999999999999999999999999999999987 9999999998754322 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.|..... + + ....++++++.+||++..++.+++
T Consensus 101 ~tv~e~l~~~~~~~-------------~-~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (510)
T PRK15439 101 LSVKENILFGLPKR-------------Q-A------------------------SMQKMKQLLAALGCQLDLDSSAGS-- 140 (510)
T ss_pred CcHHHHhhcccccc-------------h-H------------------------HHHHHHHHHHHcCCCccccCChhh--
Confidence 99999998853100 0 0 011345688999998888877764
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|++.|+ ..++.++||+|++|++
T Consensus 141 ---LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd-~~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 141 ---LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISHK-LPEIRQLADRISVMRD 215 (510)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999976 47888887655 4577889999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|++++.|+.+++.
T Consensus 216 G~i~~~g~~~~~~ 228 (510)
T PRK15439 216 GTIALSGKTADLS 228 (510)
T ss_pred CEEEEecChHHcC
Confidence 9999999987653
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=316.75 Aligned_cols=205 Identities=25% Similarity=0.411 Sum_probs=162.6
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCCC
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~lT 261 (824)
.+|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|+++|.++.... .++.++|++|++.+++ .|
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DT 91 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC---CCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-cc
Confidence 6999999999999999999999999999999999999886 999999998765432 1356999999987776 69
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc--CCCccccccccCcc
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDEM 339 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~~ 339 (824)
|+||+.+...... . .. ... ... ....+..++.+ |+.+..+..+
T Consensus 92 v~enl~~~~~~~~---~----~~---------------~~~---~~~------~~~~~~~~~~l~~~l~~~~~~~~---- 136 (234)
T cd03251 92 VAENIAYGRPGAT---R----EE---------------VEE---AAR------AANAHEFIMELPEGYDTVIGERG---- 136 (234)
T ss_pred HHHHhhccCCCCC---H----HH---------------HHH---HHH------HcCcHHHHHhcccCcceeeccCC----
Confidence 9999987532110 0 00 000 000 00123455555 5655555444
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|+++|++. ++.. ||++++|++
T Consensus 137 -~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~~-~d~v~~l~~ 211 (234)
T cd03251 137 -VKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK--NRTTFVIAHRLS-TIEN-ADRIVVLED 211 (234)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEecCHH-HHhh-CCEEEEecC
Confidence 46999999999999999999999999999999999999999999999963 789988887764 5544 999999999
Q ss_pred CeEEEecChhhHHH
Q 003389 420 GQIVYQGPRDNVLE 433 (824)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (824)
|++++.|+.+++.+
T Consensus 212 G~i~~~~~~~~~~~ 225 (234)
T cd03251 212 GKIVERGTHEELLA 225 (234)
T ss_pred CeEeeeCCHHHHHH
Confidence 99999999877643
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=320.25 Aligned_cols=222 Identities=20% Similarity=0.351 Sum_probs=171.7
Q ss_pred HHhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC---CCcceEeeCCcccCCCC---
Q 003389 169 SALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL---RASGKITYCGHELNEFV--- 242 (824)
Q Consensus 169 ~~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~---~~sG~I~~nG~~~~~~~--- 242 (824)
.++++.++.+.+. ++.+|+|||++|++||+++|+||||||||||+++|+|.++|+. .+.|+|.++|+++....
T Consensus 9 ~~i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 9 DVFNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred hheeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 3455556655443 4579999999999999999999999999999999999998860 11245555555553222
Q ss_pred CCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHH
Q 003389 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 322 (824)
Q Consensus 243 ~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL 322 (824)
.++.++|++|++.+++.+||+||+.+.....+.. +..+ ....+++++
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~-------------------~~~~--------------~~~~~~~~~ 134 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIK-------------------EKRE--------------IKKIVEECL 134 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCC-------------------CHHH--------------HHHHHHHHH
Confidence 2467999999999999999999998864321110 0000 011245678
Q ss_pred HHcCCCc----cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 003389 323 KILGLDI----CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV 398 (824)
Q Consensus 323 ~~lgL~~----~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIi 398 (824)
+.+|+.+ ..+.. ++.||||||||++|||+|+.+|++++|||||+|||..+...+.+.|+++.+ +.|+|+
T Consensus 135 ~~~~l~~~~~~~~~~~-----~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiil 207 (257)
T PRK14246 135 RKVGLWKEVYDRLNSP-----ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVI 207 (257)
T ss_pred HHcCCCccchhhhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEE
Confidence 8888853 33443 446999999999999999999999999999999999999999999999864 588888
Q ss_pred EEccCchhHHhhcCeEEEEcCCeEEEecChhhHH
Q 003389 399 ALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 399 si~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
++|++ .++.++||++++|++|+++.+|+.+++.
T Consensus 208 vsh~~-~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 208 VSHNP-QQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred EECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 87765 4677899999999999999999988764
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=321.66 Aligned_cols=213 Identities=23% Similarity=0.340 Sum_probs=168.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
..+|+|+|++|++|++++|+|||||||||||++|+|+++|+ ...+|+|.++|+++... ..++.++|++|+..+
T Consensus 20 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l 99 (261)
T PRK14258 20 QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNL 99 (261)
T ss_pred eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCcc
Confidence 35999999999999999999999999999999999999873 12479999999886421 124569999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++ +||+||+.+.....+.. +..+. ...+..+++.+++.+..+...
T Consensus 100 ~~-~tv~enl~~~~~~~~~~-------------------~~~~~--------------~~~~~~~l~~~~l~~~~~~~~- 144 (261)
T PRK14258 100 FP-MSVYDNVAYGVKIVGWR-------------------PKLEI--------------DDIVESALKDADLWDEIKHKI- 144 (261)
T ss_pred Cc-ccHHHHHHHHHHhcCCC-------------------cHHHH--------------HHHHHHHHHHcCCcchhhhHh-
Confidence 77 89999998764321110 00000 112456778888754221111
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+.....|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++..+.|+|++.|++ .++.++||+|++
T Consensus 145 ~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~ 223 (261)
T PRK14258 145 HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAF 223 (261)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEE
Confidence 2234569999999999999999999999999999999999999999999998764578888877665 578899999999
Q ss_pred EcC-----CeEEEecChhhHH
Q 003389 417 LSE-----GQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~-----G~iv~~G~~~~~~ 432 (824)
|++ |+++++|+++++.
T Consensus 224 l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 224 FKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred EccCCCcCceEEEeCCHHHHH
Confidence 999 9999999998873
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=292.88 Aligned_cols=200 Identities=25% Similarity=0.361 Sum_probs=174.8
Q ss_pred ccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-------CCceEEEEecC
Q 003389 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQH 253 (824)
Q Consensus 181 ~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~i~yv~Q~ 253 (824)
.....||++|++.|++||-++|+|||||||||||-+|+|+..|+ +|+|.+.|+++.... ..+.+|+|+|.
T Consensus 20 ~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQS 96 (228)
T COG4181 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQS 96 (228)
T ss_pred CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEEEe
Confidence 45677999999999999999999999999999999999999997 999999999886542 23789999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
..++|+||-.||+...+.+++-..+ +........|+.+||.+..+.
T Consensus 97 F~Lip~ltAlENV~lPleL~ge~~~----------------------------------~~~~~A~~lL~~vGLg~Rl~H 142 (228)
T COG4181 97 FHLIPNLTALENVALPLELRGESSA----------------------------------DSRAGAKALLEAVGLGKRLTH 142 (228)
T ss_pred eeccccchhhhhccchhhhcCCccc----------------------------------cHHHHHHHHHHHhCccccccc
Confidence 9999999999999988777653211 011124568899999988876
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
+++ .|||||+|||+||||++..|++||.||||-+||..|..+|.+.|-.+.++.|.|.|+++|+|. ...-|||
T Consensus 143 yP~-----qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R 215 (228)
T COG4181 143 YPA-----QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDR 215 (228)
T ss_pred Ccc-----ccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhh
Confidence 665 599999999999999999999999999999999999999999999999999999999988764 6678999
Q ss_pred EEEEcCCeEEE
Q 003389 414 IILLSEGQIVY 424 (824)
Q Consensus 414 iilL~~G~iv~ 424 (824)
++-|.+|+++.
T Consensus 216 ~~r~~~G~l~~ 226 (228)
T COG4181 216 QLRLRSGRLVE 226 (228)
T ss_pred eeeeecceecc
Confidence 99999999974
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=314.23 Aligned_cols=196 Identities=26% Similarity=0.395 Sum_probs=165.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d~~~ 257 (824)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL 94 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhc
Confidence 56999999999999999999999999999999999999887 999999999875432 136799999999889
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+++|+.||+.++...... ...+ +....++++++.+||.+..++.+.
T Consensus 95 ~~~t~~~n~~~~~~~~~~---------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 140 (220)
T TIGR02982 95 GFLTARQNVQMALELQPN---------LSYQ------------------------EARERARAMLEAVGLGDHLDYYPH- 140 (220)
T ss_pred CCCCHHHHHHHHHHhccC---------CCHH------------------------HHHHHHHHHHHHcCChhhhhcChh-
Confidence 999999999986432210 0000 001135668899999877777664
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..++|+|+++|++. +.++||++++|
T Consensus 141 ----~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l 214 (220)
T TIGR02982 141 ----NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHM 214 (220)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEE
Confidence 599999999999999999999999999999999999999999999998655889999888763 56899999999
Q ss_pred cCCeE
Q 003389 418 SEGQI 422 (824)
Q Consensus 418 ~~G~i 422 (824)
.+|++
T Consensus 215 ~~g~~ 219 (220)
T TIGR02982 215 EDGKL 219 (220)
T ss_pred ECCEE
Confidence 99986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=316.22 Aligned_cols=195 Identities=25% Similarity=0.405 Sum_probs=156.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|..+|+ +|+|.++|+++.... .++.++|++|++.+++ .
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 92 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-G 92 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-c
Confidence 46999999999999999999999999999999999999886 999999998765322 1357999999987776 6
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc----
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG---- 336 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg---- 336 (824)
||.||+.+..... . ...+.++++.++|.+..+..+.
T Consensus 93 tv~e~l~~~~~~~---~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~~~~~ 132 (220)
T cd03245 93 TLRDNITLGAPLA---D-------------------------------------DERILRAAELAGVTDFVNKHPNGLDL 132 (220)
T ss_pred hHHHHhhcCCCCC---C-------------------------------------HHHHHHHHHHcCcHHHHHhccccccc
Confidence 9999997742110 0 0012234455555544443321
Q ss_pred --CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 337 --DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 337 --~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
......|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++. .. ++||++
T Consensus 133 ~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~-~~~d~v 208 (220)
T cd03245 133 QIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPS-LL-DLVDRI 208 (220)
T ss_pred eecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HH-HhCCEE
Confidence 123456999999999999999999999999999999999999999999999875 378888887765 44 799999
Q ss_pred EEEcCCeEEEec
Q 003389 415 ILLSEGQIVYQG 426 (824)
Q Consensus 415 ilL~~G~iv~~G 426 (824)
++|++|++++.|
T Consensus 209 ~~l~~g~i~~~~ 220 (220)
T cd03245 209 IVMDSGRIVADG 220 (220)
T ss_pred EEEeCCeEeecC
Confidence 999999998764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=311.00 Aligned_cols=189 Identities=22% Similarity=0.314 Sum_probs=157.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-------CCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~i~yv~Q~d~~ 256 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFAL 87 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccchhhHHHHHHhCeeEEecchhh
Confidence 46999999999999999999999999999999999999887 999999999854211 23579999999998
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++.+||+||+.+.....+.. +. +....++++++.+||++..++.+.
T Consensus 88 ~~~~t~~e~~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 133 (206)
T TIGR03608 88 IENETVEENLDLGLKYKKLS----------KK------------------------EKREKKKEALEKVGLNLKLKQKIY 133 (206)
T ss_pred ccCCcHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCchhhhcCChh
Confidence 99999999999864322110 00 001134668899999887777665
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ .+.|+|++.|++. ..+.||++++
T Consensus 134 -----~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~--~~~~~d~i~~ 205 (206)
T TIGR03608 134 -----ELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDPE--VAKQADRVIE 205 (206)
T ss_pred -----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--HHhhcCEEEe
Confidence 4999999999999999999999999999999999999999999999976 4889999888764 3468999987
Q ss_pred E
Q 003389 417 L 417 (824)
Q Consensus 417 L 417 (824)
|
T Consensus 206 l 206 (206)
T TIGR03608 206 L 206 (206)
T ss_pred C
Confidence 5
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=353.83 Aligned_cols=230 Identities=23% Similarity=0.314 Sum_probs=174.2
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.++.....+|+.++++.+++.-. .+............++.|+|+++.++
T Consensus 297 ~~~~~~~~~ri~~~l~~~~~~~~---~~~~~~~~~~~~~~~I~~~~vsf~Y~---------------------------- 345 (529)
T TIGR02868 297 LTRVRAAAERIEEVTGAKGPRPE---GVVPAAGALGLGKPTLELRDLSFGYP---------------------------- 345 (529)
T ss_pred HHHHHHHHHHHHHHhcCCCCcCC---CCCCCCcccCCCCceEEEEEEEEecC----------------------------
Confidence 34566677788777766544100 00000000111234688888887631
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
+++++|+|+|++|+||+.++|+||||||||||+|+|+|+++|+ +|+|.+||.++++. . ++.++||+|+
T Consensus 346 -----~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~ 416 (529)
T TIGR02868 346 -----GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSL-QDELRRRISVFAQD 416 (529)
T ss_pred -----CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhH-HHHHHhheEEEccC
Confidence 1234999999999999999999999999999999999999997 99999999998876 4 4689999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+|+. ||+|||.++. |+.+.+++.+++...+.++ . .-.|++..||
T Consensus 417 ~~lF~~-TI~eNI~~g~-------------------------~~~~~e~i~~al~~a~l~~------~--i~~lp~GldT 462 (529)
T TIGR02868 417 AHLFDT-TVRDNLRLGR-------------------------PDATDEELWAALERVGLAD------W--LRSLPDGLDT 462 (529)
T ss_pred cccccc-cHHHHHhccC-------------------------CCCCHHHHHHHHHHcCCHH------H--HHhCcccccc
Confidence 887765 9999998852 2222334444544443222 1 2357788999
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
.+|+. ...||||||||++|||||+++|++|+||||||+||+.++..|.+.|+++. .++|+|++.|++
T Consensus 463 ~ige~-G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 463 VLGEG-GARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred hhccc-cCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 99974 45699999999999999999999999999999999999999999999875 378999988863
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=321.56 Aligned_cols=211 Identities=19% Similarity=0.272 Sum_probs=167.3
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHD 254 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d 254 (824)
+++.+|+|+|++|++|++++|+||||||||||+++|+|+++|. ...+|+|+++|+++... ..++.++|++|++
T Consensus 19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 98 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98 (261)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCC
Confidence 3457999999999999999999999999999999999999761 11489999999987431 1245699999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
.++ .+||.||+.++....+.. .+ ....++++++.++|.+..+..
T Consensus 99 ~~~-~~tv~enl~~~~~~~~~~---------------------~~--------------~~~~~~~~l~~~~l~~~i~~~ 142 (261)
T PRK14263 99 NPF-SMSIFDNVAFGLRLNRYK---------------------GD--------------LGDRVKHALQGAALWDEVKDK 142 (261)
T ss_pred ccc-cccHHHHHHHHHhhcCch---------------------HH--------------HHHHHHHHHHHcCCchhhhhh
Confidence 777 599999998875432110 00 001245577888875433222
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
.+ ...+.||||||||++|||+|+.+|++|+|||||+|||+.++.++.+.|+++.+ +.|+|++.|++ .++.++||++
T Consensus 143 ~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~--~~tii~isH~~-~~i~~~~d~v 218 (261)
T PRK14263 143 LK-VSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK--DYTIALVTHNM-QQAIRVADTT 218 (261)
T ss_pred hh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCCEE
Confidence 22 34557999999999999999999999999999999999999999999999953 67888876654 4688999999
Q ss_pred EEEc--------CCeEEEecChhhHH
Q 003389 415 ILLS--------EGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~--------~G~iv~~G~~~~~~ 432 (824)
++|+ +|++++.|+++++.
T Consensus 219 ~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 219 AFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred EEEecccccccCCceEEEeCCHHHHH
Confidence 9996 89999999988764
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=308.82 Aligned_cols=171 Identities=40% Similarity=0.724 Sum_probs=152.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l--~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|++ +|. +|+|.++|+++.....++.++|++|++.+++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 46999999999999999999999999999999999999 876 9999999998764333567999999998899999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.+..+ +.
T Consensus 99 ~~~~i~~~~~-----------------------------------------------------~~--------------- 110 (194)
T cd03213 99 VRETLMFAAK-----------------------------------------------------LR--------------- 110 (194)
T ss_pred HHHHHHHHHH-----------------------------------------------------hc---------------
Confidence 9999976310 00
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||+||++|+.+|++++|||||+|||..++..+.+.|+++.+ .++|+|++.|++..++.++||++++|++|+
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~ 189 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGR 189 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCE
Confidence 3999999999999999999999999999999999999999999999875 488999998887667888999999999999
Q ss_pred EEEec
Q 003389 422 IVYQG 426 (824)
Q Consensus 422 iv~~G 426 (824)
+++.|
T Consensus 190 i~~~~ 194 (194)
T cd03213 190 VIYFG 194 (194)
T ss_pred EEecC
Confidence 98764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=323.22 Aligned_cols=225 Identities=24% Similarity=0.337 Sum_probs=173.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCCC----CCceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEFV----PQRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~~----~~~~i~yv~Q~d~~~ 257 (824)
+++|+|||++|++||+++|+||||||||||+++|+|+++|. ...+|+|.++|+++.... .++.++|++|++.++
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~ 113 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF 113 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccC
Confidence 56999999999999999999999999999999999998751 124999999998875431 246799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+ +||+||+.+........ +..+ ....+..+++.+||.+..++.. +
T Consensus 114 ~-~tv~eni~~~~~~~~~~-------------------~~~~--------------~~~~~~~~l~~~~l~~~~~~~l-~ 158 (276)
T PRK14271 114 P-MSIMDNVLAGVRAHKLV-------------------PRKE--------------FRGVAQARLTEVGLWDAVKDRL-S 158 (276)
T ss_pred C-ccHHHHHHHHHHhccCC-------------------CHHH--------------HHHHHHHHHHHcCCCchhhhHh-h
Confidence 7 79999998764221100 0000 0012345678888865332221 1
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
..++.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.++||++++|
T Consensus 159 ~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~dri~~l 235 (276)
T PRK14271 159 DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNL-AQAARISDRAALF 235 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 23456999999999999999999999999999999999999999999999875 47888877654 5788899999999
Q ss_pred cCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHH
Q 003389 418 SEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQE 454 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~ 454 (824)
++|++++.|+++++.+ .|.+...++|+-+
T Consensus 236 ~~G~i~~~g~~~~~~~--------~~~~~~~~~~~~~ 264 (276)
T PRK14271 236 FDGRLVEEGPTEQLFS--------SPKHAETARYVAG 264 (276)
T ss_pred ECCEEEEeCCHHHHHh--------CcCcHHHHHHHhh
Confidence 9999999999887742 3444445555544
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=315.16 Aligned_cols=205 Identities=22% Similarity=0.339 Sum_probs=159.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|. +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~- 91 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG- 91 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-
Confidence 35999999999999999999999999999999999999886 999999998775432 24569999999877765
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc--CCCccccccccCc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~ 338 (824)
||+||+.+...... . .+....++. ...+..++.+ |++...+..
T Consensus 92 tv~~~~~~~~~~~~---~-------------------~~~~~~~~~---------~~l~~~~~~~~~~~~~~~~~~---- 136 (229)
T cd03254 92 TIMENIRLGRPNAT---D-------------------EEVIEAAKE---------AGAHDFIMKLPNGYDTVLGEN---- 136 (229)
T ss_pred HHHHHHhccCCCCC---H-------------------HHHHHHHHH---------hChHHHHHhCcccccCHhhcC----
Confidence 99999987532100 0 000000000 0112233333 444333333
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
++.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++. .+.|+|+++|++. ++ ..||++++|+
T Consensus 137 -~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~-~~-~~~d~i~~l~ 211 (229)
T cd03254 137 -GGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM--KGRTSIIIAHRLS-TI-KNADKILVLD 211 (229)
T ss_pred -CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEecCHH-HH-hhCCEEEEEe
Confidence 45699999999999999999999999999999999999999999999985 3789999887764 44 4699999999
Q ss_pred CCeEEEecChhhHH
Q 003389 419 EGQIVYQGPRDNVL 432 (824)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (824)
+|++++.|+.+++.
T Consensus 212 ~g~~~~~~~~~~~~ 225 (229)
T cd03254 212 DGKIIEEGTHDELL 225 (229)
T ss_pred CCeEEEeCCHHHHH
Confidence 99999999877654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=321.02 Aligned_cols=207 Identities=20% Similarity=0.314 Sum_probs=164.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCC--CcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR--ASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~--~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+++|+|+|++|++||+++|+|+||||||||+++|+|+++++.. .+|+|.++|+++... ..++.++|++|++.+
T Consensus 20 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 99 (259)
T PRK14260 20 SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNP 99 (259)
T ss_pred eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccccc
Confidence 4599999999999999999999999999999999999875311 389999999887431 123569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC----cccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (824)
++ +||+||+.++...++. .++.+. ...++.+++.+|+. +..+
T Consensus 100 ~~-~tv~enl~~~~~~~~~-------------------~~~~~~--------------~~~~~~~l~~~~l~~~l~~~~~ 145 (259)
T PRK14260 100 FP-MSIYENVAYGVRISAK-------------------LPQADL--------------DEIVESALKGAALWQEVKDKLN 145 (259)
T ss_pred CC-ccHHHHHHHHHHHhcC-------------------CCHHHH--------------HHHHHHHHHHcCCcchhhhHhc
Confidence 87 8999999876432210 000000 11234566777773 2334
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+. ++.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|+|++.|+ .+++.++||
T Consensus 146 ~~-----~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~-~~~i~~~~d 217 (259)
T PRK14260 146 KS-----ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHN-MQQATRVSD 217 (259)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCC-HHHHHHhcC
Confidence 43 446999999999999999999999999999999999999999999999864 5788887765 457889999
Q ss_pred eEEEEc-----CCeEEEecChhhHH
Q 003389 413 DIILLS-----EGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~-----~G~iv~~G~~~~~~ 432 (824)
++++|+ +|+++++|+++++.
T Consensus 218 ~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 218 FTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred eEEEEeccCCCCceEEEeCCHHHHh
Confidence 999998 59999999998863
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=353.83 Aligned_cols=211 Identities=25% Similarity=0.282 Sum_probs=173.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+++|+||||+|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 46999999999999999999999999999999999999887 9999999998764322 2469999999989999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.++....... ... ...... +....++++++.+||.+..++.+++
T Consensus 95 ~tv~e~l~~~~~~~~~~--~~~-~~~~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~-- 145 (510)
T PRK09700 95 LTVLENLYIGRHLTKKV--CGV-NIIDWR------------------------EMRVRAAMMLLRVGLKVDLDEKVAN-- 145 (510)
T ss_pred CcHHHHhhhcccccccc--ccc-cccCHH------------------------HHHHHHHHHHHHcCCCCCcccchhh--
Confidence 99999998753210000 000 000000 0112356789999999888877764
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|++.|+ ..++.++||++++|++
T Consensus 146 ---LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd-~~~~~~~~d~v~~l~~ 220 (510)
T PRK09700 146 ---LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHK-LAEIRRICDRYTVMKD 220 (510)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999976 48888887654 5578889999999999
Q ss_pred CeEEEecChhhH
Q 003389 420 GQIVYQGPRDNV 431 (824)
Q Consensus 420 G~iv~~G~~~~~ 431 (824)
|++++.|+++++
T Consensus 221 G~i~~~g~~~~~ 232 (510)
T PRK09700 221 GSSVCSGMVSDV 232 (510)
T ss_pred CEEeeecchhhC
Confidence 999999998765
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=318.46 Aligned_cols=200 Identities=27% Similarity=0.405 Sum_probs=166.8
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCCCH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~lTV 262 (824)
+|+|||++|++|++++|+||||||||||+++|+|+++ . +|+|.++|+++..... ++.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 7999999999999999999999999999999999974 3 8999999998764332 3468999999888888999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.+.... +.. .. + ....++++++.+||.+..++.++ .
T Consensus 87 ~~nl~~~~~~-~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 126 (248)
T PRK03695 87 FQYLTLHQPD-KTR----------TE----------A--------------VASALNEVAEALGLDDKLGRSVN-----Q 126 (248)
T ss_pred HHHHHhcCcc-CCC----------cH----------H--------------HHHHHHHHHHHcCCHhHhcCCcc-----c
Confidence 9999875321 000 00 0 01134668889999877777665 4
Q ss_pred CCHHHHHHHHHHHHHHc-------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 343 ISGGQKKRVTTGEMLVG-------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~-------~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
|||||||||+||++|+. +|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|+. .++.++||+++
T Consensus 127 LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~ 204 (248)
T PRK03695 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDL-NHTLRHADRVW 204 (248)
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEE
Confidence 99999999999999997 6799999999999999999999999999975 478888877654 47889999999
Q ss_pred EEcCCeEEEecChhhH
Q 003389 416 LLSEGQIVYQGPRDNV 431 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~ 431 (824)
+|++|++++.|+.+++
T Consensus 205 ~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 205 LLKQGKLLASGRRDEV 220 (248)
T ss_pred EEECCEEEEECCHHHH
Confidence 9999999999998765
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=318.60 Aligned_cols=211 Identities=20% Similarity=0.294 Sum_probs=164.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++||+++|+||||||||||+++|+|+.++. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 98 (253)
T PRK14261 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNP 98 (253)
T ss_pred eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCcc
Confidence 46999999999999999999999999999999999987632 11389999999987542 123569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++. ||+||+.|..+..+... ..+. ...+..+++.++|.+...+..
T Consensus 99 ~~~-tv~eni~~~~~~~~~~~-------------------~~~~--------------~~~~~~~l~~~~l~~~l~~~~- 143 (253)
T PRK14261 99 FPK-SIYENVAYGPRIHGEKN-------------------KKTL--------------DTIVEKSLKGAALWDEVKDRL- 143 (253)
T ss_pred Ccc-cHHHHHHhhHHhcCCCC-------------------HHHH--------------HHHHHHHHHHhcCchhhHHHh-
Confidence 875 99999998754321100 0000 012344667777643211111
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+...+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++.|++ .++.++||++++
T Consensus 144 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~-~~~~~~~d~v~~ 220 (253)
T PRK14261 144 HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNM-QQAARVSDYTGF 220 (253)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCH-HHHHhhCCEEEE
Confidence 123446999999999999999999999999999999999999999999999975 57888877654 467789999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|+++..|+.+++.
T Consensus 221 l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 221 MYLGKLIEFDKTTQIF 236 (253)
T ss_pred EECCEEEEcCCHHHHH
Confidence 9999999999988763
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=315.73 Aligned_cols=199 Identities=22% Similarity=0.354 Sum_probs=162.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++....+ ++.++|++|++.+++ .
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~ 95 (225)
T PRK10247 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-D 95 (225)
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEcCcCCHHHHHhccEEEeccccccc-c
Confidence 46999999999999999999999999999999999999887 9999999988754322 357999999988776 4
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccccccCcc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEM 339 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~ 339 (824)
||+||+.+.....+.. . ....++.+++.+||. ...++.++
T Consensus 96 tv~enl~~~~~~~~~~----------------------~--------------~~~~~~~~l~~~~l~~~~~~~~~~--- 136 (225)
T PRK10247 96 TVYDNLIFPWQIRNQQ----------------------P--------------DPAIFLDDLERFALPDTILTKNIA--- 136 (225)
T ss_pred cHHHHHHhHHhhcCCC----------------------h--------------HHHHHHHHHHHcCCChHHhcCCcc---
Confidence 9999998753321100 0 001245678899995 45666655
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc-
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS- 418 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~- 418 (824)
.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++..+.|+|++.|++. ++ ..||++++|+
T Consensus 137 --~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~ 212 (225)
T PRK10247 137 --ELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQP 212 (225)
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEec
Confidence 599999999999999999999999999999999999999999999998755788888877654 45 4699999994
Q ss_pred CCeEEEecChh
Q 003389 419 EGQIVYQGPRD 429 (824)
Q Consensus 419 ~G~iv~~G~~~ 429 (824)
++..+.+|.++
T Consensus 213 ~~~~~~~~~~~ 223 (225)
T PRK10247 213 HAGEMQEARYE 223 (225)
T ss_pred ccchHhhhhhc
Confidence 56666777654
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=316.28 Aligned_cols=206 Identities=25% Similarity=0.353 Sum_probs=160.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++ .
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-G 91 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-h
Confidence 46999999999999999999999999999999999999887 9999999987653221 356999999987765 6
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc--CCCccccccccCc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~ 338 (824)
||+||+.+...... . .+ .+ +.... ......++.+ ++....+..
T Consensus 92 tv~e~l~~~~~~~~---~----~~---------------~~---~~~~~------~~~~~~~~~l~~~~~~~~~~~---- 136 (238)
T cd03249 92 TIAENIRYGKPDAT---D----EE---------------VE---EAAKK------ANIHDFIMSLPDGYDTLVGER---- 136 (238)
T ss_pred hHHHHhhccCCCCC---H----HH---------------HH---HHHHH------cChHHHHHhhccccceeeccC----
Confidence 99999987532110 0 00 00 00000 0012233333 444334433
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .++|+|++.|++. ++. .||++++|+
T Consensus 137 -~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~-~~~-~~d~v~~l~ 211 (238)
T cd03249 137 -GSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLS-TIR-NADLIAVLQ 211 (238)
T ss_pred -CccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHH-HHh-hCCEEEEEE
Confidence 35699999999999999999999999999999999999999999999986 4789888877654 554 899999999
Q ss_pred CCeEEEecChhhHHH
Q 003389 419 EGQIVYQGPRDNVLE 433 (824)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (824)
+|++++.|+.+++.+
T Consensus 212 ~G~i~~~~~~~~~~~ 226 (238)
T cd03249 212 NGQVVEQGTHDELMA 226 (238)
T ss_pred CCEEEEeCCHHHHhh
Confidence 999999999877654
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=384.59 Aligned_cols=257 Identities=20% Similarity=0.252 Sum_probs=200.0
Q ss_pred hhHHHHHHHHHHHhccChHHHHHHHhhhccccCC-C-CCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcc
Q 003389 98 QDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGI-E-IPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLH 175 (824)
Q Consensus 98 ~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~-~-~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 175 (824)
+.....+||+.+..+.++|.... ..+.... . +....++|+|+++.+..
T Consensus 1200 e~~~~sveRi~e~~~~~~E~~~~----~~~~~~~~~wp~~g~I~f~nVsf~Y~~-------------------------- 1249 (1622)
T PLN03130 1200 ENSLNAVERVGTYIDLPSEAPLV----IENNRPPPGWPSSGSIKFEDVVLRYRP-------------------------- 1249 (1622)
T ss_pred HHHHHHHHHHHHHhCCCCccccc----ccCCCCCCCCCCCCcEEEEEEEEEeCC--------------------------
Confidence 45667788888887766552100 0000011 1 11346899999876521
Q ss_pred cccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEec
Q 003389 176 LVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQ 252 (824)
Q Consensus 176 ~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q 252 (824)
+..++|+|||++|+|||.+||+|++|||||||+++|.|+++|+ +|+|.+||.++.+... ++.+++|+|
T Consensus 1250 ------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l~~LR~~IsiVpQ 1320 (1622)
T PLN03130 1250 ------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGLMDLRKVLGIIPQ 1320 (1622)
T ss_pred ------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCHHHHHhccEEECC
Confidence 1235999999999999999999999999999999999999997 9999999999987643 578999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccc
Q 003389 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d 332 (824)
++.+|.. ||||||++... .+.+++++++...+.+. . +-.|+...|
T Consensus 1321 dp~LF~G-TIreNLd~~~~--------------------------~tdeei~~Al~~a~l~~------~--I~~lp~GLd 1365 (1622)
T PLN03130 1321 APVLFSG-TVRFNLDPFNE--------------------------HNDADLWESLERAHLKD------V--IRRNSLGLD 1365 (1622)
T ss_pred CCccccc-cHHHHhCcCCC--------------------------CCHHHHHHHHHHcCcHH------H--HHhCccccC
Confidence 9888865 99999976410 12234455554443322 1 224677889
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
|.||+ .+..||||||||++|||||+++|+||+||||||+||+.|...|.+.|++..+ ++|+|++.|.. ++...||
T Consensus 1366 t~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~--~~TvI~IAHRL--~tI~~~D 1440 (1622)
T PLN03130 1366 AEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRL--NTIIDCD 1440 (1622)
T ss_pred ccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEeCCh--HHHHhCC
Confidence 99996 4556999999999999999999999999999999999999999999999753 78998887765 4667799
Q ss_pred eEEEEcCCeEEEecChhhHHH
Q 003389 413 DIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~~ 433 (824)
+|++|++|+|+++|+++++++
T Consensus 1441 rIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1441 RILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred EEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999874
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=323.98 Aligned_cols=206 Identities=24% Similarity=0.351 Sum_probs=165.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCC--CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH--GEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~--~~lT 261 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.....++.++|++|++.+. ...+
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~ 96 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA---SGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVL 96 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEhHHhhccceEEEeccccccccCCCcc
Confidence 46999999999999999999999999999999999999987 999999998875432234699999987542 2347
Q ss_pred HHHHHHHhhhhc-CCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 262 VRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 262 V~E~L~f~a~~~-~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
++|++.++.... +... .+..+ ....++++++.+||.+..++.+++
T Consensus 97 ~~~~i~~~~~~~~~~~~-----------------~~~~~--------------~~~~~~~~l~~~gl~~~~~~~~~~--- 142 (272)
T PRK15056 97 VEDVVMMGRYGHMGWLR-----------------RAKKR--------------DRQIVTAALARVDMVEFRHRQIGE--- 142 (272)
T ss_pred hhhheeccccccccccc-----------------CCCHH--------------HHHHHHHHHHHcCChhHhcCCccc---
Confidence 899886542100 0000 00000 011345678899998888887764
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .+.|+|++.|++ .++.++||+++++ +|
T Consensus 143 --LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~tviivsH~~-~~~~~~~d~v~~~-~G 217 (272)
T PRK15056 143 --LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNL-GSVTEFCDYTVMV-KG 217 (272)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEE-CC
Confidence 999999999999999999999999999999999999999999999976 478888876654 4778899999887 89
Q ss_pred eEEEecChhhH
Q 003389 421 QIVYQGPRDNV 431 (824)
Q Consensus 421 ~iv~~G~~~~~ 431 (824)
++++.|+++++
T Consensus 218 ~i~~~g~~~~~ 228 (272)
T PRK15056 218 TVLASGPTETT 228 (272)
T ss_pred EEEeecCHHhc
Confidence 99999998765
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=384.30 Aligned_cols=258 Identities=21% Similarity=0.246 Sum_probs=198.7
Q ss_pred hhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCC-cEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 98 QDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIP-KIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 98 ~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p-~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
+.....+||+.+..+.++|.... .+ ........| ..+++|+|+++.+..
T Consensus 1197 ~~~~~s~eRi~e~~~~~~e~~~~--~~-~~~~~~~~p~~g~I~f~nVsf~Y~~--------------------------- 1246 (1495)
T PLN03232 1197 ENSLNSVERVGNYIDLPSEATAI--IE-NNRPVSGWPSRGSIKFEDVHLRYRP--------------------------- 1246 (1495)
T ss_pred HHHHHHHHHHHHHhcCCcccccc--cc-CCCCCCCCCCCCcEEEEEEEEEECC---------------------------
Confidence 34566778888888766652100 00 000000112 346889999876521
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
+..++|+|||++|+|||.+||+||||||||||+++|.|+++|+ +|+|.+||.++.+... ++.++||+|+
T Consensus 1247 -----~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~~lR~~i~iVpQd 1318 (1495)
T PLN03232 1247 -----GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLTDLRRVLSIIPQS 1318 (1495)
T ss_pred -----CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHHHHHhhcEEECCC
Confidence 1245999999999999999999999999999999999999997 9999999999877543 5789999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+|+. ||||||++... .+.+++++++...+.+. . .-.+++..||
T Consensus 1319 p~LF~g-TIr~NL~~~~~--------------------------~sdeei~~al~~a~l~~------~--I~~lp~GLdt 1363 (1495)
T PLN03232 1319 PVLFSG-TVRFNIDPFSE--------------------------HNDADLWEALERAHIKD------V--IDRNPFGLDA 1363 (1495)
T ss_pred CeeeCc-cHHHHcCCCCC--------------------------CCHHHHHHHHHHcCCHH------H--HHhCcCCCCc
Confidence 888865 99999976410 11233444444333222 1 2246677899
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.||+ .+..||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. .++|+|++.|+. ++...||+
T Consensus 1364 ~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl--~ti~~~Dr 1438 (1495)
T PLN03232 1364 EVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRL--NTIIDCDK 1438 (1495)
T ss_pred eecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCH--HHHHhCCE
Confidence 9986 455699999999999999999999999999999999999999999999875 378999887765 56677999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|+++++|+++++++
T Consensus 1439 IlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1439 ILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999863
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=322.45 Aligned_cols=206 Identities=17% Similarity=0.327 Sum_probs=160.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++|++++|+|+|||||||||++|+|+++ |....+|+|.++|+++... ..++.++|++|++.+
T Consensus 37 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 116 (271)
T PRK14238 37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNP 116 (271)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcc
Confidence 459999999999999999999999999999999999987 2112499999999887421 124679999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCC----Ccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL----DICAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL----~~~~d 332 (824)
++ .||+||+.++.+..+.... ... ...+..+++.+++ .+..+
T Consensus 117 ~~-~tv~eni~~~~~~~~~~~~-------------------~~~--------------~~~~~~~l~~~~~~~~l~~~~~ 162 (271)
T PRK14238 117 FP-KSIYDNVTYGPKIHGIKDK-------------------KTL--------------DEIVEKSLRGAAIWDELKDRLH 162 (271)
T ss_pred cc-ccHHHHHHHHHHhcCCCcH-------------------HHH--------------HHHHHHHHHHcCCcchHHHHHh
Confidence 77 4999999886432211000 000 0112334555543 22233
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
.. ++.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ +.|+|++.|+ ..++.++||
T Consensus 163 ~~-----~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~-~~~i~~~~d 234 (271)
T PRK14238 163 DN-----AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHN-MQQAARISD 234 (271)
T ss_pred cC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcC-HHHHHHhCC
Confidence 33 456999999999999999999999999999999999999999999999864 5788887665 446788999
Q ss_pred eEEEEcCCeEEEecChhhH
Q 003389 413 DIILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~ 431 (824)
++++|++|++++.|+++++
T Consensus 235 ~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 235 KTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999998876
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=351.07 Aligned_cols=221 Identities=22% Similarity=0.303 Sum_probs=177.0
Q ss_pred HhhhcccccCcc----------cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccC
Q 003389 170 ALGLLHLVPSKK----------RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239 (824)
Q Consensus 170 ~l~~~~~~~~~~----------~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~ 239 (824)
++++.++...+. +.+.+|+|||++|++|++++|+||||||||||+|+|+|+++ . +|+|+++|+++.
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~i~ 350 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQPLH 350 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEEcc
Confidence 355566654442 13569999999999999999999999999999999999984 4 899999998875
Q ss_pred CCCC------CceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhc
Q 003389 240 EFVP------QRTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAG 311 (824)
Q Consensus 240 ~~~~------~~~i~yv~Q~d--~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~ 311 (824)
.... ++.++|++|+. .+++.+||.||+.++....+.. ..+.
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~--------~~~~----------------------- 399 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPT--------LSAA----------------------- 399 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhcccc--------CChH-----------------------
Confidence 4321 35699999986 4788899999998864321100 0000
Q ss_pred cchhhhHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 003389 312 QETSLVTDYVLKILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (824)
Q Consensus 312 ~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~ 390 (824)
+....++++|+.+||+ ...++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++
T Consensus 400 -~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 473 (529)
T PRK15134 400 -QREQQVIAVMEEVGLDPETRHRYPA-----EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQ 473 (529)
T ss_pred -HHHHHHHHHHHHcCCCHHHHhcCCc-----cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHH
Confidence 0012356688999997 46777665 4999999999999999999999999999999999999999999999987
Q ss_pred hCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhHH
Q 003389 391 ILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 391 ~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
..++|+|+++| ...++.++||++++|++|+++..|+++++.
T Consensus 474 ~~~~tvi~vsH-d~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 474 KHQLAYLFISH-DLHVVRALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred hhCCEEEEEeC-CHHHHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence 55788888765 456788899999999999999999988773
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=314.13 Aligned_cols=196 Identities=27% Similarity=0.436 Sum_probs=171.8
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-----C--CCceEEEEecCCCCCCCCC
Q 003389 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----V--PQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 189 ~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-----~--~~~~i~yv~Q~d~~~~~lT 261 (824)
++++.++.-.+|||-|+||||||||+|+|+|+.+|+ +|.|.+||..+... . .+|.+||||||-.+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 678888776899999999999999999999999998 99999999866321 1 2588999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+.||.|+...- .....+++.+.||++|..+.++.
T Consensus 93 VrgNL~YG~~~~----------------------------------------~~~~fd~iv~lLGI~hLL~R~P~----- 127 (352)
T COG4148 93 VRGNLRYGMWKS----------------------------------------MRAQFDQLVALLGIEHLLDRYPG----- 127 (352)
T ss_pred Eecchhhhhccc----------------------------------------chHhHHHHHHHhCcHHHHhhCCC-----
Confidence 999999975321 00124668889999999998776
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||+|||||++.|++|+||||.+.||-..+.+|+-.|.+++++.+.-|+.++| -..|+.+++|+|++|++|+
T Consensus 128 ~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSH-S~~Ev~RLAd~vV~le~Gk 206 (352)
T COG4148 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSH-SLDEVLRLADRVVVLENGK 206 (352)
T ss_pred ccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEec-CHHHHHhhhheEEEecCCe
Confidence 499999999999999999999999999999999999999999999999988888888765 4569999999999999999
Q ss_pred EEEecChhhHHH
Q 003389 422 IVYQGPRDNVLE 433 (824)
Q Consensus 422 iv~~G~~~~~~~ 433 (824)
+...|+.+++.+
T Consensus 207 V~A~g~~e~v~~ 218 (352)
T COG4148 207 VKASGPLEEVWG 218 (352)
T ss_pred EEecCcHHHHhc
Confidence 999999998853
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=305.69 Aligned_cols=170 Identities=39% Similarity=0.679 Sum_probs=149.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
+++|+|+|+++++|++++|+|||||||||||++|+|+.. |+ +|+|.++|+++. ...++.++|++|++.+++.+|
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~---~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~t 95 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLT 95 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCc---ceEEEECCEehH-HHhhhceEEecccCccccCCc
Confidence 469999999999999999999999999999999999863 44 999999999875 223467999999998999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.++.. ++
T Consensus 96 v~~~l~~~~~--------------------------------------------------~~------------------ 107 (192)
T cd03232 96 VREALRFSAL--------------------------------------------------LR------------------ 107 (192)
T ss_pred HHHHHHHHHH--------------------------------------------------Hh------------------
Confidence 9999976410 00
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC-C
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE-G 420 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~-G 420 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .++|+|+++|++..++.+.||++++|++ |
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g 186 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGG 186 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCC
Confidence 3999999999999999999999999999999999999999999999876 4889999888865457788999999999 9
Q ss_pred eEEEec
Q 003389 421 QIVYQG 426 (824)
Q Consensus 421 ~iv~~G 426 (824)
++++.|
T Consensus 187 ~i~~~g 192 (192)
T cd03232 187 KTVYFG 192 (192)
T ss_pred eEEeCC
Confidence 999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=312.63 Aligned_cols=211 Identities=21% Similarity=0.311 Sum_probs=165.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|+.+ |....+|+|.+||+++... ..++.++|++|++.+
T Consensus 16 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14266 16 AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNP 95 (250)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCcc
Confidence 459999999999999999999999999999999999865 2112389999999987531 124679999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++. ||.||+.+.....+...+ + . ....+.++++.+||........
T Consensus 96 ~~~-t~~~nl~~~~~~~~~~~~----------~---------~--------------~~~~~~~~l~~~~l~~~l~~~~- 140 (250)
T PRK14266 96 FPK-SIFDNVAYGLRIHGEDDE----------D---------F--------------IEERVEESLKAAALWDEVKDKL- 140 (250)
T ss_pred Ccc-hHHHHHHhHHhhcCCCCH----------H---------H--------------HHHHHHHHHHHcCCchhHHHHH-
Confidence 875 999999876432211000 0 0 0112455677777743221111
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+...+.||||||||++||++|+.+|++|+|||||+|||..+...+.+.|+++++ +.|+|++.|++ .++.+.+|++++
T Consensus 141 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiii~sh~~-~~~~~~~~~i~~ 217 (250)
T PRK14266 141 DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE--DYTIVIVTHNM-QQATRVSKYTSF 217 (250)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEECCH-HHHHhhcCEEEE
Confidence 233456999999999999999999999999999999999999999999999953 67888887665 478889999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|+++++|+++++.
T Consensus 218 l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 218 FLNGEIIESGLTDQIF 233 (250)
T ss_pred EECCeEEEeCCHHHHH
Confidence 9999999999988763
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=320.02 Aligned_cols=205 Identities=19% Similarity=0.304 Sum_probs=161.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCC--C---CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNE--F---VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~--~---~~~~~i~yv~Q~d~~ 256 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|++++. ...+|+|.++|+++.. . ..++.++|++|++.+
T Consensus 23 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 102 (264)
T PRK14243 23 FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNP 102 (264)
T ss_pred EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcc
Confidence 46999999999999999999999999999999999997631 1248999999988742 1 124569999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc----ccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (824)
++ .||.||+.+.....+.. .+ . ...++.+++.+++.+ ..+
T Consensus 103 ~~-~tv~enl~~~~~~~~~~------~~---------------~--------------~~~~~~~l~~~~l~~~l~~~~~ 146 (264)
T PRK14243 103 FP-KSIYDNIAYGARINGYK------GD---------------M--------------DELVERSLRQAALWDEVKDKLK 146 (264)
T ss_pred cc-ccHHHHHHhhhhhcCcc------hH---------------H--------------HHHHHHHHHHhCchhhHHHHhc
Confidence 77 49999998864322110 00 0 001233455555532 223
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
.. ++.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|+ .+++.++||
T Consensus 147 ~~-----~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~-~~~~~~~~d 218 (264)
T PRK14243 147 QS-----GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHN-MQQAARVSD 218 (264)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecC-HHHHHHhCC
Confidence 33 446999999999999999999999999999999999999999999999975 4788887655 558889999
Q ss_pred eEEEEc---------CCeEEEecChhhHH
Q 003389 413 DIILLS---------EGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~---------~G~iv~~G~~~~~~ 432 (824)
++++|+ +|++++.|+++++.
T Consensus 219 ~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 219 MTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred EEEEEecccccccccCceEEEeCCHHHHH
Confidence 999998 89999999998874
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=339.49 Aligned_cols=209 Identities=28% Similarity=0.373 Sum_probs=175.7
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-----CCCceEEEEecCC--C
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----VPQRTCAYISQHD--L 255 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d--~ 255 (824)
...+++||||.|++||+++|+|+||||||||.++|+|+++|+ +|+|.++|.+.+.. ..++.+-+|+||+ .
T Consensus 303 ~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~S 379 (539)
T COG1123 303 EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSS 379 (539)
T ss_pred ceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcccccccchhhhhhhheEEEEeCcccc
Confidence 356899999999999999999999999999999999999997 99999999873211 1135788888886 6
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (824)
+.|.+||+++|.-.....+.... .+...+++++|+..||+.. .
T Consensus 380 LnPr~tV~~~i~epL~~~~~~~~---------------------------------~~~~~rv~~ll~~VgL~~~----~ 422 (539)
T COG1123 380 LNPRMTVGDILAEPLRIHGGGSG---------------------------------AERRARVAELLELVGLPPE----F 422 (539)
T ss_pred cCccccHHHHHHhHHhhhcccch---------------------------------HHHHHHHHHHHHHcCCCHH----H
Confidence 78999999999887654432110 0112257789999999842 2
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
.+.++++||||||||++|||||+.+|++|++|||||.||+.++.+|+++|+++.++.|.|.+++. |+..-+..+||||+
T Consensus 423 l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfIS-HDl~vV~~i~drv~ 501 (539)
T COG1123 423 LDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFIS-HDLAVVRYIADRVA 501 (539)
T ss_pred HhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEe-CCHHHHHhhCceEE
Confidence 33455679999999999999999999999999999999999999999999999998899988865 66778999999999
Q ss_pred EEcCCeEEEecChhhHH
Q 003389 416 LLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (824)
||++|+||+.||.+++.
T Consensus 502 vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 502 VMYDGRIVEEGPTEKVF 518 (539)
T ss_pred EEECCeEEEeCCHHHHh
Confidence 99999999999998884
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=322.69 Aligned_cols=204 Identities=20% Similarity=0.312 Sum_probs=163.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~--~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|++++.. ..+|+|.++|.++... ..++.++|++|+..+
T Consensus 52 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (285)
T PRK14254 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNP 131 (285)
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 459999999999999999999999999999999999986310 1399999999886431 124679999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc----ccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (824)
++. ||.||+.+.....+.. .+ ....++.+++.+||.. ..+
T Consensus 132 ~~~-tv~enl~~~~~~~~~~---------------------~~--------------~~~~~~~~l~~~~l~~~i~~~~~ 175 (285)
T PRK14254 132 FPK-SIYDNVAYGLKIQGYD---------------------GD--------------IDERVEESLRRAALWDEVKDQLD 175 (285)
T ss_pred CcC-CHHHHHHHHHHHcCCc---------------------HH--------------HHHHHHHHHHHcCCCchhHHHHh
Confidence 775 9999998864332210 00 0112456778888753 334
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
..+ ..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++++ +.|+|++.|+ ..++.++||
T Consensus 176 ~~~-----~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~-~~~i~~~~d 247 (285)
T PRK14254 176 SSG-----LDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHN-MQQAARISD 247 (285)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCC-HHHHHhhcC
Confidence 444 46999999999999999999999999999999999999999999999975 4688887665 457788999
Q ss_pred eEE-EEcCCeEEEecChhhH
Q 003389 413 DII-LLSEGQIVYQGPRDNV 431 (824)
Q Consensus 413 ~ii-lL~~G~iv~~G~~~~~ 431 (824)
+++ +|++|+++..|+.+++
T Consensus 248 ri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 248 KTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred EEEEEeeCCEEEEeCCHHHH
Confidence 975 6799999999998775
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=312.67 Aligned_cols=205 Identities=25% Similarity=0.359 Sum_probs=158.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|. +|+|.+||.++.... .++.++|++|+..+++ .
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 89 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-D 89 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-c
Confidence 45999999999999999999999999999999999999887 999999998875432 1356999999987775 6
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc--CCCccccccccCc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~ 338 (824)
||+||+.+..... .. .+... ..... .....++.+ |++...+.
T Consensus 90 tv~~nl~~~~~~~--~~--------------------~~~~~---~~~~~------~l~~~~~~l~~~~~~~~~~----- 133 (236)
T cd03253 90 TIGYNIRYGRPDA--TD--------------------EEVIE---AAKAA------QIHDKIMRFPDGYDTIVGE----- 133 (236)
T ss_pred hHHHHHhhcCCCC--CH--------------------HHHHH---HHHHc------CcHHHHHhccccccchhhc-----
Confidence 9999998753210 00 00000 00000 012223333 33333332
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
..+.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ +.|+|++.|++. ++. .||++++|+
T Consensus 134 ~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sh~~~-~~~-~~d~~~~l~ 209 (236)
T cd03253 134 RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLS-TIV-NADKIIVLK 209 (236)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHH-HHH-hCCEEEEEE
Confidence 2456999999999999999999999999999999999999999999999864 789888877664 454 599999999
Q ss_pred CCeEEEecChhhHH
Q 003389 419 EGQIVYQGPRDNVL 432 (824)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (824)
+|++++.|+.+++.
T Consensus 210 ~g~i~~~~~~~~~~ 223 (236)
T cd03253 210 DGRIVERGTHEELL 223 (236)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999877654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=319.34 Aligned_cols=199 Identities=25% Similarity=0.265 Sum_probs=161.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
..+|+|||++|++||+++|+||||||||||+++|+|+++ . +|+|.++|.++.... .++.++|++|++.+++ .
T Consensus 17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~-~ 91 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS-G 91 (275)
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHHHhhhEEEECCCcccch-h
Confidence 358999999999999999999999999999999999986 4 899999999876432 2467999999998887 4
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-------ccccc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-------ICADT 333 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-------~~~dt 333 (824)
||+||+...... . .++ +.+.++.+||. ...++
T Consensus 92 tv~~nl~~~~~~---~-----------------------~~~---------------~~~~l~~~gL~~~~~~~p~~l~~ 130 (275)
T cd03289 92 TFRKNLDPYGKW---S-----------------------DEE---------------IWKVAEEVGLKSVIEQFPGQLDF 130 (275)
T ss_pred hHHHHhhhccCC---C-----------------------HHH---------------HHHHHHHcCCHHHHHhCcccccc
Confidence 999999642110 0 001 11233344443 34455
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+++ ....||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++. .++|+|++.|++ ..+ ..||+
T Consensus 131 ~~~~-~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~-~~i-~~~dr 205 (275)
T cd03289 131 VLVD-GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRI-EAM-LECQR 205 (275)
T ss_pred eecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCH-HHH-HhCCE
Confidence 5654 456799999999999999999999999999999999999999999999874 378988887765 444 45999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|++++.|+++++..
T Consensus 206 i~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 206 FLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EEEecCCeEeecCCHHHHhh
Confidence 99999999999999999864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=314.35 Aligned_cols=212 Identities=21% Similarity=0.290 Sum_probs=166.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC--cCCCCCCcceEeeCCcccCCCCC---Cc-eEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK--LGKDLRASGKITYCGHELNEFVP---QR-TCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~--l~~~~~~sG~I~~nG~~~~~~~~---~~-~i~yv~Q~d~~~ 257 (824)
+.+|+|||++|++||+++|+||||||||||+++|+|+ ++|. +|+|.++|.++....+ .+ .++|++|++.++
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~ 96 (252)
T CHL00131 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL---EGDILFKGESILDLEPEERAHLGIFLAFQYPIEI 96 (252)
T ss_pred EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC---CceEEECCEEcccCChhhhheeeEEEEecccccc
Confidence 4599999999999999999999999999999999998 4565 9999999998765332 12 478999999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccccc
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 336 (824)
+.+|+.+++.+........ ... ++.+..+ ....+.++++.+||. ...++.++
T Consensus 97 ~~~~~~~~l~~~~~~~~~~---------------~~~-~~~~~~~-----------~~~~~~~~l~~~~l~~~~~~~~~~ 149 (252)
T CHL00131 97 PGVSNADFLRLAYNSKRKF---------------QGL-PELDPLE-----------FLEIINEKLKLVGMDPSFLSRNVN 149 (252)
T ss_pred ccccHHHHHHHhhhhhhcc---------------ccc-ccccHHH-----------HHHHHHHHHHHcCCchhhhccccc
Confidence 9999999998753211000 000 0000000 011345678899997 35555553
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh-cCeEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-FDDII 415 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l-fD~ii 415 (824)
..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .++|+|+++|++. .+... ||+++
T Consensus 150 ----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~-~~~~~~~d~i~ 223 (252)
T CHL00131 150 ----EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQR-LLDYIKPDYVH 223 (252)
T ss_pred ----cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HHHhhhCCEEE
Confidence 14999999999999999999999999999999999999999999999875 4789988877644 45555 89999
Q ss_pred EEcCCeEEEecChhhH
Q 003389 416 LLSEGQIVYQGPRDNV 431 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~ 431 (824)
+|++|++++.|+++.+
T Consensus 224 ~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 224 VMQNGKIIKTGDAELA 239 (252)
T ss_pred EEeCCEEEEecChhhh
Confidence 9999999999998843
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=383.64 Aligned_cols=222 Identities=25% Similarity=0.352 Sum_probs=188.8
Q ss_pred hhhcccccCccc-ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--CCCceE
Q 003389 171 LGLLHLVPSKKR-SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTC 247 (824)
Q Consensus 171 l~~~~~~~~~~~-~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~i 247 (824)
+.+.++.+.+++ ++.+|+|||+.|++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++... ..++.+
T Consensus 1938 L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---sG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1938 LRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred EEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECcchHHHHhhhE
Confidence 445555554443 357999999999999999999999999999999999999997 99999999987531 124679
Q ss_pred EEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCC
Q 003389 248 AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (824)
Q Consensus 248 ~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL 327 (824)
||++|++.+++.+||+|+|.+.++.++.... + ....++++|+.+||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~--------------------~--------------~~~~v~~lLe~lgL 2060 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAE--------------------E--------------IEKVANWSIQSLGL 2060 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHH--------------------H--------------HHHHHHHHHHHcCC
Confidence 9999999999999999999987766543110 0 01235678999999
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhH
Q 003389 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (824)
Q Consensus 328 ~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~ 407 (824)
.+.+|+.+++ |||||||||+||+||+++|++|||||||+|||+.++..+.+.|++++++ |+|+|++.| ..+++
T Consensus 2061 ~~~~dk~~~~-----LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH-~mee~ 2133 (2272)
T TIGR01257 2061 SLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSH-SMEEC 2133 (2272)
T ss_pred HHHhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeC-CHHHH
Confidence 9988888765 9999999999999999999999999999999999999999999999764 888888765 46689
Q ss_pred HhhcCeEEEEcCCeEEEecChhhHHHHHH
Q 003389 408 YDLFDDIILLSEGQIVYQGPRDNVLEFFE 436 (824)
Q Consensus 408 ~~lfD~iilL~~G~iv~~G~~~~~~~~f~ 436 (824)
..+||||++|.+|+++..|+++++...|.
T Consensus 2134 e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2134 EALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 99999999999999999999999987765
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=310.77 Aligned_cols=194 Identities=28% Similarity=0.336 Sum_probs=157.8
Q ss_pred cccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCC
Q 003389 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGE 259 (824)
Q Consensus 180 ~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~ 259 (824)
+++++++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++... .+...+.+.
T Consensus 31 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~---------~~~~~~~~~ 98 (224)
T cd03220 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRGRVSSLL---------GLGGGFNPE 98 (224)
T ss_pred hcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEchhh---------cccccCCCC
Confidence 334567999999999999999999999999999999999999887 99999999875321 112334567
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.+.....+.. .. + ....++++++.+||++..++.++
T Consensus 99 ~tv~enl~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~--- 141 (224)
T cd03220 99 LTGRENIYLNGRLLGLS----------RK----------E--------------IDEKIDEIIEFSELGDFIDLPVK--- 141 (224)
T ss_pred CcHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCChhhhhCChh---
Confidence 89999998764322110 00 0 01124567888999888887776
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++. +.|+|++.|++ .++.+++|++++|++
T Consensus 142 --~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~ 217 (224)
T cd03220 142 --TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDP-SSIKRLCDRALVLEK 217 (224)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 49999999999999999999999999999999999999999999999764 78888877654 477789999999999
Q ss_pred CeEEEec
Q 003389 420 GQIVYQG 426 (824)
Q Consensus 420 G~iv~~G 426 (824)
|++++.|
T Consensus 218 G~i~~~g 224 (224)
T cd03220 218 GKIRFDG 224 (224)
T ss_pred CEEEecC
Confidence 9998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=348.71 Aligned_cols=209 Identities=22% Similarity=0.273 Sum_probs=169.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCCCC-------CceEEEEecCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEFVP-------QRTCAYISQHD 254 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d 254 (824)
+.+|+|||++|++||+++|+|||||||||||++|+|+++|. ...+|+|.++|+++..... ++.++|++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 46999999999999999999999999999999999999862 1138999999998754321 24699999986
Q ss_pred C--CCCCCCHHHHHHHhhhhc-CCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc--
Q 003389 255 L--HHGEMTVRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-- 329 (824)
Q Consensus 255 ~--~~~~lTV~E~L~f~a~~~-~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-- 329 (824)
. +.+.+||+|++.+..... +.. +. +....++++++.+||++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR----------RE------------------------AARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHCCCCChH
Confidence 4 567789999987643211 110 00 01123567889999975
Q ss_pred -cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHH
Q 003389 330 -CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (824)
Q Consensus 330 -~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~ 408 (824)
..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|+++|+ ...+.
T Consensus 148 ~~~~~~~~-----~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd-~~~~~ 221 (529)
T PRK15134 148 KRLTDYPH-----QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN-LSIVR 221 (529)
T ss_pred HHHhhCCc-----ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCc-HHHHH
Confidence 3466655 5999999999999999999999999999999999999999999999987557888887665 44677
Q ss_pred hhcCeEEEEcCCeEEEecChhhHH
Q 003389 409 DLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 409 ~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
++||+|++|++|++++.|+++++.
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHh
Confidence 899999999999999999988764
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=311.28 Aligned_cols=198 Identities=19% Similarity=0.242 Sum_probs=164.8
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
..+++|+|+|++|+||++++|+||||||||||+++|+|+++|+ +|+|.++|+ ++++.|+..+.+.+|
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G~I~~~g~----------~~~~~~~~~~~~~~t 101 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VGKVDRNGE----------VSVIAISAGLSGQLT 101 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCE----------EeEEecccCCCCCCc
Confidence 4567999999999999999999999999999999999999987 999999985 356677777778899
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|.||+.+.....+... ++ ....++.+++.++|.+..++.++
T Consensus 102 v~enl~~~~~~~~~~~-----------------------~~-----------~~~~~~~~l~~~~l~~~~~~~~~----- 142 (264)
T PRK13546 102 GIENIEFKMLCMGFKR-----------------------KE-----------IKAMTPKIIEFSELGEFIYQPVK----- 142 (264)
T ss_pred HHHHHHHHHHHcCCCH-----------------------HH-----------HHHHHHHHHHHcCCchhhcCCcc-----
Confidence 9999987543222100 00 01123557788888877776655
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .++|+|++.|+ ..++.++||++++|++|+
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~tiIiisH~-~~~i~~~~d~i~~l~~G~ 220 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTIFFVSHN-LGQVRQFCTKIAWIEGGK 220 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCC-HHHHHHHcCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999999865 57888888765 447788999999999999
Q ss_pred EEEecChhhHHH
Q 003389 422 IVYQGPRDNVLE 433 (824)
Q Consensus 422 iv~~G~~~~~~~ 433 (824)
++..|+.+++.+
T Consensus 221 i~~~g~~~~~~~ 232 (264)
T PRK13546 221 LKDYGELDDVLP 232 (264)
T ss_pred EEEeCCHHHHHH
Confidence 999999887754
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=307.68 Aligned_cols=189 Identities=24% Similarity=0.281 Sum_probs=159.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+++|+++|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.....++.++|++|++.+++.+|++
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~ 100 (214)
T PRK13543 24 EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTL 100 (214)
T ss_pred ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CeeEEECCEEccchhhhhceEEeecCcccccCCcHH
Confidence 45999999999999999999999999999999999999987 999999999876433345699999998888889999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+.+.....+.. ....++.+++.+||++..++.++ .|
T Consensus 101 e~l~~~~~~~~~~-------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~L 138 (214)
T PRK13543 101 ENLHFLCGLHGRR-------------------------------------AKQMPGSALAIVGLAGYEDTLVR-----QL 138 (214)
T ss_pred HHHHHHHHhcCCc-------------------------------------HHHHHHHHHHHcCChhhccCChh-----hC
Confidence 9998764321100 00123557888999877777765 49
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
||||||||+||++++.+|++|+|||||+|||+.+...+.+.|+++.+ .+.|+|++.|+ ..++.++||++++|+.
T Consensus 139 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~-~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 139 SAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLR-GGGAALVTTHG-AYAAPPVRTRMLTLEA 212 (214)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecC-hhhhhhhcceEEEEee
Confidence 99999999999999999999999999999999999999999999876 47888887665 4578899999999864
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=343.46 Aligned_cols=207 Identities=22% Similarity=0.311 Sum_probs=172.0
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHG 258 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~ 258 (824)
++++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|+..+++
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 86 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVL 86 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccccccc
Confidence 356999999999999999999999999999999999999887 9999999998754321 356999999988889
Q ss_pred CCCHHHHHHHhhh-hcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 259 EMTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 259 ~lTV~E~L~f~a~-~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
.+||+||+.++.. ..+... ... +....++.+++.+||.+..++.+++
T Consensus 87 ~~tv~~~l~~~~~~~~~~~~--------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 134 (491)
T PRK10982 87 QRSVMDNMWLGRYPTKGMFV--------DQD------------------------KMYRDTKAIFDELDIDIDPRAKVAT 134 (491)
T ss_pred CCCHHHHhhccccccccccc--------CHH------------------------HHHHHHHHHHHHcCCCCCccCchhh
Confidence 9999999987532 111000 000 0011356688999998877777664
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++++ .+.|+|++.|+ .+++.++||++++|
T Consensus 135 -----LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~-~~~~~~~~d~i~~l 207 (491)
T PRK10982 135 -----LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHK-MEEIFQLCDEITIL 207 (491)
T ss_pred -----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecC-HHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999975 47888887654 55788899999999
Q ss_pred cCCeEEEecChhhH
Q 003389 418 SEGQIVYQGPRDNV 431 (824)
Q Consensus 418 ~~G~iv~~G~~~~~ 431 (824)
++|+++..|+++++
T Consensus 208 ~~G~i~~~~~~~~~ 221 (491)
T PRK10982 208 RDGQWIATQPLAGL 221 (491)
T ss_pred ECCEEEeecChhhC
Confidence 99999999987664
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=354.90 Aligned_cols=206 Identities=22% Similarity=0.272 Sum_probs=169.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccC----------CCC-------CCce
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN----------EFV-------PQRT 246 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~----------~~~-------~~~~ 246 (824)
.++|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|..+. ... ..+.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999887 999999986431 100 1246
Q ss_pred EEEEecCC--CCCCCCCHHHHHHHhhhhc-CCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHH
Q 003389 247 CAYISQHD--LHHGEMTVRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 323 (824)
Q Consensus 247 i~yv~Q~d--~~~~~lTV~E~L~f~a~~~-~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~ 323 (824)
++||+|++ .+++.+||.||+.++.+.. +.. +. +....++++|+
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS----------RE------------------------EAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHH
Confidence 99999987 5788899999999875432 111 00 00123567899
Q ss_pred HcCCCc---cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 003389 324 ILGLDI---CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400 (824)
Q Consensus 324 ~lgL~~---~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi 400 (824)
.+||++ ..+..+. .|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++..|+|+|+++
T Consensus 152 ~~gL~~~~~~~~~~~~-----~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~it 226 (623)
T PRK10261 152 QVRIPEAQTILSRYPH-----QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFIT 226 (623)
T ss_pred HCCCCChhhHHhCCCc-----cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 999963 3455554 59999999999999999999999999999999999999999999999875588888765
Q ss_pred ccCchhHHhhcCeEEEEcCCeEEEecChhhHH
Q 003389 401 LQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 401 ~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
|...++.++||+|++|++|++++.|+++++.
T Consensus 227 -Hdl~~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 227 -HDMGVVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred -CCHHHHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 4556788999999999999999999988763
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=345.98 Aligned_cols=219 Identities=22% Similarity=0.289 Sum_probs=175.2
Q ss_pred HhhhcccccCcc----cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeC-Ccc---cCCC
Q 003389 170 ALGLLHLVPSKK----RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC-GHE---LNEF 241 (824)
Q Consensus 170 ~l~~~~~~~~~~----~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~n-G~~---~~~~ 241 (824)
++++.++...+. +.+.+|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++ |.+ +...
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT---SGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEecCCcccccccc
Confidence 455666655442 2356999999999999999999999999999999999999887 9999996 642 2211
Q ss_pred C------CCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchh
Q 003389 242 V------PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETS 315 (824)
Q Consensus 242 ~------~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~ 315 (824)
. .++.++|++|++.+++.+||.||+.+...+ ... ..+ ..
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~----------~~~------------------------~~ 400 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELP----------DEL------------------------AR 400 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCC----------HHH------------------------HH
Confidence 1 134699999998888999999999875321 100 000 01
Q ss_pred hhHHHHHHHcCCCc-----cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 003389 316 LVTDYVLKILGLDI-----CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (824)
Q Consensus 316 ~~~~~iL~~lgL~~-----~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~ 390 (824)
..++.+++.+||.+ ..++.++ .|||||||||+||+||+.+|++|||||||+|||+.+...+++.|+++++
T Consensus 401 ~~~~~~l~~~~l~~~~~~~~~~~~~~-----~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~ 475 (520)
T TIGR03269 401 MKAVITLKMVGFDEEKAEEILDKYPD-----ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKARE 475 (520)
T ss_pred HHHHHHHHhCCCCCccchhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 13456889999975 3566655 5999999999999999999999999999999999999999999999987
Q ss_pred hCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhHH
Q 003389 391 ILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 391 ~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
..+.|+|++.|+ ..++.++||++++|++|+++..|+++++.
T Consensus 476 ~~g~tvi~vsHd-~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 516 (520)
T TIGR03269 476 EMEQTFIIVSHD-MDFVLDVCDRAALMRDGKIVKIGDPEEIV 516 (520)
T ss_pred HcCcEEEEEeCC-HHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 557888887655 45788999999999999999999988764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=310.66 Aligned_cols=220 Identities=22% Similarity=0.274 Sum_probs=167.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l--~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~ 257 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|+. +|+ +|+|.++|+++....+ ++.++|++|++.++
T Consensus 14 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (248)
T PRK09580 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEI 90 (248)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC---ceEEEECCCccccCCHHHHhhcceEEEecCchhc
Confidence 46999999999999999999999999999999999995 465 9999999988754322 24699999998888
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccccc
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 336 (824)
+.+|+.+++.+..... .. . ......+. .+....++.+++.++|+ +..++.+.
T Consensus 91 ~~~~~~~~~~~~~~~~------------~~-~-----~~~~~~~~---------~~~~~~~~~~l~~~~l~~~~~~~~~~ 143 (248)
T PRK09580 91 PGVSNQFFLQTALNAV------------RS-Y-----RGQEPLDR---------FDFQDLMEEKIALLKMPEDLLTRSVN 143 (248)
T ss_pred cchhHHHHHHHhhhhh------------hc-c-----cccccchH---------HHHHHHHHHHHHHcCCChhhcccCCC
Confidence 8888777765431100 00 0 00000000 00112356688889995 34454442
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh-cCeEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-FDDII 415 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l-fD~ii 415 (824)
+.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .++|+|+++|++. .+... +|+++
T Consensus 144 ----~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~-~~~~~~~d~i~ 217 (248)
T PRK09580 144 ----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQR-ILDYIKPDYVH 217 (248)
T ss_pred ----CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHhhhCCEEE
Confidence 25999999999999999999999999999999999999999999999875 4789999877654 55555 89999
Q ss_pred EEcCCeEEEecChhhHHHHHHHcCC
Q 003389 416 LLSEGQIVYQGPRDNVLEFFEHMGF 440 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~~~f~~~G~ 440 (824)
+|++|++++.|+.+.+ ..++..++
T Consensus 218 ~l~~g~i~~~g~~~~~-~~~~~~~~ 241 (248)
T PRK09580 218 VLYQGRIVKSGDFTLV-KQLEEQGY 241 (248)
T ss_pred EEECCeEEEeCCHHHH-HHHHhcCC
Confidence 9999999999998855 34444443
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=346.10 Aligned_cols=208 Identities=25% Similarity=0.300 Sum_probs=169.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCCcceEeeCC-----------------------ccc
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCG-----------------------HEL 238 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l--~~~~~~sG~I~~nG-----------------------~~~ 238 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|++ +|+ +|+|.++| .++
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 89 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTL 89 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEeccccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999996 576 99999972 221
Q ss_pred C-------CC------CCCceEEEEecC-CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHH
Q 003389 239 N-------EF------VPQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304 (824)
Q Consensus 239 ~-------~~------~~~~~i~yv~Q~-d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~ 304 (824)
. .. ..++.++|++|+ +.+++.+||+||+.|.....+.. ..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~----------~~~--------------- 144 (520)
T TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYE----------GKE--------------- 144 (520)
T ss_pred cccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCC----------HHH---------------
Confidence 1 00 013568999997 67888899999998864322210 000
Q ss_pred HHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHH
Q 003389 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF 384 (824)
Q Consensus 305 ~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~ 384 (824)
....++++++.+||++..+..++ .|||||||||+||++|+.+|++|||||||+|||+.++..+++.
T Consensus 145 ---------~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 210 (520)
T TIGR03269 145 ---------AVGRAVDLIEMVQLSHRITHIAR-----DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA 210 (520)
T ss_pred ---------HHHHHHHHHHHcCChhhhhcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH
Confidence 01235678999999887777665 4999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhHHHH
Q 003389 385 LKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEF 434 (824)
Q Consensus 385 L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~~~ 434 (824)
|+++++..+.|+|++.|+ ...+.++||++++|++|++++.|+.+++.+.
T Consensus 211 l~~l~~~~g~tviivtHd-~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 211 LEEAVKASGISMVLTSHW-PEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred HHHHHHhcCcEEEEEeCC-HHHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 999976568888887665 4467789999999999999999998877553
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=345.36 Aligned_cols=209 Identities=25% Similarity=0.290 Sum_probs=169.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+++|+|||+++++|++++|+|||||||||||++|+|+++|. ..+|+|.++|+++..... ++.++||+|++.+++.
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 56999999999999999999999999999999999998761 139999999998764321 3569999999988999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc-cccccCc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA-DTMVGDE 338 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~-dt~vg~~ 338 (824)
+||+||+.+.......+.. .... +....++++++.+||.+.. ++.++
T Consensus 93 ~tv~~~l~~~~~~~~~~~~------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGR------MAYN------------------------AMYLRAKNLLRELQLDADNVTRPVG-- 140 (500)
T ss_pred CcHHHHHHhhccccccccc------cCHH------------------------HHHHHHHHHHHHcCCCCCcccCchh--
Confidence 9999999886432100000 0000 0011356688999998654 45555
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++++ .|.|+|++.|+ ..++.++||+|++|+
T Consensus 141 ---~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd-~~~~~~~~d~i~~l~ 215 (500)
T TIGR02633 141 ---DYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHK-LNEVKAVCDTICVIR 215 (500)
T ss_pred ---hCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCc-HHHHHHhCCEEEEEe
Confidence 4999999999999999999999999999999999999999999999975 47888887654 557888999999999
Q ss_pred CCeEEEecChhh
Q 003389 419 EGQIVYQGPRDN 430 (824)
Q Consensus 419 ~G~iv~~G~~~~ 430 (824)
+|++++.|+.++
T Consensus 216 ~G~i~~~~~~~~ 227 (500)
T TIGR02633 216 DGQHVATKDMST 227 (500)
T ss_pred CCeEeeecCccc
Confidence 999999987754
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=378.54 Aligned_cols=259 Identities=18% Similarity=0.210 Sum_probs=199.8
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCC-CCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGI-EIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLH 175 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~-~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 175 (824)
.+.....++|+.+..+.++|.... .+ -..... .++..++.|+|+++.+..
T Consensus 1246 ~e~~~~s~eRi~~~~~~~~e~~~~--~~-~~~~~~~wp~~g~I~f~nVsf~Y~~-------------------------- 1296 (1522)
T TIGR00957 1246 METNIVAVERLKEYSETEKEAPWQ--IQ-ETAPPSGWPPRGRVEFRNYCLRYRE-------------------------- 1296 (1522)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccc--cc-CCCCCCCCCCCCcEEEEEEEEEeCC--------------------------
Confidence 355677888988888766552100 00 000010 123457999999886521
Q ss_pred cccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEec
Q 003389 176 LVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQ 252 (824)
Q Consensus 176 ~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q 252 (824)
+..++|+|||++|+|||.+||+|++|||||||+++|.|+++|+ +|+|.+||.++.+... ++.++||+|
T Consensus 1297 ------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~---~G~I~IdG~dI~~i~~~~LR~~i~iVpQ 1367 (1522)
T TIGR00957 1297 ------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA---EGEIIIDGLNIAKIGLHDLRFKITIIPQ 1367 (1522)
T ss_pred ------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC---CCeEEECCEEccccCHHHHHhcCeEECC
Confidence 1135999999999999999999999999999999999999997 9999999999987653 578999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccc
Q 003389 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d 332 (824)
++.+|.. ||||||+.... .+.+++++++...+.+. .+ -.|++..|
T Consensus 1368 dp~LF~g-TIr~NLdp~~~--------------------------~sdeei~~al~~a~l~~------~I--~~lp~GLd 1412 (1522)
T TIGR00957 1368 DPVLFSG-SLRMNLDPFSQ--------------------------YSDEEVWWALELAHLKT------FV--SALPDKLD 1412 (1522)
T ss_pred CCcccCc-cHHHHcCcccC--------------------------CCHHHHHHHHHHcCcHH------HH--hhCccCCC
Confidence 9988875 99999973210 11233444444333221 11 24567789
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
|.||+ .+..||||||||++|||||+++|+||+||||||+||+.|...|.+.|++..+ ++|+|++.|+. ++...||
T Consensus 1413 t~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~--~~TvI~IAHRl--~ti~~~D 1487 (1522)
T TIGR00957 1413 HECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFE--DCTVLTIAHRL--NTIMDYT 1487 (1522)
T ss_pred ceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecCH--HHHHhCC
Confidence 99986 4556999999999999999999999999999999999999999999998753 78998887765 5677899
Q ss_pred eEEEEcCCeEEEecChhhHHH
Q 003389 413 DIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~~ 433 (824)
+|++|++|+|+++|+++++++
T Consensus 1488 rIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1488 RVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=313.65 Aligned_cols=190 Identities=26% Similarity=0.377 Sum_probs=158.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCC--CC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGE--MT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~--lT 261 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|. ..++|++|++.+++. .|
T Consensus 17 ~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~~~--------~~i~~v~q~~~~~~~l~~~ 85 (251)
T PRK09544 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNGK--------LRIGYVPQKLYLDTTLPLT 85 (251)
T ss_pred ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCc--------cCEEEeccccccccccChh
Confidence 45999999999999999999999999999999999999987 999999872 359999999877665 37
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
+.+++.+.. +. . ...+.++++.+||.+..++.+.
T Consensus 86 ~~~~~~~~~---~~-----------------------~---------------~~~~~~~l~~~gl~~~~~~~~~----- 119 (251)
T PRK09544 86 VNRFLRLRP---GT-----------------------K---------------KEDILPALKRVQAGHLIDAPMQ----- 119 (251)
T ss_pred HHHHHhccc---cc-----------------------c---------------HHHHHHHHHHcCChHHHhCChh-----
Confidence 777664321 00 0 0123457889999887777665
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|+ ..++.+.||++++|+ |+
T Consensus 120 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~-~~~i~~~~d~i~~l~-~~ 197 (251)
T PRK09544 120 KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD-LHLVMAKTDEVLCLN-HH 197 (251)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHHHHhCCEEEEEC-Cc
Confidence 4999999999999999999999999999999999999999999999976547888887665 457888999999996 47
Q ss_pred EEEecChhhHH
Q 003389 422 IVYQGPRDNVL 432 (824)
Q Consensus 422 iv~~G~~~~~~ 432 (824)
+++.|+++++.
T Consensus 198 i~~~g~~~~~~ 208 (251)
T PRK09544 198 ICCSGTPEVVS 208 (251)
T ss_pred eEeeCCHHHHh
Confidence 99999987763
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=311.57 Aligned_cols=207 Identities=20% Similarity=0.286 Sum_probs=162.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CCcceEeeCCcccCC----C---CCCceEEEEecCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNE----F---VPQRTCAYISQHD 254 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~--~~sG~I~~nG~~~~~----~---~~~~~i~yv~Q~d 254 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|+.+|.. ..+|+|.++|.++.. . ..++.++|++|++
T Consensus 29 ~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 108 (265)
T PRK14252 29 YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKP 108 (265)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCC
Confidence 359999999999999999999999999999999999987521 149999999987631 1 1245699999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC----cc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----IC 330 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~ 330 (824)
.+++. ||+||+.+.....+... ++ . ....++.+++.+++. +.
T Consensus 109 ~~~~~-tv~eni~~~~~~~~~~~----------~~---------~--------------~~~~~~~~l~~~~l~~~l~~~ 154 (265)
T PRK14252 109 NPFPK-SIFENVAYGLRIRGVKR----------RS---------I--------------LEERVENALRNAALWDEVKDR 154 (265)
T ss_pred cCCcc-hHHHHHHhHHHHcCCCh----------HH---------H--------------HHHHHHHHHHHcCCchhhhHH
Confidence 88875 99999987643222110 00 0 001233455566653 22
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh
Q 003389 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (824)
Q Consensus 331 ~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l 410 (824)
.+.. ...|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++++ +.|+|++.|+ .+++.++
T Consensus 155 ~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~-~~~~~~~ 226 (265)
T PRK14252 155 LGDL-----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHN-MQQAARV 226 (265)
T ss_pred HhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecC-HHHHHHh
Confidence 2333 346999999999999999999999999999999999999999999999965 5788887655 5578889
Q ss_pred cCeEEEEcCCeEEEecChhhHH
Q 003389 411 FDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 411 fD~iilL~~G~iv~~G~~~~~~ 432 (824)
||++++|++|+++..|+.+++.
T Consensus 227 ~d~i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 227 SDYTAYMYMGELIEFGATDTIF 248 (265)
T ss_pred CCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999987763
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=304.47 Aligned_cols=187 Identities=23% Similarity=0.260 Sum_probs=155.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~lT 261 (824)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t 90 (204)
T PRK13538 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELT 90 (204)
T ss_pred EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccchHHhhhheEEeCCccccCcCCc
Confidence 46999999999999999999999999999999999999987 999999998875321 2457999999988899999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|.||+.+.....+. .....++.+++.+||.+..++.++
T Consensus 91 v~e~l~~~~~~~~~-------------------------------------~~~~~~~~~l~~~gl~~~~~~~~~----- 128 (204)
T PRK13538 91 ALENLRFYQRLHGP-------------------------------------GDDEALWEALAQVGLAGFEDVPVR----- 128 (204)
T ss_pred HHHHHHHHHHhcCc-------------------------------------cHHHHHHHHHHHcCCHHHhhCChh-----
Confidence 99999876432110 001134668899999877777665
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++ .+.|+|++.|++. ++-...+|++++
T Consensus 129 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 129 QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecChh-hhccCCceEEec
Confidence 4999999999999999999999999999999999999999999999875 4788888877654 555566677766
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=343.60 Aligned_cols=192 Identities=27% Similarity=0.393 Sum_probs=155.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++|+||+.++|+||||||||||+|+|+|+++|+ +|+|.+||.++++... ++.++||+|++.+++ .
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ 410 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQHPFLFA-G 410 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCHHHHHhheEEEcCCCcccC-c
Confidence 36999999999999999999999999999999999999997 9999999999876543 468999999988775 5
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
|++||+.++.. +.+.+++.+++...+. ++.+ -.|++..||.+|+ ..
T Consensus 411 ti~~Ni~~~~~-------------------------~~~~~~i~~a~~~~~l------~~~i--~~lp~Gldt~v~e-~g 456 (529)
T TIGR02857 411 TIAENIRLARP-------------------------DASDAEIRRALERAGL------DEFV--AALPQGLDTLIGE-GG 456 (529)
T ss_pred CHHHHHhccCC-------------------------CCCHHHHHHHHHHcCc------HHHH--HhCcccccchhcc-cc
Confidence 99999987521 1111222222222221 1122 2456678999986 45
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
..||||||||++|||+|+++|++++|||||++||+.++..+.+.|+++. .++|+|++.|++ ++.+.||+|++|
T Consensus 457 ~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~--~~~~~~d~i~~l 529 (529)
T TIGR02857 457 AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRL--ALAERADRIVVL 529 (529)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCH--HHHHhCCEEEeC
Confidence 5699999999999999999999999999999999999999999999985 378999988876 456789999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=302.29 Aligned_cols=180 Identities=23% Similarity=0.345 Sum_probs=152.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l--~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~ 257 (824)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. +|+ +|+|.+||+++..... ++.++|++|+..++
T Consensus 13 ~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (200)
T cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT---EGEILFKGEDITDLPPEERARLGIFLAFQYPPEI 89 (200)
T ss_pred EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC---ccEEEECCEECCcCCHHHHhhCcEEEeecChhhc
Confidence 46999999999999999999999999999999999994 565 9999999998865432 23599999998888
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+|+++++.-
T Consensus 90 ~~~~~~~~l~~--------------------------------------------------------------------- 100 (200)
T cd03217 90 PGVKNADFLRY--------------------------------------------------------------------- 100 (200)
T ss_pred cCccHHHHHhh---------------------------------------------------------------------
Confidence 87787765510
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh-hcCeEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD-LFDDIIL 416 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~-lfD~iil 416 (824)
..+.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++ .++|+|++.|++. .+.+ .||++++
T Consensus 101 -~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~~-~~~~~~~d~i~~ 177 (200)
T cd03217 101 -VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQR-LLDYIKPDRVHV 177 (200)
T ss_pred -ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhhCCEEEE
Confidence 0124999999999999999999999999999999999999999999999875 4789999887765 5666 7999999
Q ss_pred EcCCeEEEecChhhHHHHHHHcC
Q 003389 417 LSEGQIVYQGPRDNVLEFFEHMG 439 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~~~f~~~G 439 (824)
|++|++++.|+.+ +.++|.+.|
T Consensus 178 l~~G~i~~~~~~~-~~~~~~~~~ 199 (200)
T cd03217 178 LYDGRIVKSGDKE-LALEIEKKG 199 (200)
T ss_pred EECCEEEEEccHH-HHhhhcccc
Confidence 9999999999554 555565444
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=322.50 Aligned_cols=209 Identities=26% Similarity=0.382 Sum_probs=174.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGE 259 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~ 259 (824)
.++||+++|+.+++|+.++++||+|+||||++++|-.+++++ +|.|+++|+++.... .++.||.||||..++.+
T Consensus 275 ~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND 351 (497)
T COG5265 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND 351 (497)
T ss_pred cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHHHHHHHHhCcCcccceehhh
Confidence 467999999999999999999999999999999999999997 999999999987543 35789999998777765
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
|...|+.|+. |+...++...++..+..+. . +..|++.+||.||+.+
T Consensus 352 -ti~yni~ygr-------------------------~~at~eev~aaa~~aqi~~------f--i~~lP~gy~t~Vgerg 397 (497)
T COG5265 352 -TIAYNIKYGR-------------------------PDATAEEVGAAAEAAQIHD------F--IQSLPEGYDTGVGERG 397 (497)
T ss_pred -hHHHHHhccC-------------------------ccccHHHHHHHHHHhhhhH------H--HHhCchhhhcccchhe
Confidence 9999998862 2333333333333322211 1 3367899999999876
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.+ |||||||||+|||+++++|++|++||.||+||+.|+++|...|++.++ |.|.++.-|.- .+.--+|.|+||++
T Consensus 398 lk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~--~rttlviahrl--sti~~adeiivl~~ 472 (497)
T COG5265 398 LK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA--GRTTLVIAHRL--STIIDADEIIVLDN 472 (497)
T ss_pred ee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC--CCeEEEEeehh--hhccCCceEEEeeC
Confidence 66 999999999999999999999999999999999999999999999985 66766655543 46667999999999
Q ss_pred CeEEEecChhhHHH
Q 003389 420 GQIVYQGPRDNVLE 433 (824)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (824)
|+|++.|.+++++.
T Consensus 473 g~i~erg~h~~ll~ 486 (497)
T COG5265 473 GRIVERGTHEELLA 486 (497)
T ss_pred CEEEecCcHHHHHH
Confidence 99999999999875
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=300.29 Aligned_cols=179 Identities=25% Similarity=0.321 Sum_probs=146.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-----CCCceEEEEecCCC-C
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----VPQRTCAYISQHDL-H 256 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~-~ 256 (824)
++.+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.++|++|++. .
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 356999999999999999999999999999999999999887 99999999887421 11356999999863 3
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
+..+||+||+.+.....+.. .. + ....++++++.+||++..++.++
T Consensus 81 ~~~~tv~~nl~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~ 126 (190)
T TIGR01166 81 LFAADVDQDVAFGPLNLGLS----------EA----------E--------------VERRVREALTAVGASGLRERPTH 126 (190)
T ss_pred cccccHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCchhhhhCChh
Confidence 44579999998864322110 00 0 01134668889999887777765
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCc
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~ 404 (824)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++.|++.
T Consensus 127 -----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tili~sH~~~ 188 (190)
T TIGR01166 127 -----CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA-EGMTVVISTHDVD 188 (190)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeeccc
Confidence 4999999999999999999999999999999999999999999999976 4889999888753
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=324.37 Aligned_cols=188 Identities=30% Similarity=0.393 Sum_probs=159.8
Q ss_pred EEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhH
Q 003389 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE 280 (824)
Q Consensus 202 LlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~ 280 (824)
|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++|++|+..+++.+||+||+.|+.+.++..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~---- 73 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVP---- 73 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCC----
Confidence 68999999999999999999987 9999999998765332 467999999999999999999999975432211
Q ss_pred HHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcC
Q 003389 281 LLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360 (824)
Q Consensus 281 ~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~ 360 (824)
+. + ....++++++.+||++..++.+. .|||||||||+|||+|+.+
T Consensus 74 ------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qRvalaraL~~~ 118 (325)
T TIGR01187 74 ------RA----------E--------------IKPRVLEALRLVQLEEFADRKPH-----QLSGGQQQRVALARALVFK 118 (325)
T ss_pred ------HH----------H--------------HHHHHHHHHHHcCCcchhcCChh-----hCCHHHHHHHHHHHHHHhC
Confidence 00 0 01135678899999887777665 5999999999999999999
Q ss_pred CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhHH
Q 003389 361 ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 361 p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
|++|||||||+|||+.++..+.+.|+++.+..+.|+|+++|++ .++..+||+|++|++|+++..|+++++.
T Consensus 119 p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 119 PKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999876688998887654 5788999999999999999999998874
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=342.63 Aligned_cols=203 Identities=27% Similarity=0.314 Sum_probs=167.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC----CCceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~----~~~~i~yv~Q~d~~~~~ 259 (824)
+++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 46999999999999999999999999999999999999887 999999999875322 13579999999989999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.++......+. .... +....++.+++.+||++..++.++
T Consensus 94 ~tv~~~l~~~~~~~~~~~-------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (501)
T PRK11288 94 MTVAENLYLGQLPHKGGI-------VNRR------------------------LLNYEAREQLEHLGVDIDPDTPLK--- 139 (501)
T ss_pred CCHHHHHHhcccccccCC-------CCHH------------------------HHHHHHHHHHHHcCCCCCcCCchh---
Confidence 999999988532110000 0000 001134668899999877777665
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|++.|++ .++.++||++++|++
T Consensus 140 --~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~-~~~~~~~d~i~~l~~ 215 (501)
T PRK11288 140 --YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRM-EEIFALCDAITVFKD 215 (501)
T ss_pred --hCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 4999999999999999999999999999999999999999999999975 478888877654 477889999999999
Q ss_pred CeEEEecC
Q 003389 420 GQIVYQGP 427 (824)
Q Consensus 420 G~iv~~G~ 427 (824)
|+++..++
T Consensus 216 G~i~~~~~ 223 (501)
T PRK11288 216 GRYVATFD 223 (501)
T ss_pred CEEEeecC
Confidence 99987664
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=301.66 Aligned_cols=184 Identities=21% Similarity=0.230 Sum_probs=156.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--CCCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~i~yv~Q~d~~~~~lT 261 (824)
+.+|+|+|++|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|+++... ..++.++|++|++.+++.+|
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLS 89 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccccHHhhhheEEeccccccCCCcC
Confidence 46999999999999999999999999999999999999887 99999999886432 12467999999988888999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.+..... ....++.+++.+||++..++.+.
T Consensus 90 v~e~l~~~~~~~----------------------------------------~~~~~~~~l~~~~l~~~~~~~~~----- 124 (201)
T cd03231 90 VLENLRFWHADH----------------------------------------SDEQVEEALARVGLNGFEDRPVA----- 124 (201)
T ss_pred HHHHHHhhcccc----------------------------------------cHHHHHHHHHHcCChhhhcCchh-----
Confidence 999998742100 01124567889999877777665
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.+ .+.|+|++.|++. +..+.||+++++
T Consensus 125 ~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCch-hhhhccceeEec
Confidence 4999999999999999999999999999999999999999999999875 4789888877665 566789999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=331.89 Aligned_cols=227 Identities=18% Similarity=0.206 Sum_probs=176.9
Q ss_pred EEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccccCcccc--cccccceeeEEeCCeEEEEEcCCCCcHHHHH
Q 003389 137 EVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRS--VRILKDVSGIVKPSRMTLLLGPPGAGKTTLM 214 (824)
Q Consensus 137 ~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~--~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL 214 (824)
.++++|++..+..+.. .++.+.++...+.+. +.+|+||||+|++|++++|+|||||||||||
T Consensus 4 ~i~~~n~tk~y~~~~~----------------~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLL 67 (549)
T PRK13545 4 KVKFEHVTKKYKMYNK----------------PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLS 67 (549)
T ss_pred eEEEEeeeeecccccc----------------ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHH
Confidence 4677787766543321 123444444333322 4699999999999999999999999999999
Q ss_pred HHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCC
Q 003389 215 LALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGI 294 (824)
Q Consensus 215 ~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i 294 (824)
++|+|+++|+ +|+|.++|.+. ++.+...+.+.+||+||+.+.....+.. ..
T Consensus 68 kiLaGLl~P~---sGeI~I~G~~~----------~i~~~~~l~~~lTV~EnL~l~~~~~~~~----------~~------ 118 (549)
T PRK13545 68 NLIAGVTMPN---KGTVDIKGSAA----------LIAISSGLNGQLTGIENIELKGLMMGLT----------KE------ 118 (549)
T ss_pred HHHhCCCCCC---ceEEEECCEee----------eEEeccccCCCCcHHHHHHhhhhhcCCC----------HH------
Confidence 9999999887 99999999651 1223345567789999998754322210 00
Q ss_pred CCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCC
Q 003389 295 KPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLD 374 (824)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLD 374 (824)
+ ....++.+++.+||.+..++.++ .|||||||||+||++|+.+|++|+|||||+|||
T Consensus 119 ----e--------------~~e~i~elLe~lgL~~~ld~~~~-----~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD 175 (549)
T PRK13545 119 ----K--------------IKEIIPEIIEFADIGKFIYQPVK-----TYSSGMKSRLGFAISVHINPDILVIDEALSVGD 175 (549)
T ss_pred ----H--------------HHHHHHHHHHHcCChhHhhCCcc-----cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCC
Confidence 0 01124567889999888777765 499999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhHHH
Q 003389 375 SSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 375 s~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~~ 433 (824)
+.++..+.+.|+++++ .++|+|++.|++ .++.++||++++|++|++++.|+++++..
T Consensus 176 ~~sr~~LlelL~el~~-~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 176 QTFTKKCLDKMNEFKE-QGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999865 478888887664 47888999999999999999999988764
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=288.59 Aligned_cols=223 Identities=26% Similarity=0.349 Sum_probs=182.1
Q ss_pred CcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-------CC--------
Q 003389 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VP-------- 243 (824)
Q Consensus 179 ~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-------~~-------- 243 (824)
++.+...+|++||+..+.|+++.|+|.|||||||+|+||.=+..|. .|+|.+||..+.-. .+
T Consensus 14 K~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~G~l~~ad~~q~~r 90 (256)
T COG4598 14 KRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKDGQLKPADKRQLQR 90 (256)
T ss_pred hhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCCCCeeeCCHHHHHH
Confidence 3445678999999999999999999999999999999999888887 99999999876311 11
Q ss_pred -CceEEEEecCCCCCCCCCHHHHHHHhhh-hcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHH
Q 003389 244 -QRTCAYISQHDLHHGEMTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYV 321 (824)
Q Consensus 244 -~~~i~yv~Q~d~~~~~lTV~E~L~f~a~-~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 321 (824)
+...++|+|+.++.++|||.||+.-+.. ..|+ ++. +...+.+..
T Consensus 91 ~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~----------~k~------------------------ea~e~Ae~~ 136 (256)
T COG4598 91 LRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGV----------SKA------------------------EAIERAEKY 136 (256)
T ss_pred HHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcC----------CHH------------------------HHHHHHHHH
Confidence 1246999999999999999999965421 1111 111 112235668
Q ss_pred HHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEc
Q 003389 322 LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401 (824)
Q Consensus 322 L~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~ 401 (824)
|...||.+..|.++. .|||||+||++|||||+.+|+++++|||||+|||.-.-++++.++++++ .|+|+++++|
T Consensus 137 L~kVGi~ek~~~YP~-----~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAe-EgrTMv~VTH 210 (256)
T COG4598 137 LAKVGIAEKADAYPA-----HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE-EGRTMVVVTH 210 (256)
T ss_pred HHHhCchhhhhcCcc-----ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH-hCCeEEEEee
Confidence 999999998887665 4999999999999999999999999999999999999999999999997 5999999876
Q ss_pred cCchhHHhhcCeEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHH
Q 003389 402 QPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQ 453 (824)
Q Consensus 402 q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 453 (824)
. ..-..+...+|+.|++|.|-++||++++ |..|...-...|+.
T Consensus 211 E-M~FAR~Vss~v~fLh~G~iEE~G~P~qv--------f~nP~S~RlkqFls 253 (256)
T COG4598 211 E-MGFARDVSSHVIFLHQGKIEEEGPPEQV--------FGNPQSPRLKQFLS 253 (256)
T ss_pred e-hhHHHhhhhheEEeecceecccCChHHH--------hcCCCCHHHHHHHH
Confidence 4 4466778999999999999999999988 44565544455543
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=295.61 Aligned_cols=159 Identities=31% Similarity=0.487 Sum_probs=141.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--CCCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~i~yv~Q~d~~~~~lT 261 (824)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|+++... ..++.++|++|++.+++.+|
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLT 89 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHhhhccEEEEecCCccccCCc
Confidence 35999999999999999999999999999999999999886 99999999887542 22467999999988888888
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|.||+.
T Consensus 90 v~~~~~-------------------------------------------------------------------------- 95 (173)
T cd03230 90 VRENLK-------------------------------------------------------------------------- 95 (173)
T ss_pred HHHHhh--------------------------------------------------------------------------
Confidence 887650
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++. +.|+|++.|++ .++.+.||++++|++|+
T Consensus 96 -LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~-~~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 96 -LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHIL-EEAERLCDRVAILNNGR 172 (173)
T ss_pred -cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCH-HHHHHhCCEEEEEeCCC
Confidence 8999999999999999999999999999999999999999999999874 78888877654 47778999999999997
Q ss_pred E
Q 003389 422 I 422 (824)
Q Consensus 422 i 422 (824)
+
T Consensus 173 i 173 (173)
T cd03230 173 I 173 (173)
T ss_pred C
Confidence 4
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=298.37 Aligned_cols=161 Identities=26% Similarity=0.398 Sum_probs=143.5
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCC---CCCC
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHD---LHHG 258 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d---~~~~ 258 (824)
+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|+++|+++....+ ++.++|++|+. .+++
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVL 91 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccCHHHHHhCCeEEecCCcccCcccC
Confidence 899999999999999999999999999999999999987 9999999998765431 35799999984 5788
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCc
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (824)
.+||+||+.+..
T Consensus 92 ~~t~~e~l~~~~-------------------------------------------------------------------- 103 (182)
T cd03215 92 DLSVAENIALSS-------------------------------------------------------------------- 103 (182)
T ss_pred CCcHHHHHHHHh--------------------------------------------------------------------
Confidence 899999986530
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||++++|+
T Consensus 104 ---~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~-~~~~~~~d~v~~l~ 178 (182)
T cd03215 104 ---LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLISSEL-DELLGLCDRILVMY 178 (182)
T ss_pred ---hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEec
Confidence 0999999999999999999999999999999999999999999999975 478888887664 57888999999999
Q ss_pred CCeE
Q 003389 419 EGQI 422 (824)
Q Consensus 419 ~G~i 422 (824)
+|++
T Consensus 179 ~G~i 182 (182)
T cd03215 179 EGRI 182 (182)
T ss_pred CCcC
Confidence 9974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=342.94 Aligned_cols=221 Identities=20% Similarity=0.303 Sum_probs=176.2
Q ss_pred HhhhcccccCcc--cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-CCCCCcceEeeCCcccCCCCC---
Q 003389 170 ALGLLHLVPSKK--RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG-KDLRASGKITYCGHELNEFVP--- 243 (824)
Q Consensus 170 ~l~~~~~~~~~~--~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~-~~~~~sG~I~~nG~~~~~~~~--- 243 (824)
++++.++...+. +++.+|+|||++|++|++++|+||||||||||+|+|+|+++ |+ +|+|.++|+++.....
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~---~G~i~~~g~~~~~~~~~~~ 335 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW---EGEIFIDGKPVKIRNPQQA 335 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CcEEEECCEECCCCCHHHH
Confidence 456666665542 23569999999999999999999999999999999999998 46 9999999988753221
Q ss_pred -CceEEEEecCC---CCCCCCCHHHHHHHhhh--hcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhh
Q 003389 244 -QRTCAYISQHD---LHHGEMTVRETLDFSGR--CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLV 317 (824)
Q Consensus 244 -~~~i~yv~Q~d---~~~~~lTV~E~L~f~a~--~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 317 (824)
++.++|++|+. .+++.+||.||+.+... ....+. ..+. +....
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~-------~~~~------------------------~~~~~ 384 (506)
T PRK13549 336 IAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSR-------IDDA------------------------AELKT 384 (506)
T ss_pred HHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcc-------cChH------------------------HHHHH
Confidence 34689999985 47788999999987531 000000 0000 00123
Q ss_pred HHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 003389 318 TDYVLKILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396 (824)
Q Consensus 318 ~~~iL~~lgL~-~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tv 396 (824)
++.+++.+||. +..++.+++ |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|+
T Consensus 385 ~~~~l~~~~l~~~~~~~~~~~-----LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tv 458 (506)
T PRK13549 385 ILESIQRLKVKTASPELAIAR-----LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAI 458 (506)
T ss_pred HHHHHHhcCccCCCccccccc-----CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEE
Confidence 56789999996 567877764 999999999999999999999999999999999999999999999986 48888
Q ss_pred EEEEccCchhHHhhcCeEEEEcCCeEEEecChhhH
Q 003389 397 IVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 397 Iisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~ 431 (824)
|+++|+ ..++.++||++++|++|+++..|+.+++
T Consensus 459 i~~sHd-~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 459 IVISSE-LPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred EEECCC-HHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 887655 5578899999999999999999987654
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=306.92 Aligned_cols=199 Identities=24% Similarity=0.334 Sum_probs=152.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++ .
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~ 92 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS---SGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-G 92 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-c
Confidence 46999999999999999999999999999999999999886 999999998875432 2467999999988665 6
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHH--cCCCccccccccCc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKI--LGLDICADTMVGDE 338 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~--lgL~~~~dt~vg~~ 338 (824)
||+||+.+.... . . .+..+.++. .+ ....++. .|+....+ .
T Consensus 93 tv~enl~~~~~~---~-~-------------------~~~~~~~~~---~~------l~~~~~~l~~~l~~~~~-----~ 135 (221)
T cd03244 93 TIRSNLDPFGEY---S-D-------------------EELWQALER---VG------LKEFVESLPGGLDTVVE-----E 135 (221)
T ss_pred hHHHHhCcCCCC---C-H-------------------HHHHHHHHH---hC------cHHHHHhcccccccccc-----c
Confidence 999999653210 0 0 000000000 00 0111221 23332222 2
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.++.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++. ++. .||++++|+
T Consensus 136 ~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~-~~d~i~~l~ 211 (221)
T cd03244 136 GGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLD-TII-DSDRILVLD 211 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HHh-hCCEEEEEE
Confidence 4567999999999999999999999999999999999999999999999864 578888877654 454 599999999
Q ss_pred CCeEEEecC
Q 003389 419 EGQIVYQGP 427 (824)
Q Consensus 419 ~G~iv~~G~ 427 (824)
+|++++.|+
T Consensus 212 ~g~~~~~~~ 220 (221)
T cd03244 212 KGRVVEFDS 220 (221)
T ss_pred CCeEEecCC
Confidence 999998876
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=342.79 Aligned_cols=221 Identities=19% Similarity=0.333 Sum_probs=173.2
Q ss_pred HhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----Cc
Q 003389 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QR 245 (824)
Q Consensus 170 ~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~ 245 (824)
++.+.++...+ ..+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++
T Consensus 265 ~l~~~~l~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~ 338 (510)
T PRK09700 265 VFEVRNVTSRD---RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---GGEIRLNGKDISPRSPLDAVKK 338 (510)
T ss_pred EEEEeCccccC---CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCEECCCCCHHHHHHC
Confidence 35555555432 24899999999999999999999999999999999999887 9999999988753221 35
Q ss_pred eEEEEecC---CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHH
Q 003389 246 TCAYISQH---DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 322 (824)
Q Consensus 246 ~i~yv~Q~---d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL 322 (824)
.++|++|+ ..+++.+||+||+.+....+..+.. ... +..+.. .....+++++
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~-~~~----------~~~~~~--------------~~~~~~~~~l 393 (510)
T PRK09700 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYK-GAM----------GLFHEV--------------DEQRTAENQR 393 (510)
T ss_pred CcEEccCccccCCCcCCCcHHHHhcccccccccccc-ccc----------cccChH--------------HHHHHHHHHH
Confidence 69999998 4578899999999875321100000 000 000000 0011346789
Q ss_pred HHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEc
Q 003389 323 KILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401 (824)
Q Consensus 323 ~~lgL~-~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~ 401 (824)
+.+||. +..++.+++ |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|+++|
T Consensus 394 ~~~~l~~~~~~~~~~~-----LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsH 467 (510)
T PRK09700 394 ELLALKCHSVNQNITE-----LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSS 467 (510)
T ss_pred HhcCCCCCCccCcccc-----CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcC
Confidence 999996 778887765 999999999999999999999999999999999999999999999986 4888888766
Q ss_pred cCchhHHhhcCeEEEEcCCeEEEecCh
Q 003389 402 QPAPETYDLFDDIILLSEGQIVYQGPR 428 (824)
Q Consensus 402 q~~~e~~~lfD~iilL~~G~iv~~G~~ 428 (824)
+ ..++.++||++++|++|+++..++.
T Consensus 468 d-~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 468 E-LPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred C-HHHHHhhCCEEEEEECCEEEEEecC
Confidence 5 4578899999999999999988865
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=373.72 Aligned_cols=207 Identities=21% Similarity=0.284 Sum_probs=173.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
..+|+||||+|+|||.+||+|++|||||||+++|.|+++|. +|+|.+||.++.+... ++.++||||++.+|..
T Consensus 1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~---~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g- 1398 (1560)
T PTZ00243 1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC---GGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG- 1398 (1560)
T ss_pred CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccCCHHHHHhcceEECCCCccccc-
Confidence 35999999999999999999999999999999999999997 9999999999887543 5789999999888765
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||||||+... +.+.+++++++...+.+. . +-.|++..||.||+ ..
T Consensus 1399 TIreNIdp~~--------------------------~~sdeeI~~Al~~a~l~~------~--I~~lp~Gldt~vge-~G 1443 (1560)
T PTZ00243 1399 TVRQNVDPFL--------------------------EASSAEVWAALELVGLRE------R--VASESEGIDSRVLE-GG 1443 (1560)
T ss_pred cHHHHhCccc--------------------------CCCHHHHHHHHHHCCChH------H--HhhCcccccccccC-Cc
Confidence 9999996421 112234455555444322 1 22467788999996 45
Q ss_pred CCCCHHHHHHHHHHHHHHcC-CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 341 RGISGGQKKRVTTGEMLVGT-ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~-p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
..||||||||++|||||+++ |+||+||||||+||+.+...|.+.|++..+ ++|+|++.|+. ++...||+|++|++
T Consensus 1444 ~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~--~~TvI~IAHRl--~ti~~~DrIlVLd~ 1519 (1560)
T PTZ00243 1444 SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS--AYTVITIAHRL--HTVAQYDKIIVMDH 1519 (1560)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC--CCEEEEEeccH--HHHHhCCEEEEEEC
Confidence 56999999999999999995 899999999999999999999999998753 78998887765 57788999999999
Q ss_pred CeEEEecChhhHHH
Q 003389 420 GQIVYQGPRDNVLE 433 (824)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (824)
|+|++.|+++++++
T Consensus 1520 G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1520 GAVAEMGSPRELVM 1533 (1560)
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999863
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=295.97 Aligned_cols=212 Identities=28% Similarity=0.402 Sum_probs=183.5
Q ss_pred ccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCC
Q 003389 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHH 257 (824)
Q Consensus 181 ~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~ 257 (824)
.+++.||+|+|..|++|.+|+++|||||||||||.+++++++.+ +|+|+++|+++..... .+.++.+-|+...-
T Consensus 11 y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~ 87 (252)
T COG4604 11 YGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILKQENHIN 87 (252)
T ss_pred hCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHHHHHHHHHHhhchhh
Confidence 34678999999999999999999999999999999999999987 9999999999976543 36678888988888
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
..+||+|-+.|+.--+..|. +.. ++...++..++.++|++..|...-
T Consensus 88 ~rlTV~dLv~FGRfPYSqGR------------------lt~--------------eD~~~I~~aieyl~L~~l~dryLd- 134 (252)
T COG4604 88 SRLTVRDLVGFGRFPYSQGR------------------LTK--------------EDRRIINEAIEYLHLEDLSDRYLD- 134 (252)
T ss_pred heeEHHHHhhcCCCcccCCC------------------Cch--------------HHHHHHHHHHHHhcccchHHHhHH-
Confidence 89999999999854332221 111 123457888999999998887765
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
+||||||||.-||..++.+.+.++||||.++||...+.++|+.||+++++.++|+|+++|. ...+-.++|.|+-|
T Consensus 135 ----~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHD-INfAS~YsD~IVAl 209 (252)
T COG4604 135 ----ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHD-INFASCYSDHIVAL 209 (252)
T ss_pred ----hcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEec-ccHHHhhhhheeee
Confidence 5999999999999999999999999999999999999999999999999999999998754 55677889999999
Q ss_pred cCCeEEEecChhhHHH
Q 003389 418 SEGQIVYQGPRDNVLE 433 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (824)
.+|+++.+|+++++.+
T Consensus 210 K~G~vv~~G~~~eii~ 225 (252)
T COG4604 210 KNGKVVKQGSPDEIIQ 225 (252)
T ss_pred cCCEEEecCCHHHhcC
Confidence 9999999999998863
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=299.24 Aligned_cols=183 Identities=23% Similarity=0.315 Sum_probs=152.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~lT 261 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (198)
T TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89 (198)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccchHHhhhheEEeccCcccccCCc
Confidence 46999999999999999999999999999999999999887 999999998865432 2367999999988888899
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|.||+.+.....+. + ...++++++.+||++..++.+++
T Consensus 90 v~~~l~~~~~~~~~-----------------------~---------------~~~~~~~l~~~~l~~~~~~~~~~---- 127 (198)
T TIGR01189 90 ALENLHFWAAIHGG-----------------------A---------------QRTIEDALAAVGLTGFEDLPAAQ---- 127 (198)
T ss_pred HHHHHHHHHHHcCC-----------------------c---------------HHHHHHHHHHcCCHHHhcCChhh----
Confidence 99999875321100 0 01245678889998877777764
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
|||||||||+||++++.+|++++|||||+|||..+...+.+.|+++++ .+.|+|+++|++... .+++++.
T Consensus 128 -LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~~---~~~~~~~ 197 (198)
T TIGR01189 128 -LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDLGL---VEARELR 197 (198)
T ss_pred -cCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEEcccccc---cceEEee
Confidence 999999999999999999999999999999999999999999999875 488999999887532 3566654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=369.88 Aligned_cols=270 Identities=18% Similarity=0.283 Sum_probs=185.2
Q ss_pred hhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCc-EEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 98 QDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPK-IEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 98 ~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~-v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
+......+|+.++++.+++. .+ ..-+...+. .+++++|+++.+.
T Consensus 349 ~~a~~a~~ri~~ii~~~~~~-----~~--~~~~~~~~~~~~I~~~nVsf~Y~---------------------------- 393 (1466)
T PTZ00265 349 MKSLEATNSLYEIINRKPLV-----EN--NDDGKKLKDIKKIQFKNVRFHYD---------------------------- 393 (1466)
T ss_pred HHHHHHHHHHHHHHcCCCCC-----CC--CCCCccCCCCCcEEEEEEEEEcC----------------------------
Confidence 44666777777777766551 11 011111221 2688888887531
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEee-CCcccCCCCC---CceEEEEec
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY-CGHELNEFVP---QRTCAYISQ 252 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~-nG~~~~~~~~---~~~i~yv~Q 252 (824)
. ....++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|++ +|+++.+... ++.++||+|
T Consensus 394 --~-~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q 467 (1466)
T PTZ00265 394 --T-RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHNLKDINLKWWRSKIGVVSQ 467 (1466)
T ss_pred --C-CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC---CCeEEEeCCcchhhCCHHHHHHhccEecc
Confidence 0 11246999999999999999999999999999999999999997 999999 5687765432 467999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhc-CCc---hhhHHH----HHh-----HHHHH--------------hcCC-----CCChhH
Q 003389 253 HDLHHGEMTVRETLDFSGRCL-GVG---TRYELL----AEL-----SRREK--------------QAGI-----KPDPEI 300 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~a~~~-~~~---~~~~~~----~~~-----~~~e~--------------~~~i-----~~~~~~ 300 (824)
++.+++ .||+|||.++.... +.. ..+... .+. ..+++ ..-+ .++.+.
T Consensus 468 ~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 546 (1466)
T PTZ00265 468 DPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKD 546 (1466)
T ss_pred cccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCH
Confidence 988887 59999999874210 000 000000 000 00000 0000 001112
Q ss_pred HHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHH
Q 003389 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQ 380 (824)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~ 380 (824)
+++.+++...+.+. . +.+|++.+||.+|+. +..||||||||++|||||+.+|++|+|||||++||+.++..
T Consensus 547 ~~v~~a~~~~~l~~------~--i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~ 617 (1466)
T PTZ00265 547 SEVVDVSKKVLIHD------F--VSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYL 617 (1466)
T ss_pred HHHHHHHHHhCcHH------H--HHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 22333332222111 0 125677889999864 66799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 381 ICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 381 I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
|.+.|+++.+..++|+|++.|++. +.+.||+|++|++|
T Consensus 618 i~~~L~~~~~~~g~TvIiIsHrls--~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 618 VQKTINNLKGNENRITIIIAHRLS--TIRYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHhhcCCCEEEEEeCCHH--HHHhCCEEEEEeCC
Confidence 999999997545789999887764 45789999999986
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=312.16 Aligned_cols=205 Identities=24% Similarity=0.331 Sum_probs=158.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|+||++++|+|+||||||||+++|+|+++|. +|+|.++|+++.... .++.++|++|++.+++ .
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~ 109 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF---DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-G 109 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCC---CCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-c
Confidence 45999999999999999999999999999999999999886 999999999875432 2467999999987776 5
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc--CCCccccccccCc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~ 338 (824)
||+||+...... .. ....++... ...+..++.+ |++...+.
T Consensus 110 tv~~nl~~~~~~----~~----------------------~~~~~~l~~------~~l~~~~~~~~~~l~~~~~~----- 152 (257)
T cd03288 110 SIRFNLDPECKC----TD----------------------DRLWEALEI------AQLKNMVKSLPGGLDAVVTE----- 152 (257)
T ss_pred HHHHhcCcCCCC----CH----------------------HHHHHHHHH------hCcHHHHhhcccccCcEecc-----
Confidence 999998542110 00 000000000 0122344444 44433332
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
..+.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ +.|+|++.|++. ++. .||++++|+
T Consensus 153 ~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sh~~~-~~~-~~dri~~l~ 228 (257)
T cd03288 153 GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFA--DRTVVTIAHRVS-TIL-DADLVLVLS 228 (257)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcC--CCEEEEEecChH-HHH-hCCEEEEEE
Confidence 3457999999999999999999999999999999999999999999998753 789988887765 444 499999999
Q ss_pred CCeEEEecChhhHHH
Q 003389 419 EGQIVYQGPRDNVLE 433 (824)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (824)
+|++++.|+++++.+
T Consensus 229 ~G~i~~~g~~~~~~~ 243 (257)
T cd03288 229 RGILVECDTPENLLA 243 (257)
T ss_pred CCEEEEeCCHHHHHh
Confidence 999999999887643
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=302.28 Aligned_cols=186 Identities=25% Similarity=0.363 Sum_probs=154.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|+++|.++.....++.++|++|++.+++.+||+
T Consensus 15 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 91 (207)
T PRK13539 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA---AGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVA 91 (207)
T ss_pred eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHH
Confidence 46999999999999999999999999999999999999886 999999998754211346789999998888899999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+.+.....+. ....++++++.+||.+..+..++ .|
T Consensus 92 ~~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~L 128 (207)
T PRK13539 92 ENLEFWAAFLGG--------------------------------------EELDIAAALEAVGLAPLAHLPFG-----YL 128 (207)
T ss_pred HHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHcCChh-----hc
Confidence 999875322110 00124568889999877776665 49
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
|||||||++||++|+.+|++|+|||||+|||+.+..++.+.|+++++ .++|+|++.|++. ++.. |+++.+..
T Consensus 129 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 129 SAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA-QGGIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCch-hhcc--CcEEeecC
Confidence 99999999999999999999999999999999999999999999876 4889998877754 4544 88887754
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=318.01 Aligned_cols=223 Identities=23% Similarity=0.342 Sum_probs=165.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|++++. ...+|+|.++|.++... ..++.++|++|+..+
T Consensus 58 ~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l 137 (305)
T PRK14264 58 DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNP 137 (305)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcc
Confidence 35999999999999999999999999999999999998631 02399999999887532 123579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++ .||+||+.+....++.... .....+ ... ...+ .....++.+++.++|.....+..
T Consensus 138 ~~-~tv~enl~~~~~~~~~~~~-~~~~~~------~~~-~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~- 194 (305)
T PRK14264 138 FP-KSIRENISYGPRKHGDINT-GLLARL------LGR-DDKD-------------AEDELVERSLRQAALWDEVNDRL- 194 (305)
T ss_pred cc-ccHHHHHHhHHhhcccccc-cccccc------ccc-CchH-------------HHHHHHHHHHHHcCCchhhhHHh-
Confidence 77 5999999986432210000 000000 000 0000 00123466788888854332222
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE-E
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI-I 415 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i-i 415 (824)
+..++.|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++++ +.|+|++.|++ ..+.++||++ +
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~-~~i~~~~d~i~~ 271 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNM-QQAARISDQTAV 271 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCH-HHHHHhcCEEEE
Confidence 234567999999999999999999999999999999999999999999999975 47888877664 4678899997 5
Q ss_pred EEcCCeEEEecChhhHH
Q 003389 416 LLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (824)
+|++|+++++|+++++.
T Consensus 272 ~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 272 FLTGGELVEYDDTDKIF 288 (305)
T ss_pred EecCCEEEEeCCHHHHH
Confidence 78999999999988763
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=295.38 Aligned_cols=161 Identities=31% Similarity=0.479 Sum_probs=142.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-----CCceEEEEecCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-----PQRTCAYISQHDLHHG 258 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-----~~~~i~yv~Q~d~~~~ 258 (824)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFP 89 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccchhHHHHhhcEEEEecCCccCC
Confidence 46999999999999999999999999999999999999886 999999998875432 2467999999988888
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCc
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (824)
.+|++||+.+
T Consensus 90 ~~t~~~~l~~---------------------------------------------------------------------- 99 (178)
T cd03229 90 HLTVLENIAL---------------------------------------------------------------------- 99 (178)
T ss_pred CCCHHHheee----------------------------------------------------------------------
Confidence 8899887632
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.+.||++++|+
T Consensus 100 ---~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~ 175 (178)
T cd03229 100 ---GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLR 175 (178)
T ss_pred ---cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEe
Confidence 09999999999999999999999999999999999999999999999874468888877654 46777999999999
Q ss_pred CCe
Q 003389 419 EGQ 421 (824)
Q Consensus 419 ~G~ 421 (824)
+|+
T Consensus 176 ~g~ 178 (178)
T cd03229 176 DGK 178 (178)
T ss_pred CCC
Confidence 985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=304.45 Aligned_cols=191 Identities=22% Similarity=0.261 Sum_probs=153.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeC--Cc--ccCCCC-------CCceEEEEec
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC--GH--ELNEFV-------PQRTCAYISQ 252 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~n--G~--~~~~~~-------~~~~i~yv~Q 252 (824)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++ |. ++.... .++.++|++|
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q 97 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQ 97 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEEecCCCccchhhcCHHHHHHHHhcceEEEec
Confidence 46999999999999999999999999999999999999986 9999998 43 433221 1246999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcc-c
Q 003389 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-A 331 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~ 331 (824)
+..+++.+||+|++.+.....+... . + ....+..+++.+||.+. .
T Consensus 98 ~~~~~~~~tv~e~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~ 143 (224)
T TIGR02324 98 FLRVIPRVSALEVVAEPLLERGVPR----------E----------A--------------ARARARELLARLNIPERLW 143 (224)
T ss_pred ccccCCCccHHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHcCCchhhh
Confidence 9989999999999987643221100 0 0 01124567889999753 4
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf 411 (824)
+..++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++.|+ ...+.++|
T Consensus 144 ~~~~~-----~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~-~~~~~~~~ 216 (224)
T TIGR02324 144 HLPPA-----TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIFHD-EEVRELVA 216 (224)
T ss_pred hCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCC-HHHHHHhc
Confidence 55544 5999999999999999999999999999999999999999999999975 47898888776 44666799
Q ss_pred CeEEEEc
Q 003389 412 DDIILLS 418 (824)
Q Consensus 412 D~iilL~ 418 (824)
|+++.+.
T Consensus 217 d~i~~~~ 223 (224)
T TIGR02324 217 DRVMDVT 223 (224)
T ss_pred ceeEecC
Confidence 9998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=304.58 Aligned_cols=197 Identities=25% Similarity=0.354 Sum_probs=160.0
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCC--CCCCHHHHHHHh
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH--GEMTVRETLDFS 269 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~--~~lTV~E~L~f~ 269 (824)
++|++|++++|+||||||||||+++|+|+++|+ +|+|.+||+++.. .++.++|++|++.++ ..+||.||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhc
Confidence 468999999999999999999999999999987 9999999987643 246799999997653 347999999875
Q ss_pred hhhc-CCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 003389 270 GRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQK 348 (824)
Q Consensus 270 a~~~-~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqr 348 (824)
.... +.. . .+.. .....+.++++.+||++..++.++ .||||||
T Consensus 76 ~~~~~~~~------~-----------~~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 119 (223)
T TIGR03771 76 RTGHIGWL------R-----------RPCV--------------ADFAAVRDALRRVGLTELADRPVG-----ELSGGQR 119 (223)
T ss_pred cccccccc------c-----------CCcH--------------HHHHHHHHHHHHhCCchhhcCChh-----hCCHHHH
Confidence 3211 000 0 0000 001134668899999877777665 4999999
Q ss_pred HHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecCh
Q 003389 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPR 428 (824)
Q Consensus 349 qRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~ 428 (824)
|||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|+++|++ .++.++||+++++ +|++++.|+.
T Consensus 120 qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~ 196 (223)
T TIGR03771 120 QRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG-AGTAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTP 196 (223)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCH
Confidence 999999999999999999999999999999999999999875 488999887765 4788899999999 8999999998
Q ss_pred hhHH
Q 003389 429 DNVL 432 (824)
Q Consensus 429 ~~~~ 432 (824)
+++.
T Consensus 197 ~~~~ 200 (223)
T TIGR03771 197 QQLQ 200 (223)
T ss_pred HHhc
Confidence 7753
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=299.17 Aligned_cols=195 Identities=18% Similarity=0.210 Sum_probs=157.4
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEe-eCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT-YCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~-~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
.+|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|. ++|..+ .+.++..+++.+||+
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---sG~i~~~~~~~~----------~~~~~~~l~~~ltv~ 67 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD---EGDFIGLRGDAL----------PLGANSFILPGLTGE 67 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CCCEEEecCcee----------ccccccccCCcCcHH
Confidence 3799999999999999999999999999999999999887 99997 777532 123456678899999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+.+.+..++... . + ..+.+.+.++|+...++.+++ |
T Consensus 68 enl~~~~~~~~~~~----------~----------~-----------------~~~~~~~~~~l~~~~~~~~~~-----l 105 (213)
T PRK15177 68 ENARMMASLYGLDG----------D----------E-----------------FSHFCYQLTQLEQCYTDRVSE-----Y 105 (213)
T ss_pred HHHHHHHHHcCCCH----------H----------H-----------------HHHHHHHHhChhHHhhchHhh-----c
Confidence 99998654332110 0 0 012234566787777777764 9
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEE
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv 423 (824)
|||||||++||++|+.+|++++|||||++||+.++..+.+.|.+..+ +.++|++.|. ..++.++||++++|++|+++
T Consensus 106 S~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~--~~~ii~vsH~-~~~~~~~~d~i~~l~~G~i~ 182 (213)
T PRK15177 106 SVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ--QKGLIVLTHN-PRLIKEHCHAFGVLLHGKIT 182 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh--CCcEEEEECC-HHHHHHhcCeeEEEECCeEE
Confidence 99999999999999999999999999999999999999998866543 3567776554 45777899999999999999
Q ss_pred EecChhhHHHHHHH
Q 003389 424 YQGPRDNVLEFFEH 437 (824)
Q Consensus 424 ~~G~~~~~~~~f~~ 437 (824)
+.|+.++..++++.
T Consensus 183 ~~~~~~~~~~~~~~ 196 (213)
T PRK15177 183 MCEDLAQATALFEQ 196 (213)
T ss_pred EeCCHHHHHHHHHH
Confidence 99999998777654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=339.14 Aligned_cols=197 Identities=20% Similarity=0.239 Sum_probs=163.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCC--C-
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLH--H- 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~--~- 257 (824)
+.+|+|+|++|++|++++|+||||||||||||+|+|+++|+ +|+|.++|.++.... .++.++|++|++.. +
T Consensus 16 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (490)
T PRK10938 16 TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLS 92 (490)
T ss_pred eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhcc
Confidence 45999999999999999999999999999999999999887 999999997764322 12458999997542 1
Q ss_pred -----CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccc
Q 003389 258 -----GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (824)
Q Consensus 258 -----~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d 332 (824)
..+||+|++.+.. +....++.+++.+||++..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~l~~~~l~~~~~ 130 (490)
T PRK10938 93 PGEDDTGRTTAEIIQDEV------------------------------------------KDPARCEQLAQQFGITALLD 130 (490)
T ss_pred cchhhccccHHHhcccch------------------------------------------hHHHHHHHHHHHcCCHhhhh
Confidence 1467777764310 00113456889999988888
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
..+++ |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|++.|+ ..++.++||
T Consensus 131 ~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~-~~~~~~~~d 203 (490)
T PRK10938 131 RRFKY-----LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SGITLVLVLNR-FDEIPDFVQ 203 (490)
T ss_pred CCccc-----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCC-HHHHHhhCC
Confidence 77764 999999999999999999999999999999999999999999999976 47888887765 457889999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
++++|++|+++..|+++++.
T Consensus 204 ~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 204 FAGVLADCTLAETGEREEIL 223 (490)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999987753
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=307.36 Aligned_cols=195 Identities=22% Similarity=0.367 Sum_probs=155.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
..+|+|+|++|++|++++|+||||||||||+++|+|+++|. +|+|.++|+++.... .++.++|++|++.+++ .
T Consensus 27 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~ 102 (226)
T cd03248 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-R 102 (226)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-h
Confidence 35999999999999999999999999999999999999887 999999998775432 2356999999987765 6
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc--CCCccccccccCc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~ 338 (824)
||+||+.++..... . .+..+.. ....++.+++.+ |+++..+..+
T Consensus 103 tv~~nl~~~~~~~~----~---~~~~~~~------------------------~~~~~~~~l~~l~~gl~~~~~~~~--- 148 (226)
T cd03248 103 SLQDNIAYGLQSCS----F---ECVKEAA------------------------QKAHAHSFISELASGYDTEVGEKG--- 148 (226)
T ss_pred hHHHHhccccCCCC----H---HHHHHHH------------------------HHcCcHHHHHhccccccchhhcCC---
Confidence 99999987532110 0 0000000 001234567777 7766555554
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|+++|++. ++. .||+|++|+
T Consensus 149 --~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~-~~d~i~~l~ 222 (226)
T cd03248 149 --SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLS-TVE-RADQILVLD 222 (226)
T ss_pred --CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHH-HHH-hCCEEEEec
Confidence 45999999999999999999999999999999999999999999999864 578888887765 554 599999999
Q ss_pred CCeE
Q 003389 419 EGQI 422 (824)
Q Consensus 419 ~G~i 422 (824)
+|++
T Consensus 223 ~g~i 226 (226)
T cd03248 223 GGRI 226 (226)
T ss_pred CCcC
Confidence 9974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=277.87 Aligned_cols=205 Identities=26% Similarity=0.328 Sum_probs=170.8
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC---------CCCceEEEEec
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF---------VPQRTCAYISQ 252 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~---------~~~~~i~yv~Q 252 (824)
+..++|.||++..+.|+.+.++||||+|||||++.|.=+.-|. +|+..+.|...+-. ..++.+|+|+|
T Consensus 13 g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~---sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfq 89 (242)
T COG4161 13 GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQ 89 (242)
T ss_pred ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC---CCeEEecccccccccCccHHHHHHHHHhhhhhhh
Confidence 4567999999999999999999999999999999998777776 99999988654311 11367999999
Q ss_pred CCCCCCCCCHHHHHHHhh-hhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc
Q 003389 253 HDLHHGEMTVRETLDFSG-RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~a-~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (824)
+..+.|.|||.|||.-+. +..|+ ...+......++|+.|.|.+.+
T Consensus 90 qy~lwphltv~enlieap~kv~gl----------------------------------~~~qa~~~a~ellkrlrl~~~a 135 (242)
T COG4161 90 QYNLWPHLTVQENLIEAPCRVLGL----------------------------------SKDQALARAEKLLKRLRLKPYA 135 (242)
T ss_pred hhccCchhHHHHHHHhhhHHHhCC----------------------------------CHHHHHHHHHHHHHHhcccccc
Confidence 999999999999996542 11111 1111223456789999999999
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf 411 (824)
|..+- .|||||+|||+|||||+.+|.+|++||||++|||+-+.++++.+++++. .|.|-+++.|. ..-....+
T Consensus 136 dr~pl-----hlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~-tgitqvivthe-v~va~k~a 208 (242)
T COG4161 136 DRYPL-----HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE-TGITQVIVTHE-VEVARKTA 208 (242)
T ss_pred ccCce-----ecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh-cCceEEEEEee-hhHHHhhh
Confidence 97765 4999999999999999999999999999999999999999999999986 69998888765 33566789
Q ss_pred CeEEEEcCCeEEEecChhh
Q 003389 412 DDIILLSEGQIVYQGPRDN 430 (824)
Q Consensus 412 D~iilL~~G~iv~~G~~~~ 430 (824)
.+|+.|.+|+||++|+.+.
T Consensus 209 s~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 209 SRVVYMENGHIVEQGDASC 227 (242)
T ss_pred hheEeeecCeeEeecchhh
Confidence 9999999999999999764
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=304.58 Aligned_cols=195 Identities=23% Similarity=0.324 Sum_probs=150.0
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 264 (824)
.+|+|+|++|++|++++|+||||||||||+++|+|+++|. +|+|.++| .++|++|++.+++. ||+|
T Consensus 51 ~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g----------~i~yv~q~~~l~~~-tv~e 116 (282)
T cd03291 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSG----------RISFSSQFSWIMPG-TIKE 116 (282)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC----------EEEEEeCccccccc-CHHH
Confidence 5899999999999999999999999999999999999987 99999988 38999999877764 9999
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
|+.+..... . . . .....++. ..+..++.+ ....++.++. ..+.||
T Consensus 117 nl~~~~~~~---~-~----~---------------~~~~l~~~---------~l~~~l~~~--~~~~~~~~~~-~~~~LS 161 (282)
T cd03291 117 NIIFGVSYD---E-Y----R---------------YKSVVKAC---------QLEEDITKF--PEKDNTVLGE-GGITLS 161 (282)
T ss_pred HhhcccccC---H-H----H---------------HHHHHHHh---------CCHHHHHhc--cccccceecC-CCCcCC
Confidence 998753210 0 0 0 00000000 011122222 2223444432 345799
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEE
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFL-KQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L-~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv 423 (824)
|||||||+||++|+.+|++|+|||||+|||+.+...+.+.+ +++. .+.|+|++.|++. ++ ..||++++|++|+++
T Consensus 162 gGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~--~~~tIiiisH~~~-~~-~~~d~i~~l~~G~i~ 237 (282)
T cd03291 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM--ANKTRILVTSKME-HL-KKADKILILHEGSSY 237 (282)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh--CCCEEEEEeCChH-HH-HhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999865 5554 3678888877654 44 579999999999999
Q ss_pred EecChhhHH
Q 003389 424 YQGPRDNVL 432 (824)
Q Consensus 424 ~~G~~~~~~ 432 (824)
+.|+++++.
T Consensus 238 ~~g~~~~~~ 246 (282)
T cd03291 238 FYGTFSELQ 246 (282)
T ss_pred EECCHHHHH
Confidence 999988764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=338.70 Aligned_cols=221 Identities=19% Similarity=0.250 Sum_probs=173.5
Q ss_pred HhhhcccccCcc--cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC-CCCCcceEeeCCcccCCCC----
Q 003389 170 ALGLLHLVPSKK--RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK-DLRASGKITYCGHELNEFV---- 242 (824)
Q Consensus 170 ~l~~~~~~~~~~--~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~-~~~~sG~I~~nG~~~~~~~---- 242 (824)
++++.++...+. +++.+|+|+|++|++||+++|+|||||||||||++|+|+++| . +|+|.++|+++....
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---~G~i~~~g~~~~~~~~~~~ 333 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF---EGNVFINGKPVDIRNPAQA 333 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CeEEEECCEECCCCCHHHH
Confidence 355566654432 235699999999999999999999999999999999999985 5 899999998875321
Q ss_pred CCceEEEEecCC---CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHH
Q 003389 243 PQRTCAYISQHD---LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTD 319 (824)
Q Consensus 243 ~~~~i~yv~Q~d---~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (824)
.++.++|++|+. .+++.+||+||+.++.. ....... ..... +....++
T Consensus 334 ~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~-~~~~~~~----~~~~~------------------------~~~~~~~ 384 (500)
T TIGR02633 334 IRAGIAMVPEDRKRHGIVPILGVGKNITLSVL-KSFCFKM----RIDAA------------------------AELQIIG 384 (500)
T ss_pred HhCCCEEcCcchhhCCcCCCCCHHHHhcchhh-hhhccCC----cCCHH------------------------HHHHHHH
Confidence 135699999985 57889999999987531 0000000 00000 0112356
Q ss_pred HHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 003389 320 YVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV 398 (824)
Q Consensus 320 ~iL~~lgL~~-~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIi 398 (824)
.+++.+||.+ ..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+
T Consensus 385 ~~l~~~~l~~~~~~~~~~~-----LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii 458 (500)
T TIGR02633 385 SAIQRLKVKTASPFLPIGR-----LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ-EGVAIIV 458 (500)
T ss_pred HHHHhcCccCCCccCcccc-----CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh-CCCEEEE
Confidence 7889999964 56777764 999999999999999999999999999999999999999999999986 4888888
Q ss_pred EEccCchhHHhhcCeEEEEcCCeEEEecChh
Q 003389 399 ALLQPAPETYDLFDDIILLSEGQIVYQGPRD 429 (824)
Q Consensus 399 si~q~~~e~~~lfD~iilL~~G~iv~~G~~~ 429 (824)
++|+ ..++.++||++++|++|+++..++.+
T Consensus 459 vsHd-~~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 459 VSSE-LAEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred ECCC-HHHHHHhCCEEEEEECCEEEEEEccc
Confidence 7655 55788999999999999999877654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=298.07 Aligned_cols=184 Identities=25% Similarity=0.311 Sum_probs=149.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|+.|++|++++|+||||||||||+++|+|+++|. +|+|.++|.++.... .++.++|++|++.+++ .
T Consensus 21 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~ 96 (207)
T cd03369 21 PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE---EGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-G 96 (207)
T ss_pred cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-c
Confidence 35999999999999999999999999999999999999887 999999999875432 2467999999987776 5
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.+... .. .+ .+.+.++ + + ...
T Consensus 97 tv~~~l~~~~~---~~-----------------------~~---------------~~~~~l~---~----~-----~~~ 123 (207)
T cd03369 97 TIRSNLDPFDE---YS-----------------------DE---------------EIYGALR---V----S-----EGG 123 (207)
T ss_pred cHHHHhcccCC---CC-----------------------HH---------------HHHHHhh---c----c-----CCC
Confidence 99999965210 00 00 0111222 1 2 234
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
+.|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++. .+.|+|++.|++. ++.. ||++++|++|
T Consensus 124 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~th~~~-~~~~-~d~v~~l~~g 199 (207)
T cd03369 124 LNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF--TNSTILTIAHRLR-TIID-YDKILVMDAG 199 (207)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHH-HHhh-CCEEEEEECC
Confidence 5699999999999999999999999999999999999999999999984 3788888877655 4544 9999999999
Q ss_pred eEEEecCh
Q 003389 421 QIVYQGPR 428 (824)
Q Consensus 421 ~iv~~G~~ 428 (824)
+++.+|++
T Consensus 200 ~i~~~g~~ 207 (207)
T cd03369 200 EVKEYDHP 207 (207)
T ss_pred EEEecCCC
Confidence 99988763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=335.39 Aligned_cols=209 Identities=24% Similarity=0.354 Sum_probs=169.4
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCC---CCC
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHD---LHH 257 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d---~~~ 257 (824)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++|++|++ .++
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 342 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLV 342 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCc
Confidence 4799999999999999999999999999999999999887 9999999988754322 34699999995 577
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccccc
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 336 (824)
+.+||.||+.+........ ... ..... +....++++++.+||. +..++.++
T Consensus 343 ~~~tv~e~l~~~~~~~~~~-~~~---~~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 394 (501)
T PRK10762 343 LGMSVKENMSLTALRYFSR-AGG---SLKHA------------------------DEQQAVSDFIRLFNIKTPSMEQAIG 394 (501)
T ss_pred CCCcHHHHhhhhhhhhhcc-ccc---ccCHH------------------------HHHHHHHHHHHhcCCCCCCccCchh
Confidence 8899999998753100000 000 00000 0012356789999995 66777776
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+ |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|+++|+ ..++.++||++++
T Consensus 395 ~-----LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tviivtHd-~~~~~~~~d~v~~ 467 (501)
T PRK10762 395 L-----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKA-EGLSIILVSSE-MPEVLGMSDRILV 467 (501)
T ss_pred h-----CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHH-CCCEEEEEcCC-HHHHHhhCCEEEE
Confidence 4 999999999999999999999999999999999999999999999976 48888887655 5588899999999
Q ss_pred EcCCeEEEecChhhH
Q 003389 417 LSEGQIVYQGPRDNV 431 (824)
Q Consensus 417 L~~G~iv~~G~~~~~ 431 (824)
|++|+++..|+.+++
T Consensus 468 l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 468 MHEGRISGEFTREQA 482 (501)
T ss_pred EECCEEEEEeccccC
Confidence 999999999987765
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=336.62 Aligned_cols=209 Identities=20% Similarity=0.332 Sum_probs=169.5
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCC---CCC
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHD---LHH 257 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d---~~~ 257 (824)
.+++|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++|++|++ .++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 343 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT---AGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGII 343 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC---CceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCc
Confidence 4899999999999999999999999999999999999887 9999999987753211 35689999985 488
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccccc
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 336 (824)
+.+||.||+.++......... .. .... .....++.+++.+||. +..++.++
T Consensus 344 ~~~tv~e~l~~~~~~~~~~~~--~~--~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 395 (501)
T PRK11288 344 PVHSVADNINISARRHHLRAG--CL--INNR------------------------WEAENADRFIRSLNIKTPSREQLIM 395 (501)
T ss_pred CCCCHHHHhccccchhhcccc--cc--cChH------------------------HHHHHHHHHHHhcCcccCCccCccc
Confidence 899999999875321100000 00 0000 0011346689999994 67888887
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+ |||||||||+||++|+.+|++|||||||+|||+.++.++++.|+++++ .|.|+|+++|+ ..++.++||++++
T Consensus 396 ~-----LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd-~~~~~~~~d~i~~ 468 (501)
T PRK11288 396 N-----LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFVSSD-LPEVLGVADRIVV 468 (501)
T ss_pred c-----CCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEEECCC-HHHHHhhCCEEEE
Confidence 5 999999999999999999999999999999999999999999999986 48888887654 5678899999999
Q ss_pred EcCCeEEEecChhhH
Q 003389 417 LSEGQIVYQGPRDNV 431 (824)
Q Consensus 417 L~~G~iv~~G~~~~~ 431 (824)
|++|++++.|+++++
T Consensus 469 l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 469 MREGRIAGELAREQA 483 (501)
T ss_pred EECCEEEEEEccccC
Confidence 999999999987653
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=290.06 Aligned_cols=156 Identities=26% Similarity=0.455 Sum_probs=137.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+.+++|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~- 90 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG- 90 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHHHHHhheEEECCCCccccC-
Confidence 45999999999999999999999999999999999999987 999999998876432 24679999998766653
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+
T Consensus 91 tv~~~l-------------------------------------------------------------------------- 96 (173)
T cd03246 91 SIAENI-------------------------------------------------------------------------- 96 (173)
T ss_pred cHHHHC--------------------------------------------------------------------------
Confidence 766532
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++ +.||++++|++|
T Consensus 97 --LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~G 171 (173)
T cd03246 97 --LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRPE-TL-ASADRILVLEDG 171 (173)
T ss_pred --cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HH-HhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999975 4889999887764 44 689999999999
Q ss_pred eE
Q 003389 421 QI 422 (824)
Q Consensus 421 ~i 422 (824)
++
T Consensus 172 ~i 173 (173)
T cd03246 172 RV 173 (173)
T ss_pred CC
Confidence 74
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=324.73 Aligned_cols=216 Identities=30% Similarity=0.376 Sum_probs=180.3
Q ss_pred hhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCC----ce
Q 003389 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RT 246 (824)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~----~~ 246 (824)
++..++.+++ +..++|+||||++++||+++|+|.||||||||+|+|+|.++|+ +|+|.+||++.....++ .-
T Consensus 9 l~~~~i~K~F-ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 9 LELRGISKSF-GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeecceEEc-CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCC
Confidence 3444554443 4568999999999999999999999999999999999999998 99999999988654443 45
Q ss_pred EEEEecCCCCCCCCCHHHHHHHhhhhcCC-chhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc
Q 003389 247 CAYISQHDLHHGEMTVRETLDFSGRCLGV-GTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL 325 (824)
Q Consensus 247 i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~-~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l 325 (824)
|+.|+|+..+.|+|||.||+.++...... + + + +.. .....+..+|+.+
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g----~---i-------------d~~-----------~m~~~A~~~l~~l 133 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFG----L---I-------------DRK-----------AMRRRARELLARL 133 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCC----c---c-------------CHH-----------HHHHHHHHHHHHc
Confidence 89999999999999999999876443221 1 0 0 000 0122456789999
Q ss_pred CCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCch
Q 003389 326 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP 405 (824)
Q Consensus 326 gL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~ 405 (824)
|+....+++|++ ||+||||.|.||+||..++++|+|||||+.|+...+..+.+.++++.+ .|.++|+++ |-.+
T Consensus 134 g~~~~~~~~v~~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~ii~IS-Hrl~ 206 (500)
T COG1129 134 GLDIDPDTLVGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA-QGVAIIYIS-HRLD 206 (500)
T ss_pred CCCCChhhhhhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEc-CcHH
Confidence 996558888886 999999999999999999999999999999999999999999999986 588888865 5788
Q ss_pred hHHhhcCeEEEEcCCeEEEecCh
Q 003389 406 ETYDLFDDIILLSEGQIVYQGPR 428 (824)
Q Consensus 406 e~~~lfD~iilL~~G~iv~~G~~ 428 (824)
|++++||||.||.||+.+..++.
T Consensus 207 Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 207 EVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHhcCEEEEEeCCEEeeeccc
Confidence 99999999999999999988873
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=296.78 Aligned_cols=194 Identities=22% Similarity=0.342 Sum_probs=147.8
Q ss_pred CcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-------CCceEEEEe
Q 003389 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYIS 251 (824)
Q Consensus 179 ~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~i~yv~ 251 (824)
.+.+.+++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++
T Consensus 9 ~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~ 85 (218)
T cd03290 9 SWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL---EGKVHWSNKNESEPSFEATRSRNRYSVAYAA 85 (218)
T ss_pred ecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCcccccccccccchhhcceEEEEc
Confidence 3333457999999999999999999999999999999999999886 999999998765321 135699999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc--
Q 003389 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-- 329 (824)
Q Consensus 252 Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-- 329 (824)
|++.++ ..||+||+.+..... . + + ...+++.++|.+
T Consensus 86 q~~~~~-~~t~~~nl~~~~~~~-------------~-~---------~------------------~~~~~~~~~l~~~~ 123 (218)
T cd03290 86 QKPWLL-NATVEENITFGSPFN-------------K-Q---------R------------------YKAVTDACSLQPDI 123 (218)
T ss_pred CCCccc-cccHHHHHhhcCcCC-------------H-H---------H------------------HHHHHHHhCcHHHH
Confidence 998776 579999998753110 0 0 0 011122222221
Q ss_pred -----cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHH--HHHHHHHhCCcEEEEEEcc
Q 003389 330 -----CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK--FLKQMVHILDVTMIVALLQ 402 (824)
Q Consensus 330 -----~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~--~L~~l~~~~~~tvIisi~q 402 (824)
..++..+ ..+..|||||||||+||++|+.+|++|||||||+|||+.+...+++ .++.+.+ .+.|+|++.|+
T Consensus 124 ~~~~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~-~~~tii~~sH~ 201 (218)
T cd03290 124 DLLPFGDQTEIG-ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD-DKRTLVLVTHK 201 (218)
T ss_pred HhCcCccccCcc-cCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhc-CCCEEEEEeCC
Confidence 1122222 2345699999999999999999999999999999999999999998 5666543 57899998887
Q ss_pred CchhHHhhcCeEEEEcCCe
Q 003389 403 PAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 403 ~~~e~~~lfD~iilL~~G~ 421 (824)
+. .+ ..||++++|++|.
T Consensus 202 ~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 202 LQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred hH-HH-hhCCEEEEecCCC
Confidence 65 44 5699999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=299.56 Aligned_cols=183 Identities=27% Similarity=0.282 Sum_probs=150.8
Q ss_pred ccccceeeEEe-----CCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCC
Q 003389 185 RILKDVSGIVK-----PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGE 259 (824)
Q Consensus 185 ~IL~~vs~~I~-----~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~ 259 (824)
..++|+++.++ +|++++|+|||||||||||++|+|.++|+ +|+|.++|. .++|++|+....+.
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---~G~i~~~g~---------~i~~~~q~~~~~~~ 75 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIELD---------TVSYKPQYIKADYE 75 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCc---------eEEEecccccCCCC
Confidence 35667777765 79999999999999999999999999987 999999984 58999998877788
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+|++.+.....+. . ....+++++.+||++..++.++
T Consensus 76 ~tv~e~l~~~~~~~~~---------------------~-----------------~~~~~~~l~~l~l~~~~~~~~~--- 114 (246)
T cd03237 76 GTVRDLLSSITKDFYT---------------------H-----------------PYFKTEIAKPLQIEQILDREVP--- 114 (246)
T ss_pred CCHHHHHHHHhhhccc---------------------c-----------------HHHHHHHHHHcCCHHHhhCChh---
Confidence 9999999764211000 0 0013457888999887777765
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++++|||||++||+.++..+.+.|+++++..++|+|++.|+ ..++..+||++++|++
T Consensus 115 --~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd-~~~~~~~~d~i~~l~~ 191 (246)
T cd03237 115 --ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD-IIMIDYLADRLIVFEG 191 (246)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEcC
Confidence 4999999999999999999999999999999999999999999999987567888887765 4577789999999976
Q ss_pred CeEE
Q 003389 420 GQIV 423 (824)
Q Consensus 420 G~iv 423 (824)
+..+
T Consensus 192 ~~~~ 195 (246)
T cd03237 192 EPSV 195 (246)
T ss_pred CCee
Confidence 5443
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=332.60 Aligned_cols=190 Identities=18% Similarity=0.213 Sum_probs=154.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
.++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 336 ~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ 411 (547)
T PRK10522 336 GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFD-Q 411 (547)
T ss_pred CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCCCCHHHHhhheEEEecChhHHH-H
Confidence 35899999999999999999999999999999999999997 9999999999876542 468999999876665 4
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCc--
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE-- 338 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~-- 338 (824)
|++|| . .. .+ ...+++.++.+++....+. ++.
T Consensus 412 ti~~n---~-----~~---------------------~~---------------~~~~~~~~~~~~l~~~~~~--~~~~~ 445 (547)
T PRK10522 412 LLGPE---G-----KP---------------------AN---------------PALVEKWLERLKMAHKLEL--EDGRI 445 (547)
T ss_pred hhccc---c-----Cc---------------------hH---------------HHHHHHHHHHcCCchhhhc--cccCC
Confidence 77776 1 00 00 0012345667777654332 221
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
....||||||||++|||+++.+|++|+|||||++||+.++..+.+.|.+..+..++|+|++.|++ ++...||+|++|+
T Consensus 446 ~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~ 523 (547)
T PRK10522 446 SNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMR 523 (547)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEE
Confidence 13579999999999999999999999999999999999999999999876543478999988876 5678899999999
Q ss_pred CCeEEEe
Q 003389 419 EGQIVYQ 425 (824)
Q Consensus 419 ~G~iv~~ 425 (824)
+|++++.
T Consensus 524 ~G~i~e~ 530 (547)
T PRK10522 524 NGQLSEL 530 (547)
T ss_pred CCEEEEe
Confidence 9999866
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=294.90 Aligned_cols=182 Identities=20% Similarity=0.256 Sum_probs=151.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--CCCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~i~yv~Q~d~~~~~lT 261 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++... ..++.++|++|+..+++.+|
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 90 (200)
T PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE---KGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLT 90 (200)
T ss_pred eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeeEEECCCccccCHHHHHhheEEeccccccCcCCC
Confidence 46999999999999999999999999999999999999987 99999999887531 12467999999888888999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.+..... .+ ...++++++.+++.+..++.++
T Consensus 91 v~~~~~~~~~~~----------------------~~-----------------~~~~~~~l~~~~l~~~~~~~~~----- 126 (200)
T PRK13540 91 LRENCLYDIHFS----------------------PG-----------------AVGITELCRLFSLEHLIDYPCG----- 126 (200)
T ss_pred HHHHHHHHHhcC----------------------cc-----------------hHHHHHHHHHcCCchhhhCChh-----
Confidence 999998753110 00 0124567888999877776665
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
.||||||||++||++++.+|++|+|||||+|||+.+...+.+.|+++++ .+.|+|++.|++. ..+.+|...
T Consensus 127 ~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 127 LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCch--hccccchhh
Confidence 4999999999999999999999999999999999999999999999865 4889999887753 445566543
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=290.42 Aligned_cols=161 Identities=29% Similarity=0.479 Sum_probs=140.6
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--CCCceEEEEecCCCCCCCCCH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~i~yv~Q~d~~~~~lTV 262 (824)
++|+|+|++|++||+++|+|||||||||||++|+|..+|. +|+|.++|.++... ..++.++|++|++.+++ .||
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 91 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTL 91 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccH
Confidence 5999999999999999999999999999999999999886 99999999876432 12467999999877665 588
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+ ...
T Consensus 92 ~~~i-------------------------------------------------------------------------~~~ 98 (178)
T cd03247 92 RNNL-------------------------------------------------------------------------GRR 98 (178)
T ss_pred HHhh-------------------------------------------------------------------------ccc
Confidence 7765 013
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++. .+.|+|++.|++. ++ ..||++++|++|++
T Consensus 99 LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i 174 (178)
T cd03247 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL--KDKTLIWITHHLT-GI-EHMDKILFLENGKI 174 (178)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-HH-HhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999985 3788888877765 45 46999999999999
Q ss_pred EEec
Q 003389 423 VYQG 426 (824)
Q Consensus 423 v~~G 426 (824)
++.|
T Consensus 175 ~~~~ 178 (178)
T cd03247 175 IMQG 178 (178)
T ss_pred EecC
Confidence 8765
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=293.86 Aligned_cols=185 Identities=27% Similarity=0.381 Sum_probs=141.1
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 264 (824)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++| .++|++|++.++ .+||+|
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~---~G~i~~~g----------~i~~~~q~~~l~-~~t~~e 84 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG----------SIAYVSQEPWIQ-NGTIRE 84 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CCeEEEcC----------EEEEEecCchhc-cCcHHH
Confidence 6999999999999999999999999999999999999987 99999998 599999998776 569999
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
|+.+..... . +...++....+ ....++.+ +...++.+. ...+.||
T Consensus 85 nl~~~~~~~---~-----------------------~~~~~~~~~~~------l~~~~~~~--~~~~~~~~~-~~~~~lS 129 (204)
T cd03250 85 NILFGKPFD---E-----------------------ERYEKVIKACA------LEPDLEIL--PDGDLTEIG-EKGINLS 129 (204)
T ss_pred HhccCCCcC---H-----------------------HHHHHHHHHcC------cHHHHHhc--cCcccceec-CCCCcCC
Confidence 998753210 0 00000000000 01112222 112233332 2356799
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-FLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~-~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
||||||++||++|+.+|++++|||||+|||+.+...+.+ .++++.+ .+.|+|++.|++. .+.. +|++++|++|+
T Consensus 130 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~-~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 130 GGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL-NNKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-CCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 999999999999999999999999999999999999998 4666655 3789999888764 4555 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=290.51 Aligned_cols=166 Identities=33% Similarity=0.532 Sum_probs=138.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++|++|
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~~i~~~~q-------- 80 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKELARKIAYVPQ-------- 80 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCcCCHHHHHHHHhHHHH--------
Confidence 46999999999999999999999999999999999999887 9999999987754321 123555555
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
+++.+||.+..++.+
T Consensus 81 ------------------------------------------------------------~l~~~gl~~~~~~~~----- 95 (180)
T cd03214 81 ------------------------------------------------------------ALELLGLAHLADRPF----- 95 (180)
T ss_pred ------------------------------------------------------------HHHHcCCHhHhcCCc-----
Confidence 234455554444444
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.+.|+|++.|++. ++.++||++++|++|
T Consensus 96 ~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g 174 (180)
T cd03214 96 NELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDG 174 (180)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 3599999999999999999999999999999999999999999999997644778888776654 677899999999999
Q ss_pred eEEEec
Q 003389 421 QIVYQG 426 (824)
Q Consensus 421 ~iv~~G 426 (824)
++++.|
T Consensus 175 ~i~~~~ 180 (180)
T cd03214 175 RIVAQG 180 (180)
T ss_pred EEEecC
Confidence 998754
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=361.74 Aligned_cols=206 Identities=25% Similarity=0.263 Sum_probs=169.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
.++|+|||++|+|||.+||+|++|||||||+++|.|+++ . +|+|.+||.++..... ++.++||||++.+|+.
T Consensus 1232 ~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~---~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G- 1306 (1490)
T TIGR01271 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T---EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG- 1306 (1490)
T ss_pred cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-
Confidence 469999999999999999999999999999999999986 4 8999999999987543 5789999999988875
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||||||+.... .+.+++++++...+... . +-.+++..||.||+ .+
T Consensus 1307 TIR~NLdp~~~--------------------------~tdeei~~aL~~~~L~~------~--i~~lp~GLdt~v~e-~G 1351 (1490)
T TIGR01271 1307 TFRKNLDPYEQ--------------------------WSDEEIWKVAEEVGLKS------V--IEQFPDKLDFVLVD-GG 1351 (1490)
T ss_pred CHHHHhCcccC--------------------------CCHHHHHHHHHHCCCHH------H--HHhCcccccccccc-CC
Confidence 99999964210 11223334433332211 1 12456678999986 45
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
..||||||||++|||||+++|+||+|||||++||..+...|.+.|++..+ ++|+|++.|.+ ++...||+|++|++|
T Consensus 1352 ~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~--~~TvI~IaHRl--~ti~~~DrIlvL~~G 1427 (1490)
T TIGR01271 1352 YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS--NCTVILSEHRV--EALLECQQFLVIEGS 1427 (1490)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecCH--HHHHhCCEEEEEECC
Confidence 66999999999999999999999999999999999999999999998753 78999887765 567779999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
+|++.|+++++++
T Consensus 1428 ~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1428 SVKQYDSIQKLLN 1440 (1490)
T ss_pred EEEEeCCHHHHHc
Confidence 9999999998863
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=331.34 Aligned_cols=205 Identities=20% Similarity=0.289 Sum_probs=166.8
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCC---CCCC
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHD---LHHG 258 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d---~~~~ 258 (824)
+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++|++|+. .+++
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence 699999999999999999999999999999999999887 9999999998754322 24699999974 4788
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccccccC
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGD 337 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~ 337 (824)
.+||.||+....... .... . .+ . .....++++|+.+||+ ...++.+++
T Consensus 355 ~~t~~~~l~~~~~~~-~~~~------~---------~~-~--------------~~~~~~~~~l~~~~l~~~~~~~~~~~ 403 (510)
T PRK15439 355 DAPLAWNVCALTHNR-RGFW------I---------KP-A--------------RENAVLERYRRALNIKFNHAEQAART 403 (510)
T ss_pred CCcHHHHHHhhhhhh-hccc------c---------Ch-H--------------HHHHHHHHHHHHcCCCCCCccCcccc
Confidence 899999996421100 0000 0 00 0 0011356789999997 677877764
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++++ .+.|+|++.|+ ..++.++||++++|
T Consensus 404 -----LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tiIivsHd-~~~i~~~~d~i~~l 476 (510)
T PRK15439 404 -----LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA-QNVAVLFISSD-LEEIEQMADRVLVM 476 (510)
T ss_pred -----CCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh-CCCEEEEECCC-HHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999987 47888887654 56888999999999
Q ss_pred cCCeEEEecChhhH
Q 003389 418 SEGQIVYQGPRDNV 431 (824)
Q Consensus 418 ~~G~iv~~G~~~~~ 431 (824)
++|+++..|.++++
T Consensus 477 ~~G~i~~~~~~~~~ 490 (510)
T PRK15439 477 HQGEISGALTGAAI 490 (510)
T ss_pred ECCEEEEEEccccC
Confidence 99999998877654
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=276.16 Aligned_cols=195 Identities=24% Similarity=0.392 Sum_probs=165.6
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHG 258 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~ 258 (824)
.+.+||+++|+.+.+||..+|.||||||||||||+++.+..|+ +|++++.|++++...+ +.+++|+.|.+.+|+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 3567999999999999999999999999999999999999997 9999999999987655 467999999999999
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc-cccccC
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA-DTMVGD 337 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~-dt~vg~ 337 (824)
+ ||++|+.|..+.+.- +||++ .....|+.++|++.. +..+
T Consensus 91 ~-tVeDNlifP~~~r~r-------------------r~dr~-----------------aa~~llar~~l~~~~L~k~i-- 131 (223)
T COG4619 91 D-TVEDNLIFPWQIRNR-------------------RPDRA-----------------AALDLLARFALPDSILTKNI-- 131 (223)
T ss_pred c-chhhccccchHHhcc-------------------CCChH-----------------HHHHHHHHcCCchhhhcchh--
Confidence 8 999999997654421 22221 123477888887543 3333
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
..||||||||++|+|-|..-|+||+||||||+||..++..|-+.|-++.+..++.++-++|.+ .+..+.||+++-+
T Consensus 132 ---t~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl 207 (223)
T COG4619 132 ---TELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITL 207 (223)
T ss_pred ---hhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEe
Confidence 459999999999999999999999999999999999999999999999876677777766655 4778999999999
Q ss_pred cCCeE
Q 003389 418 SEGQI 422 (824)
Q Consensus 418 ~~G~i 422 (824)
..|++
T Consensus 208 ~~G~~ 212 (223)
T COG4619 208 QPGHA 212 (223)
T ss_pred ccCcc
Confidence 99986
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=281.60 Aligned_cols=153 Identities=32% Similarity=0.516 Sum_probs=132.4
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCCC
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~lT 261 (824)
.+|+|+|++|++|++++|+||||||||||+++|+|+++|. +|+|.++|+++.... .++.++|++|++.+++ .|
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t 91 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GT 91 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-ch
Confidence 6999999999999999999999999999999999999986 999999998875432 1356999999875543 35
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|.||+
T Consensus 92 ~~e~l--------------------------------------------------------------------------- 96 (171)
T cd03228 92 IRENI--------------------------------------------------------------------------- 96 (171)
T ss_pred HHHHh---------------------------------------------------------------------------
Confidence 54321
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++.+ ++|+|++.|++. ++.. ||++++|++|+
T Consensus 97 -LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 97 -LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred -hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC--CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 899999999999999999999999999999999999999999999853 688888877654 5555 99999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=297.95 Aligned_cols=209 Identities=24% Similarity=0.368 Sum_probs=178.1
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC------CceEEEEecCC--
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHD-- 254 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~~i~yv~Q~d-- 254 (824)
...++++||+++++||.++|+|.||||||||-.+|.+++++ +|+|.|+|++++.... ++.+-.|+||+
T Consensus 299 ~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s----~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPyg 374 (534)
T COG4172 299 HLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYG 374 (534)
T ss_pred heEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc----CceEEECCccccccChhhhhhhhhhceEEEeCCCC
Confidence 45689999999999999999999999999999999999876 7999999999875432 46789999997
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
.+-|.|||.+-+.-+.+.+.+. +++.| ...++.++|+..||+...
T Consensus 375 SLsPRmtV~qII~EGL~vh~~~--------ls~~e------------------------R~~rv~~aL~EVGLDp~~--- 419 (534)
T COG4172 375 SLSPRMTVGQIIEEGLRVHEPK--------LSAAE------------------------RDQRVIEALEEVGLDPAT--- 419 (534)
T ss_pred CCCcccCHHHHhhhhhhhcCCC--------CCHHH------------------------HHHHHHHHHHHcCCChhH---
Confidence 5789999999999887766532 11221 123466789999997432
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
-++++.+.|||||||++||||++.+|++++||||||+||-+-+.+|+++|+++.++.+.+-+++. |+..-+-.+||+|
T Consensus 420 -r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFIS-HDL~VvrAl~~~v 497 (534)
T COG4172 420 -RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFIS-HDLAVVRALCHRV 497 (534)
T ss_pred -hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEe-ccHHHHHHhhceE
Confidence 13456679999999999999999999999999999999999999999999999998888888864 5666788899999
Q ss_pred EEEcCCeEEEecChhhHH
Q 003389 415 ILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (824)
+||.+|+||++|+.+++.
T Consensus 498 iVm~~GkiVE~G~~~~if 515 (534)
T COG4172 498 IVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred EEEeCCEEeeeCCHHHHh
Confidence 999999999999999884
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=286.08 Aligned_cols=178 Identities=21% Similarity=0.291 Sum_probs=145.8
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 264 (824)
.++ ++|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... ++.++|++|+..+++.+||+|
T Consensus 15 ~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~-~~~~~~~~~~~~~~~~~tv~~ 89 (195)
T PRK13541 15 NLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS---SGNIYYKNCNINNIA-KPYCTYIGHNLGLKLEMTVFE 89 (195)
T ss_pred EEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCcccChhh-hhhEEeccCCcCCCccCCHHH
Confidence 355 499999999999999999999999999999999987 999999999875432 356899999988888899999
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
|+.+.....+ ....++.+++.+|+++..++.++ .||
T Consensus 90 ~l~~~~~~~~---------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS 125 (195)
T PRK13541 90 NLKFWSEIYN---------------------------------------SAETLYAAIHYFKLHDLLDEKCY-----SLS 125 (195)
T ss_pred HHHHHHHhcc---------------------------------------cHHHHHHHHHHcCCHhhhccChh-----hCC
Confidence 9987532110 00123557788899877776655 499
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
||||||++||++++.+|++|+|||||+|||+.++..+.+.|++..+ .+.|+|++.|++. + ...+|.|
T Consensus 126 ~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~-~-i~~~~~~ 192 (195)
T PRK13541 126 SGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKAN-SGGIVLLSSHLES-S-IKSAQIL 192 (195)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCcc-c-cchhhee
Confidence 9999999999999999999999999999999999999999987654 5789999887764 2 3335554
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=277.76 Aligned_cols=150 Identities=27% Similarity=0.450 Sum_probs=132.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|. +.++|++|++.++ .+||+
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~--------~~i~~~~q~~~~~-~~tv~ 81 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEG--------EDLLFLPQRPYLP-LGTLR 81 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCC--------ceEEEECCCCccc-cccHH
Confidence 46999999999999999999999999999999999999887 999999873 5799999987654 67999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+.+. ..+.|
T Consensus 82 ~nl~~~---------------------------------------------------------------------~~~~L 92 (166)
T cd03223 82 EQLIYP---------------------------------------------------------------------WDDVL 92 (166)
T ss_pred HHhhcc---------------------------------------------------------------------CCCCC
Confidence 998541 01359
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
|||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++ +.|+|++.|++. ....||++++|++|
T Consensus 93 S~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 93 SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 999999999999999999999999999999999999999999875 478999888864 45799999999875
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=325.89 Aligned_cols=220 Identities=23% Similarity=0.274 Sum_probs=164.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+++|+||||+|++|++++|+|||||||||||++|+|.++|+ +|+|.+++. ..++||+|++.+++.+||.
T Consensus 20 ~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~---~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv~ 88 (556)
T PRK11819 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---EGEARPAPG--------IKVGYLPQEPQLDPEKTVR 88 (556)
T ss_pred CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC--------CEEEEEecCCCCCCCCcHH
Confidence 56999999999999999999999999999999999999987 999999752 4699999999889999999
Q ss_pred HHHHHhhhh-cCCchhhHHHHHhHHHHHhcCCCCChhH-------HHHHHHHHHhc-cchhhhHHHHHHHcCCCcccccc
Q 003389 264 ETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEI-------DAFMKAVAVAG-QETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 264 E~L~f~a~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~~-------~~~~~~~~~~~-~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
||+.++... .+. .....+...... .+..+. +...+.....+ .+....++.+++.+||+. .+..
T Consensus 89 e~l~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~ 160 (556)
T PRK11819 89 ENVEEGVAEVKAA------LDRFNEIYAAYA-EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAK 160 (556)
T ss_pred HHHHHhhHHHHHH------HHHHHHHHHHhc-cCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCc
Confidence 999886321 000 000000000000 010011 01111111101 112335678899999964 5666
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
++ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|+|++.| ...++.++||+|
T Consensus 161 ~~-----~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tviiisH-d~~~~~~~~d~i 230 (556)
T PRK11819 161 VT-----KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVVAVTH-DRYFLDNVAGWI 230 (556)
T ss_pred hh-----hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEEEEeC-CHHHHHhhcCeE
Confidence 65 49999999999999999999999999999999999999999999986 247777655 456788899999
Q ss_pred EEEcCCeEE-EecChhhHH
Q 003389 415 ILLSEGQIV-YQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv-~~G~~~~~~ 432 (824)
++|++|+++ +.|+.++..
T Consensus 231 ~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 231 LELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred EEEeCCEEEEecCCHHHHH
Confidence 999999986 889877653
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=325.30 Aligned_cols=192 Identities=19% Similarity=0.192 Sum_probs=150.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|+++++|+.++|+||||||||||+++|+|+++|+ +|+|.+||.++.+... ++.++||+|++.++..
T Consensus 355 ~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~- 430 (555)
T TIGR01194 355 GFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD- 430 (555)
T ss_pred CceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-
Confidence 35999999999999999999999999999999999999997 9999999999876542 4679999998776654
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccc-cCcc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV-GDEM 339 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v-g~~~ 339 (824)
|+++|+. ++.+.++ +.++++.+++.+..+... |-+.
T Consensus 431 ti~~n~~----------------------------~~~~~~~---------------~~~~~~~~~l~~~~~~lp~g~~t 467 (555)
T TIGR01194 431 LIGPDEG----------------------------EHASLDN---------------AQQYLQRLEIADKVKIEDGGFST 467 (555)
T ss_pred hhhcccc----------------------------cchhHHH---------------HHHHHHHcCCchhhcccccccCC
Confidence 8888741 0000111 223455555543322221 1111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHH-HHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLK-QMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~-~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
...||||||||++|||+|+.+|++|+|||||++||+.++..|.+.+. .+.. .++|+|++.|++ ++.+.||+|++|+
T Consensus 468 ~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~-~~~tiiiisH~~--~~~~~~d~i~~l~ 544 (555)
T TIGR01194 468 TTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR-QGKTIIIISHDD--QYFELADQIIKLA 544 (555)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccH--HHHHhCCEEEEEE
Confidence 24699999999999999999999999999999999999999998765 4433 478999988876 4678999999999
Q ss_pred CCeEEEe
Q 003389 419 EGQIVYQ 425 (824)
Q Consensus 419 ~G~iv~~ 425 (824)
+|+++..
T Consensus 545 ~G~i~~~ 551 (555)
T TIGR01194 545 AGCIVKD 551 (555)
T ss_pred CCEEEEe
Confidence 9999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=332.24 Aligned_cols=204 Identities=24% Similarity=0.361 Sum_probs=173.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-------CceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++|++|+..+
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l 97 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT---SGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHL 97 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCccc
Confidence 46999999999999999999999999999999999999987 9999999998765321 3579999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++.+|+.||+.+.....+.. .. +....+.++++.+||++..|+.++
T Consensus 98 ~~~~tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~lgl~~~~~~~~~ 143 (648)
T PRK10535 98 LSHLTAAQNVEVPAVYAGLE----------RK------------------------QRLLRAQELLQRLGLEDRVEYQPS 143 (648)
T ss_pred CCCCCHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCChhhhcCCcc
Confidence 99999999998754322210 00 011234668899999888887766
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
.||||||||+.|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|++++.|++. ..+.||++++
T Consensus 144 -----~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~~--~~~~~d~i~~ 215 (648)
T PRK10535 144 -----QLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQ--VAAQAERVIE 215 (648)
T ss_pred -----cCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCHH--HHHhCCEEEE
Confidence 4999999999999999999999999999999999999999999999875 4889999887764 3467999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|+++++|+.++..
T Consensus 216 l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 216 IRDGEIVRNPPAQEKV 231 (648)
T ss_pred EECCEEEeecCccccc
Confidence 9999999999998764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=322.62 Aligned_cols=221 Identities=22% Similarity=0.268 Sum_probs=164.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.+++. ..++||+|++.+++.+||+
T Consensus 18 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv~ 86 (552)
T TIGR03719 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---NGEARPAPG--------IKVGYLPQEPQLDPTKTVR 86 (552)
T ss_pred CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC--------CEEEEEeccCCCCCCCcHH
Confidence 46999999999999999999999999999999999999887 999999752 4699999999889999999
Q ss_pred HHHHHhhhh-cCCchhhHHHHHhHHHHHhcCCCCChh-------HHHHHHHHHHhcc-chhhhHHHHHHHcCCCcccccc
Q 003389 264 ETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPE-------IDAFMKAVAVAGQ-ETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 264 E~L~f~a~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~-------~~~~~~~~~~~~~-~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
||+.++... .+. ............ .++.+ ..++.+.+...+. +....++++++.+|++. .++.
T Consensus 87 e~i~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~ 158 (552)
T TIGR03719 87 ENVEEGVAEIKDA------LDRFNEISAKFA-EPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDAD 158 (552)
T ss_pred HHHHHhhHHHHHH------HHHHHHHHHHhc-cCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCc
Confidence 999886321 000 000000000000 00000 0111111111111 11234677889999964 5666
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
++ .|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|+|++.| ....+..+||++
T Consensus 159 ~~-----~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisH-d~~~~~~~~d~v 228 (552)
T TIGR03719 159 VT-----KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTH-DRYFLDNVAGWI 228 (552)
T ss_pred hh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeC-CHHHHHhhcCeE
Confidence 55 49999999999999999999999999999999999999999999875 347777655 556788899999
Q ss_pred EEEcCCeEE-EecChhhHHH
Q 003389 415 ILLSEGQIV-YQGPRDNVLE 433 (824)
Q Consensus 415 ilL~~G~iv-~~G~~~~~~~ 433 (824)
++|++|+++ +.|+.+++.+
T Consensus 229 ~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 229 LELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred EEEECCEEEEecCCHHHHHH
Confidence 999999976 7898876543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=322.35 Aligned_cols=217 Identities=21% Similarity=0.323 Sum_probs=167.1
Q ss_pred hhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----Cce
Q 003389 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRT 246 (824)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~ 246 (824)
+++.++... .+.+|+|||+.|++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++..... ++.
T Consensus 251 i~~~~l~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 251 LEVRNLTSL---RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS---AGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEeCcccc---cCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC---ccEEEECCEECCCCCHHHHHHCC
Confidence 444555433 235999999999999999999999999999999999999887 9999999988754322 345
Q ss_pred EEEEecCC---CCCCCCCHHHHHHHhh-hhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHH
Q 003389 247 CAYISQHD---LHHGEMTVRETLDFSG-RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 322 (824)
Q Consensus 247 i~yv~Q~d---~~~~~lTV~E~L~f~a-~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL 322 (824)
++|++|+. .+++++|+.+|..+.. ...... .++.+.. .....++.++
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~--------------~~~~~~~~~l 375 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNK---------------VGLLDNS--------------RMKSDTQWVI 375 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhccc---------------ccccCcH--------------HHHHHHHHHH
Confidence 89999985 3678889887743321 000000 0000000 0011345678
Q ss_pred HHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEc
Q 003389 323 KILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401 (824)
Q Consensus 323 ~~lgL~-~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~ 401 (824)
+.+++. ...++.+++ |||||||||+||++++.+|++|||||||+|||+.++..+++.|+++.+ .+.|+|+++|
T Consensus 376 ~~~~l~~~~~~~~~~~-----LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~vsH 449 (491)
T PRK10982 376 DSMRVKTPGHRTQIGS-----LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIISS 449 (491)
T ss_pred HhcCccCCCccccccc-----CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEECC
Confidence 889995 456777664 999999999999999999999999999999999999999999999976 4889888765
Q ss_pred cCchhHHhhcCeEEEEcCCeEEEecChh
Q 003389 402 QPAPETYDLFDDIILLSEGQIVYQGPRD 429 (824)
Q Consensus 402 q~~~e~~~lfD~iilL~~G~iv~~G~~~ 429 (824)
+ .+++.++||++++|++|+++..++.+
T Consensus 450 d-~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 450 E-MPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred C-hHHHHhhCCEEEEEECCEEEEEEccc
Confidence 5 45788999999999999999777553
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=323.69 Aligned_cols=220 Identities=19% Similarity=0.260 Sum_probs=164.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|. +.++|++|++.+++.+||+
T Consensus 14 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~--------~~i~~~~q~~~~~~~~tv~ 82 (530)
T PRK15064 14 KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN--------ERLGKLRQDQFAFEEFTVL 82 (530)
T ss_pred cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC--------CEEEEEeccCCcCCCCcHH
Confidence 46999999999999999999999999999999999999887 999999873 3589999998888999999
Q ss_pred HHHHHhhh-hcCCchhhHHHHHhHHHHHhcC---CCCC--hhHHHHHH-HHHHhccchhhhHHHHHHHcCCCccc-cccc
Q 003389 264 ETLDFSGR-CLGVGTRYELLAELSRREKQAG---IKPD--PEIDAFMK-AVAVAGQETSLVTDYVLKILGLDICA-DTMV 335 (824)
Q Consensus 264 E~L~f~a~-~~~~~~~~~~~~~~~~~e~~~~---i~~~--~~~~~~~~-~~~~~~~~~~~~~~~iL~~lgL~~~~-dt~v 335 (824)
|++.++.. ... ... ..+.... .... ....+... .....+.+....++.+|+.+||++.. +..+
T Consensus 83 e~l~~~~~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 153 (530)
T PRK15064 83 DTVIMGHTELWE------VKQ---ERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLM 153 (530)
T ss_pred HHHHHhhHHHHH------HHH---HHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCch
Confidence 99987531 000 000 0000000 0000 00000000 00011112223567889999997543 3444
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
+ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|++ .+.|||++.|+ ...+.++||+|+
T Consensus 154 ~-----~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd-~~~~~~~~d~i~ 223 (530)
T PRK15064 154 S-----EVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHD-RHFLNSVCTHMA 223 (530)
T ss_pred h-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCC-HHHHHhhcceEE
Confidence 4 5999999999999999999999999999999999999999999874 36788887654 557888999999
Q ss_pred EEcCCeE-EEecChhhHHH
Q 003389 416 LLSEGQI-VYQGPRDNVLE 433 (824)
Q Consensus 416 lL~~G~i-v~~G~~~~~~~ 433 (824)
+|++|++ ++.|+.++..+
T Consensus 224 ~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 9999999 58999887653
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=275.10 Aligned_cols=146 Identities=29% Similarity=0.425 Sum_probs=125.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+++|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++
T Consensus 13 ~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~~~i~~~~-------- 81 (163)
T cd03216 13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPRDARRAGIAMVY-------- 81 (163)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHHHHHhcCeEEEE--------
Confidence 46999999999999999999999999999999999999987 9999999987643210 01111111
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
T Consensus 82 -------------------------------------------------------------------------------- 81 (163)
T cd03216 82 -------------------------------------------------------------------------------- 81 (163)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++++ .+.|+|++.|++ .++.+.||++++|++
T Consensus 82 --qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~-~~~~~~~d~~~~l~~ 157 (163)
T cd03216 82 --QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHRL-DEVFEIADRVTVLRD 157 (163)
T ss_pred --ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 1999999999999999999999999999999999999999999999975 478888876654 467788999999999
Q ss_pred CeEEE
Q 003389 420 GQIVY 424 (824)
Q Consensus 420 G~iv~ 424 (824)
|++++
T Consensus 158 g~i~~ 162 (163)
T cd03216 158 GRVVG 162 (163)
T ss_pred CEEEe
Confidence 99875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=351.28 Aligned_cols=247 Identities=22% Similarity=0.265 Sum_probs=184.0
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
..+....++|+.+.++.+++. .+. ..........+.++|+++..+.
T Consensus 581 ~~~a~~s~~Ri~~~L~~~~~~-----~~~--~~~~~~~~~~I~~~~vsF~y~~--------------------------- 626 (1495)
T PLN03232 581 VVNANVSLQRIEELLLSEERI-----LAQ--NPPLQPGAPAISIKNGYFSWDS--------------------------- 626 (1495)
T ss_pred HHHHHHHHHHHHHHHcCcccc-----ccc--cCCcCCCCCcEEEEeeEEEcCC---------------------------
Confidence 455677788888877654431 000 0001111235778888775421
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLH 256 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~ 256 (824)
..++++|+|+|++|++|+.++|+||+|||||||+++|.|.++|. +|.+. ..++.++||+|++.+
T Consensus 627 ----~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~G~i~---------~~~~~Iayv~Q~p~L 690 (1495)
T PLN03232 627 ----KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA---ETSSV---------VIRGSVAYVPQVSWI 690 (1495)
T ss_pred ----CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc---CCCEE---------EecCcEEEEcCcccc
Confidence 11246899999999999999999999999999999999999986 77653 125679999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
+. .||+|||.|+... .+.++++.+++++ .+. +.-.|++..+|.||
T Consensus 691 f~-gTIreNI~fg~~~-----------------------~~e~~~~vl~~~~---L~~--------di~~Lp~Gd~T~IG 735 (1495)
T PLN03232 691 FN-ATVRENILFGSDF-----------------------ESERYWRAIDVTA---LQH--------DLDLLPGRDLTEIG 735 (1495)
T ss_pred cc-ccHHHHhhcCCcc-----------------------CHHHHHHHHHHhC---CHH--------HHHhCCCCCCceec
Confidence 86 4999999997311 0111223333322 111 12457888999999
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF-LKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~-L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
+. +..||||||||++||||++.+|++++||||||+||+.++.+|++. ++... .++|+|++.|++. ....||+|+
T Consensus 736 e~-G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~--~l~~aD~Ii 810 (1495)
T PLN03232 736 ER-GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLH--FLPLMDRII 810 (1495)
T ss_pred CC-CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChh--hHHhCCEEE
Confidence 75 456999999999999999999999999999999999999999765 55543 4789999988864 578899999
Q ss_pred EEcCCeEEEecChhhHHH
Q 003389 416 LLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~~ 433 (824)
+|++|+++++|+++++.+
T Consensus 811 ~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 811 LVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred EEeCCEEEEecCHHHHHh
Confidence 999999999999998863
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=323.75 Aligned_cols=201 Identities=22% Similarity=0.324 Sum_probs=163.3
Q ss_pred hhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEE
Q 003389 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250 (824)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv 250 (824)
+++.++...+. ++.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|. +.++|+
T Consensus 320 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~--------~~i~~~ 387 (530)
T PRK15064 320 LEVENLTKGFD-NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSEN--------ANIGYY 387 (530)
T ss_pred EEEEeeEEeeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc--------eEEEEE
Confidence 44555544443 356999999999999999999999999999999999999887 999999873 469999
Q ss_pred ecCCC--CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC
Q 003389 251 SQHDL--HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD 328 (824)
Q Consensus 251 ~Q~d~--~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~ 328 (824)
+|+.. +++.+||+|++.+... .. .....++.+|+.+|+.
T Consensus 388 ~q~~~~~~~~~~t~~~~~~~~~~---~~------------------------------------~~~~~~~~~l~~~~l~ 428 (530)
T PRK15064 388 AQDHAYDFENDLTLFDWMSQWRQ---EG------------------------------------DDEQAVRGTLGRLLFS 428 (530)
T ss_pred cccccccCCCCCcHHHHHHHhcc---CC------------------------------------ccHHHHHHHHHHcCCC
Confidence 99863 4567999999864210 00 0011245688899994
Q ss_pred -ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhH
Q 003389 329 -ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (824)
Q Consensus 329 -~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~ 407 (824)
+..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++ +.|+|+++|+ ..++
T Consensus 429 ~~~~~~~~~~-----LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd-~~~~ 498 (530)
T PRK15064 429 QDDIKKSVKV-----LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHD-REFV 498 (530)
T ss_pred hhHhcCcccc-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCC-HHHH
Confidence 566777664 9999999999999999999999999999999999999999999886 3588887655 4578
Q ss_pred HhhcCeEEEEcCCeEE-EecChhhHH
Q 003389 408 YDLFDDIILLSEGQIV-YQGPRDNVL 432 (824)
Q Consensus 408 ~~lfD~iilL~~G~iv-~~G~~~~~~ 432 (824)
.++||++++|++|+++ +.|+.+++.
T Consensus 499 ~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 499 SSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred HHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 8899999999999998 888877653
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=288.64 Aligned_cols=216 Identities=26% Similarity=0.345 Sum_probs=174.0
Q ss_pred cCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEe-cCC
Q 003389 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYIS-QHD 254 (824)
Q Consensus 178 ~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~-Q~d 254 (824)
+.++....+.+||||+|++|++++++|||||||||+||+|+|++.|+ +|+|.+||++.-... .-+.+++|+ |.-
T Consensus 31 ~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~---~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ 107 (325)
T COG4586 31 HRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNGKDPFRRREEYLRSIGLVMGQKL 107 (325)
T ss_pred CchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC---CCeEEecCcCcchhHHHHHHHHHHHhhhhh
Confidence 33444566999999999999999999999999999999999999997 999999998643210 014566654 444
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
.+.-++.+.|++......+.++ +. +-..+.+.+.++|+|+...+.+
T Consensus 108 ql~Wdlp~~ds~~v~~~Iy~Ip--------------------d~--------------~F~~r~~~l~eiLdl~~~lk~~ 153 (325)
T COG4586 108 QLWWDLPALDSLEVLKLIYEIP--------------------DD--------------EFAERLDFLTEILDLEGFLKWP 153 (325)
T ss_pred eeeeechhhhhHHHHHHHHhCC--------------------HH--------------HHHHHHHHHHHHhcchhhhhhh
Confidence 4555556777776543333221 11 1123456788899998887766
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
| |.||-|||.|+.+|.+|+.+|+||||||||=|||..++..|.+.|++..++.+.||+.++| ....+..+||||
T Consensus 154 v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH-~~~di~~lc~rv 227 (325)
T COG4586 154 V-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTH-IFDDIATLCDRV 227 (325)
T ss_pred h-----hhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEec-chhhHHHhhhhe
Confidence 5 4699999999999999999999999999999999999999999999999988999999865 566899999999
Q ss_pred EEEcCCeEEEecChhhHHHHHH
Q 003389 415 ILLSEGQIVYQGPRDNVLEFFE 436 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~~~f~ 436 (824)
++++.|+++|.|+.+++.+-|.
T Consensus 228 ~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 228 LLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred EEeeCCcEeecccHHHHHHHhC
Confidence 9999999999999999877553
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=276.53 Aligned_cols=220 Identities=24% Similarity=0.319 Sum_probs=182.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCC----ceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~----~~i~yv~Q~d~~~~~ 259 (824)
+.||++||++|++||+.+||||||||||||.++|+|.-.. ..++|+|.++|+++.+..+. .-+..-+|.|.-+|.
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y-~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~G 95 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY-EVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPG 95 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc-eEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCC
Confidence 4799999999999999999999999999999999998533 24599999999999877652 457788999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc-cccccccCc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGDE 338 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~ 338 (824)
.|+.+.|..+...+... ..+ ..+ ....+++.++.++++. .+++.|..
T Consensus 96 V~~~~fLr~a~n~~~~~---------------~~~-----~~~-----------~~~~~~e~~~~l~~~~~~l~R~vN~- 143 (251)
T COG0396 96 VTNSDFLRAAMNARRGA---------------RGI-----LPE-----------FIKELKEKAELLGLDEEFLERYVNE- 143 (251)
T ss_pred eeHHHHHHHHHHhhhcc---------------ccc-----cHH-----------HHHHHHHHHHHcCCCHHHhhcccCC-
Confidence 99999998765432110 000 011 1123566788999986 67777764
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc--CeEEE
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF--DDIIL 416 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf--D~iil 416 (824)
|+|||||||..|+.+++.+|++.+||||-||||..+-..|.+.+.++.. .+.++++++|.. .+.++. |++.|
T Consensus 144 ---GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~-~~~~~liITHy~--rll~~i~pD~vhv 217 (251)
T COG0396 144 ---GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE-EGRGVLIITHYQ--RLLDYIKPDKVHV 217 (251)
T ss_pred ---CcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc-CCCeEEEEecHH--HHHhhcCCCEEEE
Confidence 8999999999999999999999999999999999999999999999986 477888877754 566766 99999
Q ss_pred EcCCeEEEecChhhHHHHHHHcCCCCC
Q 003389 417 LSEGQIVYQGPRDNVLEFFEHMGFKCP 443 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~~~f~~~G~~~p 443 (824)
|.+|+||..|.+ ++.++++..||.|-
T Consensus 218 l~~GrIv~sG~~-el~~~le~~gy~~~ 243 (251)
T COG0396 218 LYDGRIVKSGDP-ELAEELEEKGYDWL 243 (251)
T ss_pred EECCEEEecCCH-HHHHHHHHhchHHh
Confidence 999999999999 89999999999763
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=348.90 Aligned_cols=197 Identities=25% Similarity=0.334 Sum_probs=161.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCc-ceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRAS-GKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~s-G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
+++|+|+|++|++|++++|+||+|||||||+++|.|.+++. + |+|.+ ++.++||+|++.++. .||
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~GG~I~l----------~~~Iayv~Q~p~Lfn-gTI 695 (1622)
T PLN03130 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR---SDASVVI----------RGTVAYVPQVSWIFN-ATV 695 (1622)
T ss_pred CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccC---CCceEEE----------cCeEEEEcCccccCC-CCH
Confidence 45899999999999999999999999999999999999986 8 89975 346999999988876 599
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
||||.|+... .+.++++..+++++ +. +.-.|++..+|.||+. +..
T Consensus 696 reNI~fg~~~-----------------------d~e~y~~vl~a~~L---~~--------di~~LP~Gd~T~IGe~-G~~ 740 (1622)
T PLN03130 696 RDNILFGSPF-----------------------DPERYERAIDVTAL---QH--------DLDLLPGGDLTEIGER-GVN 740 (1622)
T ss_pred HHHHhCCCcc-----------------------cHHHHHHHHHHhCc---HH--------HHHhCCCcccccccCC-CCC
Confidence 9999997321 01112223333221 11 1335788899999975 456
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQIC-KFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~-~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+||||+..+|++++||||||+||+.++.+|. ++++... .++|+|+++|++ +....||+|++|++|+
T Consensus 741 LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l--~~l~~aD~Ii~L~~G~ 816 (1622)
T PLN03130 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQL--HFLSQVDRIILVHEGM 816 (1622)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCH--hHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999886 4566554 478999998886 4678899999999999
Q ss_pred EEEecChhhHHH
Q 003389 422 IVYQGPRDNVLE 433 (824)
Q Consensus 422 iv~~G~~~~~~~ 433 (824)
++++|+++++.+
T Consensus 817 i~e~Gt~~eL~~ 828 (1622)
T PLN03130 817 IKEEGTYEELSN 828 (1622)
T ss_pred EEEeCCHHHHHh
Confidence 999999998853
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=303.46 Aligned_cols=212 Identities=26% Similarity=0.297 Sum_probs=178.3
Q ss_pred cccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCC----ceEEE
Q 003389 174 LHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCAY 249 (824)
Q Consensus 174 ~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~----~~i~y 249 (824)
.++.+.+. ...+++|||++|++||+.||+|.||||||||+++|.|.++|+ +|+|.++|+++.-..|. --||+
T Consensus 8 ~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGM 83 (501)
T COG3845 8 RGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGM 83 (501)
T ss_pred eccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcE
Confidence 34433333 677999999999999999999999999999999999999998 99999999998654443 45899
Q ss_pred EecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc
Q 003389 250 ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (824)
Q Consensus 250 v~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (824)
|+||..+++++||.||+..+..-.... .+.+++ ....++++.+..||+-
T Consensus 84 VhQHF~Lv~~lTV~ENiiLg~e~~~~~-------~~~~~~------------------------~~~~i~~l~~~yGl~v 132 (501)
T COG3845 84 VHQHFMLVPTLTVAENIILGLEPSKGG-------LIDRRQ------------------------ARARIKELSERYGLPV 132 (501)
T ss_pred EeeccccccccchhhhhhhcCcccccc-------ccCHHH------------------------HHHHHHHHHHHhCCCC
Confidence 999999999999999999875421100 000000 1124567888999999
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh
Q 003389 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (824)
Q Consensus 330 ~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~ 409 (824)
-.|.+|++ ||-||||||.|-++|..+|++|+|||||+-|-|....++++.|+++++ .|+|||+++ |-..|+.+
T Consensus 133 dp~~~V~d-----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~IT-HKL~Ev~~ 205 (501)
T COG3845 133 DPDAKVAD-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFIT-HKLKEVMA 205 (501)
T ss_pred Cccceeec-----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-ccHHHHHH
Confidence 99999987 999999999999999999999999999999999999999999999987 589998865 56779999
Q ss_pred hcCeEEEEcCCeEEEecC
Q 003389 410 LFDDIILLSEGQIVYQGP 427 (824)
Q Consensus 410 lfD~iilL~~G~iv~~G~ 427 (824)
+|||+.||..|+++-..+
T Consensus 206 iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 206 IADRVTVLRRGKVVGTVD 223 (501)
T ss_pred hhCeeEEEeCCeEEeeec
Confidence 999999999999875544
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=319.01 Aligned_cols=218 Identities=22% Similarity=0.245 Sum_probs=163.1
Q ss_pred HhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC----CCCc
Q 003389 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF----VPQR 245 (824)
Q Consensus 170 ~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~----~~~~ 245 (824)
++++.++...+. ++.+|+|+|++|++|++++|+||||||||||+++|+|..++. .+|+|+++|+++... ..++
T Consensus 260 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYN-DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEEC-CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEEecccCCCCCCHHHHHh
Confidence 455556654443 356999999999999999999999999999999999986541 289999999875321 1235
Q ss_pred eEEEEecCCCCCC--CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHH
Q 003389 246 TCAYISQHDLHHG--EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 323 (824)
Q Consensus 246 ~i~yv~Q~d~~~~--~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~ 323 (824)
.++|++|++.++. ..|+++++.++.. ...+.. . ....+ ....++++++
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~-----------~~~~~--------------~~~~~~~~l~ 386 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFF-DSIGIY----Q-----------AVSDR--------------QQKLAQQWLD 386 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccc-cccccc----c-----------CCCHH--------------HHHHHHHHHH
Confidence 6999999865543 3577777654321 000000 0 00000 0123567899
Q ss_pred HcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEcc
Q 003389 324 ILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (824)
Q Consensus 324 ~lgL~~-~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q 402 (824)
.+||.+ ..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|+++|+
T Consensus 387 ~~~l~~~~~~~~~~~-----LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd 461 (490)
T PRK10938 387 ILGIDKRTADAPFHS-----LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHH 461 (490)
T ss_pred HcCCchhhccCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 999987 77877764 999999999999999999999999999999999999999999999987533467776655
Q ss_pred CchhHHh-hcCeEEEEcCCeEEEec
Q 003389 403 PAPETYD-LFDDIILLSEGQIVYQG 426 (824)
Q Consensus 403 ~~~e~~~-lfD~iilL~~G~iv~~G 426 (824)
..++.+ +||++++|++|++++.-
T Consensus 462 -~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 462 -AEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred -hhhhhhhhheeEEEecCCceEEee
Confidence 456666 59999999999988653
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=323.29 Aligned_cols=197 Identities=24% Similarity=0.277 Sum_probs=162.3
Q ss_pred hhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEE
Q 003389 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250 (824)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv 250 (824)
++..++...+. + ..|+++|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++ ..++|+
T Consensus 341 l~~~~ls~~~~-~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~----------~~i~y~ 405 (590)
T PRK13409 341 VEYPDLTKKLG-D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPE----------LKISYK 405 (590)
T ss_pred EEEcceEEEEC-C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEe----------eeEEEe
Confidence 44444443332 2 2589999999999999999999999999999999999987 9999986 148999
Q ss_pred ecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcc
Q 003389 251 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC 330 (824)
Q Consensus 251 ~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~ 330 (824)
+|+..+.+.+||+|++.+...... ....++++|+.+||.+.
T Consensus 406 ~Q~~~~~~~~tv~e~l~~~~~~~~---------------------------------------~~~~~~~~L~~l~l~~~ 446 (590)
T PRK13409 406 PQYIKPDYDGTVEDLLRSITDDLG---------------------------------------SSYYKSEIIKPLQLERL 446 (590)
T ss_pred cccccCCCCCcHHHHHHHHhhhcC---------------------------------------hHHHHHHHHHHCCCHHH
Confidence 999888889999999986421000 00123568899999988
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh
Q 003389 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (824)
Q Consensus 331 ~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l 410 (824)
.|+.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.|+ ..++..+
T Consensus 447 ~~~~~~~-----LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD-~~~~~~~ 520 (590)
T PRK13409 447 LDKNVKD-----LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHD-IYMIDYI 520 (590)
T ss_pred HhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHh
Confidence 8877765 999999999999999999999999999999999999999999999987667888887665 5578889
Q ss_pred cCeEEEEcCCeEEEecCh
Q 003389 411 FDDIILLSEGQIVYQGPR 428 (824)
Q Consensus 411 fD~iilL~~G~iv~~G~~ 428 (824)
||++++|+ |++..+|..
T Consensus 521 aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 521 SDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred CCEEEEEc-Ccceeeeec
Confidence 99999996 588777663
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-32 Score=270.42 Aligned_cols=213 Identities=26% Similarity=0.388 Sum_probs=178.6
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCC-cccCCCCC----CceEEEEecCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG-HELNEFVP----QRTCAYISQHDLHH 257 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG-~~~~~~~~----~~~i~yv~Q~d~~~ 257 (824)
+..+|+|+||+|.|||+-+|+|||||||||+|++|+|+.+|. +|+|.++| .++..... +.-||--+|.+..|
T Consensus 17 GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~---~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVf 93 (249)
T COG4674 17 GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVF 93 (249)
T ss_pred ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC---cceEEEcCchhhccCCHHHHHHhccCccccCCeeh
Confidence 356999999999999999999999999999999999999997 99999999 77765432 34588899999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
..+||+|||+.+.+.... .+..+..+. ..+...+++++|...||.+.+|...+.
T Consensus 94 e~ltV~eNLelA~~~~k~-----v~a~L~~r~---------------------~~~e~~ride~La~igL~~~~~~~A~~ 147 (249)
T COG4674 94 ENLTVRENLELALNRDKS-----VFASLFARL---------------------RAEERRRIDELLATIGLGDERDRLAAL 147 (249)
T ss_pred hhccHHHHHHHHhcCCcc-----hHHHhhhhc---------------------ChhHHHHHHHHHHHcccchhhhhhhhh
Confidence 999999999998543211 112221111 111234688999999999999988775
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
||-||||++.||..++.+|++|++|||++|+--..+.+.-++|++++. ..+++ ++.|+..-+.+++|+|-||
T Consensus 148 -----LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsil-VVEHDM~Fvr~~A~~VTVl 219 (249)
T COG4674 148 -----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSIL-VVEHDMGFVREIADKVTVL 219 (249)
T ss_pred -----hccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEE-EEeccHHHHHHhhheeEEE
Confidence 999999999999999999999999999999999999999999999985 34444 4578888899999999999
Q ss_pred cCCeEEEecChhhHH
Q 003389 418 SEGQIVYQGPRDNVL 432 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (824)
++|++...|+.+++.
T Consensus 220 h~G~VL~EGsld~v~ 234 (249)
T COG4674 220 HEGSVLAEGSLDEVQ 234 (249)
T ss_pred eccceeecccHHHhh
Confidence 999999999998874
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-32 Score=289.35 Aligned_cols=191 Identities=23% Similarity=0.274 Sum_probs=154.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEe-----------eCCcccCCCCC-----CceE
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT-----------YCGHELNEFVP-----QRTC 247 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~-----------~nG~~~~~~~~-----~~~i 247 (824)
+.+|+|+| .+++|++++|+|||||||||||++|+|+++|+ +|+|. ++|+++..... ...+
T Consensus 14 ~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i 89 (255)
T cd03236 14 SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKV 89 (255)
T ss_pred chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEeeccccchhhhhccCchhhhhhHHhhhcccce
Confidence 35999999 59999999999999999999999999999997 99996 88887653211 1247
Q ss_pred EEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCC
Q 003389 248 AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (824)
Q Consensus 248 ~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL 327 (824)
+|++|+...++. ++.+++.+.... .+ ....+.++++.+||
T Consensus 90 ~~~~~~~~~~~~-~~~~~i~~~l~~---------------~~------------------------~~~~~~~~l~~~gl 129 (255)
T cd03236 90 IVKPQYVDLIPK-AVKGKVGELLKK---------------KD------------------------ERGKLDELVDQLEL 129 (255)
T ss_pred eeecchhccCch-HHHHHHHHHhch---------------hH------------------------HHHHHHHHHHHcCC
Confidence 899998777774 888888653210 00 01124568889999
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhH
Q 003389 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (824)
Q Consensus 328 ~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~ 407 (824)
++..+..++ .||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++ .++|+|++.|+ ..++
T Consensus 130 ~~~~~~~~~-----~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd-~~~~ 202 (255)
T cd03236 130 RHVLDRNID-----QLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHD-LAVL 202 (255)
T ss_pred chhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECC-HHHH
Confidence 877776655 5999999999999999999999999999999999999999999999976 47888887655 4577
Q ss_pred HhhcCeEEEEcCCeEEEec
Q 003389 408 YDLFDDIILLSEGQIVYQG 426 (824)
Q Consensus 408 ~~lfD~iilL~~G~iv~~G 426 (824)
.++||+|++| +|+++++|
T Consensus 203 ~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 203 DYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred HHhCCEEEEE-CCCCCcce
Confidence 7899999999 46676654
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-32 Score=279.01 Aligned_cols=209 Identities=28% Similarity=0.399 Sum_probs=166.1
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC----CCCCceEEEEecC--CC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----FVPQRTCAYISQH--DL 255 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~----~~~~~~i~yv~Q~--d~ 255 (824)
++++||+|||++|+|||-.+|+|||||||||||++|+|...|. +|.+.+.|+.... +..++.||+|+-. ..
T Consensus 42 ~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---sg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~ 118 (257)
T COG1119 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETIFELRKRIGLVSSELHER 118 (257)
T ss_pred CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---CCceeeeeeeccCCcchHHHHHHhCccCHHHHhh
Confidence 3578999999999999999999999999999999999999886 9999999987643 2346889999743 34
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (824)
+.+..+|+|-+.-+. ....+..+ .+.+. .....+..+|+.+|+.+.+|...
T Consensus 119 ~~~~~~v~dvVlSg~-~~siG~y~----------------~~~~~------------~~~~~a~~lle~~g~~~la~r~~ 169 (257)
T COG1119 119 FRVRETVRDVVLSGF-FASIGIYQ----------------EDLTA------------EDLAAAQWLLELLGAKHLADRPF 169 (257)
T ss_pred cccccccceeeeecc-cccccccc----------------cCCCH------------HHHHHHHHHHHHcchhhhccCch
Confidence 455678888664432 21111100 00010 01123567899999999999888
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
+. ||-||||||-|||||+.+|.+||||||++|||...+..+++.|.+++...+.+.++.+.|+.+|+-..|++++
T Consensus 170 ~~-----LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l 244 (257)
T COG1119 170 GS-----LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL 244 (257)
T ss_pred hh-----cCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEE
Confidence 75 9999999999999999999999999999999999999999999999875444444444556678999999999
Q ss_pred EEcCCeEEEecC
Q 003389 416 LLSEGQIVYQGP 427 (824)
Q Consensus 416 lL~~G~iv~~G~ 427 (824)
+|++|+++++|-
T Consensus 245 ll~~g~v~~~g~ 256 (257)
T COG1119 245 LLKEGEVVAQGK 256 (257)
T ss_pred EeeCCceeeccc
Confidence 999999999874
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=7e-32 Score=317.54 Aligned_cols=202 Identities=23% Similarity=0.272 Sum_probs=159.7
Q ss_pred hhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEE
Q 003389 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250 (824)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv 250 (824)
+.+.++...+ +++.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.+++. ..+||+
T Consensus 325 l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~--------~~i~~v 392 (556)
T PRK11819 325 IEAENLSKSF-GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKIGET--------VKLAYV 392 (556)
T ss_pred EEEEeEEEEE-CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc--------eEEEEE
Confidence 3444444333 2356999999999999999999999999999999999999987 999999542 159999
Q ss_pred ecCC-CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc
Q 003389 251 SQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (824)
Q Consensus 251 ~Q~d-~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (824)
+|+. .+++.+||+||+.+.....+.. .. ......+++.+||..
T Consensus 393 ~q~~~~~~~~~tv~e~l~~~~~~~~~~-------------------~~-----------------~~~~~~~l~~~~l~~ 436 (556)
T PRK11819 393 DQSRDALDPNKTVWEEISGGLDIIKVG-------------------NR-----------------EIPSRAYVGRFNFKG 436 (556)
T ss_pred eCchhhcCCCCCHHHHHHhhccccccc-------------------cc-----------------HHHHHHHHHhCCCCh
Confidence 9986 6788999999998864321110 00 001234788999964
Q ss_pred -cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHH
Q 003389 330 -CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (824)
Q Consensus 330 -~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~ 408 (824)
..+..++ .|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++. .|+|+++ |+..++.
T Consensus 437 ~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~tvi~vt-Hd~~~~~ 506 (556)
T PRK11819 437 GDQQKKVG-----VLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP----GCAVVIS-HDRWFLD 506 (556)
T ss_pred hHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC----CeEEEEE-CCHHHHH
Confidence 4676666 499999999999999999999999999999999999999999999862 3777655 4556788
Q ss_pred hhcCeEEEEcC-CeEE-EecChhh
Q 003389 409 DLFDDIILLSE-GQIV-YQGPRDN 430 (824)
Q Consensus 409 ~lfD~iilL~~-G~iv-~~G~~~~ 430 (824)
++||+|++|++ |+++ +.|+.++
T Consensus 507 ~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 507 RIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred HhCCEEEEEECCCeEEEecCCHHH
Confidence 89999999986 7876 5676554
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=315.74 Aligned_cols=202 Identities=22% Similarity=0.270 Sum_probs=159.0
Q ss_pred hhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEE
Q 003389 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250 (824)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv 250 (824)
+.+.++...+. ++.+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.+++. ..++|+
T Consensus 323 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~~~--------~~i~~v 390 (552)
T TIGR03719 323 IEAENLSKGFG-DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIKIGET--------VKLAYV 390 (552)
T ss_pred EEEeeEEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEECCc--------eEEEEE
Confidence 34444443332 356999999999999999999999999999999999999887 999999542 259999
Q ss_pred ecCC-CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc
Q 003389 251 SQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (824)
Q Consensus 251 ~Q~d-~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (824)
+|+. .+++.+||.|++.++....+.. .. ......+++.+||..
T Consensus 391 ~q~~~~~~~~~tv~e~l~~~~~~~~~~--------------------~~----------------~~~~~~~l~~~~l~~ 434 (552)
T TIGR03719 391 DQSRDALDPNKTVWEEISGGLDIIQLG--------------------KR----------------EVPSRAYVGRFNFKG 434 (552)
T ss_pred eCCccccCCCCcHHHHHHhhccccccC--------------------cc----------------hHHHHHHHHhCCCCh
Confidence 9986 4788899999998864221110 00 001234788999964
Q ss_pred -cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHH
Q 003389 330 -CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (824)
Q Consensus 330 -~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~ 408 (824)
..++.++ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++. .|+|+++| +...+.
T Consensus 435 ~~~~~~~~-----~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~viivsH-d~~~~~ 504 (552)
T TIGR03719 435 SDQQKKVG-----QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA----GCAVVISH-DRWFLD 504 (552)
T ss_pred hHhcCchh-----hCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC----CeEEEEeC-CHHHHH
Confidence 5676666 499999999999999999999999999999999999999999999872 37777655 456788
Q ss_pred hhcCeEEEEcC-CeEE-EecChhh
Q 003389 409 DLFDDIILLSE-GQIV-YQGPRDN 430 (824)
Q Consensus 409 ~lfD~iilL~~-G~iv-~~G~~~~ 430 (824)
++||++++|++ |+++ +.|+.++
T Consensus 505 ~~~d~i~~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 505 RIATHILAFEGDSHVEWFEGNYSE 528 (552)
T ss_pred HhCCEEEEEECCCeEEEeCCCHHH
Confidence 89999999986 5876 5566543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.6e-32 Score=269.99 Aligned_cols=208 Identities=25% Similarity=0.331 Sum_probs=169.8
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCC---ceEEEEecCC--CC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ---RTCAYISQHD--LH 256 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~---~~i~yv~Q~d--~~ 256 (824)
..+++|+++|++|..|+++-|+|.||||||||+|+|+|.+.|+ +|+|.++|.+++..... ..++-|+|++ ..
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t---~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt 93 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVAKRANLLARVFQDPLAGT 93 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC---CceEEECceecccCCHHHHhhHHHHHhcchhhCC
Confidence 3567999999999999999999999999999999999999997 99999999999876543 3467789996 46
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHH--HcCCCcccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK--ILGLDICADTM 334 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~--~lgL~~~~dt~ 334 (824)
.++|||.||+..+. ++|...-+ ...+..+.+ +.+ .+-++ -+||++..++.
T Consensus 94 ~~~lTieENl~la~-~Rg~~rgl--~~~ln~~~~----------~~f---------------~~~l~~l~lgLenrL~~~ 145 (263)
T COG1101 94 APELTIEENLALAE-SRGKKRGL--SSALNERRR----------SSF---------------RERLARLGLGLENRLSDR 145 (263)
T ss_pred cccccHHHHHHHHH-hcCccccc--chhhhHHHH----------HHH---------------HHHHhhcccchhhhhcCh
Confidence 89999999999864 33321110 010100000 001 11233 35778899999
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
+|- |||||||-|+++.|.+.+|++|||||=|++|||.++..+++.-.++..+.+.|.++++| ......++-+|.
T Consensus 146 igl-----LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTH-nm~~Al~yG~Rl 219 (263)
T COG1101 146 IGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTH-NMEDALDYGNRL 219 (263)
T ss_pred hhh-----ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEec-cHHHHHhhCCeE
Confidence 985 99999999999999999999999999999999999999999999999988899999765 567889999999
Q ss_pred EEEcCCeEEEec
Q 003389 415 ILLSEGQIVYQG 426 (824)
Q Consensus 415 ilL~~G~iv~~G 426 (824)
|+|++|+||.+-
T Consensus 220 ImLh~G~IvlDv 231 (263)
T COG1101 220 IMLHSGKIVLDV 231 (263)
T ss_pred EEEeCCeEEEEc
Confidence 999999999763
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=279.60 Aligned_cols=172 Identities=27% Similarity=0.350 Sum_probs=149.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
..+++||||+|++||.++|+|.||||||||-++|.|+++|+ +|+|.++|+++.... +
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~--------------------~ 82 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLS--------------------K 82 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcc--------------------h
Confidence 57999999999999999999999999999999999999997 999999999876542 0
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc-cccccccCccCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGDEMRRG 342 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~rg 342 (824)
+ + ....+.++|+.+||.. .++ .+++.
T Consensus 83 ~------------------------~------------------------~~~~v~elL~~Vgl~~~~~~-----ryPhe 109 (268)
T COG4608 83 E------------------------E------------------------RRERVLELLEKVGLPEEFLY-----RYPHE 109 (268)
T ss_pred h------------------------H------------------------HHHHHHHHHHHhCCCHHHhh-----cCCcc
Confidence 0 0 0113566888899854 344 34567
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
+|||||||+.|||||+.+|+++++|||+|.||.+.+.+|+++|+++.++.+.|.+.+.| +...+..++|||.+|..|+|
T Consensus 110 lSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsH-DL~vv~~isdri~VMy~G~i 188 (268)
T COG4608 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISH-DLSVVRYISDRIAVMYLGKI 188 (268)
T ss_pred cCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEE-EHHhhhhhcccEEEEecCce
Confidence 99999999999999999999999999999999999999999999999988999988765 56678889999999999999
Q ss_pred EEecChhhHH
Q 003389 423 VYQGPRDNVL 432 (824)
Q Consensus 423 v~~G~~~~~~ 432 (824)
|+.|+.+++.
T Consensus 189 VE~g~~~~~~ 198 (268)
T COG4608 189 VEIGPTEEVF 198 (268)
T ss_pred eEecCHHHHh
Confidence 9999999884
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=312.41 Aligned_cols=183 Identities=14% Similarity=0.236 Sum_probs=145.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+.+|+|+|++|++||.++|+||||||||||+++|+|+++++ +|+|.+++ ++.++||+|++.+++. ||+
T Consensus 465 ~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---~G~i~~~~--------~~~i~~v~Q~~~l~~~-tv~ 532 (659)
T TIGR00954 465 DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY---GGRLTKPA--------KGKLFYVPQRPYMTLG-TLR 532 (659)
T ss_pred CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEeecC--------CCcEEEECCCCCCCCc-CHH
Confidence 46999999999999999999999999999999999999886 89998864 4569999999887776 999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc------cccccC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA------DTMVGD 337 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~------dt~vg~ 337 (824)
||+.++...... . .++... ..+.++++.+||++.. ||..+
T Consensus 533 eni~~~~~~~~~----------~--------~~~~~~---------------~~i~~~l~~~~l~~~~~~~~g~~~~~~- 578 (659)
T TIGR00954 533 DQIIYPDSSEDM----------K--------RRGLSD---------------KDLEQILDNVQLTHILEREGGWSAVQD- 578 (659)
T ss_pred HHHhcCCChhhh----------h--------ccCCCH---------------HHHHHHHHHcCCHHHHhhcCCcccccc-
Confidence 999886422110 0 000000 1234456666665543 33332
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
....||||||||++|||+|+.+|++++|||||+|||+.++..+.+.+++ .++|+|++.|++. ..+.||++++|
T Consensus 579 -~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~--~~~~~d~il~l 651 (659)
T TIGR00954 579 -WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKS--LWKYHEYLLYM 651 (659)
T ss_pred -cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCchH--HHHhCCEEEEE
Confidence 2457999999999999999999999999999999999999999998876 2789999888764 45889999999
Q ss_pred cC
Q 003389 418 SE 419 (824)
Q Consensus 418 ~~ 419 (824)
+.
T Consensus 652 ~~ 653 (659)
T TIGR00954 652 DG 653 (659)
T ss_pred eC
Confidence 63
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=315.39 Aligned_cols=202 Identities=23% Similarity=0.288 Sum_probs=160.9
Q ss_pred HhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEE
Q 003389 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAY 249 (824)
Q Consensus 170 ~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~y 249 (824)
++.+.++...+ +++.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+++. ..+||
T Consensus 312 ~l~~~~l~~~y-~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~--------~~igy 379 (638)
T PRK10636 312 LLKMEKVSAGY-GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---SGEIGLAKG--------IKLGY 379 (638)
T ss_pred eEEEEeeEEEe-CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCC--------EEEEE
Confidence 34555555444 3457999999999999999999999999999999999999887 999999742 25899
Q ss_pred EecCC--CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCC
Q 003389 250 ISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (824)
Q Consensus 250 v~Q~d--~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL 327 (824)
++|+. .+.+..||.+++.-. . +. .....+..+|+.+++
T Consensus 380 ~~Q~~~~~l~~~~~~~~~~~~~---~----------------------~~---------------~~~~~~~~~L~~~~l 419 (638)
T PRK10636 380 FAQHQLEFLRADESPLQHLARL---A----------------------PQ---------------ELEQKLRDYLGGFGF 419 (638)
T ss_pred ecCcchhhCCccchHHHHHHHh---C----------------------ch---------------hhHHHHHHHHHHcCC
Confidence 99974 344556777665210 0 00 001124568899999
Q ss_pred C-ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh
Q 003389 328 D-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (824)
Q Consensus 328 ~-~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e 406 (824)
. ...++.+++ |||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ ++|+|+++| +...
T Consensus 420 ~~~~~~~~~~~-----LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~gtvi~vSH-d~~~ 489 (638)
T PRK10636 420 QGDKVTEETRR-----FSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF----EGALVVVSH-DRHL 489 (638)
T ss_pred ChhHhcCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCeEEEEeC-CHHH
Confidence 6 367777764 9999999999999999999999999999999999999999999986 348777655 5567
Q ss_pred HHhhcCeEEEEcCCeEE-EecChhhHHH
Q 003389 407 TYDLFDDIILLSEGQIV-YQGPRDNVLE 433 (824)
Q Consensus 407 ~~~lfD~iilL~~G~iv-~~G~~~~~~~ 433 (824)
+.++||+|++|++|+++ +.|+.++..+
T Consensus 490 ~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 490 LRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred HHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 88899999999999997 8899887643
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=336.21 Aligned_cols=198 Identities=23% Similarity=0.325 Sum_probs=159.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++| .++||+|++.++ +.||+
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g----------~i~yv~Q~~~l~-~~Ti~ 716 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVHMKG----------SVAYVPQQAWIQ-NDSLR 716 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccC---CcEEEECC----------EEEEEcCCcccc-CCcHH
Confidence 45999999999999999999999999999999999999987 99999987 489999998765 57999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc-CCCccccccccCccCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDEMRRG 342 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-gL~~~~dt~vg~~~~rg 342 (824)
||+.|+.... +.+.++..++++ +.+.+ .+++..+|.+|+. +..
T Consensus 717 eNI~~g~~~~-----------------------~~~~~~~~~~~~------------l~~~l~~~~~g~~t~ig~~-g~~ 760 (1522)
T TIGR00957 717 ENILFGKALN-----------------------EKYYQQVLEACA------------LLPDLEILPSGDRTEIGEK-GVN 760 (1522)
T ss_pred HHhhcCCccC-----------------------HHHHHHHHHHhC------------CHHHHHhcCCCCCceecCC-CCC
Confidence 9999863210 001111222211 11222 2456678899864 567
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHH-HhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV-HILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~-~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
||||||||++||||++.+|++++|||||++||+.++..+.+.+.+.. ...++|+|+++|++. ....||+|++|++|+
T Consensus 761 LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l~~G~ 838 (1522)
T TIGR00957 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVMSGGK 838 (1522)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCCEEEEecCCe
Confidence 99999999999999999999999999999999999999999997532 124789999888764 446699999999999
Q ss_pred EEEecChhhHHH
Q 003389 422 IVYQGPRDNVLE 433 (824)
Q Consensus 422 iv~~G~~~~~~~ 433 (824)
++.+|+++++.+
T Consensus 839 i~~~g~~~~l~~ 850 (1522)
T TIGR00957 839 ISEMGSYQELLQ 850 (1522)
T ss_pred EEeeCCHHHHHh
Confidence 999999988753
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=280.75 Aligned_cols=215 Identities=23% Similarity=0.307 Sum_probs=176.9
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCCCC-------CceEEEEec
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEFVP-------QRTCAYISQ 252 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q 252 (824)
+...++++|||.|++||.+||+|.||||||-..+.+.|+++.. ...+|+|.|+|+++-.... -..|++|+|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 3467999999999999999999999999999999999998752 3458999999998754332 247999999
Q ss_pred CC--CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcc
Q 003389 253 HD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC 330 (824)
Q Consensus 253 ~d--~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~ 330 (824)
++ .+.|-.|+..-+.-..+++.. +++++ ...++-++|+..|+++-
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg---------~~~~~------------------------Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRG---------LSRAA------------------------ARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhc---------ccHHH------------------------HHHHHHHHHHHcCCCch
Confidence 97 456777888777666555321 11111 12245668899999865
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh
Q 003389 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (824)
Q Consensus 331 ~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l 410 (824)
.... +.++.+|||||||||.||.||+++|++|+.||||++||...+.+|+++|+++.++.|..+++++ |+..-+-++
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfIT-HDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFIT-HDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEe-ccHHHHHHh
Confidence 5433 4678889999999999999999999999999999999999999999999999998899888865 556678889
Q ss_pred cCeEEEEcCCeEEEecChhhHH
Q 003389 411 FDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 411 fD~iilL~~G~iv~~G~~~~~~ 432 (824)
+|+|.||.+|++|++|+++++.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHh
Confidence 9999999999999999998874
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=326.20 Aligned_cols=208 Identities=27% Similarity=0.399 Sum_probs=185.9
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC----CCceEEEEecCCCCCCCCC
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~----~~~~i~yv~Q~d~~~~~lT 261 (824)
+++++|+.|++||+.+++|||||||||++|+|.|..+|+ +|+++++|+++.... .++.+||+||+|.+.++||
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t---~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT 656 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPT---SGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELT 656 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCC---cceEEEecCccccccchhhhhhhcccCCchhhhhhhcc
Confidence 999999999999999999999999999999999999997 999999999986422 3577999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
.||+|.+.++++|.... ++ ...++.+++.+||.+++|+.++.
T Consensus 657 ~rEhL~~~arlrG~~~~--------------------di--------------~~~v~~ll~~~~L~~~~~~~~~~---- 698 (885)
T KOG0059|consen 657 GREHLEFYARLRGLPRS--------------------DI--------------GSAIEKLLRLVGLGPYANKQVRT---- 698 (885)
T ss_pred HHHHHHHHHHHcCCChh--------------------HH--------------HHHHHHHHHHcCChhhhccchhh----
Confidence 99999999999986321 11 12467899999999999999875
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
+|||+|||+++|.+|+++|++++|||||+|+||.++..+.+.++++.+. ++.+|++ +|..+|...+|||+.+|.+|+
T Consensus 699 -ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~-g~aiiLT-SHsMeE~EaLCtR~aImv~G~ 775 (885)
T KOG0059|consen 699 -YSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN-GKAIILT-SHSMEEAEALCTRTAIMVIGQ 775 (885)
T ss_pred -CCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEE-cCCHHHHHHHhhhhheeecCe
Confidence 9999999999999999999999999999999999999999999999873 5555554 577899999999999999999
Q ss_pred EEEecChhhHHHHHHH
Q 003389 422 IVYQGPRDNVLEFFEH 437 (824)
Q Consensus 422 iv~~G~~~~~~~~f~~ 437 (824)
+.-.|+++++...|..
T Consensus 776 l~ciGs~q~LKsrfG~ 791 (885)
T KOG0059|consen 776 LRCIGSPQELKSRYGS 791 (885)
T ss_pred eEEecChHHHHhhcCC
Confidence 9999999999877653
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-31 Score=312.80 Aligned_cols=204 Identities=25% Similarity=0.326 Sum_probs=161.7
Q ss_pred HhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEE
Q 003389 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAY 249 (824)
Q Consensus 170 ~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~y 249 (824)
++.+.++...+. ++++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+ |.++ .++|
T Consensus 319 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~-~~~~-------~i~y 386 (635)
T PRK11147 319 VFEMENVNYQID-GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD---SGRIHC-GTKL-------EVAY 386 (635)
T ss_pred eEEEeeeEEEEC-CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEE-CCCc-------EEEE
Confidence 345556554443 457999999999999999999999999999999999999887 999998 5332 5999
Q ss_pred EecCC-CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC
Q 003389 250 ISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD 328 (824)
Q Consensus 250 v~Q~d-~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~ 328 (824)
++|+. .+++.+||.|++.+....... . . ....+..+|+.+++.
T Consensus 387 ~~q~~~~l~~~~tv~e~l~~~~~~~~~---------------------~-~--------------~~~~~~~~l~~~~l~ 430 (635)
T PRK11147 387 FDQHRAELDPEKTVMDNLAEGKQEVMV---------------------N-G--------------RPRHVLGYLQDFLFH 430 (635)
T ss_pred EeCcccccCCCCCHHHHHHhhcccccc---------------------c-c--------------hHHHHHHHHHhcCCC
Confidence 99975 578899999999875310000 0 0 001235578888985
Q ss_pred -ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhH
Q 003389 329 -ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (824)
Q Consensus 329 -~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~ 407 (824)
+..++.++. |||||||||+||++|+.+|++|||||||+|||..+...+.+.|+++ +.|+|+++| +...+
T Consensus 431 ~~~~~~~~~~-----LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSH-d~~~~ 500 (635)
T PRK11147 431 PKRAMTPVKA-----LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSH-DRQFV 500 (635)
T ss_pred HHHHhChhhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEEC-CHHHH
Confidence 456777764 9999999999999999999999999999999999999999999875 457777665 45678
Q ss_pred HhhcCeEEEEc-CCeEE-EecChhhH
Q 003389 408 YDLFDDIILLS-EGQIV-YQGPRDNV 431 (824)
Q Consensus 408 ~~lfD~iilL~-~G~iv-~~G~~~~~ 431 (824)
..+||++++|+ +|+++ |.|+.++.
T Consensus 501 ~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 501 DNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 88999999997 89986 45665543
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-30 Score=261.87 Aligned_cols=206 Identities=24% Similarity=0.279 Sum_probs=174.2
Q ss_pred cccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCC
Q 003389 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGE 259 (824)
Q Consensus 180 ~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~ 259 (824)
+.....+|+||||++++||.++|+|+||||||||||+|+|.++|+ +|+|.++|+-..-+ .-.-.+.|+
T Consensus 36 ~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt---~G~v~v~G~v~~li---------~lg~Gf~pe 103 (249)
T COG1134 36 KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT---SGKVKVTGKVAPLI---------ELGAGFDPE 103 (249)
T ss_pred CcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC---CceEEEcceEehhh---------hcccCCCcc
Confidence 445677999999999999999999999999999999999999998 99999999643211 111245577
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+|.+||+.+-+.+.|.. +.+ .+...+++.+.-+|.+..|.+|.
T Consensus 104 lTGreNi~l~~~~~G~~----------~~e------------------------i~~~~~eIieFaELG~fi~~Pvk--- 146 (249)
T COG1134 104 LTGRENIYLRGLILGLT----------RKE------------------------IDEKVDEIIEFAELGDFIDQPVK--- 146 (249)
T ss_pred cchHHHHHHHHHHhCcc----------HHH------------------------HHHHHHHHHHHHHHHHHhhCchh---
Confidence 89999999988777653 111 12346778888889888888875
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.+|.|++-|++.+.+...+|++|++||..+-.|+.-..+-.+.++++.++ +.|+|++.|+ ...+.++||++++|++
T Consensus 147 --tYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~-~~tiv~VSHd-~~~I~~~Cd~~i~l~~ 222 (249)
T COG1134 147 --TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKTIVLVSHD-LGAIKQYCDRAIWLEH 222 (249)
T ss_pred --hccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEECC-HHHHHHhcCeeEEEeC
Confidence 59999999999999999999999999999999999999999999999764 6788777654 5589999999999999
Q ss_pred CeEEEecChhhHHHHHHHc
Q 003389 420 GQIVYQGPRDNVLEFFEHM 438 (824)
Q Consensus 420 G~iv~~G~~~~~~~~f~~~ 438 (824)
|++.+.|.++++.++|+..
T Consensus 223 G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 223 GQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred CEEEEcCCHHHHHHHHHHh
Confidence 9999999999999988764
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=310.52 Aligned_cols=204 Identities=19% Similarity=0.212 Sum_probs=157.4
Q ss_pred hhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEE
Q 003389 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250 (824)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv 250 (824)
+.+.++...+.+.+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.+++. ..++|+
T Consensus 509 L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~---~G~I~~~~~--------~~igyv 577 (718)
T PLN03073 509 ISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS---SGTVFRSAK--------VRMAVF 577 (718)
T ss_pred EEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CceEEECCc--------eeEEEE
Confidence 455555555433446999999999999999999999999999999999999987 999998752 469999
Q ss_pred ecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc-
Q 003389 251 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI- 329 (824)
Q Consensus 251 ~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~- 329 (824)
+|+. ...+++.++..+...... +.. ....+..+|+.+||.+
T Consensus 578 ~Q~~--~~~l~~~~~~~~~~~~~~---------------------~~~---------------~~~~i~~~L~~~gl~~~ 619 (718)
T PLN03073 578 SQHH--VDGLDLSSNPLLYMMRCF---------------------PGV---------------PEQKLRAHLGSFGVTGN 619 (718)
T ss_pred eccc--cccCCcchhHHHHHHHhc---------------------CCC---------------CHHHHHHHHHHCCCChH
Confidence 9974 344566666432210000 000 0112456888999973
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh
Q 003389 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (824)
Q Consensus 330 ~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~ 409 (824)
..+..++ .|||||||||+||++|+.+|++|||||||+|||+.+...+++.|++. +.|+|+++|+ ...+..
T Consensus 620 ~~~~~~~-----~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~----~gtvIivSHd-~~~i~~ 689 (718)
T PLN03073 620 LALQPMY-----TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF----QGGVLMVSHD-EHLISG 689 (718)
T ss_pred HhcCCcc-----ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCEEEEEECC-HHHHHH
Confidence 5566655 59999999999999999999999999999999999999998888764 2477777654 557888
Q ss_pred hcCeEEEEcCCeEE-EecChhhHHH
Q 003389 410 LFDDIILLSEGQIV-YQGPRDNVLE 433 (824)
Q Consensus 410 lfD~iilL~~G~iv-~~G~~~~~~~ 433 (824)
+||++++|.+|+++ +.|+.++..+
T Consensus 690 ~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 690 SVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred hCCEEEEEECCEEEEeCCCHHHHHH
Confidence 99999999999998 7888766443
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=251.60 Aligned_cols=208 Identities=24% Similarity=0.309 Sum_probs=173.2
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--C-CCceEEEEecCCC--CC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--V-PQRTCAYISQHDL--HH 257 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~-~~~~i~yv~Q~d~--~~ 257 (824)
...+.+.|||+++.|+.+|++|.||||||||.|+|+|..+|+ +|+|.+||+++.-- . ..+.|-+++||+. +-
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT---sG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~N 101 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLN 101 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC---CceEEECCccccccchHhhhhheeeeecCCccccC
Confidence 355899999999999999999999999999999999999997 99999999987532 2 2377999999974 56
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCC-Ccccccccc
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL-DICADTMVG 336 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL-~~~~dt~vg 336 (824)
|.+.+..-|++..++..- +.. ...++++-+.|+..|| ++.++-.
T Consensus 102 PRl~iGqiLd~PL~l~T~---------~~~------------------------~~R~~~i~~TL~~VGL~Pdhan~~-- 146 (267)
T COG4167 102 PRLRIGQILDFPLRLNTD---------LEP------------------------EQRRKQIFETLRMVGLLPDHANYY-- 146 (267)
T ss_pred hhhhhhhHhcchhhhccc---------CCh------------------------HHHHHHHHHHHHHhccCccccccc--
Confidence 788888888776554321 000 1112345567889998 4555544
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+..||-||||||++||||+.+|++++.||...+||.+.+.++++++-++.++.|.+-|.+ .|+..-+..++|+|+|
T Consensus 147 ---~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV-~QhlG~iKHi~D~viV 222 (267)
T COG4167 147 ---PHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYV-TQHIGMIKHISDQVLV 222 (267)
T ss_pred ---hhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEE-echhhHhhhhcccEEE
Confidence 356999999999999999999999999999999999999999999999999888888875 5777788899999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|++|+.|.+.+++
T Consensus 223 M~EG~vvE~G~t~~v~ 238 (267)
T COG4167 223 MHEGEVVERGSTADVL 238 (267)
T ss_pred EecCceeecCChhhhh
Confidence 9999999999999884
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-30 Score=304.44 Aligned_cols=216 Identities=22% Similarity=0.299 Sum_probs=156.6
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
++.+|+||||.|++|++++|+||||||||||||+|+|.++|+ +|+|.++|.. .++|++|+.... ..|+
T Consensus 13 ~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~~~~--------~i~~~~q~~~~~-~~~~ 80 (638)
T PRK10636 13 VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGNW--------QLAWVNQETPAL-PQPA 80 (638)
T ss_pred CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCCC--------EEEEEecCCCCC-CCCH
Confidence 356999999999999999999999999999999999999887 9999998842 489999965433 3577
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHH----HhccchhhhHHHHHHHcCCC-ccccccccC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVA----VAGQETSLVTDYVLKILGLD-ICADTMVGD 337 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~ 337 (824)
.+.+.-.... ...+............ ...+..... ..+.+....++.+|+.+||. +..+..+++
T Consensus 81 ~~~v~~~~~~---------~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 149 (638)
T PRK10636 81 LEYVIDGDRE---------YRQLEAQLHDANERND--GHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSD 149 (638)
T ss_pred HHHHHHhhHH---------HHHHHHHHHHHhccCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhh
Confidence 6655422100 0111110000000000 000000000 01112234577899999997 567777765
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
|||||||||+||++|+.+|++|||||||+|||..+...+.+.|+++ +.|+|++. |+...+.++||+|++|
T Consensus 150 -----LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivs-Hd~~~l~~~~d~i~~L 219 (638)
T PRK10636 150 -----FSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILIS-HDRDFLDPIVDKIIHI 219 (638)
T ss_pred -----cCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEe-CCHHHHHHhcCEEEEE
Confidence 9999999999999999999999999999999999999999999875 45777765 5566788899999999
Q ss_pred cCCeEE-EecChhhH
Q 003389 418 SEGQIV-YQGPRDNV 431 (824)
Q Consensus 418 ~~G~iv-~~G~~~~~ 431 (824)
++|+++ |.|+.+..
T Consensus 220 ~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 220 EQQSLFEYTGNYSSF 234 (638)
T ss_pred eCCEEEEecCCHHHH
Confidence 999996 67776644
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=258.30 Aligned_cols=157 Identities=24% Similarity=0.300 Sum_probs=127.1
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
.+++|+|+|++|++|++++|+|||||||||||++|.+ . +|+|.++|... .. .++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~---~G~v~~~~~~~-~~-~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A---SGKARLISFLP-KF-SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----c---CCcEEECCccc-cc-ccccEEEEhH----------
Confidence 3569999999999999999999999999999999953 2 89999988732 21 2334778776
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc-cccccccCccCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGDEMRR 341 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~r 341 (824)
.| .++.++|.. ..+..+ +
T Consensus 68 ~~--------------------------------------------------------~l~~~~L~~~~~~~~~-----~ 86 (176)
T cd03238 68 LQ--------------------------------------------------------FLIDVGLGYLTLGQKL-----S 86 (176)
T ss_pred HH--------------------------------------------------------HHHHcCCCccccCCCc-----C
Confidence 11 234566653 345444 4
Q ss_pred CCCHHHHHHHHHHHHHHcC--CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 342 GISGGQKKRVTTGEMLVGT--ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~--p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.||||||||++||++|+.+ |++++|||||+|||+.++..+.+.|+++++ .++|+|++.|++. + .+.||++++|.+
T Consensus 87 ~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~~-~-~~~~d~i~~l~~ 163 (176)
T cd03238 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEHNLD-V-LSSADWIIDFGP 163 (176)
T ss_pred cCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-H-HHhCCEEEEECC
Confidence 5999999999999999999 999999999999999999999999999975 5889999887764 4 468999999966
Q ss_pred CeE
Q 003389 420 GQI 422 (824)
Q Consensus 420 G~i 422 (824)
|+.
T Consensus 164 g~~ 166 (176)
T cd03238 164 GSG 166 (176)
T ss_pred CCC
Confidence 443
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=255.44 Aligned_cols=179 Identities=26% Similarity=0.366 Sum_probs=156.7
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGE 259 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~ 259 (824)
....++.++||++.+||++-|.|||||||||||++|+|++.|+ +|+|.++|.+++... .++.+-|+..++.+-++
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~e 89 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTE 89 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchhhHHHHHHHhhccccccch
Confidence 3567999999999999999999999999999999999999998 999999999887643 23668899988999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
|||.|||.|.-+..+.. ....+.+.++.+||....|.+++.
T Consensus 90 LTa~ENL~F~~~~~~~~-------------------------------------~~~~i~~Al~~vgL~g~~dlp~~~-- 130 (209)
T COG4133 90 LTALENLHFWQRFHGSG-------------------------------------NAATIWEALAQVGLAGLEDLPVGQ-- 130 (209)
T ss_pred hhHHHHHHHHHHHhCCC-------------------------------------chhhHHHHHHHcCcccccccchhh--
Confidence 99999999976554321 011245678899999999999985
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e 406 (824)
||-||||||+|||.++.++++-+||||+++||......+-..+..-++ .|..||.++|||.+.
T Consensus 131 ---LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~-~GGiVllttHq~l~~ 193 (209)
T COG4133 131 ---LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAA-QGGIVLLTTHQPLPI 193 (209)
T ss_pred ---cchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhc-CCCEEEEecCCccCC
Confidence 999999999999999999999999999999999999999999998886 588899999999754
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=329.20 Aligned_cols=196 Identities=22% Similarity=0.336 Sum_probs=159.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+++|+|||++|++|++++|+|||||||||||++|+|.++|. +|+|.++| .++||+|++.+++. ||+
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~---~G~i~~~g----------~iayv~Q~~~l~~~-Ti~ 504 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS---EGKIKHSG----------RISFSPQTSWIMPG-TIK 504 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECC----------EEEEEeCCCccCCc-cHH
Confidence 46999999999999999999999999999999999999987 99999988 38999999988874 999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+.|+..... ...++..+++++ +..++. +++..+|.+|+. +..|
T Consensus 505 eNI~~g~~~~~-----------------------~~~~~~~~~~~L---------~~~l~~--l~~g~~t~vg~~-g~~L 549 (1490)
T TIGR01271 505 DNIIFGLSYDE-----------------------YRYTSVIKACQL---------EEDIAL--FPEKDKTVLGEG-GITL 549 (1490)
T ss_pred HHHHhccccch-----------------------HHHHHHHHHHhH---------HHHHHh--ccccccccccCc-CCCc
Confidence 99998742110 011112222211 112222 344567888865 5679
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-FLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~-~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
||||||||+||||++.+|++++|||||+|||+.++.+|.+ +++++. .++|+|+++|++. ....||+|++|++|++
T Consensus 550 SgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~--~~~tvilvtH~~~--~~~~ad~ii~l~~g~i 625 (1490)
T TIGR01271 550 SGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM--SNKTRILVTSKLE--HLKKADKILLLHEGVC 625 (1490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCeEEEEeCChH--HHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999997 467765 3789999988875 3456999999999999
Q ss_pred EEecChhhHH
Q 003389 423 VYQGPRDNVL 432 (824)
Q Consensus 423 v~~G~~~~~~ 432 (824)
+..|+.+++.
T Consensus 626 ~~~g~~~~l~ 635 (1490)
T TIGR01271 626 YFYGTFSELQ 635 (1490)
T ss_pred EEEcCHHHHH
Confidence 9999998875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=252.06 Aligned_cols=132 Identities=31% Similarity=0.442 Sum_probs=118.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
.++|+++|+.+++||+++|+||||||||||+++|+|+++|. +|+|+++|+ +.++|++|
T Consensus 13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~--------~~i~~~~~----------- 70 (144)
T cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGST--------VKIGYFEQ----------- 70 (144)
T ss_pred ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCe--------EEEEEEcc-----------
Confidence 35999999999999999999999999999999999999987 999999984 34566554
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
|
T Consensus 71 -------------------------------------------------------------------------------l 71 (144)
T cd03221 71 -------------------------------------------------------------------------------L 71 (144)
T ss_pred -------------------------------------------------------------------------------C
Confidence 7
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|+||+||++|||+|+.+|++++|||||+|||+.+...+.+.|+++ +.|++++.|+ .+++.++||++++|++|+
T Consensus 72 S~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~-~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHD-RYFLDQVATKIIELEDGK 144 (144)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECC-HHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999999999986 3588887655 457778999999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=258.94 Aligned_cols=147 Identities=25% Similarity=0.311 Sum_probs=126.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
++.+++++ +++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.+ ++|++|+.
T Consensus 12 ~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~---------i~~~~q~~-------- 70 (177)
T cd03222 12 VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGIT---------PVYKPQYI-------- 70 (177)
T ss_pred CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEE---------EEEEcccC--------
Confidence 45688885 899999999999999999999999999999987 9999999853 67776620
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
.
T Consensus 71 -------------------------------------------------------------------------------~ 71 (177)
T cd03222 71 -------------------------------------------------------------------------------D 71 (177)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|+ ..++.++||++++|+++-.
T Consensus 72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~-~~~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD-LAVLDYLSDRIHVFEGEPG 150 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECC-HHHHHHhCCEEEEEcCCCc
Confidence 899999999999999999999999999999999999999999999876434788887665 4577789999999998877
Q ss_pred EEe--cChhh
Q 003389 423 VYQ--GPRDN 430 (824)
Q Consensus 423 v~~--G~~~~ 430 (824)
+++ |++..
T Consensus 151 ~~~~~~~~~~ 160 (177)
T cd03222 151 VYGIASQPKG 160 (177)
T ss_pred cceeccCCcc
Confidence 655 55543
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=302.61 Aligned_cols=221 Identities=26% Similarity=0.315 Sum_probs=155.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+++|+||||.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.. .++|++|++......||.
T Consensus 16 ~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~~~~~--------~~~~l~q~~~~~~~~~v~ 84 (635)
T PRK11147 16 APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQDL--------IVARLQQDPPRNVEGTVY 84 (635)
T ss_pred ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEeCCCC--------EEEEeccCCCCCCCCCHH
Confidence 56999999999999999999999999999999999999887 9999998731 368888875444456888
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCCh-hHHHHHHH---HH-HhccchhhhHHHHHHHcCCCccccccccCc
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP-EIDAFMKA---VA-VAGQETSLVTDYVLKILGLDICADTMVGDE 338 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~-~~~~~~~~---~~-~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (824)
+++..+.... .........-.......+.. .+..+... .. ..+.+....++.+++.+||.. +..++
T Consensus 85 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~--~~~~~-- 155 (635)
T PRK11147 85 DFVAEGIEEQ-----AEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP--DAALS-- 155 (635)
T ss_pred HHHHHhhHHH-----HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC--CCchh--
Confidence 8764321100 00000000000000000000 00000000 00 001122345778999999963 55554
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|+|++. |+...+.++||+|++|+
T Consensus 156 ---~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivs-Hd~~~l~~~~d~i~~L~ 227 (635)
T PRK11147 156 ---SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFIS-HDRSFIRNMATRIVDLD 227 (635)
T ss_pred ---hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEe-CCHHHHHHhcCeEEEEE
Confidence 59999999999999999999999999999999999999999999986 24777765 45557888999999999
Q ss_pred CCeEE-EecChhhHH
Q 003389 419 EGQIV-YQGPRDNVL 432 (824)
Q Consensus 419 ~G~iv-~~G~~~~~~ 432 (824)
+|+++ |.|+.++..
T Consensus 228 ~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 228 RGKLVSYPGNYDQYL 242 (635)
T ss_pred CCEEEEecCCHHHHH
Confidence 99997 568776543
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=245.40 Aligned_cols=181 Identities=22% Similarity=0.283 Sum_probs=152.9
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lT 261 (824)
+.-.|-|||++|.+||++-|||||||||||||.-+.|.+.+....+|++++|++.++.... +|++|.++||+.+||+++
T Consensus 14 g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphls 93 (213)
T COG4136 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLS 93 (213)
T ss_pred CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccc
Confidence 4558999999999999999999999999999999999999988899999999999886543 689999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|.+||.|+.-..-.| + ..+..++..|+..||+...+.-+ .
T Consensus 94 Vg~Nl~fAlp~~~KG-----------~------------------------aRr~~a~aAL~~~gL~g~f~~dP-----~ 133 (213)
T COG4136 94 VGQNLLFALPATLKG-----------N------------------------ARRNAANAALERSGLDGAFHQDP-----A 133 (213)
T ss_pred cccceEEecCccccc-----------H------------------------HHHhhHHHHHHHhccchhhhcCh-----h
Confidence 999999975321111 0 01123566788999998887654 4
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
.||||||-||++-|+|+..|+.++||||+|.||..-+.++.+..-.-.+..|..+|.++|..
T Consensus 134 tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~ 195 (213)
T COG4136 134 TLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL 195 (213)
T ss_pred hcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 69999999999999999999999999999999999999998887766666788777776653
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-30 Score=302.11 Aligned_cols=187 Identities=24% Similarity=0.290 Sum_probs=151.3
Q ss_pred CcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEe-----------eCCcccCCCC-----
Q 003389 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT-----------YCGHELNEFV----- 242 (824)
Q Consensus 179 ~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~-----------~nG~~~~~~~----- 242 (824)
.+.++..+|++++ .+++|++++|+||||||||||||+|+|+++|+ +|+|. ++|+++....
T Consensus 82 ~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~ 157 (590)
T PRK13409 82 RYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRGTELQNYFKKLYN 157 (590)
T ss_pred EecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCChHHHHHHHHHhc
Confidence 3333346999999 99999999999999999999999999999997 99997 9998875321
Q ss_pred CCceEEEEecCCCCCCC---CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHH
Q 003389 243 PQRTCAYISQHDLHHGE---MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTD 319 (824)
Q Consensus 243 ~~~~i~yv~Q~d~~~~~---lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (824)
.+..+++.+|.....+. .||+|++.+.. ....++
T Consensus 158 ~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~-------------------------------------------~~~~~~ 194 (590)
T PRK13409 158 GEIKVVHKPQYVDLIPKVFKGKVRELLKKVD-------------------------------------------ERGKLD 194 (590)
T ss_pred cCcceeecccchhhhhhhhcchHHHHHHhhh-------------------------------------------HHHHHH
Confidence 12335666665433332 39998885310 001246
Q ss_pred HHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 003389 320 YVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA 399 (824)
Q Consensus 320 ~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIis 399 (824)
++++.+||.+..|+.+++ |||||||||+||++|+.+|++|+|||||++||+.++..+.+.|+++++ +.|+|++
T Consensus 195 ~~l~~l~l~~~~~~~~~~-----LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIiv 267 (590)
T PRK13409 195 EVVERLGLENILDRDISE-----LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVV 267 (590)
T ss_pred HHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEE
Confidence 688999999888888775 999999999999999999999999999999999999999999999975 7888887
Q ss_pred EccCchhHHhhcCeEEEEcCC
Q 003389 400 LLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 400 i~q~~~e~~~lfD~iilL~~G 420 (824)
.|+ ..++..++|+|++|.+|
T Consensus 268 sHd-~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 268 EHD-LAVLDYLADNVHIAYGE 287 (590)
T ss_pred eCC-HHHHHHhCCEEEEEeCC
Confidence 654 55788899999999864
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-29 Score=308.42 Aligned_cols=246 Identities=24% Similarity=0.342 Sum_probs=189.4
Q ss_pred hhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccc
Q 003389 98 QDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLV 177 (824)
Q Consensus 98 ~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~ 177 (824)
.+....++|+.+.+..+.... +...+.+.+.+...+.++|.+..-+
T Consensus 484 vqa~VS~~Ri~~fl~~~e~~~-----~~~~~~~~~~~~~~i~i~~~sfsW~----------------------------- 529 (1381)
T KOG0054|consen 484 VQAKVSLKRLKEFLLSEELDP-----DSVERSPDEAGENAIEIKNGSFSWD----------------------------- 529 (1381)
T ss_pred HHHHHHHHHHHHHhcCcccCc-----cccccCCCCCCCceEEEeeeeEecC-----------------------------
Confidence 456777788877776543311 1111234445555677777665421
Q ss_pred cCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCC
Q 003389 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH 257 (824)
Q Consensus 178 ~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~ 257 (824)
.....+.|+|||++|++|+++||+||-|||||+||.+|.|-++.. +|+|.++|. ++||+|++.++
T Consensus 530 --~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~gs----------iaYv~Q~pWI~ 594 (1381)
T KOG0054|consen 530 --SESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNGS----------VAYVPQQPWIQ 594 (1381)
T ss_pred --CCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcCe----------EEEeccccHhh
Confidence 112234899999999999999999999999999999999999875 999999985 89999998877
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
.. ||||||.|+..+. ....++.++++++.. +.--|+.+-.|.||+
T Consensus 595 ng-TvreNILFG~~~d-----------------------~~rY~~Vi~aC~L~~-----------Dle~Lp~GD~TeIGE 639 (1381)
T KOG0054|consen 595 NG-TVRENILFGSPYD-----------------------EERYDKVIKACALKK-----------DLEILPFGDLTEIGE 639 (1381)
T ss_pred CC-cHHHhhhcCcccc-----------------------HHHHHHHHHHccCHh-----------HHhhcCCCCcceecC
Confidence 54 9999999984321 112345556655432 122456778899997
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF-LKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~-L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+++. ||||||||+++|||+..++++++||.|.|++|+.+..+|.+. ++.+- .++|+|+++||- +....+|.|++
T Consensus 640 rGin-LSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L--~~KT~ILVTHql--~~L~~ad~Iiv 714 (1381)
T KOG0054|consen 640 RGIN-LSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL--RGKTVILVTHQL--QFLPHADQIIV 714 (1381)
T ss_pred CccC-CcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh--cCCEEEEEeCch--hhhhhCCEEEE
Confidence 6554 999999999999999999999999999999999999999854 54443 478999998863 67889999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|+|+..|+.+++.
T Consensus 715 l~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 715 LKDGKIVESGTYEELL 730 (1381)
T ss_pred ecCCeEecccCHHHHH
Confidence 9999999999999987
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-29 Score=310.80 Aligned_cols=259 Identities=22% Similarity=0.261 Sum_probs=202.8
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhcc-ccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTD-RVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLH 175 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~-~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 175 (824)
.+.....+||+.+-.+..+|... ..... ...-.|.+.++.|+|+++.+..
T Consensus 1100 lEn~m~SVERv~eY~~~~~E~p~---~~~~~~pp~~WP~~G~I~f~~~~~RYrp-------------------------- 1150 (1381)
T KOG0054|consen 1100 LENNMVSVERVLEYTDIPSEAPL---EIEESRPPPSWPSKGEIEFEDLSLRYRP-------------------------- 1150 (1381)
T ss_pred HHhcchhhhHHHHHhcCCCCCCC---CCcCCCCCCCCCCCCeEEEEEeEEEeCC--------------------------
Confidence 34567788999998886666111 11111 1222345689999999987532
Q ss_pred cccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEec
Q 003389 176 LVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQ 252 (824)
Q Consensus 176 ~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q 252 (824)
+...+|||||++|+|||.+||+|..|||||||.++|-++..|. +|+|.+||.++.+... |+.++.+||
T Consensus 1151 ------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~---~G~I~IDgvdI~~igL~dLRsrlsIIPQ 1221 (1381)
T KOG0054|consen 1151 ------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPA---EGEILIDGVDISKIGLHDLRSRLSIIPQ 1221 (1381)
T ss_pred ------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCcc---CCeEEEcCeecccccHHHHHhcCeeeCC
Confidence 1235999999999999999999999999999999999999886 9999999999987643 678999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccc
Q 003389 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d 332 (824)
|+.+|.. |||.||+=-. ....+++++|+...+.+. ..+ .++...|
T Consensus 1222 dPvLFsG-TvR~NLDPf~--------------------------e~sD~~IW~ALe~~~Lk~------~v~--~~p~~Ld 1266 (1381)
T KOG0054|consen 1222 DPVLFSG-TVRFNLDPFD--------------------------EYSDDEIWEALERCQLKD------VVS--SLPGGLD 1266 (1381)
T ss_pred CCceecC-ccccccCccc--------------------------ccCHHHHHHHHHHhChHH------HHh--hCCcCCC
Confidence 9988865 9999995211 123456666665443322 222 5666688
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+.|.+ .+..+|-||||-|++||||+++.+||+|||+|++.|+.|-..|.+.||+--+ ++||+.+-|.- .+.--+|
T Consensus 1267 ~~v~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~--dcTVltIAHRl--~TVmd~D 1341 (1381)
T KOG0054|consen 1267 SEVSE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK--DCTVLTIAHRL--NTVMDSD 1341 (1381)
T ss_pred ceecC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc--CCeEEEEeecc--chhhhcC
Confidence 88874 5567999999999999999999999999999999999999999999999764 78888765533 3555699
Q ss_pred eEEEEcCCeEEEecChhhHHH
Q 003389 413 DIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~~ 433 (824)
||+||++|+++++|+|+++++
T Consensus 1342 rVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1342 RVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred eEEEeeCCeEeecCChHHHHh
Confidence 999999999999999999874
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-29 Score=244.40 Aligned_cols=220 Identities=25% Similarity=0.392 Sum_probs=159.3
Q ss_pred hhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcc---cC-----CCC-
Q 003389 172 GLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE---LN-----EFV- 242 (824)
Q Consensus 172 ~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~---~~-----~~~- 242 (824)
.+.++.+.+ +...-.+||||.+.|||+++|+|.|||||||||+||++++.|+ +|+|.|.-.+ .+ +..
T Consensus 8 ~V~~lsk~Y-g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 8 SVSGLSKLY-GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred eehhhhhhh-CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEcCCCCchhHhhhchHHH
Confidence 333443333 3445789999999999999999999999999999999999998 9999996532 22 111
Q ss_pred ---CCceEEEEecCCCCCCCCCHH--HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhh
Q 003389 243 ---PQRTCAYISQHDLHHGEMTVR--ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLV 317 (824)
Q Consensus 243 ---~~~~i~yv~Q~d~~~~~lTV~--E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 317 (824)
.+..-|+|.|++.-=-.|+|- .|+ +-++...+.+ .--++ ...
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~Ni--GERlma~G~R-----------------HYG~i--------------R~~ 130 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNI--GERLMAIGAR-----------------HYGNI--------------RAE 130 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCcc--chhHHhhhhh-----------------hhhhH--------------HHH
Confidence 123479999986432223321 111 0011011100 00000 011
Q ss_pred HHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 003389 318 TDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397 (824)
Q Consensus 318 ~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvI 397 (824)
...+|+...++.. .+ |+.++..|||++||+.|||-|++.|++.||||||-|||.+-+..++++++.+.++.+..+|
T Consensus 131 a~~WL~~VEI~~~---Ri-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~v 206 (258)
T COG4107 131 AQDWLEEVEIDLD---RI-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV 206 (258)
T ss_pred HHHHHHhcccCcc---cc-cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEE
Confidence 3456777766532 12 4567889999999999999999999999999999999999999999999999998898888
Q ss_pred EEEccCchhHHhhcCeEEEEcCCeEEEecChhhHHH
Q 003389 398 VALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 398 isi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~~ 433 (824)
+++|. ..-+--++||.++|.+|++++.|-.+.+++
T Consensus 207 iVTHD-l~VarLla~rlmvmk~g~vve~GLTDrvLD 241 (258)
T COG4107 207 IVTHD-LAVARLLADRLMVMKQGQVVESGLTDRVLD 241 (258)
T ss_pred EEech-hHHHHHhhhcceeecCCCEecccccccccc
Confidence 87664 445556799999999999999999888753
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=316.46 Aligned_cols=197 Identities=23% Similarity=0.326 Sum_probs=153.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
++++|+|||++|++|++++|+|||||||||||++|+|.++|. +|+|.++ +.++|++|++.++ ..||
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~---~G~i~~~----------~~i~yv~Q~~~l~-~~Tv 737 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRVWAE----------RSIAYVPQQAWIM-NATV 737 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEEC----------CeEEEEeCCCccC-CCcH
Confidence 456999999999999999999999999999999999999987 9999863 4699999998766 5799
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.|+.... .+ ..++.++++. .+..++.+ ++..+|.+|+ .+..
T Consensus 738 ~enI~~~~~~~--------------~~---------~~~~~~~~~~---------l~~~l~~l--~~g~~t~i~~-~g~~ 782 (1560)
T PTZ00243 738 RGNILFFDEED--------------AA---------RLADAVRVSQ---------LEADLAQL--GGGLETEIGE-KGVN 782 (1560)
T ss_pred HHHHHcCChhh--------------HH---------HHHHHHHHhh---------hHHHHHHh--hccchHHhcC-CCCC
Confidence 99999852100 00 0111111111 12234444 2233566664 3567
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFL-KQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L-~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+|||||+.+|++++|||||++||+.++..+++.+ .... .++|+|+++|++. ..+.||+|++|++|+
T Consensus 783 LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~--~~~TvIlvTH~~~--~~~~ad~ii~l~~G~ 858 (1560)
T PTZ00243 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL--AGKTRVLATHQVH--VVPRADYVVALGDGR 858 (1560)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh--CCCEEEEEeCCHH--HHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999998754 3322 4789999888764 447899999999999
Q ss_pred EEEecChhhHH
Q 003389 422 IVYQGPRDNVL 432 (824)
Q Consensus 422 iv~~G~~~~~~ 432 (824)
++++|+.+++.
T Consensus 859 i~~~G~~~~l~ 869 (1560)
T PTZ00243 859 VEFSGSSADFM 869 (1560)
T ss_pred EEEecCHHHHH
Confidence 99999998875
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=243.62 Aligned_cols=143 Identities=30% Similarity=0.507 Sum_probs=121.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+++|++|++|++++|+||||||||||+++|+|.+++. +|+|+++|.++..... ++.++|++|
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q-------- 80 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRRRIGYVPQ-------- 80 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccCCHHHHHhceEEEee--------
Confidence 36999999999999999999999999999999999999886 9999999987643200 011222221
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
T Consensus 81 -------------------------------------------------------------------------------- 80 (157)
T cd00267 81 -------------------------------------------------------------------------------- 80 (157)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
|||||+||++||++++.+|++++|||||+|||..+...+.+.|+++.+. +.|++++.|+ ..++...||++++|++|
T Consensus 81 --lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~-~~~~~~~~d~i~~l~~g 156 (157)
T cd00267 81 --LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHD-PELAELAADRVIVLKDG 156 (157)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCC-HHHHHHhCCEEEEEeCc
Confidence 8999999999999999999999999999999999999999999998764 6788887665 45677789999999987
Q ss_pred e
Q 003389 421 Q 421 (824)
Q Consensus 421 ~ 421 (824)
+
T Consensus 157 ~ 157 (157)
T cd00267 157 K 157 (157)
T ss_pred C
Confidence 5
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-28 Score=278.68 Aligned_cols=220 Identities=29% Similarity=0.344 Sum_probs=165.3
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
+.+++++|+|+.+.+|+.++|+|+||||||||||+|+|...|+ +|+|...+. -.++|++|+....+..|
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~--------~~v~~l~Q~~~~~~~~t 82 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG--------LRVGYLSQEPPLDPEKT 82 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC--------ceEEEeCCCCCcCCCcc
Confidence 4678999999999999999999999999999999999999987 999987542 35999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCCh---hHHHHHHHH-HHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP---EIDAFMKAV-AVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~---~~~~~~~~~-~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
|.+.+.-+..-. .++..+. +......+++ ..+.+.... ...+-.....+..+|.-||++.. ++.+++
T Consensus 83 v~~~v~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~ 153 (530)
T COG0488 83 VLDYVIEGFGEL-----RELLAEL---EEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSS 153 (530)
T ss_pred HHHHHHhhhHHH-----HHHHHHH---HHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhh
Confidence 999987654211 1111111 1110001111 011111110 11122233467788999999877 777775
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
||||||.||++|++|+.+|++|+|||||+.||..+..-+-+.|++. .| |+|++ +|++.-+-+.|++|+-+
T Consensus 154 -----LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiV-SHDR~FLd~V~t~I~~l 223 (530)
T COG0488 154 -----LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVV-SHDRYFLDNVATHILEL 223 (530)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEE-eCCHHHHHHHhhheEEe
Confidence 9999999999999999999999999999999999999999999864 35 66665 56787788899999999
Q ss_pred cCCeEE-EecChhhH
Q 003389 418 SEGQIV-YQGPRDNV 431 (824)
Q Consensus 418 ~~G~iv-~~G~~~~~ 431 (824)
+.|++. |.|..+..
T Consensus 224 d~g~l~~y~Gny~~~ 238 (530)
T COG0488 224 DRGKLTPYKGNYSSY 238 (530)
T ss_pred cCCceeEecCCHHHH
Confidence 999875 66765543
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-28 Score=236.79 Aligned_cols=134 Identities=35% Similarity=0.547 Sum_probs=117.2
Q ss_pred ccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC---CCCceEEEEecCCCCCCCCCHH
Q 003389 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF---VPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 187 L~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~---~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
|+|||++|++|++++|+||||||||||+++|+|..++. +|+|.+||.++... ..++.++|++|++.+++.+||+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD---SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES---EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccc---ccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999999999999999886 99999999998762 2357899999999999999999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||.. ...++++++.+++.+..++.++... ..|
T Consensus 78 ~~~~-----------------------------------------------~~~~~~~l~~l~~~~~~~~~~~~~~-~~L 109 (137)
T PF00005_consen 78 ENES-----------------------------------------------DERIEEVLKKLGLEDLLDRKIGQRA-SSL 109 (137)
T ss_dssp HHHH-----------------------------------------------HHHHHHHHHHTTHGGGTGSBGTSCG-GGS
T ss_pred cccc-----------------------------------------------ccccccccccccccccccccccccc-chh
Confidence 9810 0124567889999888888886543 679
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCC
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEIST 371 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTs 371 (824)
||||||||+||++|+.+|++++|||||+
T Consensus 110 S~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 110 SGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp CHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-28 Score=290.54 Aligned_cols=232 Identities=19% Similarity=0.203 Sum_probs=146.9
Q ss_pred hhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEe
Q 003389 172 GLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYIS 251 (824)
Q Consensus 172 ~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~ 251 (824)
.+.++...+. ++.+|+|+|++|++|+.++|+|||||||||||++|+|......+.+|+ ++|+.
T Consensus 179 ~i~nls~~y~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~----------------I~~~~ 241 (718)
T PLN03073 179 HMENFSISVG-GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQ----------------ILHVE 241 (718)
T ss_pred EEceEEEEeC-CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCE----------------EEEEe
Confidence 3334443332 346999999999999999999999999999999999974111112344 55555
Q ss_pred cCCCCCCCCCHHHHHHHhhhhc-C-CchhhHHHHHhHHHHHh-----------cCCCCCh---hHHHHHHHHHHh-ccch
Q 003389 252 QHDLHHGEMTVRETLDFSGRCL-G-VGTRYELLAELSRREKQ-----------AGIKPDP---EIDAFMKAVAVA-GQET 314 (824)
Q Consensus 252 Q~d~~~~~lTV~E~L~f~a~~~-~-~~~~~~~~~~~~~~e~~-----------~~i~~~~---~~~~~~~~~~~~-~~~~ 314 (824)
|+.. ....|+.+.+.-+..-. . ......+.......+.. .+..++. .+++..+..... ....
T Consensus 242 Q~~~-g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 320 (718)
T PLN03073 242 QEVV-GDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTA 320 (718)
T ss_pred ccCC-CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchH
Confidence 5422 23445544432110000 0 00000000000000000 0000000 111111111111 1123
Q ss_pred hhhHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 003389 315 SLVTDYVLKILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD 393 (824)
Q Consensus 315 ~~~~~~iL~~lgL~-~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~ 393 (824)
..++..+|+.+||. +..++.++ .|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +
T Consensus 321 ~~r~~~~L~~lgl~~~~~~~~~~-----~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~ 391 (718)
T PLN03073 321 EARAASILAGLSFTPEMQVKATK-----TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----P 391 (718)
T ss_pred HHHHHHHHHHCCCChHHHhCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----C
Confidence 44577889999996 44566665 49999999999999999999999999999999999999999999885 5
Q ss_pred cEEEEEEccCchhHHhhcCeEEEEcCCeEE-EecChhhH
Q 003389 394 VTMIVALLQPAPETYDLFDDIILLSEGQIV-YQGPRDNV 431 (824)
Q Consensus 394 ~tvIisi~q~~~e~~~lfD~iilL~~G~iv-~~G~~~~~ 431 (824)
.|+|++.|+ ...+.++||+|++|++|+++ |.|+.++.
T Consensus 392 ~tviivsHd-~~~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 392 KTFIVVSHA-REFLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred CEEEEEECC-HHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 688887654 56778899999999999996 77876654
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-27 Score=244.52 Aligned_cols=191 Identities=21% Similarity=0.248 Sum_probs=130.2
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHH-HHHhcCcCCCCCCcceEeeCC-------ccc---CCC----CCCceE
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLM-LALAGKLGKDLRASGKITYCG-------HEL---NEF----VPQRTC 247 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL-~~LaG~l~~~~~~sG~I~~nG-------~~~---~~~----~~~~~i 247 (824)
+..+|+|||++|++||+++|+||||||||||+ ..+.. .|++.+.. ... ... ......
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA--------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH--------HHHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 45699999999999999999999999999996 44421 34332210 000 000 001123
Q ss_pred EEEecCCC--CCCCCCHHH---HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHH
Q 003389 248 AYISQHDL--HHGEMTVRE---TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 322 (824)
Q Consensus 248 ~yv~Q~d~--~~~~lTV~E---~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL 322 (824)
++..|++. ..+..+|.. ...+.. .+...+ + .... .+.|
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------------~~~~~~---------~--------------~~~~-~~~l 121 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLR-------------LLFARV---------G--------------IRER-LGFL 121 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHH-------------HHhhhh---------h--------------HHHH-HHHH
Confidence 34444332 123344432 111100 000000 0 0011 3468
Q ss_pred HHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHHcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 003389 323 KILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA 399 (824)
Q Consensus 323 ~~lgL~~-~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIis 399 (824)
+.+||.+ ..+..+. .|||||||||+||++|+.+| ++|+|||||+|||+.+...+.+.|+++++ .|.|+|++
T Consensus 122 ~~~~l~~~~~~~~~~-----~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~i 195 (226)
T cd03270 122 VDVGLGYLTLSRSAP-----TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVV 195 (226)
T ss_pred HHCCCCcccccCccC-----cCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEE
Confidence 8899975 4566554 59999999999999999998 59999999999999999999999999975 48899998
Q ss_pred EccCchhHHhhcCeEEEE------cCCeEEEec
Q 003389 400 LLQPAPETYDLFDDIILL------SEGQIVYQG 426 (824)
Q Consensus 400 i~q~~~e~~~lfD~iilL------~~G~iv~~G 426 (824)
.|++. ++ +.||++++| ++|+|+++|
T Consensus 196 tH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 196 EHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 87764 44 689999999 999999986
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-26 Score=243.28 Aligned_cols=196 Identities=22% Similarity=0.235 Sum_probs=138.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHh-----cCcC-----CC--CC------CcceEeeCCcccCCCCCCc
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALA-----GKLG-----KD--LR------ASGKITYCGHELNEFVPQR 245 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~La-----G~l~-----~~--~~------~sG~I~~nG~~~~~~~~~~ 245 (824)
..-|+|||..|+.|++++|.|+||||||||++.+. ..+. |. .. ..--|.++..++... ++.
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~-~rs 86 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRT-PRS 86 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCC-CCC
Confidence 34699999999999999999999999999998551 1111 10 00 011244444444211 000
Q ss_pred ------------------------------eEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCC
Q 003389 246 ------------------------------TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIK 295 (824)
Q Consensus 246 ------------------------------~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~ 295 (824)
.+.|..++...+.+|||.|++.|.....
T Consensus 87 ~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------------------- 144 (261)
T cd03271 87 NPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------------------- 144 (261)
T ss_pred cHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh----------------------
Confidence 1223333333345556666665542210
Q ss_pred CChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHHcC---CcEeEEeCCCC
Q 003389 296 PDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGT---ANVLYMDEIST 371 (824)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~---p~iLlLDEPTs 371 (824)
.......+|+.+||.. ..+..+ +.||||||||+.||++|+.+ |++++|||||+
T Consensus 145 ------------------~~~~~~~~L~~vgL~~l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPts 201 (261)
T cd03271 145 ------------------KIARKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTT 201 (261)
T ss_pred ------------------hHHHHHHHHHHcCCchhhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCC
Confidence 0112455788999976 355544 45999999999999999996 79999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE------cCCeEEEecCh
Q 003389 372 GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPR 428 (824)
Q Consensus 372 GLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL------~~G~iv~~G~~ 428 (824)
|||+.....+.+.|+++.+ .|.|+|++.|++. . .+.||+++.| .+|+++++|++
T Consensus 202 gLD~~~~~~l~~~L~~l~~-~g~tvIiitH~~~-~-i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 202 GLHFHDVKKLLEVLQRLVD-KGNTVVVIEHNLD-V-IKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-H-HHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 9999999999999999976 4889999887764 3 4679999999 89999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-26 Score=234.27 Aligned_cols=167 Identities=16% Similarity=0.227 Sum_probs=128.1
Q ss_pred cceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC------CCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD------LRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 188 ~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~------~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
+++++.+++| +++|+||||||||||+++|+|++.+. ....|++.++|++.......+.++|++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 99999999999999999999997653 123467888888765433347899999987655
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|... . ...++++++. .+..++.++
T Consensus 89 ------~~~~---~---------------------------------------~~~~~~~l~~---~~~~~~~~~----- 112 (197)
T cd03278 89 ------YSII---S---------------------------------------QGDVSEIIEA---PGKKVQRLS----- 112 (197)
T ss_pred ------eeEE---e---------------------------------------hhhHHHHHhC---CCccccchh-----
Confidence 2110 0 0012334444 334455544
Q ss_pred CCCHHHHHHHHHHHHHH----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 342 GISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv----~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.||||||||++||++|+ .+|++++|||||+|||+.....+.+.|+++++ +.|+|++.|++. ..+.||+++.+
T Consensus 113 ~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~--~~tiIiitH~~~--~~~~~d~v~~~ 188 (197)
T cd03278 113 LLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK--ETQFIVITHRKG--TMEAADRLYGV 188 (197)
T ss_pred hcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHH--HHhhcceEEEE
Confidence 59999999999999987 57799999999999999999999999999864 578888877653 45789999999
Q ss_pred cC
Q 003389 418 SE 419 (824)
Q Consensus 418 ~~ 419 (824)
..
T Consensus 189 ~~ 190 (197)
T cd03278 189 TM 190 (197)
T ss_pred Ee
Confidence 64
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-26 Score=218.64 Aligned_cols=194 Identities=20% Similarity=0.258 Sum_probs=147.0
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcc--cC--CCC-------CCceEEEEe
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE--LN--EFV-------PQRTCAYIS 251 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~--~~--~~~-------~~~~i~yv~ 251 (824)
..++|+|||++++.||+++|=|||||||||||++|-|.+.|+ +|+|++.-.. ++ ... .++++|||+
T Consensus 23 ~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVS 99 (235)
T COG4778 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVS 99 (235)
T ss_pred EeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEeCcchhhhhccChHHHHHHHHhhhHHHH
Confidence 457999999999999999999999999999999999999998 9999985432 21 111 246899999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc
Q 003389 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (824)
Q Consensus 252 Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (824)
|--..+|...-.|-++-.+.-+|+.. .........+|..|+++...
T Consensus 100 QFLRviPRV~aLdVvaePll~~gv~~----------------------------------~~a~~~a~~Ll~rLnlperL 145 (235)
T COG4778 100 QFLRVIPRVSALDVVAEPLLARGVPR----------------------------------EVARAKAADLLTRLNLPERL 145 (235)
T ss_pred HHHHhccCcchHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCHHH
Confidence 98777777665555544333333210 01112345688899987544
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf 411 (824)
=.. .+...||||+|||.|||.++.+-+||+|||||+.||..++.-++++|++-.. .| +.++-|.|+.+--...+
T Consensus 146 W~L----aPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka-~G-aAlvGIFHDeevre~va 219 (235)
T COG4778 146 WSL----APATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKA-RG-AALVGIFHDEEVREAVA 219 (235)
T ss_pred hcC----CCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHh-cC-ceEEEeeccHHHHHHHh
Confidence 322 2457999999999999999999999999999999999999999999998643 34 55666666665555689
Q ss_pred CeEEEEcC
Q 003389 412 DDIILLSE 419 (824)
Q Consensus 412 D~iilL~~ 419 (824)
||++-+..
T Consensus 220 dR~~~~~~ 227 (235)
T COG4778 220 DRLLDVSA 227 (235)
T ss_pred hheeeccc
Confidence 99988754
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-25 Score=254.25 Aligned_cols=201 Identities=25% Similarity=0.317 Sum_probs=158.6
Q ss_pred HhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEE
Q 003389 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAY 249 (824)
Q Consensus 170 ~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~y 249 (824)
++.+.++.+.+.+++.+++++|+.|.+|+.++|+||||+|||||||+|+|...|. +|+|.+.- .-.+||
T Consensus 321 vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~--------~v~igy 389 (530)
T COG0488 321 VLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGE--------TVKIGY 389 (530)
T ss_pred eEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCC--------ceEEEE
Confidence 3455666666655578999999999999999999999999999999999999886 99998753 235899
Q ss_pred EecCC-CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC
Q 003389 250 ISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD 328 (824)
Q Consensus 250 v~Q~d-~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~ 328 (824)
..|+. .+.++.|+.|++.-.. |+.. ...+...|..++++
T Consensus 390 f~Q~~~~l~~~~t~~d~l~~~~-------------------------~~~~---------------e~~~r~~L~~f~F~ 429 (530)
T COG0488 390 FDQHRDELDPDKTVLEELSEGF-------------------------PDGD---------------EQEVRAYLGRFGFT 429 (530)
T ss_pred EEehhhhcCccCcHHHHHHhhC-------------------------cccc---------------HHHHHHHHHHcCCC
Confidence 99986 3347779998885321 0000 11244578888886
Q ss_pred c-cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhH
Q 003389 329 I-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (824)
Q Consensus 329 ~-~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~ 407 (824)
. ...++|+ .||||||.||.+|+.++.+|.+|+|||||+.||..+...+.+.|.+. .+|+|+++ |+..-+
T Consensus 430 ~~~~~~~v~-----~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VS-HDr~Fl 499 (530)
T COG0488 430 GEDQEKPVG-----VLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVS-HDRYFL 499 (530)
T ss_pred hHHHhCchh-----hcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEe-CCHHHH
Confidence 3 3455665 49999999999999999999999999999999999999999999885 46777765 556678
Q ss_pred HhhcCeEEEEcCCeEEE-ecChhhHH
Q 003389 408 YDLFDDIILLSEGQIVY-QGPRDNVL 432 (824)
Q Consensus 408 ~~lfD~iilL~~G~iv~-~G~~~~~~ 432 (824)
-.+|++++++.+ ++.. .|..++..
T Consensus 500 ~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 500 DRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred HhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 889999999998 5544 47765544
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.8e-25 Score=246.84 Aligned_cols=205 Identities=24% Similarity=0.395 Sum_probs=163.4
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCC----ceEEEEecC---CCCCC
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCAYISQH---DLHHG 258 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~----~~i~yv~Q~---d~~~~ 258 (824)
.++||||++++||+++|-|--|||+|-|+++|.|..++. +|+|.+||+++....++ .-++||+.| +.++.
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~---~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l 350 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS---SGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVL 350 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC---CceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcC
Confidence 478999999999999999999999999999999977665 99999999988755443 458999987 56889
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccccccC
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGD 337 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~ 337 (824)
.++|++|+.++. +....... . +.++ .....++...+.|++. ...++.++
T Consensus 351 ~~sI~~Ni~l~~-l~~~~~~~-~---i~~~------------------------~e~~~~~~~~~~l~Ik~~s~~~~v~- 400 (500)
T COG1129 351 DMSIAENITLAS-LRRFSRRG-L---IDRR------------------------KERALAERYIRRLRIKTPSPEQPIG- 400 (500)
T ss_pred CCcHHHheehHh-hhhhcccc-c---cChH------------------------HHHHHHHHHHHhcCcccCCccchhh-
Confidence 999999998872 21110000 0 0000 0112345567777774 23345555
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.||||.+|+|.||+.|..+|++|+|||||.|.|..+..+|.+.|++++++ |++||+++ ...+|+..+||||+||
T Consensus 401 ----~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G~ail~iS-SElpEll~~~DRIlVm 474 (500)
T COG1129 401 ----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAILMIS-SELPELLGLSDRILVM 474 (500)
T ss_pred ----cCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-CCEEEEEe-CChHHHHhhCCEEEEE
Confidence 59999999999999999999999999999999999999999999999984 88888764 5678999999999999
Q ss_pred cCCeEEEecChh
Q 003389 418 SEGQIVYQGPRD 429 (824)
Q Consensus 418 ~~G~iv~~G~~~ 429 (824)
++|+++..-+.+
T Consensus 475 ~~Gri~~e~~~~ 486 (500)
T COG1129 475 REGRIVGELDRE 486 (500)
T ss_pred ECCEEEEEeccc
Confidence 999999754443
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-24 Score=229.07 Aligned_cols=186 Identities=17% Similarity=0.275 Sum_probs=125.5
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc----------------CCCCCCcc--------eEeeCCccc
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----------------GKDLRASG--------KITYCGHEL 238 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l----------------~~~~~~sG--------~I~~nG~~~ 238 (824)
+..++++++ |++++|+|||||||||||++|++.+ .++ +| +|.+++.+-
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~---~~~~~~~~~v~i~~~~~~~ 85 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG---SGPSVMSAYVEIIFDNSDN 85 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC---CCCCCceEEEEEEEEcCCC
Confidence 456888887 7899999999999999999998443 222 34 555555321
Q ss_pred ------CCCCCCceEEEEecCCCCCC-CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhc
Q 003389 239 ------NEFVPQRTCAYISQHDLHHG-EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAG 311 (824)
Q Consensus 239 ------~~~~~~~~i~yv~Q~d~~~~-~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~ 311 (824)
.+...++.++|++|+..+++ ..|..|...+...+ +... ....
T Consensus 86 ~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~-gl~~-------------------~~~~----------- 134 (243)
T cd03272 86 RFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESA-GFSR-------------------SNPY----------- 134 (243)
T ss_pred ccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHc-CCCC-------------------CCCc-----------
Confidence 11122466888888766665 35766655543322 2110 0000
Q ss_pred cchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHc----CCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 003389 312 QETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG----TANVLYMDEISTGLDSSTTFQICKFLKQ 387 (824)
Q Consensus 312 ~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~----~p~iLlLDEPTsGLDs~t~~~I~~~L~~ 387 (824)
.....+.+.+.+++....+..+ +.||||||||++||++|+. +|++++|||||+|||+.++..+.+.|++
T Consensus 135 --~~~~qg~i~~l~~l~~~~~~~~-----~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~ 207 (243)
T cd03272 135 --YIVPQGKINSLTNMKQDEQQEM-----QQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKE 207 (243)
T ss_pred --EEEEcCchHHhhhccccccccc-----cccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 0000112334455554444444 4599999999999999973 6899999999999999999999999999
Q ss_pred HHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 388 MVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 388 l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
+++ +.++|++ ||. +++.++||++++|.
T Consensus 208 ~~~--~~~ii~~-~h~-~~~~~~~d~i~~l~ 234 (243)
T cd03272 208 LSD--GAQFITT-TFR-PELLEVADKFYGVK 234 (243)
T ss_pred HhC--CCEEEEE-ecC-HHHHhhCCEEEEEE
Confidence 864 5555554 444 57889999999995
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.4e-26 Score=218.89 Aligned_cols=197 Identities=27% Similarity=0.410 Sum_probs=164.4
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCCCH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~lTV 262 (824)
-|-.+|+.+..||+.-++|||||||||||-.++|+.+. +|+|.++|.++..... .|.-+|..|+..-.+.|.|
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV 89 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPV 89 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhh
Confidence 46778999999999999999999999999999999764 9999999999875432 3667999999888888999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
...|...- |+.+. ...++++...++|++...+.+ ..
T Consensus 90 ~~YL~L~q-------------------------P~~~~--------------a~~i~~i~~~L~l~DKL~Rs~-----~q 125 (248)
T COG4138 90 WHYLTLHQ-------------------------PDKTR--------------TELLNDVAGALALDDKLGRST-----NQ 125 (248)
T ss_pred hhhhhhcC-------------------------chHHH--------------HHHHHHHHhhhcccchhhhhh-----hh
Confidence 99886641 11111 123567888999988776555 45
Q ss_pred CCHHHHHHHHHHHHHHc-----C--CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 343 ISGGQKKRVTTGEMLVG-----T--ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~-----~--p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
|||||-|||-+|-..+. | .++|+||||.++||...+..+-..|.++++ .|.+||++. |+...+.+.+|+++
T Consensus 126 LSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~-~G~~vims~-HDLNhTLrhA~~~w 203 (248)
T COG4138 126 LSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-QGLAIVMSS-HDLNHTLRHAHRAW 203 (248)
T ss_pred cCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh-CCcEEEEec-cchhhHHHHHHHHH
Confidence 99999999999965543 3 369999999999999999999999999997 599999986 55678999999999
Q ss_pred EEcCCeEEEecChhhHH
Q 003389 416 LLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (824)
+|+.|++...|.+++++
T Consensus 204 LL~rG~l~~~G~~~eVl 220 (248)
T COG4138 204 LLKRGKLLASGRREEVL 220 (248)
T ss_pred HHhcCeEEeecchhhhc
Confidence 99999999999999885
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-25 Score=229.39 Aligned_cols=186 Identities=17% Similarity=0.263 Sum_probs=134.1
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
++..+|+++++ ++++|+||||||||||+++|.- ++|.+.... ..+.+++++|+...++.+|
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~-------------~~G~~~~~~-~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF-------------VFGFRASKM-RQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH-------------HhccCHHHh-hhhhHHHHhcCCCCCCCCc
Confidence 45678999987 8999999999999999999972 233332221 1346889999888888999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
++|.+.+.....+.+ .+. ..++..... ......+++++.++|++..++.++
T Consensus 76 ~~~~~~~~~~~~~~~----~l~-------~~g~~~~~~-------------~~~v~~~~~~~~~~L~~~~~~~~~----- 126 (212)
T cd03274 76 SCSVEVHFQEIIDKP----LLK-------SKGIDLDHN-------------RFLILQGEVEQIAQMPKKSWKNIS----- 126 (212)
T ss_pred eEEEEEEEEeCCCHH----HHH-------HCCcCCCCC-------------ceEEcCCcEEEeeccccccccchh-----
Confidence 999877765432210 000 000000000 000001345678888888887765
Q ss_pred CCCHHHHHHHHHHHHHHc----CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 342 GISGGQKKRVTTGEMLVG----TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~----~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.+|+|||||++||++++. +|+++++||||+|||+.+...+.+.|+++++ +.|+|+++|+ +++.++||++++|
T Consensus 127 ~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~--~~~~iivs~~--~~~~~~~d~v~~~ 202 (212)
T cd03274 127 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK--NAQFIVISLR--NNMFELADRLVGI 202 (212)
T ss_pred hcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECc--HHHHHhCCEEEEE
Confidence 499999999999999973 5899999999999999999999999999854 5666666666 4788999999999
Q ss_pred cC
Q 003389 418 SE 419 (824)
Q Consensus 418 ~~ 419 (824)
..
T Consensus 203 ~~ 204 (212)
T cd03274 203 YK 204 (212)
T ss_pred Ee
Confidence 64
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.8e-24 Score=225.11 Aligned_cols=178 Identities=17% Similarity=0.231 Sum_probs=129.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCc-ccCCC-----CCCceEEEEecCC---------CCCCCCC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH-ELNEF-----VPQRTCAYISQHD---------LHHGEMT 261 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~-~~~~~-----~~~~~i~yv~Q~d---------~~~~~lT 261 (824)
..+++|+||||||||||+++|++.+.+. ..|++.+.|. ++... .....+.+++|++ ...+.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 4599999999999999999999998763 2467777776 32111 1134789999985 2456789
Q ss_pred HHHHHHHhhhhcC-CchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC------------
Q 003389 262 VRETLDFSGRCLG-VGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD------------ 328 (824)
Q Consensus 262 V~E~L~f~a~~~~-~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~------------ 328 (824)
|.+++.+...... ...+ ......+..+|+.+||.
T Consensus 103 V~r~I~~~~~~~~~in~~---------------------------------~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~ 149 (251)
T cd03273 103 VTRQIVLGGTNKYLINGH---------------------------------RAQQQRVQDLFQSVQLNVNNPHFLIMQGR 149 (251)
T ss_pred EEEEEEcCCceEEEECCE---------------------------------EeeHHHHHHHHHHcCCCCCCceEEEeehH
Confidence 9888865432110 0000 00011244566666664
Q ss_pred --------ccccccccCccCCCCCHHHHHHHHHHHHHH----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 003389 329 --------ICADTMVGDEMRRGISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396 (824)
Q Consensus 329 --------~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv----~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tv 396 (824)
+..++. ++.||||||||++||++|+ .+|+++++||||+|||+.+...+.+.|+++.+ |.++
T Consensus 150 v~~~~~~~~~~~~~-----~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~--g~~i 222 (251)
T cd03273 150 ITKVLNMGGVWKES-----LTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK--GSQF 222 (251)
T ss_pred HHHHHHhHHhhccc-----ccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC--CCEE
Confidence 223333 4469999999999999998 58899999999999999999999999999853 7788
Q ss_pred EEEEccCchhHHhhcCeEEEEc
Q 003389 397 IVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 397 Iisi~q~~~e~~~lfD~iilL~ 418 (824)
|++.|. +++.+.||+++-+.
T Consensus 223 i~iSH~--~~~~~~~d~v~~~~ 242 (251)
T cd03273 223 IVVSLK--EGMFNNANVLFRTR 242 (251)
T ss_pred EEEECC--HHHHHhCCEEEEEE
Confidence 888777 57888999998774
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-23 Score=214.46 Aligned_cols=167 Identities=22% Similarity=0.247 Sum_probs=122.7
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHh----cCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCC-----CCCCC
Q 003389 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALA----GKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHD-----LHHGE 259 (824)
Q Consensus 189 ~vs~~I~~Ge~~aLlGpnGSGKSTLL~~La----G~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d-----~~~~~ 259 (824)
..++.+.+| +++|+|||||||||||++|. |...++ +|.+..+...+.....+..+++++|++ .....
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~ 90 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRS 90 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEE
Confidence 345667788 99999999999999999995 877664 565552222223323346789999987 33445
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||.|++.+... . .++..+ + ..
T Consensus 91 ~~~~~~~~~~~~----------------~----------------------------~~~~~~---------~-----~~ 112 (204)
T cd03240 91 LAILENVIFCHQ----------------G----------------------------ESNWPL---------L-----DM 112 (204)
T ss_pred hhHhhceeeech----------------H----------------------------HHHHHH---------h-----cC
Confidence 678887755310 0 001111 2 23
Q ss_pred CCCCCHHHHHH------HHHHHHHHcCCcEeEEeCCCCCCCHHHHH-HHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 340 RRGISGGQKKR------VTTGEMLVGTANVLYMDEISTGLDSSTTF-QICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 340 ~rgLSGGqrqR------vsIA~aLv~~p~iLlLDEPTsGLDs~t~~-~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
++.||+||||| +++|++++.+|+++++||||++||+.+.. .+.+.|+++.+..+.++|++.|++. ..+.||
T Consensus 113 ~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d 190 (204)
T cd03240 113 RGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAAD 190 (204)
T ss_pred ccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCC
Confidence 45699999996 78999999999999999999999999999 9999999997644778999888753 457899
Q ss_pred eEEEEcC
Q 003389 413 DIILLSE 419 (824)
Q Consensus 413 ~iilL~~ 419 (824)
+++.|.+
T Consensus 191 ~i~~l~~ 197 (204)
T cd03240 191 HIYRVEK 197 (204)
T ss_pred EEEEEee
Confidence 9999954
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.5e-23 Score=212.37 Aligned_cols=179 Identities=17% Similarity=0.120 Sum_probs=119.2
Q ss_pred cceeeEEe-CCeEEEEEcCCCCcHHHHHHHHhcCc-CCCCCCcceEeeC--CcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 188 KDVSGIVK-PSRMTLLLGPPGAGKTTLMLALAGKL-GKDLRASGKITYC--GHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 188 ~~vs~~I~-~Ge~~aLlGpnGSGKSTLL~~LaG~l-~~~~~~sG~I~~n--G~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
++|+|... +|++++|+|||||||||||++|++.+ .+. .+....+ ...+........+++++|++.... ++.
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~---~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~ 92 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKT---PRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVE 92 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCc---cccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEE
Confidence 56666543 58999999999999999999999654 222 3333322 111111122456899998863211 111
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
... +.. .+.+.+. ..++..++.+..+..+ +.|
T Consensus 93 r~~-------gl~-----------------------~~~~~~~-------------~~l~~g~l~~~l~~~~-----~~l 124 (213)
T cd03279 93 RSR-------GLD-----------------------YDQFTRI-------------VLLPQGEFDRFLARPV-----STL 124 (213)
T ss_pred Eec-------CCC-----------------------HHHHHHh-------------hhhhhcchHHHhcCCc-----ccc
Confidence 110 110 0000000 0122223333334444 459
Q ss_pred CHHHHHHHHHHHHHHc----------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 344 SGGQKKRVTTGEMLVG----------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~----------~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
|||||||+++|++|+. +|++++|||||+|||+.+...+.+.|+++++ .+.|+|++.|++ ..+...+|+
T Consensus 125 S~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~-~~~tii~itH~~-~~~~~~~~~ 202 (213)
T cd03279 125 SGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT-ENRMVGVISHVE-ELKERIPQR 202 (213)
T ss_pred CHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECch-HHHHhhCcE
Confidence 9999999999999985 5789999999999999999999999999975 378888887765 467788999
Q ss_pred EEEEcCCe
Q 003389 414 IILLSEGQ 421 (824)
Q Consensus 414 iilL~~G~ 421 (824)
++++++|.
T Consensus 203 i~~~~~~~ 210 (213)
T cd03279 203 LEVIKTPG 210 (213)
T ss_pred EEEEecCC
Confidence 99999885
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=9e-22 Score=240.11 Aligned_cols=106 Identities=25% Similarity=0.277 Sum_probs=92.2
Q ss_pred HHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHHcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 003389 319 DYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394 (824)
Q Consensus 319 ~~iL~~lgL~~-~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p---~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~ 394 (824)
...|+.+||.. ..+..+. .||||||||+.||++|+.+| ++++|||||+|||+.+...+++.|+++.+ .|.
T Consensus 811 l~~L~~vgL~~l~l~~~~~-----tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~-~G~ 884 (943)
T PRK00349 811 LQTLVDVGLGYIKLGQPAT-----TLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD-KGN 884 (943)
T ss_pred HHHHHHCCCCcccccCCcc-----cCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC
Confidence 45788999975 4565554 59999999999999999999 99999999999999999999999999975 488
Q ss_pred EEEEEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHH
Q 003389 395 TMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (824)
Q Consensus 395 tvIisi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~ 432 (824)
|+|++.|++. . ...+|+|+.| .+|++++.|+++++.
T Consensus 885 TVIiitH~~~-~-i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 885 TVVVIEHNLD-V-IKTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred EEEEEecCHH-H-HHhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 9999877764 3 4679999999 799999999998874
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-22 Score=227.89 Aligned_cols=181 Identities=26% Similarity=0.388 Sum_probs=138.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
...|++.++.|+||+-+.|.||||||||||+|+|+|+-+-. +|+|.+- ....+-|+||.+.+... |.|
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g---~G~I~~P--------~~~~~lflpQ~PY~p~G-tLr 473 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMP--------ADSALLFLPQRPYLPQG-TLR 473 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC---CCceecC--------CCCceEEecCCCCCCCc-cHH
Confidence 36899999999999999999999999999999999998876 7887653 23457899998776554 999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC-ccCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD-EMRRG 342 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~-~~~rg 342 (824)
|-|.|...... .+|. ...++|...||++..+..=+. +--+-
T Consensus 474 e~l~YP~~~~~--------------------~~d~------------------~l~~vL~~vgL~~L~~rl~~~~~W~~v 515 (604)
T COG4178 474 EALCYPNAAPD--------------------FSDA------------------ELVAVLHKVGLGDLAERLDEEDRWDRV 515 (604)
T ss_pred HHHhCCCCCCC--------------------CChH------------------HHHHHHHHcCcHHHHHHHhccCcHhhh
Confidence 99987531100 1111 234467777777766554322 23456
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
||+||||||++||.|+.+|+++||||.|++||..++..+.+.|++-. .+.|+|-+.|++. ...+.++.+-+.
T Consensus 516 LS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 516 LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred cChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccchh--hHHHHhhheeec
Confidence 99999999999999999999999999999999999999999999854 3677776666554 455566655543
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-21 Score=244.06 Aligned_cols=104 Identities=20% Similarity=0.309 Sum_probs=90.8
Q ss_pred HHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHH---cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 003389 321 VLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLV---GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396 (824)
Q Consensus 321 iL~~lgL~~~-~dt~vg~~~~rgLSGGqrqRvsIA~aLv---~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tv 396 (824)
+|+.+||.+. .+..+. .|||||||||.||++|+ .+|++|+|||||+|||+.+..++++.|+++++ .|.|+
T Consensus 792 ~L~~vGL~~l~l~q~~~-----tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~-~G~TV 865 (1809)
T PRK00635 792 ALCSLGLDYLPLGRPLS-----SLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTV 865 (1809)
T ss_pred HHHHcCCcchhhcCccc-----cCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEE
Confidence 6788999765 566654 59999999999999998 69999999999999999999999999999986 48898
Q ss_pred EEEEccCchhHHhhcCeEEEEc------CCeEEEecChhhHH
Q 003389 397 IVALLQPAPETYDLFDDIILLS------EGQIVYQGPRDNVL 432 (824)
Q Consensus 397 Iisi~q~~~e~~~lfD~iilL~------~G~iv~~G~~~~~~ 432 (824)
|++.|++. .+ +.+|++++|. +|+++..|+++++.
T Consensus 866 IiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 866 VIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 88776654 55 8999999996 79999999998875
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9e-22 Score=218.43 Aligned_cols=224 Identities=21% Similarity=0.279 Sum_probs=171.4
Q ss_pred HhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCccc-CCCCC----C
Q 003389 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL-NEFVP----Q 244 (824)
Q Consensus 170 ~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~-~~~~~----~ 244 (824)
+|++.++.-....+...+++|||+|+.||+++|.|-.|-|-+.|+.+|+|+.++. +|+|.++|+++ ....+ +
T Consensus 257 vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 257 VLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred EEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCEeccccCCHHHHHh
Confidence 3444444433333456799999999999999999999999999999999999776 79999999997 33332 2
Q ss_pred ceEEEEecCC---CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHH
Q 003389 245 RTCAYISQHD---LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYV 321 (824)
Q Consensus 245 ~~i~yv~Q~d---~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 321 (824)
.-++|||.|. .+.+++|+.||+.+...-..+-.+.. --+.+++ ...+..+
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g----------------~l~~~~i-----------~~~a~~l 386 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGG----------------FLDRRAI-----------RKFAREL 386 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhcccccccccc----------------ccCHHHH-----------HHHHHHH
Confidence 4589999975 46789999999988643211100000 0011111 1234567
Q ss_pred HHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 003389 322 LKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400 (824)
Q Consensus 322 L~~lgL~~~-~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi 400 (824)
++.++...+ .+++ .+.||||++||+-+||.|..+|++|+..+||.|||..++..|.+.|.+.++ .|+.|++ +
T Consensus 387 i~~fdVr~~~~~~~-----a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~-~G~AVLL-i 459 (501)
T COG3845 387 IEEFDVRAPSPDAP-----ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD-AGKAVLL-I 459 (501)
T ss_pred HHHcCccCCCCCcc-----hhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh-cCCEEEE-E
Confidence 888887633 2333 356999999999999999999999999999999999999999999999986 3655555 4
Q ss_pred ccCchhHHhhcCeEEEEcCCeEEEecChhh
Q 003389 401 LQPAPETYDLFDDIILLSEGQIVYQGPRDN 430 (824)
Q Consensus 401 ~q~~~e~~~lfD~iilL~~G~iv~~G~~~~ 430 (824)
....+|++.+||||.||++|+++...++++
T Consensus 460 S~dLDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 460 SEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred ehhHHHHHHhhheeeeeeCCceeccccccc
Confidence 677889999999999999999998887765
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-22 Score=218.81 Aligned_cols=191 Identities=19% Similarity=0.208 Sum_probs=144.2
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCC---ceEEEEecCCCCCCCCCH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~---~~i~yv~Q~d~~~~~lTV 262 (824)
=+..||++|+.||++-|+|.||||||||+++|.|+++|+ +|+|.+||++++...+. +..+-|+-|-.+|+.+--
T Consensus 338 hvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~ 414 (546)
T COG4615 338 HVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG 414 (546)
T ss_pred eecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC
Confidence 467899999999999999999999999999999999998 99999999999764332 223334433222221100
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
.|+ ++. ...++..|+.+.|.+.-.-.-|+--.-.
T Consensus 415 ~e~-----------------------------~as-----------------~q~i~~~LqrLel~~ktsl~d~~fs~~k 448 (546)
T COG4615 415 PEG-----------------------------KAS-----------------PQLIEKWLQRLELAHKTSLNDGRFSNLK 448 (546)
T ss_pred Ccc-----------------------------CCC-----------------hHHHHHHHHHHHHhhhhcccCCcccccc
Confidence 000 011 1124556666666554332222222335
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
||.|||||+++-.||+-+.+|+++||=-+.-||.-+..+.+.+--+-++.|+||+.+.|++ ..|..+||++.+++|++
T Consensus 449 LStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~ 526 (546)
T COG4615 449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQL 526 (546)
T ss_pred cccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCce
Confidence 9999999999999999999999999999999999999999888777777899999987765 47899999999999999
Q ss_pred EEecC
Q 003389 423 VYQGP 427 (824)
Q Consensus 423 v~~G~ 427 (824)
++.-+
T Consensus 527 ~e~tg 531 (546)
T COG4615 527 SELTG 531 (546)
T ss_pred eeccc
Confidence 97653
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.4e-21 Score=211.93 Aligned_cols=214 Identities=22% Similarity=0.313 Sum_probs=136.9
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCC-C
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM-T 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l-T 261 (824)
++.+++|+++.+.+|+-++|+|||||||||+|++|+|...|. +.+=.++.- .++ ...... +
T Consensus 87 g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~-p~~~d~y~l----------------s~e-~~ps~~~a 148 (614)
T KOG0927|consen 87 GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI-PEHIDFYLL----------------SRE-IEPSEKQA 148 (614)
T ss_pred CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCC-Ccccchhhh----------------ccc-CCCchHHH
Confidence 456999999999999999999999999999999999998874 111111111 111 111111 2
Q ss_pred HHHHHHHhhhhcCCchhhHHH-HHhHHHHHhcCCCCChhH----HHHHHHHHHhccchhhhHHHHHHHcCC-Cccccccc
Q 003389 262 VRETLDFSGRCLGVGTRYELL-AELSRREKQAGIKPDPEI----DAFMKAVAVAGQETSLVTDYVLKILGL-DICADTMV 335 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~-~~~~~~e~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~iL~~lgL-~~~~dt~v 335 (824)
|..-+.+...-+ .+++.. .++... .++.+. +.+.....+.....+..+..+|..+|. ++.++..+
T Consensus 149 v~~v~~~~~~e~---~rle~~~E~l~~~------~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~ 219 (614)
T KOG0927|consen 149 VQAVVMETDHER---KRLEYLAEDLAQA------CDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKV 219 (614)
T ss_pred HHHHhhhhHHHH---HHHHHHHHHHHhh------ccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHh
Confidence 222222221110 000000 011000 011111 112222222333333345556666665 45566665
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
- ++|||+|.|+++||+|..+|++|+|||||+|||..+..-+-+.|.+.-+ .++|++ .|+..-+=..|.+|+
T Consensus 220 ~-----~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~---~~lVi~-sh~QDfln~vCT~Ii 290 (614)
T KOG0927|consen 220 K-----DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR---IILVIV-SHSQDFLNGVCTNII 290 (614)
T ss_pred h-----ccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC---ceEEEE-ecchhhhhhHhhhhh
Confidence 4 5999999999999999999999999999999999999999999887532 155554 466667778999999
Q ss_pred EEcCCe-EEEecChhhHH
Q 003389 416 LLSEGQ-IVYQGPRDNVL 432 (824)
Q Consensus 416 lL~~G~-iv~~G~~~~~~ 432 (824)
-|.+++ +.|.|+.+...
T Consensus 291 ~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 291 HLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred eecccceeeecCCHHHHh
Confidence 999999 66778877654
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-20 Score=226.64 Aligned_cols=106 Identities=25% Similarity=0.280 Sum_probs=90.0
Q ss_pred HHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHHc---CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 003389 318 TDYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVG---TANVLYMDEISTGLDSSTTFQICKFLKQMVHILD 393 (824)
Q Consensus 318 ~~~iL~~lgL~~-~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~---~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~ 393 (824)
...+|+.+||.. ..+..+ +.|||||+|||.||++|+. +|++++|||||+|||+.....+++.|+++.+ .|
T Consensus 808 ~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~-~G 881 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD-QG 881 (924)
T ss_pred HHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC
Confidence 346788899975 345444 4599999999999999997 5999999999999999999999999999975 48
Q ss_pred cEEEEEEccCchhHHhhcCeEEEE------cCCeEEEecChhhH
Q 003389 394 VTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNV 431 (824)
Q Consensus 394 ~tvIisi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~ 431 (824)
.|+|++.|++. .+ +.||+|++| .+|++++.|+++++
T Consensus 882 ~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 882 NTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 89988877664 34 679999999 79999999998765
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-20 Score=203.96 Aligned_cols=171 Identities=25% Similarity=0.302 Sum_probs=134.3
Q ss_pred eeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHh
Q 003389 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFS 269 (824)
Q Consensus 190 vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~ 269 (824)
=.+.|..||+++++||||-||||+.++|||.++|+ +|+ .. .-.++|=||.-.--.+.||++-|.-.
T Consensus 360 ~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd---eg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~~~ 425 (591)
T COG1245 360 EEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD---EGS----EE-------DLKVSYKPQYISPDYDGTVEDLLRSA 425 (591)
T ss_pred cCCeeecceEEEEECCCCcchHHHHHHHhccccCC---CCC----Cc-------cceEeecceeecCCCCCcHHHHHHHh
Confidence 34566778899999999999999999999999997 776 11 22477777765555678999987543
Q ss_pred hhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 003389 270 GRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKK 349 (824)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrq 349 (824)
.+-. . ..+....++++-|.|+...|..|.+ |||||.|
T Consensus 426 ~~~~-~-------------------------------------~~s~~~~ei~~pl~l~~i~e~~v~~-----LSGGELQ 462 (591)
T COG1245 426 IRSA-F-------------------------------------GSSYFKTEIVKPLNLEDLLERPVDE-----LSGGELQ 462 (591)
T ss_pred hhhh-c-------------------------------------ccchhHHhhcCccchHHHHhccccc-----CCchhHH
Confidence 2211 0 0111234577788898888888765 9999999
Q ss_pred HHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 350 RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 350 RvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
||+||.+|..++++++||||++-||++.+..+-+.+|+++...++|++++-|. ..-+--+.||++|.+
T Consensus 463 RvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHD-i~~~dyvsDr~ivF~ 530 (591)
T COG1245 463 RVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHD-IYMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecc-eehhhhhhceEEEEe
Confidence 99999999999999999999999999999999999999999888888887654 333444688888875
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-20 Score=190.48 Aligned_cols=171 Identities=18% Similarity=0.155 Sum_probs=114.4
Q ss_pred ccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC----CCCCceEEEEecCCCCCCCCCH
Q 003389 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----FVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 187 L~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~----~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
++++++.+.+| +++|+|||||||||||.+|...+..... ....|..+.+ -.....+.+.+|+....+
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~----~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~---- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS----DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA---- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc----cccccccHHHHhhCCCCeEEEEEEEEcCCccC----
Confidence 46778888887 8899999999999999999754332100 0111221111 111345677777654333
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
| ... ... ...++++|+. .+..++.++ .
T Consensus 83 --~-----~~~----------~~~----------------------------~~~~~~~l~~---~~~~~~~~~-----~ 109 (198)
T cd03276 83 --N-----PLC----------VLS----------------------------QDMARSFLTS---NKAAVRDVK-----T 109 (198)
T ss_pred --C-----cCC----------HHH----------------------------HHHHHHHhcc---ccccCCccc-----c
Confidence 0 000 000 0113334444 455565554 5
Q ss_pred CCHHHHHHHHHHHHH----HcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHh-CC-cEEEEEEccCchhHHhhcCeEEE
Q 003389 343 ISGGQKKRVTTGEML----VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHI-LD-VTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 343 LSGGqrqRvsIA~aL----v~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~-~~-~tvIisi~q~~~e~~~lfD~iil 416 (824)
||+|||||++||++| +.+|++++|||||+|||..+...+.+.|+++++. .+ .|++++. |...++.++ |+|.+
T Consensus 110 lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~t-h~~~~i~~~-d~v~~ 187 (198)
T cd03276 110 LSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITP-QDISGLASS-DDVKV 187 (198)
T ss_pred cChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEEC-Ccccccccc-cceeE
Confidence 999999999999999 5899999999999999999999999999998653 13 4666655 555566664 99999
Q ss_pred EcCCe
Q 003389 417 LSEGQ 421 (824)
Q Consensus 417 L~~G~ 421 (824)
|..|+
T Consensus 188 ~~~~~ 192 (198)
T cd03276 188 FRMKD 192 (198)
T ss_pred EEecC
Confidence 98764
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.8e-21 Score=211.36 Aligned_cols=199 Identities=20% Similarity=0.249 Sum_probs=144.3
Q ss_pred hhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEe
Q 003389 172 GLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYIS 251 (824)
Q Consensus 172 ~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~ 251 (824)
.+.++.+.+..+..++++++|-|.+++.++++||||+|||||||++.|.+.|. .|.|.-.-+. .+++..
T Consensus 391 ~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~---~G~vs~~~H~--------~~~~y~ 459 (614)
T KOG0927|consen 391 MVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT---IGMVSRHSHN--------KLPRYN 459 (614)
T ss_pred EEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc---cccccccccc--------cchhhh
Confidence 34455566655557999999999999999999999999999999999999997 8887654332 233444
Q ss_pred cC--CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc
Q 003389 252 QH--DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (824)
Q Consensus 252 Q~--d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (824)
|+ +.+.-+.++-|++.=.. ++ ......+..+|..+||+.
T Consensus 460 Qh~~e~ldl~~s~le~~~~~~-------------------------~~--------------~~~~e~~r~ilgrfgLtg 500 (614)
T KOG0927|consen 460 QHLAEQLDLDKSSLEFMMPKF-------------------------PD--------------EKELEEMRSILGRFGLTG 500 (614)
T ss_pred hhhHhhcCcchhHHHHHHHhc-------------------------cc--------------cchHHHHHHHHHHhCCCc
Confidence 54 22333345555442110 11 011123456899999985
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh
Q 003389 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (824)
Q Consensus 330 ~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~ 409 (824)
..++. ..+.||+|||+||..|+.++.+|.+|+|||||+|||..+...+-+.|.++ .++||++. |+.--+-+
T Consensus 501 d~q~~----p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~----~Ggvv~vS-HDfrlI~q 571 (614)
T KOG0927|consen 501 DAQVV----PMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF----PGGVVLVS-HDFRLISQ 571 (614)
T ss_pred ccccc----chhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc----CCceeeee-chhhHHHH
Confidence 44433 23469999999999999999999999999999999999999999999875 34566654 45556778
Q ss_pred hcCeEEEEcCCeEE-EecChh
Q 003389 410 LFDDIILLSEGQIV-YQGPRD 429 (824)
Q Consensus 410 lfD~iilL~~G~iv-~~G~~~ 429 (824)
.+++|.+..+|.+. +.|...
T Consensus 572 VaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 572 VAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred HHHHhHhhccCceeecCccHH
Confidence 88888888887654 556543
|
|
| >PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.7e-22 Score=200.34 Aligned_cols=208 Identities=23% Similarity=0.309 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHHHHhhChhHH-HHHHHHHHHHHHHHHhhhccccCCCCCcccchhhHHHHHHHHHHHHHhhHHHH-HHHh
Q 003389 522 ELFRACFAREWLLMKRNSFVY-IFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAEN-AMTV 599 (824)
Q Consensus 522 ~q~~~~~~R~~~~~~R~~~~~-~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~~~g~lFf~~~~~~f~~~~~~-~~~~ 599 (824)
+|++++++|+++..+||+... ...+++.+++++++|.+|.+++... ++.++.|++++.++..++...... ....
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQ----DGFNRPGLIFGSIIFSFFSSISGSSISFE 76 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccccc----cccccceeeehhhHHhhhhhcccchhhhh
Confidence 489999999999999999877 8999999999999999999887222 222456777777776665544444 5566
Q ss_pred hhhhHHHHHhhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHc
Q 003389 600 LRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAV 679 (824)
Q Consensus 600 ~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl~~~iaa~ 679 (824)
.++.++.|++....|++++|.+++.+.+++..++.++++.++.|++.|++.+ +|+.+++.+++...++.+++.+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~ 154 (210)
T PF01061_consen 77 RERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAAL 154 (210)
T ss_pred hhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccc
Confidence 7889999999999999999999999999999999999999999999999988 78888899999999999999999999
Q ss_pred cCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhh
Q 003389 680 GRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEF 735 (824)
Q Consensus 680 ~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf 735 (824)
+++...++.+.+++..+++++||.++|.+.+|+|++|+.|+||++|+.|++..++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 155 FPSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999886
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-20 Score=186.97 Aligned_cols=219 Identities=18% Similarity=0.247 Sum_probs=161.5
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCC-CcceEeeCCcccCCCCCC-------ceEEEEecCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR-ASGKITYCGHELNEFVPQ-------RTCAYISQHD 254 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~-~sG~I~~nG~~~~~~~~~-------~~i~yv~Q~d 254 (824)
...++++||+++..||+-+|+|.||||||-..|+|+|..+.+-. ...+..+++.++-...++ +.+++++|++
T Consensus 19 ~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP 98 (330)
T COG4170 19 WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCc
Confidence 45689999999999999999999999999999999999775322 234455666665444432 4578999987
Q ss_pred CC--CCCCCHHHHHHHhhhhcC-CchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc
Q 003389 255 LH--HGEMTVRETLDFSGRCLG-VGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (824)
Q Consensus 255 ~~--~~~lTV~E~L~f~a~~~~-~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (824)
.- -|.-+|...|.-..-... .+..++-... .+.+.-++|..+|+.+..
T Consensus 99 ~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~W-----------------------------rKrrAIeLLHrVGIKdHk 149 (330)
T COG4170 99 QSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGW-----------------------------RKRRAIELLHRVGIKDHK 149 (330)
T ss_pred hhhcChHHHHHHHHHhhCccccccchHhhhhch-----------------------------hHHHHHHHHHHhccccHH
Confidence 43 343344332211100000 0000100000 112344578899998877
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf 411 (824)
|-+- .++.+|.-||-|+|.||.|++..|++|+.||||+.+|+.|+.+|.++|.++.+..+.|+++ +.|+...+-+.|
T Consensus 150 DIM~--SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL-~s~Dl~~is~W~ 226 (330)
T COG4170 150 DIMR--SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILL-ISHDLQMISQWA 226 (330)
T ss_pred HHHH--hCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEE-EcccHHHHHHHh
Confidence 7553 3567799999999999999999999999999999999999999999999999876666555 566777888999
Q ss_pred CeEEEEcCCeEEEecChhhHHH
Q 003389 412 DDIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 412 D~iilL~~G~iv~~G~~~~~~~ 433 (824)
|+|-||.-|+-++.++.+++++
T Consensus 227 d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 227 DKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred hheEEEEecccccccchhHHhc
Confidence 9999999999999999999864
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-20 Score=196.01 Aligned_cols=76 Identities=18% Similarity=0.346 Sum_probs=67.6
Q ss_pred CCCCHHHHHHHHHHHHHHcC----CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 341 RGISGGQKKRVTTGEMLVGT----ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~----p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
..||||||||++||++++.+ |++++|||||+|||+.+...+.+.|+++++ .|.++|++.|+ .+..+.||++++
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~-~g~~vi~isH~--~~~~~~~d~i~~ 230 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG-PNFQFIVISLK--EEFFSKADALVG 230 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc-CCcEEEEEECC--HHHHhhCCeEEE
Confidence 56999999999999999864 899999999999999999999999999975 37888888776 467789999999
Q ss_pred EcC
Q 003389 417 LSE 419 (824)
Q Consensus 417 L~~ 419 (824)
|..
T Consensus 231 ~~~ 233 (247)
T cd03275 231 VYR 233 (247)
T ss_pred EEe
Confidence 964
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-19 Score=176.87 Aligned_cols=205 Identities=23% Similarity=0.297 Sum_probs=149.1
Q ss_pred cCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC---CCCCceEEEEecC-
Q 003389 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE---FVPQRTCAYISQH- 253 (824)
Q Consensus 178 ~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~---~~~~~~i~yv~Q~- 253 (824)
.+++..-+++-|+|+.++.|.-++++|.||||||||||+|+|.--.. .|.|.++|.+.-. ........|+.-+
T Consensus 21 f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~---~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW 97 (291)
T KOG2355|consen 21 FKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG---GGVVQVLGRSAFHDTSLESSGDLSYLGGEW 97 (291)
T ss_pred EecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc---CCeEEEcCcCccccccccccCceeEecccc
Confidence 33444457999999999999999999999999999999999986543 6899999976411 1111223343321
Q ss_pred ---------CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHH
Q 003389 254 ---------DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKI 324 (824)
Q Consensus 254 ---------d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~ 324 (824)
-.+..++++.+-| |+.. +.+. .+-+.++++
T Consensus 98 ~~~~~~agevplq~D~sae~mi-fgV~---------------------------------------g~dp-~Rre~LI~i 136 (291)
T KOG2355|consen 98 SKTVGIAGEVPLQGDISAEHMI-FGVG---------------------------------------GDDP-ERREKLIDI 136 (291)
T ss_pred cccccccccccccccccHHHHH-hhcc---------------------------------------CCCh-hHhhhhhhh
Confidence 1122344444332 3211 1111 233556777
Q ss_pred cCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCc
Q 003389 325 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (824)
Q Consensus 325 lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~ 404 (824)
|.++-.. ..+.+|-|||+||.|+..|+.+-++|+|||.|--||..++.++++.|++-++..|.|||..+|- -
T Consensus 137 LDIdl~W-------RmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHI-F 208 (291)
T KOG2355|consen 137 LDIDLRW-------RMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHI-F 208 (291)
T ss_pred eeccceE-------EEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeee-c
Confidence 7765322 1234999999999999999999999999999999999999999999999999999999998763 3
Q ss_pred hhHHhhcCeEEEEcCCeEEEecChhhHHHH
Q 003389 405 PETYDLFDDIILLSEGQIVYQGPRDNVLEF 434 (824)
Q Consensus 405 ~e~~~lfD~iilL~~G~iv~~G~~~~~~~~ 434 (824)
.-......+++.++.|+++-.-+.+.+.++
T Consensus 209 DGLe~Wpthl~yi~~Gkl~~~l~~~~i~e~ 238 (291)
T KOG2355|consen 209 DGLETWPTHLVYIKSGKLVDNLKYQKIKEF 238 (291)
T ss_pred cchhhcchhEEEecCCeeeeccccchhhhh
Confidence 345567889999999999986666666553
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-19 Score=185.04 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-FLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~-~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
.+|+|+||++.+++++ .+|+++++|||++|||+.+...+.. .++++.+ .+.+++++.|+ .++.++||++++|.+|
T Consensus 91 ~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~--~~l~~~~d~~~~l~~g 166 (200)
T cd03280 91 TFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLE-RGALVIATTHY--GELKAYAYKREGVENA 166 (200)
T ss_pred hHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCH--HHHHHHHhcCCCeEEE
Confidence 4999999999999885 8999999999999999999999974 6777764 47888888775 4678999999999999
Q ss_pred eEEEec
Q 003389 421 QIVYQG 426 (824)
Q Consensus 421 ~iv~~G 426 (824)
++++++
T Consensus 167 ~l~~~~ 172 (200)
T cd03280 167 SMEFDP 172 (200)
T ss_pred EEEEec
Confidence 999874
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-18 Score=193.37 Aligned_cols=195 Identities=17% Similarity=0.257 Sum_probs=137.1
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
+..+++|+|+.|+.|+-++|.||||||||+||++|+|+-+.. +|+++--...- -+.+-|+||.|.+. ..|.
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~---~G~l~k~~~~~-----~~~lfflPQrPYmt-~GTL 517 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPST---GGKLTKPTDGG-----PKDLFFLPQRPYMT-LGTL 517 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccC---CCeEEecccCC-----CCceEEecCCCCcc-ccch
Confidence 445889999999999999999999999999999999998765 89987644321 14588999987654 3499
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
||-+.|...--.+ ......|.++.++++.+.+ ..+++..| ..|+.+-.+....
T Consensus 518 RdQvIYP~~~~~~---------------~~~~~~d~~i~r~Le~v~L---------~hl~~r~g---gld~~~~~dW~dv 570 (659)
T KOG0060|consen 518 RDQVIYPLKAEDM---------------DSKSASDEDILRILENVQL---------GHLLEREG---GLDQQVDWDWMDV 570 (659)
T ss_pred hheeeccCccccc---------------cccCCCHHHHHHHHHHhhh---------hhHHHHhC---CCCchhhccHHhh
Confidence 9988876321100 0000122333333333222 22333332 2333333334457
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
||+||+||++.||.+..+|++-+|||.||++|...+..+.+.+|+ .|.|.|-+-|.+ .....=|.++-|+.
T Consensus 571 LS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~----~giT~iSVgHRk--SL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 571 LSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE----MGITFISVGHRK--SLWKFHDYVLRMDG 641 (659)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH----cCCeEEEeccHH--HHHhhhhEEEEecC
Confidence 999999999999999999999999999999999999998888876 477877766654 45555677777764
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-18 Score=185.80 Aligned_cols=190 Identities=24% Similarity=0.313 Sum_probs=141.1
Q ss_pred HhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEE
Q 003389 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAY 249 (824)
Q Consensus 170 ~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~y 249 (824)
+|.+-++.+.+.+.++++++++|-|.=-.-++|+||||.||||||++|.|.+.|. .|+..-|- +-.||+
T Consensus 586 vLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~---~GE~RKnh--------rL~iG~ 654 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN---DGELRKNH--------RLRIGW 654 (807)
T ss_pred eeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC---cchhhccc--------eeeeec
Confidence 3455566677878889999999999999999999999999999999999999997 78754331 235888
Q ss_pred EecCC--CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCC
Q 003389 250 ISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (824)
Q Consensus 250 v~Q~d--~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL 327 (824)
..|+. .+-.+-|.-|.|.-... . | .......|-.+||
T Consensus 655 FdQh~~E~L~~Eetp~EyLqr~FN---l--------------------p------------------yq~ARK~LG~fGL 693 (807)
T KOG0066|consen 655 FDQHANEALNGEETPVEYLQRKFN---L--------------------P------------------YQEARKQLGTFGL 693 (807)
T ss_pred hhhhhHHhhccccCHHHHHHHhcC---C--------------------C------------------hHHHHHHhhhhhh
Confidence 88873 34445566665532111 0 0 0012335678999
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhH
Q 003389 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (824)
Q Consensus 328 ~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~ 407 (824)
...++|+- +..||||||-||++|+.-++.|+||||||||++||..+...+.+.|++. +..||++.|..+ .+
T Consensus 694 ~sHAHTik----ikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~VsHDeR-Li 764 (807)
T KOG0066|consen 694 ASHAHTIK----IKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIMVSHDER-LI 764 (807)
T ss_pred hhccceEe----eeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEEEecccc-ee
Confidence 88888863 4569999999999999999999999999999999999999999998875 345666556543 34
Q ss_pred HhhcCeEEEEcCC
Q 003389 408 YDLFDDIILLSEG 420 (824)
Q Consensus 408 ~~lfD~iilL~~G 420 (824)
.+.--.++|+.+-
T Consensus 765 ~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 765 VETDCNLWVVENQ 777 (807)
T ss_pred eecCceEEEEccC
Confidence 4444456666543
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.7e-18 Score=175.39 Aligned_cols=81 Identities=15% Similarity=0.220 Sum_probs=65.3
Q ss_pred CCCCCHHHHHHHHHHHHH----HcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEEEccCchhHHhhcC--
Q 003389 340 RRGISGGQKKRVTTGEML----VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD-VTMIVALLQPAPETYDLFD-- 412 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aL----v~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~-~tvIisi~q~~~e~~~lfD-- 412 (824)
+..||||||||+.++.+| +.+|+++++||||+|||+.++..+.+.|+++++..+ .++|+++|+.. +..+.+|
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~~ 202 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEKM 202 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCce
Confidence 346999999998887654 589999999999999999999999999999876424 46777766643 4556665
Q ss_pred eEEEEcCCe
Q 003389 413 DIILLSEGQ 421 (824)
Q Consensus 413 ~iilL~~G~ 421 (824)
+|++|++|+
T Consensus 203 ~v~~l~~g~ 211 (213)
T cd03277 203 TVLCVYNGP 211 (213)
T ss_pred EEEEEecCc
Confidence 788888886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-18 Score=191.24 Aligned_cols=190 Identities=21% Similarity=0.264 Sum_probs=125.9
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecC-CCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQH-DLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~-d~~~~~lT 261 (824)
.+.+|++-++++..|+-++|+|+||+||||||++|+. |.|..-. +.+- -.-.+++-. +.+..+ |
T Consensus 92 ~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~f~--veqE---~~g~~t~~~~~~l~~D-~ 156 (582)
T KOG0062|consen 92 GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSGFH--VEQE---VRGDDTEALQSVLESD-T 156 (582)
T ss_pred chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCccC--chhh---eeccchHHHhhhhhcc-H
Confidence 5679999999999999999999999999999999985 3332221 1100 001122211 112222 2
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
.++.+... +++-. ++.+...+.+.+|.-+|.+.-... ...+
T Consensus 157 ~~~dfl~~-------------------e~~l~----------------~~~~l~ei~~~~L~glGFt~emq~----~pt~ 197 (582)
T KOG0062|consen 157 ERLDFLAE-------------------EKELL----------------AGLTLEEIYDKILAGLGFTPEMQL----QPTK 197 (582)
T ss_pred HHHHHHHh-------------------hhhhh----------------ccchHHHHHHHHHHhCCCCHHHHh----cccc
Confidence 23222110 10000 000111223447888888643322 2245
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.+|||-|-|+++||||..+|++|||||||+.||..+..-+.+.|+.+ ..|++++. |++.-.-..|.+||-+++=+
T Consensus 198 slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~~T~liVS-HDr~FLn~V~tdIIH~~~~k 272 (582)
T KOG0062|consen 198 SLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----KITSLIVS-HDRNFLNTVCTDIIHLENLK 272 (582)
T ss_pred ccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----CceEEEEe-ccHHHHHHHHHHHHHHhhhh
Confidence 69999999999999999999999999999999999999999999875 35777654 66767777899999888766
Q ss_pred E-EEecChhhH
Q 003389 422 I-VYQGPRDNV 431 (824)
Q Consensus 422 i-v~~G~~~~~ 431 (824)
+ .|.|+-++.
T Consensus 273 L~~YkGN~~~F 283 (582)
T KOG0062|consen 273 LDYYKGNYSQF 283 (582)
T ss_pred hhhhcCcHHHH
Confidence 5 356765543
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-17 Score=183.11 Aligned_cols=193 Identities=21% Similarity=0.241 Sum_probs=143.1
Q ss_pred cccccCccccc-ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEec
Q 003389 174 LHLVPSKKRSV-RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQ 252 (824)
Q Consensus 174 ~~~~~~~~~~~-~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q 252 (824)
..+.+.+..+. +++.+++..++.-.-.+++|+||+||||++|++.|-+.|. .|-+.+++ +..++|-.|
T Consensus 366 ~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~---rgi~~~~~--------r~ri~~f~Q 434 (582)
T KOG0062|consen 366 SYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPT---RGIVGRHP--------RLRIKYFAQ 434 (582)
T ss_pred EeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcc---cceeeecc--------cceecchhH
Confidence 33444444444 6899999999999999999999999999999999988875 78776653 567999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccc
Q 003389 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d 332 (824)
+..-+-++.|-+- ++..+++ |.. ..+....-+..+||+.-.
T Consensus 435 hhvd~l~~~v~~v-d~~~~~~----------------------pG~---------------~~ee~r~hl~~~Gl~g~l- 475 (582)
T KOG0062|consen 435 HHVDFLDKNVNAV-DFMEKSF----------------------PGK---------------TEEEIRRHLGSFGLSGEL- 475 (582)
T ss_pred hhhhHHHHHhHHH-HHHHHhC----------------------CCC---------------CHHHHHHHHHhcCCCchh-
Confidence 8554444444332 2222211 100 011133457789996422
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
....+.+||||||-||++|.+...+|.+|+|||||+.||..+-..+.+.|+.+ ++.||++. |...-+-.+|+
T Consensus 476 ---a~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F----~GGVv~VS-Hd~~fi~~~c~ 547 (582)
T KOG0062|consen 476 ---ALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF----NGGVVLVS-HDEEFISSLCK 547 (582)
T ss_pred ---hhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc----CCcEEEEE-CcHHHHhhcCc
Confidence 11235679999999999999999999999999999999999999999999987 33455543 56667888999
Q ss_pred eEEEEcCCeEEE
Q 003389 413 DIILLSEGQIVY 424 (824)
Q Consensus 413 ~iilL~~G~iv~ 424 (824)
.+++.++|++.-
T Consensus 548 E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 548 ELWVVEDGKVTP 559 (582)
T ss_pred eeEEEcCCcEEe
Confidence 999999999863
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-16 Score=172.62 Aligned_cols=188 Identities=27% Similarity=0.380 Sum_probs=137.2
Q ss_pred ccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC-----CCCcceEeeCCcccCCCCCCceEEEEecC-C
Q 003389 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-----LRASGKITYCGHELNEFVPQRTCAYISQH-D 254 (824)
Q Consensus 181 ~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~-----~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~-d 254 (824)
.....+|+|||+.|+||++++|+|+|||||||||++|+|..... -+.+|.|.+--.. ..+.++-+ +
T Consensus 393 ~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~E 464 (593)
T COG2401 393 VIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYE 464 (593)
T ss_pred eeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCcccc
Confidence 34567999999999999999999999999999999999975321 1236766553211 23444433 2
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
.-+.+-|+.|.+.-- . .| + ....++|...||.+. .
T Consensus 465 p~f~~~tilehl~s~-----t--------------------GD--~---------------~~AveILnraGlsDA---v 499 (593)
T COG2401 465 PEFGEVTILEHLRSK-----T--------------------GD--L---------------NAAVEILNRAGLSDA---V 499 (593)
T ss_pred cccCchhHHHHHhhc-----c--------------------Cc--h---------------hHHHHHHHhhccchh---h
Confidence 334455666655210 0 01 0 012457888888643 2
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh-h-cC
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD-L-FD 412 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~-l-fD 412 (824)
.--...+.||-|||.|+.||.++...|.+++.||--+.||..|+..+.+.|.+++++.+.|.+++.|+| ++.+ + -|
T Consensus 500 lyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrp--Ev~~AL~PD 577 (593)
T COG2401 500 LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRP--EVGNALRPD 577 (593)
T ss_pred hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH--HHHhccCCc
Confidence 222344569999999999999999999999999999999999999999999999998899999998876 3443 4 58
Q ss_pred eEEEEcCCeEE
Q 003389 413 DIILLSEGQIV 423 (824)
Q Consensus 413 ~iilL~~G~iv 423 (824)
+++++.=|.+.
T Consensus 578 ~li~vgYg~v~ 588 (593)
T COG2401 578 TLILVGYGKVP 588 (593)
T ss_pred eeEEeeccccc
Confidence 88888766553
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=160.03 Aligned_cols=74 Identities=23% Similarity=0.367 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHHH----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 343 ISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv----~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
||||||||+++|++++ .+|+++++|||++|||+.....+.+.|+++++. +.++|++.|.+ +....+|+++.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~--~~~~~adrvi~i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKK--EMFENADKLIGVL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCH--HHHhhCCeEEEEE
Confidence 9999999999999996 699999999999999999999999999998763 68888887764 4567899999997
Q ss_pred C
Q 003389 419 E 419 (824)
Q Consensus 419 ~ 419 (824)
.
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 5
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.9e-17 Score=177.03 Aligned_cols=95 Identities=27% Similarity=0.367 Sum_probs=81.2
Q ss_pred hHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 003389 317 VTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396 (824)
Q Consensus 317 ~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tv 396 (824)
..+++.+.|+|++..|.-|.+ |||||-|||+||.+++++++++++|||||-||...+....+.+|++++. +++|
T Consensus 193 ~~devve~l~L~nvl~r~v~~-----LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~V 266 (591)
T COG1245 193 KFDEVVERLGLENVLDRDVSE-----LSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYV 266 (591)
T ss_pred cHHHHHHHhcchhhhhhhhhh-----cCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeE
Confidence 467899999999999887765 9999999999999999999999999999999999999999999999974 7788
Q ss_pred EEEEccCchhHHh-hcCeEEEEcC
Q 003389 397 IVALLQPAPETYD-LFDDIILLSE 419 (824)
Q Consensus 397 Iisi~q~~~e~~~-lfD~iilL~~ 419 (824)
+++-| +.. +.+ ++|-|-++..
T Consensus 267 iVVEH-DLa-vLD~lsD~vhI~YG 288 (591)
T COG1245 267 IVVEH-DLA-VLDYLSDFVHILYG 288 (591)
T ss_pred EEEec-hHH-HHHHhhheeEEEec
Confidence 88654 443 444 5777777653
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.1e-17 Score=179.09 Aligned_cols=172 Identities=20% Similarity=0.334 Sum_probs=121.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
..+...++|.|+||--++|+||||||||+|.++|+|+-+- |+|+-.. .+...+-|+||.+..- -.|.|
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv---------y~g~L~~--P~~~~mFYIPQRPYms-~gtlR 562 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV---------YNGLLSI--PRPNNIFYIPQRPYMS-GGTLR 562 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc---------cCCeeec--CCCcceEeccCCCccC-cCccc
Confidence 4478999999999999999999999999999999999864 4443222 2234599999987655 45778
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCc----c
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE----M 339 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~----~ 339 (824)
|.+-|.-.. .++.+ .+ .+|.|.. .+|+.+.|++.+..-.|-+ .
T Consensus 563 DQIIYPdS~----------e~~~~----kg-~~d~dL~------------------~iL~~v~L~~i~qr~~g~da~~dW 609 (728)
T KOG0064|consen 563 DQIIYPDSS----------EQMKR----KG-YTDQDLE------------------AILDIVHLEHILQREGGWDAVRDW 609 (728)
T ss_pred ceeecCCcH----------HHHHh----cC-CCHHHHH------------------HHHHHhhHHHHHHhccChhhhccH
Confidence 877663210 01111 11 1223333 3444444444333333211 1
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCc
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~ 404 (824)
-.-||||||||+.+||+...+|+.-+|||.||+.....+..|.+..+. .|.+.+-+.|+|+
T Consensus 610 kd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~----~gi~llsithrps 670 (728)
T KOG0064|consen 610 KDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD----AGISLLSITHRPS 670 (728)
T ss_pred HhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh----cCceEEEeecCcc
Confidence 124999999999999999999999999999999998888888777665 5788888788876
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.67 E-value=6e-17 Score=169.26 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=112.0
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEE-EEecCCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCA-YISQHDLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~-yv~Q~d~~~~~lT 261 (824)
...+.+|+++.+.+|++++|.||||+||||||+.++-. .+ ..++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~-----------~~----------la~~g~~vpa~~~~~~--- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI-----------VL----------MAQIGCFVPCDSADIP--- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH-----------HH----------HHHhCCCcCcccEEEe---
Confidence 34689999999999999999999999999999999721 00 01112 3433211110
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
..+.+++.+|+++.. .+
T Consensus 72 -------------------------------------------------------~~~~il~~~~l~d~~--------~~ 88 (222)
T cd03285 72 -------------------------------------------------------IVDCILARVGASDSQ--------LK 88 (222)
T ss_pred -------------------------------------------------------ccceeEeeeccccch--------hc
Confidence 012234455554322 24
Q ss_pred CCCHHHHHHHHHHHHH--HcCCcEeEEeCC---CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 342 GISGGQKKRVTTGEML--VGTANVLYMDEI---STGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 342 gLSGGqrqRvsIA~aL--v~~p~iLlLDEP---TsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
++|.|+++++.+++++ +.+|+++||||| |++||....... .++.+.+..+.++++++|. .++.++||++..
T Consensus 89 ~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~ 164 (222)
T cd03285 89 GVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPN 164 (222)
T ss_pred CcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCC
Confidence 6999999999999999 899999999999 999999887543 3344443347888888773 678999999999
Q ss_pred EcCCeEEEecC
Q 003389 417 LSEGQIVYQGP 427 (824)
Q Consensus 417 L~~G~iv~~G~ 427 (824)
+.+|++...++
T Consensus 165 i~~g~~~~~~~ 175 (222)
T cd03285 165 VKNLHVTALTD 175 (222)
T ss_pred eEEEEEEEEEe
Confidence 99999987764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.8e-16 Score=165.74 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHHHc----CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 342 GISGGQKKRVTTGEMLVG----TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~----~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||+||+++|++++. +|+++++||||+|||+.+...+.+.|+++.+ +.|+|++.|++. +.+.+|++++|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~--~~~~~d~~~~l 245 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQ--VAAMADNHFLV 245 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHH--HHHhcCcEEEE
Confidence 499999999999987654 9999999999999999999999999999864 678888888764 56899999999
Q ss_pred cCCe
Q 003389 418 SEGQ 421 (824)
Q Consensus 418 ~~G~ 421 (824)
.+|.
T Consensus 246 ~~~~ 249 (276)
T cd03241 246 EKEV 249 (276)
T ss_pred EEec
Confidence 8763
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-15 Score=172.70 Aligned_cols=119 Identities=25% Similarity=0.333 Sum_probs=95.8
Q ss_pred HHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 003389 321 VLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397 (824)
Q Consensus 321 iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p---~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvI 397 (824)
.|..+||.-. ..| +..-.|||||.|||-+|..|.... .+++|||||+||-.....++++.|.++.. .|-|||
T Consensus 805 tL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd-~GnTVi 879 (935)
T COG0178 805 TLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNTVI 879 (935)
T ss_pred HHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 4666777532 344 334569999999999999998877 89999999999999999999999999997 577888
Q ss_pred EEEccCchhHHhhcCeEEEEc------CCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHh
Q 003389 398 VALLQPAPETYDLFDDIILLS------EGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (824)
Q Consensus 398 isi~q~~~e~~~lfD~iilL~------~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 455 (824)
++-| .. ++...+|.|+=|- .|+||..|+++++.+ +| ..-++.||..+
T Consensus 880 VIEH-NL-dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~--------~~-~S~Tg~yLk~~ 932 (935)
T COG0178 880 VIEH-NL-DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK--------VK-ASYTGKYLKKY 932 (935)
T ss_pred EEec-cc-ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh--------Cc-cchhHHHHHHH
Confidence 7544 33 6888999999983 589999999999974 45 45566676654
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-16 Score=155.76 Aligned_cols=74 Identities=24% Similarity=0.352 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHHHc----CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 343 ISGGQKKRVTTGEMLVG----TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~----~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
||+||+||++++++|.. +|+++++|||++|+|+.....+.+.+.+..+. +.++++++|.+ +..+.+|+++.|.
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~--~~~~~~d~~~~l~ 154 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLP--ELAELADKLIHIK 154 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCH--HHHHhhhhEEEEE
Confidence 99999999999999986 78999999999999999999999999998765 77888877654 4567799999986
Q ss_pred C
Q 003389 419 E 419 (824)
Q Consensus 419 ~ 419 (824)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-16 Score=161.39 Aligned_cols=147 Identities=14% Similarity=0.099 Sum_probs=101.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
..+++|+++.. |++++|+||||||||||||+|+|... +...|.++.. + .+++|.+.+++.+||.
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~--------l~~~G~~v~a----~--~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI--------LAQAGAPVCA----S--SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH--------HHHcCCEEec----C--ccCcccceEEEeccch
Confidence 45888887665 79999999999999999999988542 2234554422 1 3667778889999999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
|++.++.... ..+ ...+..+|+.+++
T Consensus 78 d~l~~~~s~~-------------~~e-------------------------~~~~~~iL~~~~~---------------- 103 (199)
T cd03283 78 DDLRDGISYF-------------YAE-------------------------LRRLKEIVEKAKK---------------- 103 (199)
T ss_pred hccccccChH-------------HHH-------------------------HHHHHHHHHhccC----------------
Confidence 9997753110 000 0123445555542
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEEEccCchhHHhh--cCeEEEE
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-FLKQMVHILDVTMIVALLQPAPETYDL--FDDIILL 417 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~-~L~~l~~~~~~tvIisi~q~~~e~~~l--fD~iilL 417 (824)
.+|+++++|||++|||+.....+.. .++++.+ .+.++|+++|++. .+..+ .++|-.+
T Consensus 104 ---------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH~~~-~~~~~~~~~~v~~~ 163 (199)
T cd03283 104 ---------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDLE-LADLLDLDSAVRNY 163 (199)
T ss_pred ---------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcCcHH-HHHhhhcCCCeEEE
Confidence 6899999999999999999988764 6788765 4788888877654 33333 4444443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-15 Score=189.05 Aligned_cols=107 Identities=22% Similarity=0.323 Sum_probs=89.9
Q ss_pred HHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcC---CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 003389 320 YVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT---ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396 (824)
Q Consensus 320 ~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~---p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tv 396 (824)
..|..+||... ..| +....|||||.||+-+|..|..+ +.+++|||||+||++.....+++.|+++.. .|.|+
T Consensus 1681 ~~L~~vGLgYl---~LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~-~g~tv 1755 (1809)
T PRK00635 1681 QALIDNGLGYL---PLG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVS-LGHSV 1755 (1809)
T ss_pred HHHHHcCCCee---eCC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCeE
Confidence 45777888643 234 33456999999999999999876 789999999999999999999999999987 58898
Q ss_pred EEEEccCchhHHhhcCeEEEEc------CCeEEEecChhhHHH
Q 003389 397 IVALLQPAPETYDLFDDIILLS------EGQIVYQGPRDNVLE 433 (824)
Q Consensus 397 Iisi~q~~~e~~~lfD~iilL~------~G~iv~~G~~~~~~~ 433 (824)
|++-|++ ++...||.|+=|- .|+||+.|+++++.+
T Consensus 1756 ivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1756 IYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred EEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 8876654 6788899999994 589999999999864
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-15 Score=155.87 Aligned_cols=84 Identities=12% Similarity=0.092 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF-LKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~-L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
++++++ |+..+.+++.+|+++++||||+|||+.....+... ++.+.+ .+.++|+++|. .+..+.+|++..+..|+
T Consensus 92 ~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~-~~~~vi~~tH~--~~~~~~~~~~~~l~~~~ 167 (202)
T cd03243 92 FMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE-KGCRTLFATHF--HELADLPEQVPGVKNLH 167 (202)
T ss_pred HHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEECCh--HHHHHHhhcCCCeEEEE
Confidence 565555 46666778889999999999999999988887654 555554 47888887664 46778899999999999
Q ss_pred EEEecChhh
Q 003389 422 IVYQGPRDN 430 (824)
Q Consensus 422 iv~~G~~~~ 430 (824)
+...++..+
T Consensus 168 ~~~~~~~~~ 176 (202)
T cd03243 168 MEELITTGG 176 (202)
T ss_pred EEEEecCCe
Confidence 998886543
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.9e-15 Score=179.69 Aligned_cols=104 Identities=24% Similarity=0.351 Sum_probs=91.7
Q ss_pred HHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHHcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 003389 321 VLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397 (824)
Q Consensus 321 iL~~lgL~~~-~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvI 397 (824)
.|+.+||.+. .|+.+. .|||||||||.||++|..+| ++|+|||||+|||+.....+.+.|+++.+ .|.|||
T Consensus 472 ~L~~vGL~~l~l~r~~~-----~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVI 545 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLI 545 (943)
T ss_pred HhhccccCCCCCCCchh-----hCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 6888999865 677766 49999999999999999987 99999999999999999999999999975 588999
Q ss_pred EEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHH
Q 003389 398 VALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (824)
Q Consensus 398 isi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~ 432 (824)
++.|++. ++ ..||+|++| .+|++++.|+++++.
T Consensus 546 vVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 546 VVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred EEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 9877654 44 569999999 999999999998874
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=177.95 Aligned_cols=104 Identities=25% Similarity=0.354 Sum_probs=89.6
Q ss_pred HHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHHcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 003389 321 VLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397 (824)
Q Consensus 321 iL~~lgL~~~-~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvI 397 (824)
.|..+||... .++.+. .|||||+|||.||++|+.+| ++|+|||||+|||+.....+++.|+++.+ .|.|||
T Consensus 470 ~L~~vgL~~l~l~r~~~-----tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVI 543 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAG-----TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVI 543 (924)
T ss_pred hHhhccccccccCCCcC-----cCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 4677888754 465554 59999999999999999986 89999999999999999999999999976 488999
Q ss_pred EEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHH
Q 003389 398 VALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (824)
Q Consensus 398 isi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~ 432 (824)
++.|++. . ...||+|++| ++|+|++.|+++++.
T Consensus 544 vVeHd~~-~-i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 544 VVEHDEE-T-IRAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EEECCHH-H-HhhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 9877643 4 4589999999 899999999998864
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.1e-14 Score=152.36 Aligned_cols=77 Identities=19% Similarity=0.246 Sum_probs=62.2
Q ss_pred CCCCCHHHHHHHHHHHHHH---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh
Q 003389 340 RRGISGGQKKRVTTGEMLV---------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv---------~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l 410 (824)
..-+|+||||++++|++|+ .+|++++|||||++||+.....+.+.|+++. .++++.|+. +++.++
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~-----q~ii~~~~~-~~~~~~ 254 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV-----QTFVTTTDL-ADFDAL 254 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC-----CEEEEeCCc-hhccch
Confidence 3448999999999999985 7999999999999999999999999998752 344444443 355566
Q ss_pred c---CeEEEEcCCeE
Q 003389 411 F---DDIILLSEGQI 422 (824)
Q Consensus 411 f---D~iilL~~G~i 422 (824)
| ++++.+++|++
T Consensus 255 ~~~~~~i~~l~~g~i 269 (270)
T cd03242 255 WLRRAQIFRVDAGTL 269 (270)
T ss_pred hccCccEEEEeCcEE
Confidence 6 78999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-14 Score=157.72 Aligned_cols=214 Identities=21% Similarity=0.228 Sum_probs=135.9
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
++.++.|.|+.|-.|+-++|+||||-||||||+-|+.+--. .+..=+ +-|+.|+-..- +-|.
T Consensus 276 Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala-IPpnID----------------vLlCEQEvvad-~t~A 337 (807)
T KOG0066|consen 276 GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA-IPPNID----------------VLLCEQEVVAD-STSA 337 (807)
T ss_pred cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhcc-CCCCCc----------------eEeeeeeeeec-CcHH
Confidence 45688999999999999999999999999999999976321 001122 34444432211 1133
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHH-----HHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK-----AVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
-+++.-+- ..|..++.+-.+.+.+.. .-+.+..+.++ ..+........+...+|.-||.+.-....+
T Consensus 338 i~tvl~aD-----~kRl~lLeee~~L~~q~e-~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rP-- 409 (807)
T KOG0066|consen 338 IDTVLKAD-----KKRLALLEEEAKLMSQIE-EGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERP-- 409 (807)
T ss_pred HHHHHHhh-----HHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCC--
Confidence 33332221 112223322222211110 01111111111 111122223345677899999875443333
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
...+|||-|-||++||||...|.+|.|||||+.||.....-+-+.|+.+. +|.+|+.|. ..-+-..|.+||-|
T Consensus 410 --t~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk----KTLLIVSHD-QgFLD~VCtdIIHL 482 (807)
T KOG0066|consen 410 --TTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK----KTLLIVSHD-QGFLDSVCTDIIHL 482 (807)
T ss_pred --ccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh----heeEEEecc-cchHHHHHHHHhhh
Confidence 23599999999999999999999999999999999999999999999874 477776554 44667789999999
Q ss_pred cCCeEEE-ecChh
Q 003389 418 SEGQIVY-QGPRD 429 (824)
Q Consensus 418 ~~G~iv~-~G~~~ 429 (824)
++-++-| .|...
T Consensus 483 D~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 483 DNQKLHYYRGNYT 495 (807)
T ss_pred hhhhhhhhcchHH
Confidence 9887754 45543
|
|
| >PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-14 Score=117.97 Aligned_cols=57 Identities=56% Similarity=1.038 Sum_probs=55.3
Q ss_pred ccchhHHHHhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCccc
Q 003389 751 QPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVI 807 (824)
Q Consensus 751 ~~~~G~~~L~~~g~~~~~~~~w~~~~~L~~~~v~f~~l~~laL~~~~~~~~~~~~~~ 807 (824)
+.+.|.++|+++|++++.+|||+++|+|+||+++||+++++||+|++|++++++++|
T Consensus 9 ~~tlG~~vL~~rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~~k~~aiis 65 (65)
T PF08370_consen 9 NSTLGVAVLKSRGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLNPLGKSQAIIS 65 (65)
T ss_pred CCcHHHHHHHHcCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCcCC
Confidence 578999999999999999999999999999999999999999999999999999986
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain []. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.6e-14 Score=146.46 Aligned_cols=136 Identities=17% Similarity=0.173 Sum_probs=93.7
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
+..+.+|+++.+++|++++|+||||+|||||++++++..-- +++ | .|| +...+.+++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-----a~~---G------------~~v---pa~~~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-----AQI---G------------CFV---PAEYATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HHc---C------------CCc---chhhcCccC
Confidence 45699999999999999999999999999999999876411 100 1 122 233445566
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
.|+|.... +..+..+. ..+.
T Consensus 72 ~d~I~~~~-------------------------------------------------------~~~d~~~~-----~~S~ 91 (204)
T cd03282 72 FNRLLSRL-------------------------------------------------------SNDDSMER-----NLST 91 (204)
T ss_pred hhheeEec-------------------------------------------------------CCccccch-----hhhH
Confidence 66663321 11111111 1234
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEEEccC
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQIC-KFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~-~~L~~l~~~~~~tvIisi~q~ 403 (824)
+|+|++|+ ..+..++.+|++++||||++|+|+.....+. ..++.+.+ .+.++|+++|.+
T Consensus 92 fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~~~~~i~~TH~~ 151 (204)
T cd03282 92 FASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK-KESTVFFATHFR 151 (204)
T ss_pred HHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChH
Confidence 89898865 5556678999999999999999998766654 45666665 488888887643
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.4e-14 Score=145.96 Aligned_cols=156 Identities=13% Similarity=0.117 Sum_probs=104.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
..+.+|+++.+++ ++++|+|||||||||||+++++..-. |+ .|..+.. .+..++++.| +++.+++.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~vp~--~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFVPA--SKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCeecc--ccceecceee---EeccCCch
Confidence 4589999999988 99999999999999999999875321 11 1211111 1345677755 45677777
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
|++..+.
T Consensus 84 ~~ls~g~------------------------------------------------------------------------- 90 (216)
T cd03284 84 DDLAGGR------------------------------------------------------------------------- 90 (216)
T ss_pred hhhccCc-------------------------------------------------------------------------
Confidence 7775431
Q ss_pred CH--HHHHHHHHHHHHHcCCcEeEEeCC---CCCCCHHHH-HHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 344 SG--GQKKRVTTGEMLVGTANVLYMDEI---STGLDSSTT-FQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 344 SG--GqrqRvsIA~aLv~~p~iLlLDEP---TsGLDs~t~-~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
|. .|+++++-+...+.+|++++|||| |+++|.... ..+++. +.+..+.++|+++|.+ ++.+++|++.-+
T Consensus 91 s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~---l~~~~~~~vi~~TH~~--~l~~l~~~~~~v 165 (216)
T cd03284 91 STFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEY---LHEKIGAKTLFATHYH--ELTELEGKLPRV 165 (216)
T ss_pred chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHH---HHhccCCcEEEEeCcH--HHHHHhhcCCCe
Confidence 11 122233333333579999999999 888887652 333444 4332377888887763 778889988888
Q ss_pred cCCeEEEecChhhH
Q 003389 418 SEGQIVYQGPRDNV 431 (824)
Q Consensus 418 ~~G~iv~~G~~~~~ 431 (824)
.+|++...+..+++
T Consensus 166 ~~~~~~~~~~~~~l 179 (216)
T cd03284 166 KNFHVAVKEKGGGV 179 (216)
T ss_pred EEEEEEEEeeCCeE
Confidence 88998877766554
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-13 Score=149.41 Aligned_cols=182 Identities=31% Similarity=0.377 Sum_probs=131.0
Q ss_pred cccccccccceeeEEeCC-----eEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCC
Q 003389 180 KKRSVRILKDVSGIVKPS-----RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHD 254 (824)
Q Consensus 180 ~~~~~~IL~~vs~~I~~G-----e~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d 254 (824)
+.+.+.-+.+..+.|+.| |++..+|.||.|||||+++|||+++|+ ..|+| +.=.++|=+|.-
T Consensus 345 Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd--~~~e~-----------p~lnVSykpqki 411 (592)
T KOG0063|consen 345 YPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPD--EGGEI-----------PVLNVSYKPQKI 411 (592)
T ss_pred cCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCC--ccCcc-----------cccceecccccc
Confidence 334445677888888877 578999999999999999999999987 23333 223466667764
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
.--.+-|||+.+.--. + +++| +.+.+.++++-|.+++..|.-
T Consensus 412 spK~~~tvR~ll~~kI----------------r-------------~ay~---------~pqF~~dvmkpL~ie~i~dqe 453 (592)
T KOG0063|consen 412 SPKREGTVRQLLHTKI----------------R-------------DAYM---------HPQFVNDVMKPLQIENIIDQE 453 (592)
T ss_pred CccccchHHHHHHHHh----------------H-------------hhhc---------CHHHHHhhhhhhhHHHHHhHH
Confidence 4445668888763211 0 0111 112345567777777777766
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
|- +|||||.|||++|..|=.++++++.|||++-||+..+...-+.+++..-..++|..++-|.-.-.+ -++||+
T Consensus 454 vq-----~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaT-Yladrv 527 (592)
T KOG0063|consen 454 VQ-----GLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMAT-YLADRV 527 (592)
T ss_pred hh-----cCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH-hhccee
Confidence 54 599999999999999999999999999999999999999888888875445677777655433333 368998
Q ss_pred EEEc
Q 003389 415 ILLS 418 (824)
Q Consensus 415 ilL~ 418 (824)
++..
T Consensus 528 ivf~ 531 (592)
T KOG0063|consen 528 IVFE 531 (592)
T ss_pred EEEe
Confidence 8764
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-13 Score=148.69 Aligned_cols=140 Identities=22% Similarity=0.255 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCCCCHHHHHHHhhhhc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGEMTVRETLDFSGRCL 273 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~ 273 (824)
.-++|+||||||||||+++|+|.++++ +|+|.++|+++..... .+.+++++|++ +...++|.++..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~------ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP------ 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch------
Confidence 578999999999999999999999987 9999999998753221 13456777754 223344443321
Q ss_pred CCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 003389 274 GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353 (824)
Q Consensus 274 ~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsI 353 (824)
|.....
T Consensus 182 --------------------------------------------------------------------------k~~~~~ 187 (270)
T TIGR02858 182 --------------------------------------------------------------------------KAEGMM 187 (270)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 000012
Q ss_pred HHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh-H-----------HhhcCeEEEEcCCe
Q 003389 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE-T-----------YDLFDDIILLSEGQ 421 (824)
Q Consensus 354 A~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e-~-----------~~lfD~iilL~~G~ 421 (824)
..+...+|+++++|||++ ...+...++.+. .|.++|+++|.+..+ + ...|||+++|++|+
T Consensus 188 ~~i~~~~P~villDE~~~------~e~~~~l~~~~~--~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~ 259 (270)
T TIGR02858 188 MLIRSMSPDVIVVDEIGR------EEDVEALLEALH--AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK 259 (270)
T ss_pred HHHHhCCCCEEEEeCCCc------HHHHHHHHHHHh--CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC
Confidence 222235899999999974 233444444443 488999999865432 2 26699999999887
Q ss_pred EEEecChhhH
Q 003389 422 IVYQGPRDNV 431 (824)
Q Consensus 422 iv~~G~~~~~ 431 (824)
..|.++++
T Consensus 260 --~~g~~~~i 267 (270)
T TIGR02858 260 --GPGTVEAV 267 (270)
T ss_pred --CCCceeec
Confidence 55665544
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.4e-12 Score=132.23 Aligned_cols=229 Identities=14% Similarity=0.033 Sum_probs=161.0
Q ss_pred HHHHHHhhChhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhh-----HHHHHHHHHHHHHhhHHHHHHHhhhh-h
Q 003389 530 REWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRY-----FGALFFSLLNIMFNGFAENAMTVLRL-P 603 (824)
Q Consensus 530 R~~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~~-----~g~lFf~~~~~~f~~~~~~~~~~~~~-~ 603 (824)
||++...||+..+..-+++-+++.++.+.+|-..-.++. ..++.++ .|.+.++++..+.... .....++. .
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~-~~~g~~y~~fl~~G~~~~~~~~~~~~~~--~~~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPM-IFGGVDYMTYLVPGIVAMTVFNMSFFSG--ISVIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccccccc-ccCCCcHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHhC
Confidence 788889999999999889988888888888754311111 0111222 2334333333222111 11111111 2
Q ss_pred HHHHHhhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHccCch
Q 003389 604 IFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTE 683 (824)
Q Consensus 604 vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl~~~iaa~~~~~ 683 (824)
++.| -...=.+.+.|.+++.+..++..++..+++.++.|++.++++ ..++..++..++...+..+++.++++..++.
T Consensus 78 ~~~~-~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~ 154 (236)
T TIGR01247 78 FLKE-ILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSM 154 (236)
T ss_pred HHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 2221 111223578999999999999999999999999998877654 3456566666677778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhhcCCcccCCCCCCCCcccchhHHHHhhcC
Q 003389 684 VISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRG 763 (824)
Q Consensus 684 ~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf~~~~~~~~~~~~~~~~~~~G~~~L~~~g 763 (824)
..++.+.+++..+++.+||.+.|.+.+|+|++|+.+++|++|+.+++-..-. +.. +
T Consensus 155 ~~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~-~~~-----------------------~ 210 (236)
T TIGR01247 155 EGFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLA-GVS-----------------------P 210 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHh-CCC-----------------------c
Confidence 9999999999999999999999999999999999999999999998553221 110 0
Q ss_pred CccCCcchhHHHHHHHHHHHHHHHHHHHH
Q 003389 764 FSTESNWYWIGVGALTGYSFLFNFLFIAA 792 (824)
Q Consensus 764 ~~~~~~~~w~~~~~L~~~~v~f~~l~~la 792 (824)
. ..+|.++++|+.+.+++.+++...
T Consensus 211 ~----~~~~~~~~~l~~~~~~~~~l~~~~ 235 (236)
T TIGR01247 211 T----FPLEQDLLVLTLLAVIFVGIAAVE 235 (236)
T ss_pred c----cchHHHHHHHHHHHHHHHHHHHHh
Confidence 0 124678899999998888876643
|
This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.5e-11 Score=133.96 Aligned_cols=78 Identities=23% Similarity=0.337 Sum_probs=63.4
Q ss_pred CCCCCHHHHHHHHHHHHHH---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh
Q 003389 340 RRGISGGQKKRVTTGEMLV---------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv---------~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l 410 (824)
...+|+||+|++.+|..|+ ++|++|+||||+++||+..+..+++.|.++ +..++++.|++. .+...
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~-~~~~~ 345 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLE-DLADL 345 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChh-hhhhh
Confidence 4569999999999999885 799999999999999999999999998764 346677766543 34444
Q ss_pred c--CeEEEEcCCeE
Q 003389 411 F--DDIILLSEGQI 422 (824)
Q Consensus 411 f--D~iilL~~G~i 422 (824)
+ ++++.+.+|++
T Consensus 346 ~~~~~i~~v~~G~i 359 (361)
T PRK00064 346 LENAKIFHVEQGKI 359 (361)
T ss_pred hccCcEEEEeCCEE
Confidence 3 57999999987
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-12 Score=132.98 Aligned_cols=80 Identities=13% Similarity=0.099 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQIC-KFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~-~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.+..+.++|+++|++ ++.+++|+---+.++
T Consensus 61 ~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~~ 137 (185)
T smart00534 61 TFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRNL 137 (185)
T ss_pred HHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceEE
Confidence 47877776333332 23499999999999999999888775 455666653478888888775 577778753334444
Q ss_pred eEEE
Q 003389 421 QIVY 424 (824)
Q Consensus 421 ~iv~ 424 (824)
++..
T Consensus 138 ~~~~ 141 (185)
T smart00534 138 HMSA 141 (185)
T ss_pred EEEE
Confidence 4433
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-12 Score=119.62 Aligned_cols=74 Identities=23% Similarity=0.163 Sum_probs=61.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
..+|+++++.+++|++++|+||||||||||+++|. +|+|.++|.++.... ..+..+|++|+ ....
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~~ 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL---GLEI 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh---cchh
Confidence 45899999999999999999999999999999985 688999999875433 23556777776 4445
Q ss_pred CHHHHHHHh
Q 003389 261 TVRETLDFS 269 (824)
Q Consensus 261 TV~E~L~f~ 269 (824)
||+|||.+.
T Consensus 70 ti~~Ni~~~ 78 (107)
T cd00820 70 RLRLNIFLI 78 (107)
T ss_pred hHHhhceee
Confidence 999999873
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-10 Score=120.79 Aligned_cols=148 Identities=19% Similarity=0.163 Sum_probs=121.3
Q ss_pred chHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHccCchHHHHHHHHHHH
Q 003389 615 PSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFIL 694 (824)
Q Consensus 615 ~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl~~~iaa~~~~~~~A~~~~~~~~ 694 (824)
+.+.+++++.+..+++.++++++...+.|++.|+++. +++.+++.+++...+..+++.+++++.++.. ..++...+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~--~~~~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVG--RFLALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcch--HHHHHHHH
Confidence 4567899999999999999999999999999999874 5777888888888999999999999998764 34444455
Q ss_pred HHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhhcCCcccCCCCCCCCcccchhHHHHhhcCCccCCcchhHH
Q 003389 695 LIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIG 774 (824)
Q Consensus 695 ~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf~~~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~ 774 (824)
.+.++++|.+.|.+.+|.|++|+.|++|++|+.+++-.+.+.+. + ...|.+
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~-~----------------------------~~~~~~ 184 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN-D----------------------------GTLWQA 184 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc-H----------------------------HHHHHH
Confidence 56667899899999999999999999999999999876554321 1 124778
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 003389 775 VGALTGYSFLFNFLFIAALAY 795 (824)
Q Consensus 775 ~~~L~~~~v~f~~l~~laL~~ 795 (824)
+++|++|.+++.++++...+.
T Consensus 185 ~~~L~~~~~v~~~la~~~~~~ 205 (208)
T TIGR03062 185 VAVLLLILVVFLALSLLSARR 205 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 899999999888888777654
|
This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057. |
| >TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-09 Score=115.41 Aligned_cols=216 Identities=12% Similarity=0.112 Sum_probs=139.7
Q ss_pred hhChhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchh-hHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHhhcCc-
Q 003389 536 KRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSR-YFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLF- 613 (824)
Q Consensus 536 ~R~~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~-~~g~lFf~~~~~~f~~~~~~~~~~~~~~vf~ker~~~~- 613 (824)
+||+...++-+.+-+++-++.+.+|-+. ...+ +.+. ..|.+-+..+. .+....+.. +.+||+.+.
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~------i~~er~~G~l 68 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGS-VTHN---RGATFIPVLMALAAIS---TAFTGQAIA------VARDRRYGAL 68 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCc-cCCc---chhHhhHHHHHHHHHH---HHHHHHHHH------HHHHHHhCHH
Confidence 6899999988888888877777777542 1111 1111 22322222211 111111111 234444443
Q ss_pred -------cchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHccC---ch
Q 003389 614 -------YPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGR---TE 683 (824)
Q Consensus 614 -------Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl~~~iaa~~~---~~ 683 (824)
.+++.|.+++.+..++..++..+++. +++++.|++.....+ ..++.+.+....+.+++.+++++++ +.
T Consensus 69 ~rl~~~P~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 146 (232)
T TIGR00025 69 KRLGATPLPRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQA 146 (232)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 36789999998888888877765554 557788998764433 3344444455555666777777764 44
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhhcCCcccCCCCCCCCcccchhHHHHhhcC
Q 003389 684 VISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRG 763 (824)
Q Consensus 684 ~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf~~~~~~~~~~~~~~~~~~~G~~~L~~~g 763 (824)
+.+..++.+..++++++||++.|.+.+|.|++|+.+++|++|+.+++-.--..+..
T Consensus 147 ~~~~~i~~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~~~------------------------ 202 (232)
T TIGR00025 147 EIVLAVANLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVSVD------------------------ 202 (232)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCCCC------------------------
Confidence 55578888889999999999999999999999999999999999986532111100
Q ss_pred CccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 003389 764 FSTESNWYWIGVGALTGYSFLFNFLFIAALA 794 (824)
Q Consensus 764 ~~~~~~~~w~~~~~L~~~~v~f~~l~~laL~ 794 (824)
....|.++++++++.+++..++....+
T Consensus 203 ----~~~~~~~~~~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 203 ----TFGAVRDLVVVLAFWVALAALAAIRLR 229 (232)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112466778888888887776665543
|
This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance. |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.5e-11 Score=124.37 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHHh-C-CcEEEEEEccC
Q 003389 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQI-CKFLKQMVHI-L-DVTMIVALLQP 403 (824)
Q Consensus 346 GqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I-~~~L~~l~~~-~-~~tvIisi~q~ 403 (824)
-|.||++++++++.+|+++++|||++|+|+.....+ ...++++.+. . +.++|+++|.+
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 467999999999999999999999999999765555 4678887653 1 24677776654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR01291 nodJ ABC-2 type transporter, NodJ family | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-09 Score=113.98 Aligned_cols=231 Identities=17% Similarity=0.085 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHhhC-hhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhhHHHHHHHHHHH--HHhhHHHHHHHhh
Q 003389 524 FRACFAREWLLMKRN-SFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNI--MFNGFAENAMTVL 600 (824)
Q Consensus 524 ~~~~~~R~~~~~~R~-~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~~~g~lFf~~~~~--~f~~~~~~~~~~~ 600 (824)
.....+|+++..+|+ +.....-+++-++.-++.|.+|-... + .. ++..|...+.-+++.+ +++++.+..
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~-~--~~-~g~~y~~f~~pg~l~~~~~~~~~~~~~---- 78 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMV-G--SV-DGVSYAAFLAAGMVATSAMTASTFETI---- 78 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhc-c--cc-CCCCHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 445669999999999 88888888888888888888864321 1 11 1233433222222211 223321110
Q ss_pred hhhHHHHHhhcCcc--------chHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHH
Q 003389 601 RLPIFYKQRDHLFY--------PSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPL 672 (824)
Q Consensus 601 ~~~vf~ker~~~~Y--------~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl 672 (824)
..++.++|..+.+ +++.+.+++.+.+.-..++..++...+. +..|..+. ...+..++++++...+..++
T Consensus 79 -~~~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~-~~~g~~~~-~~~l~~~~~~ll~~l~~~~l 155 (253)
T TIGR01291 79 -YATFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVT-ATLGYIEW-WSLIYILPVIALTGLAFASL 155 (253)
T ss_pred -HHHHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhchh-hhHHHHHHHHHHHHHHHHHH
Confidence 1345666665553 6788999999988777777666554444 34455443 33444555666677777789
Q ss_pred HHHHHHccCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhhcCCcccCCCCCCCCccc
Q 003389 673 YRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQP 752 (824)
Q Consensus 673 ~~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf~~~~~~~~~~~~~~~~~ 752 (824)
+.++++++++...+..+..++..+++.+||.+.|.+.+|.|++|+.+++|++|+.+++=.- +.+..+
T Consensus 156 g~~~a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~-~~g~~~------------ 222 (253)
T TIGR01291 156 SMLVAALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPV-MLGGPG------------ 222 (253)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHH-HhCCCc------------
Confidence 9999999999999999999999999999999999999999999999999999999985433 211100
Q ss_pred chhHHHHhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 003389 753 TIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALA 794 (824)
Q Consensus 753 ~~G~~~L~~~g~~~~~~~~w~~~~~L~~~~v~f~~l~~laL~ 794 (824)
...|.++++++++.+++..++....+
T Consensus 223 ----------------~~~~~~~~~l~~~~vv~~~la~~~fr 248 (253)
T TIGR01291 223 ----------------TQVGLHLGALCLYAVVPFFISAALLR 248 (253)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01245677788887777766554443
|
Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins. |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-11 Score=127.44 Aligned_cols=73 Identities=25% Similarity=0.433 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHHH----HcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 342 GISGGQKKRVTTGEML----VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 342 gLSGGqrqRvsIA~aL----v~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.+|||||.+++||-.| ..+.++++||||.++||...+..+.+.|+++.+ +.=+|+++|+ +.+++.+|+.+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~Q~ii~Th~--~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QSQFIITTHN--PEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TSEEEEE-S---HHHHTT-SEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccc--ccccccccccccc
Confidence 4999999999999554 357899999999999999999999999999874 3456666565 4689999998876
Q ss_pred c
Q 003389 418 S 418 (824)
Q Consensus 418 ~ 418 (824)
.
T Consensus 212 ~ 212 (220)
T PF02463_consen 212 T 212 (220)
T ss_dssp E
T ss_pred c
Confidence 3
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.6e-11 Score=145.05 Aligned_cols=62 Identities=13% Similarity=0.215 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEEEccCc
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQIC-KFLKQMVHILDVTMIVALLQPA 404 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~-~~L~~l~~~~~~tvIisi~q~~ 404 (824)
..+|+|+++++.|.+.+ .+|+++++|||++|+|+.....+. ..|+.+.+ .+.++|+++|.+.
T Consensus 384 StfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~viitTH~~e 446 (771)
T TIGR01069 384 STFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVLITTHYKE 446 (771)
T ss_pred hHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHH
Confidence 35999999999998877 789999999999999999999994 67777765 5888888877654
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-09 Score=115.54 Aligned_cols=207 Identities=14% Similarity=0.087 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhhhccc-cCCCCCc-ccchhh-----HHHHHHHHHHHHHhhHH
Q 003389 521 WELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRT-EMSVGDM-NGGSRY-----FGALFFSLLNIMFNGFA 593 (824)
Q Consensus 521 ~~q~~~~~~R~~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~-~~~~~~~-~~~~~~-----~g~lFf~~~~~~f~~~~ 593 (824)
|..+.++++||++..+||+..+..-+++-+++-++.+.+|-.. +.+.... .+...+ .|.+-++++...+++-
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~~- 79 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQSS- 79 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhh-
Confidence 3578899999999999999999999999999999999888432 1100000 011112 2333333322222111
Q ss_pred HHHHHhh-hhhHHHHHhhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHH
Q 003389 594 ENAMTVL-RLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPL 672 (824)
Q Consensus 594 ~~~~~~~-~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl 672 (824)
.....+ ++..+.+=+. .-.+.+.+.+++.+...-..++..++..++.+ ..|.++....++.....+++...+..++
T Consensus 80 -~~~~~~r~~g~~~~l~~-~p~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~-~~g~~~~~~~~l~~~~~~~l~~~~~~~l 156 (253)
T TIGR03861 80 -LSMVYDREMGSMRVLLT-SPLPRPFLLFCKLLASALISLLQVYAFLAIAA-LVGVQPPVWGYVSVLPALVLVAFMLGAL 156 (253)
T ss_pred -hHhHHhHhcCHHHHHhh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 011111 1111111111 12477889999999998777777665555443 3377666444554455556666777899
Q ss_pred HHHHHHccCchHHHHHHHHHHHHHHHHhhccccCCCCc---hhhhHhhhhhCHHHHHHHHHH
Q 003389 673 YRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDI---EPFLRWGYYISPMMYGQTSLL 731 (824)
Q Consensus 673 ~~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~i---p~w~~W~~~iSp~~Ya~~al~ 731 (824)
+.++++++++...+..+.++++.+++.+||.+.|.+.+ |.|++|+.++||+.|..|++=
T Consensus 157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R 218 (253)
T TIGR03861 157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVR 218 (253)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHH
Confidence 99999999999888888889999999999999998766 889999999999999998753
|
Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis. |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.4e-10 Score=125.45 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHHH---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 342 GISGGQKKRVTTGEMLV---------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv---------~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
-+|+||+|++.+|..|+ .+|++++||||+++||......+.+.|.... .++ ++..+ .-+.+|
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~----q~~-it~t~----~~~~~~ 333 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP----QAI-VAGTE----APPGAA 333 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC----cEE-EEcCC----CCCCCc
Confidence 48999999999999998 8999999999999999999999998886532 233 33322 345699
Q ss_pred eEEEEcCCeEEEecC
Q 003389 413 DIILLSEGQIVYQGP 427 (824)
Q Consensus 413 ~iilL~~G~iv~~G~ 427 (824)
+++.+.+|++.-..|
T Consensus 334 ~~~~~~~~~~~~~~~ 348 (349)
T PRK14079 334 LTLRIEAGVFTPEAP 348 (349)
T ss_pred eEEEEeccEecCCCC
Confidence 999999998754433
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.3e-10 Score=127.44 Aligned_cols=175 Identities=22% Similarity=0.280 Sum_probs=109.0
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCccc---CCC--------CCCceEEEEe
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL---NEF--------VPQRTCAYIS 251 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~---~~~--------~~~~~i~yv~ 251 (824)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.- .++ ..++.+.++.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~ 220 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVA 220 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEE
Confidence 45689999 999999999999999999999999999999886 89999965433 322 1246788887
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc
Q 003389 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (824)
Q Consensus 252 Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (824)
+-|.-. -.|....+.+. + ..++ +..-|-
T Consensus 221 ~~~~~~---~~r~~~~~~a~--------------~------------------------------iAEy-fr~~g~---- 248 (438)
T PRK07721 221 TSDQPA---LMRIKGAYTAT--------------A------------------------------IAEY-FRDQGL---- 248 (438)
T ss_pred CCCCCH---HHHHHHHHHHH--------------H------------------------------HHHH-HHHCCC----
Confidence 643211 01111111110 0 0111 111121
Q ss_pred cccc-cCccCCCCCHHHHHHHHHH-HHHHcCCcEeEEeCC--CCCCCHHHHHHHHHHHHHHHH-hCCc-----EEEEEEc
Q 003389 332 DTMV-GDEMRRGISGGQKKRVTTG-EMLVGTANVLYMDEI--STGLDSSTTFQICKFLKQMVH-ILDV-----TMIVALL 401 (824)
Q Consensus 332 dt~v-g~~~~rgLSGGqrqRvsIA-~aLv~~p~iLlLDEP--TsGLDs~t~~~I~~~L~~l~~-~~~~-----tvIisi~ 401 (824)
|..+ -|. ++ |.+=| |.+. +.+.|| |+|+|+.....+.+.++++.. ..|. ||++..|
T Consensus 249 ~Vll~~Ds----lt-----r~A~A~rEis-----l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~h 314 (438)
T PRK07721 249 NVMLMMDS----VT-----RVAMAQREIG-----LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGD 314 (438)
T ss_pred cEEEEEeC----hH-----HHHHHHHHHH-----HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECC
Confidence 1111 010 11 11111 1111 122343 679999999999999999874 2353 6666544
Q ss_pred cCchhHHhhcCeEEEEcCCeEEEecChhh
Q 003389 402 QPAPETYDLFDDIILLSEGQIVYQGPRDN 430 (824)
Q Consensus 402 q~~~e~~~lfD~iilL~~G~iv~~G~~~~ 430 (824)
+ .++ .+||++..+.+|+++..+...+
T Consensus 315 d-m~e--~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 315 D-MNE--PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred C-CCc--hhhhhEEEecCEEEEEeccHHH
Confidence 3 333 6799999999999999998754
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-10 Score=120.54 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHcCCcEeEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 003389 346 GQKKRVTTGEMLVGTANVLYMDEIS-----TGLDSSTTFQICKFLKQMVH 390 (824)
Q Consensus 346 GqrqRvsIA~aLv~~p~iLlLDEPT-----sGLDs~t~~~I~~~L~~l~~ 390 (824)
-|++++.||++++.+|+++++|||| +|||+.+...+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999875
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.5e-10 Score=117.50 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=39.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhc-CcCCCCCCcceEe
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG-KLGKDLRASGKIT 232 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG-~l~~~~~~sG~I~ 232 (824)
..+.+|+++.+++|++++|.||||+||||||+++++ .+.+. .|...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~---~G~~v 64 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQ---IGSFV 64 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHh---CCCEE
Confidence 468999999999999999999999999999999999 44443 66543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.7e-10 Score=124.81 Aligned_cols=96 Identities=25% Similarity=0.235 Sum_probs=77.5
Q ss_pred hHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 003389 317 VTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396 (824)
Q Consensus 317 ~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tv 396 (824)
..+++++.+.|++..|.-+.. |||||-||.+||.+.+..+++.++|||++-||...+..-...+|.+.. .+.-+
T Consensus 193 ~~~~~~~~~~L~~~~~re~~~-----lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~-p~~Yi 266 (592)
T KOG0063|consen 193 NKEEVCDQLDLNNLLDREVEQ-----LSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLIN-PDRYI 266 (592)
T ss_pred cHHHHHHHHHHhhHHHhhhhh-----cccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhC-CCCeE
Confidence 345677888888888777664 999999999999999999999999999999999999999999999986 35666
Q ss_pred EEEEccCchhHHhhcCeEEEEcC
Q 003389 397 IVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 397 Iisi~q~~~e~~~lfD~iilL~~ 419 (824)
|++-|..+ -.--+.|-+.+|..
T Consensus 267 IVVEHDLs-VLDylSDFiCcLYG 288 (592)
T KOG0063|consen 267 IVVEHDLS-VLDYLSDFICCLYG 288 (592)
T ss_pred EEEEeech-HHHhhhcceeEEec
Confidence 66555443 33335677777763
|
|
| >PRK15066 inner membrane transport permease; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.9e-08 Score=102.79 Aligned_cols=237 Identities=16% Similarity=0.188 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHHHHHhhhccccCCCCCcccchhhH-----HHHHHHHHHHHHhhHH
Q 003389 520 KWELFRACFAREWLLMKRNSFV-YIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYF-----GALFFSLLNIMFNGFA 593 (824)
Q Consensus 520 ~~~q~~~~~~R~~~~~~R~~~~-~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~~~-----g~lFf~~~~~~f~~~~ 593 (824)
.|.-++++.+|+++...||+.. ...-+++.++..++.|.++-. +.+. . ++..|. |.+-+..+. +++.
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~-~~~~--~-~~~~y~~fl~pGll~~~~~~---~~~~ 78 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGS-RIGE--M-GGFSYMQFIVPGLIMMSVIT---NSYS 78 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc-ccCC--C-CCCcHHHHHHHHHHHHHHHH---HHHH
Confidence 3677889999999999999754 333445555666666665421 1111 0 111222 333222222 2222
Q ss_pred HHHHHhhhhhHHHHH---hhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHH
Q 003389 594 ENAMTVLRLPIFYKQ---RDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSL 670 (824)
Q Consensus 594 ~~~~~~~~~~vf~ke---r~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~ 670 (824)
..+..+.+.. +.|. -...=.+.+.+.+++.+...-..++.+++..++.+...|..+.. ...++..+++...+..
T Consensus 79 ~~~~~i~~~~-~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~~--~~~~l~~~ll~~~~f~ 155 (257)
T PRK15066 79 NVASSFFSAK-FQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVHH--WGIVLLTVLLTAILFS 155 (257)
T ss_pred HHHHHHHHHH-HhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhH--HHHHHHHHHHHHHHHH
Confidence 2222222211 1111 11113477888888888776666666655555555555666542 2223333333333333
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhhcCCcccCCCCCCCCc
Q 003389 671 PLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSIN 750 (824)
Q Consensus 671 sl~~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf~~~~~~~~~~~~~~~ 750 (824)
..+.+++++.++...+..+.++++.+++.+||.+.|.+++|.|++|+.++||++|..|++=.. +.+
T Consensus 156 ~~gl~~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~-~~g------------- 221 (257)
T PRK15066 156 LGGLINAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYG-FLG------------- 221 (257)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHH-HcC-------------
Confidence 447788888888888888899999999999999999999999999999999999999985422 111
Q ss_pred ccchhHHHHhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 003389 751 QPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAY 795 (824)
Q Consensus 751 ~~~~G~~~L~~~g~~~~~~~~w~~~~~L~~~~v~f~~l~~laL~~ 795 (824)
.. ....|.++++++++.+++..++....+.
T Consensus 222 -------------~~--~~~~~~~l~~l~~~~~v~~~la~~~~~r 251 (257)
T PRK15066 222 -------------IS--DVPLWLAFAVLLVFIVVLYLLAWYLLER 251 (257)
T ss_pred -------------CC--CccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 0113778888888888877777666543
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-10 Score=121.79 Aligned_cols=86 Identities=14% Similarity=0.173 Sum_probs=64.6
Q ss_pred ccccccccCccCCCCCHHH--------HHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHH-HHHHHHHHHHhCCcEEEEE
Q 003389 329 ICADTMVGDEMRRGISGGQ--------KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQ-ICKFLKQMVHILDVTMIVA 399 (824)
Q Consensus 329 ~~~dt~vg~~~~rgLSGGq--------rqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~-I~~~L~~l~~~~~~tvIis 399 (824)
..+++.+|. ..+.+|||+ +||+++|+++..+++|.+| ||+.+|+.+... ++ +..+.. .+.|.|+.
T Consensus 117 ~a~~ev~~~-~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~-~~~~~ivl 190 (249)
T cd01128 117 RAYNTVVPP-SGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKG-TGNMELVL 190 (249)
T ss_pred hhhhhcccc-CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhc-CCCcEEEE
Confidence 344555553 445589999 9999999999999999999 999999755554 54 444443 35677776
Q ss_pred EccCchhHHhhcCeEEEEcCCeE
Q 003389 400 LLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 400 i~q~~~e~~~lfD~iilL~~G~i 422 (824)
.|.. .....+|.|.+|..|++
T Consensus 191 s~~l--a~~~~~paI~vl~s~sr 211 (249)
T cd01128 191 DRRL--AERRIFPAIDILKSGTR 211 (249)
T ss_pred chHH--hhCCCCCeEEEcCCCCc
Confidence 6643 35678999999999987
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-09 Score=114.77 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHH----cCCcEeEEeCCCCCC----CHHHHHHHHHHHHHHHHhCCcEEEEEEccCch------hHH
Q 003389 343 ISGGQKKRVTTGEMLV----GTANVLYMDEISTGL----DSSTTFQICKFLKQMVHILDVTMIVALLQPAP------ETY 408 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv----~~p~iLlLDEPTsGL----Ds~t~~~I~~~L~~l~~~~~~tvIisi~q~~~------e~~ 408 (824)
+|+++.++-.+.+.+- .+|+++++||||+++ |+....++.+.++++++. +.|++++.++... ...
T Consensus 96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~-g~tvi~t~~~~~~~~~~~~~~~ 174 (230)
T PRK08533 96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSL-NKVIILTANPKELDESVLTILR 174 (230)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhC-CCEEEEEecccccccccceeEE
Confidence 6777666655554443 369999999999999 778888899999998764 7777776443321 123
Q ss_pred hhcCeEEEEc
Q 003389 409 DLFDDIILLS 418 (824)
Q Consensus 409 ~lfD~iilL~ 418 (824)
.++|-|+.|+
T Consensus 175 ~~~DgvI~L~ 184 (230)
T PRK08533 175 TAATMLIRLE 184 (230)
T ss_pred EeeeEEEEEE
Confidence 4578888886
|
|
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.2e-09 Score=119.09 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHHHHHHHc---------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 341 RGISGGQKKRVTTGEMLVG---------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~---------~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
.-+|.||+|++.||..|+. +|+||+||||+++||+..+..+++.|++. +..++++.|++
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~ 341 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISL 341 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecCh
Confidence 3589999999999999999 99999999999999999999999999763 56788887764
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.00 E-value=4e-09 Score=106.45 Aligned_cols=77 Identities=19% Similarity=0.195 Sum_probs=60.6
Q ss_pred CCCCHHHHH------HHHHHHHHHcCCcEeEEeCCCCCCC---HHHHHHHHHHHHHHHHhCCcEEEEEEccCch------
Q 003389 341 RGISGGQKK------RVTTGEMLVGTANVLYMDEISTGLD---SSTTFQICKFLKQMVHILDVTMIVALLQPAP------ 405 (824)
Q Consensus 341 rgLSGGqrq------RvsIA~aLv~~p~iLlLDEPTsGLD---s~t~~~I~~~L~~l~~~~~~tvIisi~q~~~------ 405 (824)
..+|+||+| +.....+...+|+++++|||++.+| ......+.+.++.+.+ .|.|++++.|....
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~~~~~~~ 148 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGLEGTGFG 148 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccCCCcccC
Confidence 358999998 4444455667999999999999999 7778888888888876 48888887765543
Q ss_pred --hHHhhcCeEEEEc
Q 003389 406 --ETYDLFDDIILLS 418 (824)
Q Consensus 406 --e~~~lfD~iilL~ 418 (824)
.+..+||.|+.|+
T Consensus 149 ~~~~~~~aD~ii~l~ 163 (187)
T cd01124 149 GGDVEYLVDGVIRLR 163 (187)
T ss_pred cCceeEeeeEEEEEE
Confidence 2567899999997
|
A related protein is found in archaea. |
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.8e-10 Score=131.02 Aligned_cols=77 Identities=22% Similarity=0.258 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHHHHcC----CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 341 RGISGGQKKRVTTGEMLVGT----ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~----p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+.+||||+||++||++++.. |++|++||||+|||+.++..+.+.|+++++ +.+||+++|+|. +...||++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~--~~~vi~iTH~~~--~~~~ad~~~~ 514 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE--RHQVLCVTHLPQ--VAAHADAHFK 514 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEEChHH--HHHhcCeEEE
Confidence 56899999999999999885 699999999999999999999999999974 789999888763 5578999999
Q ss_pred EcCCe
Q 003389 417 LSEGQ 421 (824)
Q Consensus 417 L~~G~ 421 (824)
|++|.
T Consensus 515 l~k~~ 519 (563)
T TIGR00634 515 VEKEG 519 (563)
T ss_pred EEEcc
Confidence 98764
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-09 Score=113.47 Aligned_cols=134 Identities=17% Similarity=0.198 Sum_probs=86.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
..+-+|+++.+++|++++|.||||+|||||++.+++..-.. ..| .. .+.+. +-++--|.++..+...
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la--~~G------~~----vpa~~-~~i~~~~~i~~~~~~~ 83 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA--QMG------MD----VPAKS-MRLSLVDRIFTRIGAR 83 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH--HcC------Cc----cCccc-cEeccccEEEEecCcc
Confidence 46889999999999999999999999999999998763210 012 11 11111 1111112222222223
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
|++..+ +
T Consensus 84 d~~~~~-------------------------------------------------------------------------~ 90 (218)
T cd03286 84 DDIMKG-------------------------------------------------------------------------E 90 (218)
T ss_pred cccccC-------------------------------------------------------------------------c
Confidence 332211 1
Q ss_pred CH--HHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEEccC
Q 003389 344 SG--GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF-LKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 344 SG--GqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~-L~~l~~~~~~tvIisi~q~ 403 (824)
|- .|-+|++-....+++|+++++|||.+|+|+.....+... ++.+.+..+.++|++.|.+
T Consensus 91 StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 91 STFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred chHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 11 234444444444578999999999999999999999888 7777754478888887754
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-09 Score=127.62 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=68.3
Q ss_pred CCCCHHHHHHHHHHHHHHc----CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 341 RGISGGQKKRVTTGEMLVG----TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~----~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+.+||||+|||+||++++. +|+++++|||++|||..++..+.+.|+++++ +.++||++|+|. +...||+.++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~qvi~iTH~~~--~~~~ad~~~~ 504 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLPQ--VAGCGHQHFF 504 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH--HHHhCCEEEE
Confidence 4589999999999999996 5899999999999999999999999999974 688888888764 5689999999
Q ss_pred EcCCe
Q 003389 417 LSEGQ 421 (824)
Q Consensus 417 L~~G~ 421 (824)
+.++.
T Consensus 505 v~k~~ 509 (553)
T PRK10869 505 VSKET 509 (553)
T ss_pred Eeccc
Confidence 98753
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-09 Score=133.06 Aligned_cols=81 Identities=12% Similarity=0.156 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-FLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~-~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
..+|+|++|++.|++++ ++|++++||||++|+|+.....+.. .+..+.+ .+.++|+++|++. .....+|+..++ +
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~e-l~~~~~~~~~v~-~ 464 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYKE-LKALMYNREGVE-N 464 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChHH-HHHHHhcCCCeE-E
Confidence 35999999999999988 8999999999999999999988865 5666654 5788888877643 233334444433 4
Q ss_pred CeEEEe
Q 003389 420 GQIVYQ 425 (824)
Q Consensus 420 G~iv~~ 425 (824)
+.+.+.
T Consensus 465 ~~~~~d 470 (782)
T PRK00409 465 ASVEFD 470 (782)
T ss_pred EEEEEe
Confidence 555543
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.6e-09 Score=117.35 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=95.4
Q ss_pred ccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCC--ceEEEEecCC-CCCCCCCHH
Q 003389 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ--RTCAYISQHD-LHHGEMTVR 263 (824)
Q Consensus 187 L~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~--~~i~yv~Q~d-~~~~~lTV~ 263 (824)
.+=+++.+++|+.++|.||+|||||||+++|++.+++. .|.|++.. ..+.... ..+.++.+.. .-....|.
T Consensus 134 ~~~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied--~~El~~~~~~~~~l~~~~~~~~~~~~~~- 207 (308)
T TIGR02788 134 KEFLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIED--TREIFLPHPNYVHLFYSKGGQGLAKVTP- 207 (308)
T ss_pred HHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcC--ccccCCCCCCEEEEEecCCCCCcCccCH-
Confidence 34467889999999999999999999999999999875 67777753 2232211 2222222210 00000111
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
T Consensus 208 -------------------------------------------------------------------------------- 207 (308)
T TIGR02788 208 -------------------------------------------------------------------------------- 207 (308)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEE
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv 423 (824)
.-.+..+|-.+|+++++|||.+ .+..+.++.+.. .+.+++.++|..+ ..+..||+..|..|++.
T Consensus 208 ------~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~-g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~ 271 (308)
T TIGR02788 208 ------KDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNT-GHPGSITTLHAGS--PEEAFEQLALMVKSSQA 271 (308)
T ss_pred ------HHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhc-CCCeEEEEEeCCC--HHHHHHHHHHHhhcccc
Confidence 1124445667899999999996 344566666653 2335577777665 56669999999999998
Q ss_pred EecChhhHH
Q 003389 424 YQGPRDNVL 432 (824)
Q Consensus 424 ~~G~~~~~~ 432 (824)
..|.+.+..
T Consensus 272 ~~g~~~~~~ 280 (308)
T TIGR02788 272 GLGLDFAYI 280 (308)
T ss_pred ccCCCHHHH
Confidence 888777664
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-09 Score=127.72 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=67.4
Q ss_pred CCCCCHHHHHHHHHHHHHH----------cCCcEeEEeCCC-CCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHH
Q 003389 340 RRGISGGQKKRVTTGEMLV----------GTANVLYMDEIS-TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv----------~~p~iLlLDEPT-sGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~ 408 (824)
...||||||||++||++|+ .+|+++|||||| ++||+.+...+.+.|+++ + +.++|++.|++ +..
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~--~~~iiiish~~--~~~ 540 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-K--DTNVFVISHKD--HDP 540 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-C--CCeEEEEECch--hch
Confidence 3579999999999999887 599999999998 689999999999999998 3 67888888874 456
Q ss_pred hhcCeEEEEcC-CeE
Q 003389 409 DLFDDIILLSE-GQI 422 (824)
Q Consensus 409 ~lfD~iilL~~-G~i 422 (824)
..||++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 78999999986 544
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-09 Score=109.49 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCC--CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEI--STGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEP--TsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.+||+++-+..+.+..+.+|+++++||| +.++| ..+.+.+.++.+ .+.++|+++|.. .+...+|+|..+.+
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~-~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLD-SEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHh-CCCeEEEEECch--hhHHHHHHHhccCC
Confidence 3999999999999999999999999995 44444 345566666653 578899888753 45678999999999
Q ss_pred CeEEEec
Q 003389 420 GQIVYQG 426 (824)
Q Consensus 420 G~iv~~G 426 (824)
|++++.-
T Consensus 151 ~~i~~~~ 157 (174)
T PRK13695 151 GRVYELT 157 (174)
T ss_pred cEEEEEc
Confidence 9997663
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.8e-09 Score=118.25 Aligned_cols=157 Identities=15% Similarity=0.109 Sum_probs=107.5
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.. .+|
T Consensus 143 GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGerg---------------------~ev 197 (432)
T PRK06793 143 GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGERG---------------------REV 197 (432)
T ss_pred CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCCc---------------------ccH
Confidence 45688885 999999999999999999999999999998775 67776665432 256
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+|.+..... .-|+... ..| .....
T Consensus 198 ~e~~~~~l~----------------------------------------------------~~gl~~t--vvv--~~tsd 221 (432)
T PRK06793 198 KDFIRKELG----------------------------------------------------EEGMRKS--VVV--VATSD 221 (432)
T ss_pred HHHHHHHhh----------------------------------------------------hccccee--EEE--EECCC
Confidence 665532110 1111110 111 11245
Q ss_pred CCHHHHHHHHHHHHHH-------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 343 ISGGQKKRVTTGEMLV-------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv-------~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
-|.|+|+|+..+.+.+ +++-++++|+||+..|+. .+|-..+.+.-. .|.+..+..|+ +.+ ++|.-
T Consensus 222 ~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~-~G~~~~~~s~l--~~L---~ERag 293 (432)
T PRK06793 222 ESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPI-GGKTLLMESYM--KKL---LERSG 293 (432)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCC-CCeeeeeeccc--hhH---HHHhc
Confidence 8999999999998877 889999999999999996 455555555543 36666665443 234 45555
Q ss_pred EEcCCeEEEecCh
Q 003389 416 LLSEGQIVYQGPR 428 (824)
Q Consensus 416 lL~~G~iv~~G~~ 428 (824)
...+|.|...+..
T Consensus 294 ~~~~GSiT~~~tv 306 (432)
T PRK06793 294 KTQKGSITGIYTV 306 (432)
T ss_pred cCCCcceEEEEEE
Confidence 5678888766543
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.4e-09 Score=132.34 Aligned_cols=80 Identities=14% Similarity=0.069 Sum_probs=69.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHc----------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHH
Q 003389 339 MRRGISGGQKKRVTTGEMLVG----------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~----------~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~ 408 (824)
.++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++.. .|++|+|++|. .....
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~-~~~~~ 1024 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHV-PEFRE 1024 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCc-HHHHH
Confidence 456799999999999999985 7999999999999999999999999999976 57888776655 44678
Q ss_pred hhcCeEEEEcCC
Q 003389 409 DLFDDIILLSEG 420 (824)
Q Consensus 409 ~lfD~iilL~~G 420 (824)
.++|+|.|+..|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 899999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.5e-09 Score=107.36 Aligned_cols=63 Identities=21% Similarity=0.387 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHHHHcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCc
Q 003389 341 RGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p---~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~ 404 (824)
..+|.|+||.+.+...|...+ .++++|||-++|+|.....+++.|++.++ .+.-+|+++|.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccch
Confidence 457999999999998887766 89999999999999999999999988875 4678899888753
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.4e-07 Score=116.31 Aligned_cols=79 Identities=23% Similarity=0.359 Sum_probs=62.2
Q ss_pred HHcCCcEeEEeCCCCCC-CHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh--------HHhhcCeEEEEcCCeEEEecC
Q 003389 357 LVGTANVLYMDEISTGL-DSSTTFQICKFLKQMVHILDVTMIVALLQPAPE--------TYDLFDDIILLSEGQIVYQGP 427 (824)
Q Consensus 357 Lv~~p~iLlLDEPTsGL-Ds~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e--------~~~lfD~iilL~~G~iv~~G~ 427 (824)
+.++|+++++|||+.+| |+..+..+.+.++++.+ .+.++++++|++..- +.+.||.+++|.+|++...|+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 36899999999999999 79999999999999876 578888887766432 236899999999999877764
Q ss_pred hhhHHHHHHHcCC
Q 003389 428 RDNVLEFFEHMGF 440 (824)
Q Consensus 428 ~~~~~~~f~~~G~ 440 (824)
.+ +++..|+
T Consensus 728 ~~----~~~~~gl 736 (818)
T PRK13830 728 RE----FYERIGF 736 (818)
T ss_pred HH----HHHHcCC
Confidence 43 4455543
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.7e-08 Score=94.16 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCC----------CCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEIST----------GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTs----------GLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e 406 (824)
.+.++.++...+.+...+|+++++||+++ +.|......+.+.+.. +++.+.|+|++.|.+..+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLER-ARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HhcCCceEEEEEecCCcc
Confidence 45566667788888899999999999995 4454545555555444 444689999988876544
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-07 Score=111.01 Aligned_cols=105 Identities=26% Similarity=0.342 Sum_probs=84.6
Q ss_pred HHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcC--CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 003389 322 LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT--ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA 399 (824)
Q Consensus 322 L~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~--p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIis 399 (824)
|..+||+-.- -++....|||||.||+-+|..|=.. -=+++||||+-||-+.....+++.|+++.+ .|-|+|++
T Consensus 465 L~~VGL~YLt----L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRD-lGNTviVV 539 (935)
T COG0178 465 LVDVGLGYLT----LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRD-LGNTVIVV 539 (935)
T ss_pred HHHcCcCccc----ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHh-cCCeEEEE
Confidence 4456665321 1233456999999999999988554 247899999999999999999999999987 58888887
Q ss_pred EccCchhHHhhcCeEEEE------cCCeEEEecChhhHHH
Q 003389 400 LLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVLE 433 (824)
Q Consensus 400 i~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~~ 433 (824)
-|. +++...+|+|+=+ ..|+||++|+++++++
T Consensus 540 EHD--edti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 540 EHD--EDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred ecC--HHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 554 5799999999988 3689999999999874
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.3e-08 Score=100.21 Aligned_cols=57 Identities=16% Similarity=0.118 Sum_probs=40.3
Q ss_pred HHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 352 TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 352 sIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
+++++|..+|+++++|||. |..+...+++ .+. .|..++.++|.+. ..+..||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~----~a~-~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLALT----AAE-TGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHHH----HHH-cCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4678888899999999996 6665444333 333 4778888888765 346678876664
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.7e-08 Score=124.17 Aligned_cols=78 Identities=21% Similarity=0.232 Sum_probs=65.7
Q ss_pred cCCCCCHHHHHH------HHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 339 MRRGISGGQKKR------VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 339 ~~rgLSGGqrqR------vsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
.+..|||||+++ +++|++++.+|++++|||||+|||+.....+.+.|+.++. .+.++|+++|++ ++.+.||
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~-~~~~iiiith~~--~~~~~~d 861 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR-KIPQVIIVSHDE--ELKDAAD 861 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh-cCCEEEEEECCH--HHHHhCC
Confidence 345699999994 5556678899999999999999999999999999999865 366888877765 4678999
Q ss_pred eEEEEcC
Q 003389 413 DIILLSE 419 (824)
Q Consensus 413 ~iilL~~ 419 (824)
++++|..
T Consensus 862 ~~~~l~~ 868 (880)
T PRK03918 862 YVIRVSL 868 (880)
T ss_pred eEEEEEe
Confidence 9999973
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-08 Score=116.24 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=46.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcc-eEeeCCcccCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG-KITYCGHELNE 240 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG-~I~~nG~~~~~ 240 (824)
..+|++||+.+++||+++|+|||||||||||+ +|+..|. +| +|.++|.++..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~---sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS---EGYEFFLDATHSFS 71 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC---CCCEEEECCEECCC
Confidence 35899999999999999999999999999999 7777775 66 89999998764
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.3e-06 Score=90.90 Aligned_cols=152 Identities=16% Similarity=0.207 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHHHHHHH-HccCchHHHHHHHHHHHH
Q 003389 617 WAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVA-AVGRTEVISNTLGTFILL 695 (824)
Q Consensus 617 ~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl~~~ia-a~~~~~~~A~~~~~~~~~ 695 (824)
..+++++.+...-...+...+...++.+..| ......++....++.+...+..+++.+++ ...++...++.++.++..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 209 (286)
T COG0842 131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLG-VPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLIL 209 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5677888888877777777777788888888 33445556666666666677777777555 366778889999999999
Q ss_pred HHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhhcCCcccCCCCCCCCcccchhHHHHhhcCCccCCcchhHHH
Q 003389 696 IMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGV 775 (824)
Q Consensus 696 ~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf~~~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~ 775 (824)
++..+||.+.|.+.+|.|++|+.++.|..|+.+++-..-..+..+ ...|..+
T Consensus 210 ~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~~----------------------------~~~~~~~ 261 (286)
T COG0842 210 PLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWRN----------------------------DGIWISL 261 (286)
T ss_pred HHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCch----------------------------hhHHHHH
Confidence 999999999999999999999999999999999976544322111 0157788
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 003389 776 GALTGYSFLFNFLFIAALAYLN 797 (824)
Q Consensus 776 ~~L~~~~v~f~~l~~laL~~~~ 797 (824)
++|+++.+++.+++.+.++...
T Consensus 262 ~~l~~~~~v~~~~~~~~~~~~~ 283 (286)
T COG0842 262 LILLLFAVVFLLLGLLLLRRRR 283 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999998888877543
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.5e-08 Score=95.28 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=51.1
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCc
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~ 404 (824)
...-|-||-=---+.+.+.+ .-+++||||-++|.+.-+..++..|+++++ .|.-+||.+|.|.
T Consensus 127 Lh~~SHGEsf~~i~~~rf~~-~GiYiLDEPEa~LSp~RQlella~l~~la~-sGaQ~IiATHSPi 189 (233)
T COG3910 127 LHHMSHGESFLAIFHNRFNG-QGIYILDEPEAALSPSRQLELLAILRDLAD-SGAQIIIATHSPI 189 (233)
T ss_pred hhhhccchHHHHHHHHHhcc-CceEEecCccccCCHHHHHHHHHHHHHHHh-cCCeEEEEecChh
Confidence 44578888655555555544 479999999999999999999999999997 4788888888875
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.7e-08 Score=124.42 Aligned_cols=77 Identities=22% Similarity=0.234 Sum_probs=61.8
Q ss_pred cccccCccCCCCCHHHHH------HHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH----hCCcEEEEEEc
Q 003389 332 DTMVGDEMRRGISGGQKK------RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH----ILDVTMIVALL 401 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrq------RvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~----~~~~tvIisi~ 401 (824)
|+.++. ...||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. ..|.++|+++|
T Consensus 1191 ~~~~~~--~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitH 1268 (1311)
T TIGR00606 1191 DTALDM--RGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITH 1268 (1311)
T ss_pred CeecCC--CCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEec
Confidence 565542 3469999999 99999999999999999999999999999999999988742 23677877665
Q ss_pred cCchhHHhhc
Q 003389 402 QPAPETYDLF 411 (824)
Q Consensus 402 q~~~e~~~lf 411 (824)
. ...+..+|
T Consensus 1269 d-~~~~~~~~ 1277 (1311)
T TIGR00606 1269 D-EDFVELLG 1277 (1311)
T ss_pred C-HHHHHHHh
Confidence 4 44555554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.6e-08 Score=120.41 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=64.7
Q ss_pred cCCCCCHHHHHHHHH------HHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC--cEEEEEEccCchhHHhh
Q 003389 339 MRRGISGGQKKRVTT------GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD--VTMIVALLQPAPETYDL 410 (824)
Q Consensus 339 ~~rgLSGGqrqRvsI------A~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~--~tvIisi~q~~~e~~~l 410 (824)
.+..||||||+|++| |++++.+|++++|||||+|||+.....+.+.|+...+..+ .++|+++|++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 356799999999975 5899999999999999999999999999999986544332 36777777653 5578
Q ss_pred cCeEEEEc
Q 003389 411 FDDIILLS 418 (824)
Q Consensus 411 fD~iilL~ 418 (824)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.1e-07 Score=95.90 Aligned_cols=76 Identities=16% Similarity=0.137 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHHc--CCcEeEEeCCCCC---CCHHHHHHHHHHHHHHHHhCCcEEEEEEccCch------hHHhhc
Q 003389 343 ISGGQKKRVTTGEMLVG--TANVLYMDEISTG---LDSSTTFQICKFLKQMVHILDVTMIVALLQPAP------ETYDLF 411 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~--~p~iLlLDEPTsG---LDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~------e~~~lf 411 (824)
.|.++++.+.....++. +|+++++||||+. +|.....++++.++.+++ .+.|++++.|++.. .+..++
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~l~ 179 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRSIC 179 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHhhe
Confidence 56788899999988887 9999999999965 445555555555666665 47888888776542 145667
Q ss_pred CeEEEEcC
Q 003389 412 DDIILLSE 419 (824)
Q Consensus 412 D~iilL~~ 419 (824)
|-++.|+.
T Consensus 180 DgvI~L~~ 187 (234)
T PRK06067 180 DVYLKLRA 187 (234)
T ss_pred EEEEEEEe
Confidence 87777763
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.4e-08 Score=122.30 Aligned_cols=80 Identities=21% Similarity=0.082 Sum_probs=64.1
Q ss_pred ccCCCCCHHHHHHHHHHHHHHc--------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh
Q 003389 338 EMRRGISGGQKKRVTTGEMLVG--------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~--------~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~ 409 (824)
..++.|||||+++++||++|+. +|++||+||||+|||+.+...+++.|+.+.+ .|++|+|++|.+ ...-+
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~~-~l~~~ 1022 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHVE-AMKER 1022 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecHH-HHHHh
Confidence 3456799999999999999995 8999999999999999999999999999976 588988877632 22233
Q ss_pred hcCeEEEEcC
Q 003389 410 LFDDIILLSE 419 (824)
Q Consensus 410 lfD~iilL~~ 419 (824)
+-.+|.|-..
T Consensus 1023 i~~qi~V~k~ 1032 (1047)
T PRK10246 1023 IPVQIKVKKI 1032 (1047)
T ss_pred ccceEEEEEC
Confidence 4445555543
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.5e-08 Score=97.31 Aligned_cols=84 Identities=23% Similarity=0.180 Sum_probs=63.0
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCC--CCCCCCCHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHD--LHHGEMTVR 263 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d--~~~~~lTV~ 263 (824)
..+=+.+.+++|+.++|+||||||||||+++|+|+++++ .|.|.+.+..-........++++.|.+ ...+..|+.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~---~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD---ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHH
Confidence 455566778999999999999999999999999999876 899999774322222234566666544 346678999
Q ss_pred HHHHHhhhh
Q 003389 264 ETLDFSGRC 272 (824)
Q Consensus 264 E~L~f~a~~ 272 (824)
+.+..+.+.
T Consensus 91 ~~l~~~lR~ 99 (186)
T cd01130 91 DLLRSALRM 99 (186)
T ss_pred HHHHHHhcc
Confidence 998877653
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.2e-07 Score=105.68 Aligned_cols=71 Identities=27% Similarity=0.412 Sum_probs=56.0
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 264 (824)
.++++.+..++.|++++++||||+||||++..|++.+... .|. +.+++|.+|. ...++.|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---~G~--------------~kV~LI~~Dt---~RigA~E 303 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR---HGA--------------SKVALLTTDS---YRIGGHE 303 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh---cCC--------------CeEEEEeCCc---cchhHHH
Confidence 3566777788899999999999999999999999987543 332 2578888864 4468999
Q ss_pred HHHHhhhhcCC
Q 003389 265 TLDFSGRCLGV 275 (824)
Q Consensus 265 ~L~f~a~~~~~ 275 (824)
+|.+.++..++
T Consensus 304 QLr~~AeilGV 314 (484)
T PRK06995 304 QLRIYGKILGV 314 (484)
T ss_pred HHHHHHHHhCC
Confidence 99998776654
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.2e-08 Score=110.06 Aligned_cols=91 Identities=15% Similarity=0.181 Sum_probs=74.1
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---------CCceEEEEec
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---------PQRTCAYISQ 252 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---------~~~~i~yv~Q 252 (824)
.+..+|+++ +.|.+|+.++|+|+||+|||||+++|+|..+++..+-|.|-.+|.++.++. .+..+++++|
T Consensus 141 TGi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 141 VGVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred cceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 356799999 999999999999999999999999999998876333466767776654321 2346899999
Q ss_pred CCCCCCCCCHHHHHHHhhhhc
Q 003389 253 HDLHHGEMTVRETLDFSGRCL 273 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~a~~~ 273 (824)
++..+..+++.+++.+.+...
T Consensus 220 d~s~~~rl~a~e~a~~iAEyf 240 (434)
T PRK07196 220 DESPLMRIKATELCHAIATYY 240 (434)
T ss_pred CCChhhhHHHHHHHHHHHHHh
Confidence 999999999999998877543
|
|
| >TIGR01248 drrC daunorubicin resistance protein C | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.1e-07 Score=89.09 Aligned_cols=115 Identities=7% Similarity=-0.105 Sum_probs=83.9
Q ss_pred chHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhH--HHHHHHHHHHHHHHhHHHHHHHHHHccCchHHHHHHHHH
Q 003389 615 PSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAAS--RFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTF 692 (824)
Q Consensus 615 ~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~--~Ff~~~l~l~l~~~~~~sl~~~iaa~~~~~~~A~~~~~~ 692 (824)
+.+.|.+++.+...-..+++.++..++.++ .|++.... .++.++++..+.......++..++...++... .....+
T Consensus 30 ~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a~~~~~~~~-~~~~~~ 107 (152)
T TIGR01248 30 HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMALRKEGRFA-MEALEL 107 (152)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHH
Confidence 678999999999999999988877777754 48887632 22233333344444444555555554555443 334577
Q ss_pred HHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHH
Q 003389 693 ILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLL 731 (824)
Q Consensus 693 ~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~ 731 (824)
+.+++..+||.+.|.+++|+|++|+-+++|++|+.+++=
T Consensus 108 v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 108 AQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 778888889999999999999999999999999999863
|
The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters. |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-07 Score=121.04 Aligned_cols=76 Identities=20% Similarity=0.296 Sum_probs=64.9
Q ss_pred cCCCCCHHHHHHHHHHHHHH----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 339 MRRGISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv----~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
.+..||||||+|++||++++ .+|+++||||||+|||+.+...+.+.|+.+++ +.++|+++|++. ....||++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~--~~~~~d~~ 1161 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKG--TMEVADQL 1161 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChh--HHHHhhhH
Confidence 45579999999999999984 68899999999999999999999999999875 467888777754 45789999
Q ss_pred EEEc
Q 003389 415 ILLS 418 (824)
Q Consensus 415 ilL~ 418 (824)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 8664
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.6e-07 Score=118.39 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=66.1
Q ss_pred CCCCCHHHHHHHHHHHHHHc----CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 340 RRGISGGQKKRVTTGEMLVG----TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~----~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
+..||||||++++||.+++. +|++++||||++|||+.....+.+.|+++++ +..+|+++|++ .++..||+++
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~--~~~~~~d~~~ 1147 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRS--PMIEYADRAI 1147 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcH--HHHHhcceeE
Confidence 46799999999999999984 7899999999999999999999999999864 46677777776 4778999999
Q ss_pred EEcC
Q 003389 416 LLSE 419 (824)
Q Consensus 416 lL~~ 419 (824)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8753
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.44 E-value=1e-06 Score=93.30 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=37.9
Q ss_pred HHcCCcEeEEeCCCC------CCCHHHHHHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 357 LVGTANVLYMDEIST------GLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 357 Lv~~p~iLlLDEPTs------GLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
...+|+++++| |++ .+|+.....+++.|+++++..+++++++.|..
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 35799999999 765 47999999999999999987788888865543
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.2e-06 Score=77.08 Aligned_cols=59 Identities=22% Similarity=0.193 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHH-----HHHHHHHhCCcEEEEEEc
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-----FLKQMVHILDVTMIVALL 401 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~-----~L~~l~~~~~~tvIisi~ 401 (824)
..+++..+..+..+-..+|.++++||+..-.+......... .........+..+|++.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 61 GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 67777778777777777789999999999999998887764 223333334667777665
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.9e-06 Score=93.76 Aligned_cols=42 Identities=29% Similarity=0.555 Sum_probs=32.3
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcc
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~ 237 (824)
.+++.+++|.||+||||||+|++|.+.+.+. ..|.|..-+.+
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~--~~~~i~tiEdp 160 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKN--AAGHIITIEDP 160 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcC--CCCEEEEEcCC
Confidence 4678899999999999999999999876532 25666554443
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-06 Score=109.76 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=63.6
Q ss_pred CCCCCHHHHH------HHHHHHHHHcC------CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc-EEEEEEccCchh
Q 003389 340 RRGISGGQKK------RVTTGEMLVGT------ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDV-TMIVALLQPAPE 406 (824)
Q Consensus 340 ~rgLSGGqrq------RvsIA~aLv~~------p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~-tvIisi~q~~~e 406 (824)
+..||||||+ |++++++++.+ +++++|||||++||+.....+++.|+++.. .+. ++|+++|++ +
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~-~~~~qviiish~~--~ 855 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRR-LGVEQIVVVSHDD--E 855 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHh-cCCCeEEEEECCh--H
Confidence 4579999999 89999888853 367999999999999999999999999875 344 677777765 3
Q ss_pred HHhhcCeEEEEcC
Q 003389 407 TYDLFDDIILLSE 419 (824)
Q Consensus 407 ~~~lfD~iilL~~ 419 (824)
....||+++.|..
T Consensus 856 ~~~~ad~~~~~~~ 868 (880)
T PRK02224 856 LVGAADDLVRVEK 868 (880)
T ss_pred HHHhcCeeEEeec
Confidence 4578999999964
|
|
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-05 Score=98.96 Aligned_cols=69 Identities=19% Similarity=0.261 Sum_probs=51.0
Q ss_pred HHHHHHcCCcEeEEeCCCCCC-CHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh--hcCeEEEEcCCeEE
Q 003389 353 TGEMLVGTANVLYMDEISTGL-DSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD--LFDDIILLSEGQIV 423 (824)
Q Consensus 353 IA~aLv~~p~iLlLDEPTsGL-Ds~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~--lfD~iilL~~G~iv 423 (824)
|++++.++|+++++|||+.+| |+..+..+.+.++.+.+ .|.++++++|++. ++.+ .++.|+-..+.+|.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~~-d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSLS-DAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHhhCchHHHHHHcCCccee
Confidence 567888999999999999999 79999999999999876 4778887766554 3433 33444444444444
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.1e-05 Score=92.57 Aligned_cols=51 Identities=24% Similarity=0.298 Sum_probs=43.7
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCc
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~ 236 (824)
.+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.+...|.
T Consensus 149 TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~---~~vi~~iG~ 199 (440)
T TIGR01026 149 TGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD---VNVIALIGE 199 (440)
T ss_pred ceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---EEEEEEEee
Confidence 456799999 999999999999999999999999999998776 565555443
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.5e-07 Score=101.45 Aligned_cols=73 Identities=23% Similarity=0.339 Sum_probs=58.2
Q ss_pred CcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCC---cccCCCC-------CCceEE
Q 003389 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG---HELNEFV-------PQRTCA 248 (824)
Q Consensus 179 ~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG---~~~~~~~-------~~~~i~ 248 (824)
....+..+++.++ .|.+|+.++|+|||||||||||++|+|+.+++ .|.|.+.| +++.++. .++.++
T Consensus 148 ~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd---~gvv~liGergrev~e~~~~~l~~~r~rtI~ 223 (450)
T PRK06002 148 GLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD---TVVIALVGERGREVREFLEDTLADNLKKAVA 223 (450)
T ss_pred EcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---eeeeeecccCCccHHHHhHHHHHHhhCCeEE
Confidence 3344567888886 89999999999999999999999999998886 78888864 5543321 236799
Q ss_pred EEecCCC
Q 003389 249 YISQHDL 255 (824)
Q Consensus 249 yv~Q~d~ 255 (824)
+|+|.|.
T Consensus 224 vV~qsd~ 230 (450)
T PRK06002 224 VVATSDE 230 (450)
T ss_pred EEEcCCC
Confidence 9999764
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.3e-07 Score=105.90 Aligned_cols=80 Identities=14% Similarity=0.171 Sum_probs=55.9
Q ss_pred HHcCCCccccccccCccCCCCCHHHHHHHHHH--HHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 003389 323 KILGLDICADTMVGDEMRRGISGGQKKRVTTG--EMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400 (824)
Q Consensus 323 ~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA--~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi 400 (824)
+.+++++..+.... .+|+|++|||.|+ .++...|+.. ...+.++.+.++.+.+ .|+|++++.
T Consensus 101 ~~~~l~~~l~~i~~-----~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~-~g~TvLLts 164 (484)
T TIGR02655 101 GGFDLSALIERINY-----AIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQ-IGVTTVMTT 164 (484)
T ss_pred ccCCHHHHHHHHHH-----HHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 34455544454443 4999999999999 5565554333 4677788888888865 589999998
Q ss_pred ccCchh-------H-HhhcCeEEEEc
Q 003389 401 LQPAPE-------T-YDLFDDIILLS 418 (824)
Q Consensus 401 ~q~~~e-------~-~~lfD~iilL~ 418 (824)
|+.... + ..++|.|+.|+
T Consensus 165 h~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 165 ERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred cCcccccccccCCceeEeeeeEEEEE
Confidence 865321 2 45789999997
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.4e-06 Score=87.55 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+++|.||||||||||.++|++.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00015 Score=77.00 Aligned_cols=193 Identities=10% Similarity=0.079 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhhhccc-cCCCCCcccchhhHHHHHHHHHHHHHhhHHHHHHHhhhhh
Q 003389 525 RACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRT-EMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLP 603 (824)
Q Consensus 525 ~~~~~R~~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~-~~~~~~~~~~~~~~g~lFf~~~~~~f~~~~~~~~~~~~~~ 603 (824)
++..+||++...|.|..|++-.+-.++.|+.. ..|... +....+..+.+.+.+...+ +....... + --.
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~--~~~~~~p~--l-----~~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLAPW--VFLFLIPA--I-----TMR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHHHH--HHHHHHHH--H-----HHH
Confidence 56789999999999999988777777766442 222110 1011111122222222111 11111111 1 124
Q ss_pred HHHHHhhcCcc--------chHHHHHHHHHHHHHHHHHhHh---hhheeeecccC--CCchhHHHHHHHHHHHHHHHhHH
Q 003389 604 IFYKQRDHLFY--------PSWAFALPIWLLRIPISILDST---IWVALTYYTIG--YDPAASRFFKQFLAFFSIHNMSL 670 (824)
Q Consensus 604 vf~ker~~~~Y--------~~~ay~la~~l~~iP~~~~~~~---if~~i~Y~~~G--l~~~~~~Ff~~~l~l~l~~~~~~ 670 (824)
.+-+||+.+.. +.+.+.++|++.-.-+.++..+ ++....++... -..+.+.++..++.+++...+..
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVYT 151 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHH
Confidence 67788888764 4678899998887654433222 12211111111 12356667666777777777888
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHH
Q 003389 671 PLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQT 728 (824)
Q Consensus 671 sl~~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~ 728 (824)
+++.++++++++..+|..++.....++.+.-+++-+. ..|+|..|+.|+||..|-.+
T Consensus 152 aig~~iSsl~~~q~~a~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~l~~~sp~~~~~~ 208 (240)
T TIGR03518 152 AIGLFASSLTENQIVAFIIAVFLCFLFYFGFDGLASL-LWGGSAYTISELGLSYHYES 208 (240)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhh-cchhHHHHHHHcCHHHHHHH
Confidence 9999999999999888766644433322211222111 24889999999999776544
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.4e-06 Score=88.02 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=47.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC--CceEEEEecCCCCCCCCCHHHHHHHh
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP--QRTCAYISQHDLHHGEMTVRETLDFS 269 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~--~~~i~yv~Q~d~~~~~lTV~E~L~f~ 269 (824)
+|++++|+|+||||||||+++|+|++.+ +.++|.++..... +...++.+|+...++..++.+++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 6999999999999999999999998765 4777776543211 12345666665555666777776654
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.1e-05 Score=84.54 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=28.5
Q ss_pred ccccce-eeEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 003389 185 RILKDV-SGIVKPSRMTLLLGPPGAGKTTLMLALA 218 (824)
Q Consensus 185 ~IL~~v-s~~I~~Ge~~aLlGpnGSGKSTLL~~La 218 (824)
+-|+++ .+=+++|++++|.||||+|||||...++
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 346663 5779999999999999999999998655
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.1e-05 Score=97.50 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=47.4
Q ss_pred CCCCHHHHHHHHHHHHHHc--CCcEeEEeCC---CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 341 RGISGGQKKRVTTGEMLVG--TANVLYMDEI---STGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~--~p~iLlLDEP---TsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
+|.|-=+.....++.+|-. +++++++||| |+.+|... .....++.+.+..+.++++++|. .++.+++++
T Consensus 665 ~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~--~el~~l~~~ 738 (854)
T PRK05399 665 SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHY--HELTELEEK 738 (854)
T ss_pred cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEech--HHHHHHhhh
Confidence 4577766666677776654 8999999999 88888544 23345555554435778888776 466677765
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.3e-06 Score=67.87 Aligned_cols=37 Identities=32% Similarity=0.456 Sum_probs=29.9
Q ss_pred ccceeeEEeC-CeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 187 LKDVSGIVKP-SRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 187 L~~vs~~I~~-Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
.++.++.+.+ |.+++|.|||||||||||+++.=.+-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3456777776 569999999999999999999766544
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=6.7e-06 Score=92.23 Aligned_cols=79 Identities=20% Similarity=0.223 Sum_probs=59.6
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~ 265 (824)
-++.+.-.+++|++++|+|+||+|||||+++|+|...+. +|+|.+++.........+.+.+++|+..++.+ ....+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~---~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~ 259 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQK---TGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRE 259 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccc---eeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhh
Confidence 355566677899999999999999999999999998876 99999987543333335678999998766643 34444
Q ss_pred HHH
Q 003389 266 LDF 268 (824)
Q Consensus 266 L~f 268 (824)
+.+
T Consensus 260 ~~l 262 (356)
T PRK01889 260 LQL 262 (356)
T ss_pred hcc
Confidence 433
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.9e-06 Score=92.98 Aligned_cols=71 Identities=25% Similarity=0.357 Sum_probs=57.3
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-------CCceEEEEecC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQH 253 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~i~yv~Q~ 253 (824)
.+..+++++ +.+.+|+.++|+|+||+|||||+++|++..+++..+-|.|-.+|+++.++. ..+.+++|...
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 345799999 999999999999999999999999999998877444599999999875431 12456666654
|
|
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00023 Score=80.28 Aligned_cols=94 Identities=20% Similarity=0.250 Sum_probs=70.4
Q ss_pred CCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCC-----CHHHHHHH----------HHHHHHHHH
Q 003389 326 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGL-----DSSTTFQI----------CKFLKQMVH 390 (824)
Q Consensus 326 gL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGL-----Ds~t~~~I----------~~~L~~l~~ 390 (824)
+|+...||.- --...=||-.-|=..|.+||=..+++||+||=||+- |...+.-+ ++.++++.+
T Consensus 308 ~LP~g~dT~~--FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~ 385 (448)
T PF09818_consen 308 NLPGGKDTTC--FSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYE 385 (448)
T ss_pred hCCCCCCCCc--ccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHH
Confidence 4555555541 122347999999999999999999999999999874 44444433 556677777
Q ss_pred hCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 391 ILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 391 ~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
+.|.++|++. --+...++.+|+|++|++=+.
T Consensus 386 ~~GvStIlV~-Ggsgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 386 KLGVSTILVV-GGSGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred HcCceEEEEe-ccchhhHhhCCEEEEecCccc
Confidence 7788888876 556788999999999998553
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=97.85 E-value=3e-05 Score=89.63 Aligned_cols=63 Identities=10% Similarity=0.107 Sum_probs=44.4
Q ss_pred cCCcEeEEeCCCCCC----C-----HHHHHHHHHHHHHHHHhCCcEEEEEEccCch-------hHHhhcCeEEEEcCCe
Q 003389 359 GTANVLYMDEISTGL----D-----SSTTFQICKFLKQMVHILDVTMIVALLQPAP-------ETYDLFDDIILLSEGQ 421 (824)
Q Consensus 359 ~~p~iLlLDEPTsGL----D-----s~t~~~I~~~L~~l~~~~~~tvIisi~q~~~-------e~~~lfD~iilL~~G~ 421 (824)
.+|+++++|..++=. + .....+++..|.++++..+.|++++.|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 478999999887521 1 1234566677888888889999998664322 1456899999998654
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00073 Score=83.86 Aligned_cols=47 Identities=26% Similarity=0.282 Sum_probs=39.4
Q ss_pred HHHcCCcEeEEeCCCCCCC-HHHHHHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 356 MLVGTANVLYMDEISTGLD-SSTTFQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 356 aLv~~p~iLlLDEPTsGLD-s~t~~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
.+.++|+++++|||..+|| +..+..+.+.++++.+ .|..+++++|.+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~ 685 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK-LNTFVIFATQSV 685 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH
Confidence 4567999999999999999 8888899999999875 577777776655
|
|
| >COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0054 Score=66.05 Aligned_cols=204 Identities=17% Similarity=0.161 Sum_probs=118.3
Q ss_pred cHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHHHHHhhhccccCCCCCcccchhhHHHHHHHHHHHHH-h-hHHHH
Q 003389 519 SKWELFRACFAREWLLMKRNSFV-YIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMF-N-GFAEN 595 (824)
Q Consensus 519 s~~~q~~~~~~R~~~~~~R~~~~-~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~~~g~lFf~~~~~~f-~-~~~~~ 595 (824)
..++.+.++.+|+.+...|++.+ +.--++.-+++.++.+.+|-.+-.. . +-++.-.++.+++...| + +.++-
T Consensus 15 ~~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~-~----~~~~~~~l~~G~~~w~f~~~~i~~~ 89 (263)
T COG1682 15 KYRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRS-P----GLNFLAYLLAGLILWFFFSEAISEG 89 (263)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhC-C----CcchHHHHHHHHHHHHHHHHHHHhH
Confidence 45778889999999998887643 2334444444555444444332111 1 12233333333332222 2 22222
Q ss_pred HHHh-hhhhHHHHHhhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHHHH
Q 003389 596 AMTV-LRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYR 674 (824)
Q Consensus 596 ~~~~-~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl~~ 674 (824)
...+ ++...+.| .. .|+..+.++.++.++--.++..++....+=+.-+.+ ...+......+.+....+.+++.
T Consensus 90 ~~s~~~n~~li~k-~~---~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~--s~~~l~~~~~l~~l~l~~~g~~l 163 (263)
T COG1682 90 AGSVVANAALIKK-IN---FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP--SWHWLLLLPALLLLILFSVGLGL 163 (263)
T ss_pred HHHhhhhHHHHhC-CC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233 33333332 22 477888888888887665555444433333333333 33444444455555556666666
Q ss_pred HHHHccCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHH
Q 003389 675 LVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVN 733 (824)
Q Consensus 675 ~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~N 733 (824)
++|+++--.---..+-+.+.-+++..+|.+-+.+.+|.-++|+..+||+.+-.|.+=..
T Consensus 164 ~~a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~ 222 (263)
T COG1682 164 ILASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAP 222 (263)
T ss_pred HHHhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHH
Confidence 66666554433334445666777778999999999999999999999999999875443
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.1e-06 Score=84.52 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=26.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
++|++++|.||||||||||+++|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 68999999999999999999999998763
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PF12679 ABC2_membrane_2: ABC-2 family transporter protein | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0033 Score=67.26 Aligned_cols=162 Identities=18% Similarity=0.180 Sum_probs=92.0
Q ss_pred hHHHHHhhcCc--------cchHHHHHHHHHHHHHHHHHhHhhhhee------eecc-cCCCchhHHHHHHHHHHHHHHH
Q 003389 603 PIFYKQRDHLF--------YPSWAFALPIWLLRIPISILDSTIWVAL------TYYT-IGYDPAASRFFKQFLAFFSIHN 667 (824)
Q Consensus 603 ~vf~ker~~~~--------Y~~~ay~la~~l~~iP~~~~~~~if~~i------~Y~~-~Gl~~~~~~Ff~~~l~l~l~~~ 667 (824)
..+-+||+.+- ++-+.++++|++.-+...++ .++...+ .++. .|.+.+...++...+...++..
T Consensus 88 ~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (277)
T PF12679_consen 88 DLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLL-LLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLL 166 (277)
T ss_pred HHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 46777887763 35678999999998877432 1111111 1222 4556666666655544443333
Q ss_pred ---hHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhhcccc---CCCCchhhh--HhhhhhCHHHHHHHHHHHHhhcCCc
Q 003389 668 ---MSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVM---AKDDIEPFL--RWGYYISPMMYGQTSLLVNEFLGGR 739 (824)
Q Consensus 668 ---~~~sl~~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i---~~~~ip~w~--~W~~~iSp~~Ya~~al~~NEf~~~~ 739 (824)
+..+++.++++++++...|..++..+............ ....-.+|. ..+.+++|..+ ++.+..+...+..
T Consensus 167 ~~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~ 245 (277)
T PF12679_consen 167 AVLVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSP-FNLLIGSILGGGF 245 (277)
T ss_pred HHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHH-HHHHHHHhhcccc
Confidence 45789999999999988888777665555533333322 111111111 23466666542 2222211111000
Q ss_pred ccCCCCCCCCcccchhHHHHhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 003389 740 WDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAAL 793 (824)
Q Consensus 740 ~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~~L~~~~v~f~~l~~laL 793 (824)
. ..+.|.++++++++.++|..+++...
T Consensus 246 -----------~----------------~~~~~~~~~~~~~~~~v~l~la~~~F 272 (277)
T PF12679_consen 246 -----------V----------------WLSTWPSLLILLAYTLVFLALAYYRF 272 (277)
T ss_pred -----------c----------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 03468889999999999998888543
|
|
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00014 Score=86.18 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=44.0
Q ss_pred HHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEcc--------------CchhHHhhcCeEEEEcCCeE
Q 003389 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ--------------PAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 357 Lv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q--------------~~~e~~~lfD~iilL~~G~i 422 (824)
|..+|+++++||.=..-| ++.+..++. .|..++.++|. ....+...+|+|+.+.+|++
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~~-ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMRL-AGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHHH-cCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCEE
Confidence 667899999999985322 233333332 25567777762 34456678999999999999
Q ss_pred --EEecCh
Q 003389 423 --VYQGPR 428 (824)
Q Consensus 423 --v~~G~~ 428 (824)
+|.+..
T Consensus 393 ~~v~~~~~ 400 (602)
T PRK13764 393 SKVYDLEF 400 (602)
T ss_pred EEEEeeee
Confidence 777763
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00053 Score=73.72 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=34.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.+.|+++.+-+++|+++.|.||+|+|||||+..++...
T Consensus 16 g~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 16 PFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred CcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999999999999887543
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.3e-05 Score=88.55 Aligned_cols=72 Identities=19% Similarity=0.205 Sum_probs=54.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC---------CCCCceEEEEecCCCCCCCCCHHHH
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE---------FVPQRTCAYISQHDLHHGEMTVRET 265 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~---------~~~~~~i~yv~Q~d~~~~~lTV~E~ 265 (824)
++|++++++||||+||||++..|++.+.+. .|+|.+.+.+... ...++.+.+++|.....|..++.++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~---g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~ 188 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ---GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDA 188 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHH
Confidence 579999999999999999999999998764 6899987776521 1113457888887665666677777
Q ss_pred HHHh
Q 003389 266 LDFS 269 (824)
Q Consensus 266 L~f~ 269 (824)
+..+
T Consensus 189 l~~~ 192 (318)
T PRK10416 189 IQAA 192 (318)
T ss_pred HHHH
Confidence 7654
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.3e-05 Score=100.20 Aligned_cols=58 Identities=16% Similarity=0.301 Sum_probs=49.2
Q ss_pred CCCCCHHHHHHHH----HHHH--------HHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEc
Q 003389 340 RRGISGGQKKRVT----TGEM--------LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401 (824)
Q Consensus 340 ~rgLSGGqrqRvs----IA~a--------Lv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~ 401 (824)
..+||||||||+. +|.+ +..+|++++|||||+|||+.+...+++.++++ +.++|++++
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~ 1314 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSE 1314 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEcc
Confidence 4679999999996 4644 55799999999999999999999999999887 567777653
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.2e-05 Score=79.85 Aligned_cols=37 Identities=24% Similarity=0.511 Sum_probs=30.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~ 239 (824)
|++++|+||||||||||+++|++.+.+ .+.+++..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~------~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT------QLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC------eEEEcCEECC
Confidence 789999999999999999999998654 4666665544
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=97.74 E-value=8.4e-05 Score=83.77 Aligned_cols=62 Identities=11% Similarity=0.145 Sum_probs=41.7
Q ss_pred cCCcEeEEeCCCC----CCC-----HHHHHHHHHHHHHHHHhCCcEEEEEEccCc-------hhHHhhcCeEEEEcCC
Q 003389 359 GTANVLYMDEIST----GLD-----SSTTFQICKFLKQMVHILDVTMIVALLQPA-------PETYDLFDDIILLSEG 420 (824)
Q Consensus 359 ~~p~iLlLDEPTs----GLD-----s~t~~~I~~~L~~l~~~~~~tvIisi~q~~-------~e~~~lfD~iilL~~G 420 (824)
.+|+++++|+..+ .+| .....+++..|+++++..+.|++++-|-.. ..+..++|.|+.++..
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 4799999999743 333 123445667788888888888888644221 1256778999988643
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.74 E-value=8.1e-05 Score=93.51 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=66.3
Q ss_pred cCCCCCHHHHHHHHHHHHH------HcC--CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh
Q 003389 339 MRRGISGGQKKRVTTGEML------VGT--ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aL------v~~--p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l 410 (824)
++..|||||+=.++||-+| ..+ -++|||||||..||+.+...+++.|..+... +.+|+|++|++ +..+.
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~qiiIISH~e--el~e~ 888 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GRQIIIISHVE--ELKER 888 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeChH--HHHHh
Confidence 6778999999988887554 345 6899999999999999999999999999874 78888877754 67789
Q ss_pred cCeEEEEcC
Q 003389 411 FDDIILLSE 419 (824)
Q Consensus 411 fD~iilL~~ 419 (824)
+|.++.+..
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 999998864
|
|
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=5.8e-05 Score=67.86 Aligned_cols=48 Identities=23% Similarity=0.336 Sum_probs=36.6
Q ss_pred CCCCCHHHH-HHHHHHHH------HHc------CCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 003389 340 RRGISGGQK-KRVTTGEM------LVG------TANVLYMDEISTGLDSSTTFQICKFLKQ 387 (824)
Q Consensus 340 ~rgLSGGqr-qRvsIA~a------Lv~------~p~iLlLDEPTsGLDs~t~~~I~~~L~~ 387 (824)
..++||||| ..+.++.+ +-. .|++++||||+++||......+++.|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 346999999 44444432 222 3799999999999999999999999875
|
|
| >PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.005 Score=66.39 Aligned_cols=71 Identities=10% Similarity=0.080 Sum_probs=48.0
Q ss_pred HHHhHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhh
Q 003389 665 IHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEF 735 (824)
Q Consensus 665 ~~~~~~sl~~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf 735 (824)
....+.+++.++|+++.-.--...+-++++-+++..+|.+-+.+.+|.+++|+.+.||+.+..|+.=..-|
T Consensus 158 ~~l~~~glglils~l~v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~~~~~il~~NPl~~~ie~~R~~~~ 228 (264)
T PRK15176 158 AWLLGLSFGYFCDALSERFPLVYKAVPVMLRPMFLISAVFYTANELPYSLLSIFSWNPLLHANEIVREGMF 228 (264)
T ss_pred HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHhhhHHhCcHHHHHHHHHCcHHHHHHHHHHHHh
Confidence 34444455555554443222223344466677778888888889999999999999999999997544433
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.2e-05 Score=84.39 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=44.4
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCc
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~ 236 (824)
.+..+++++ +.+.+|+.++|+|+||+|||||+++|+|...++ .|.+..-|.
T Consensus 55 tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~~vi~~iGe 105 (326)
T cd01136 55 TGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTAD---VNVIALIGE 105 (326)
T ss_pred CCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCC---EEEEEEEec
Confidence 346799999 999999999999999999999999999998876 576666553
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 824 | ||||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-09 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-08 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 7e-07 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 1e-06 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-06 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 4e-06 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 4e-06 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 4e-06 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 4e-06 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 4e-06 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 7e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-05 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-05 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-05 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-05 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-05 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-05 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-05 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 3e-05 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 3e-05 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 5e-05 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 5e-05 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 5e-05 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 7e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-04 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-04 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-04 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-04 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-04 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-04 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 4e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 4e-04 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 8e-04 |
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 1e-17
Identities = 36/265 (13%), Positives = 87/265 (32%), Gaps = 60/265 (22%)
Query: 165 NMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD 224
+ S L + L S +L+ ++ ++ + GP G GKTTL+ ++ L
Sbjct: 5 HHHGSKLEIRDL--SVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL 62
Query: 225 LRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 284
G+I Y G + + + ++ + + +++V + L GV
Sbjct: 63 ---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVEDYLKAVASLYGV--------- 108
Query: 285 LSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI- 343
+ + L+ + + ++++ +
Sbjct: 109 -KVNKNEI--------------------------MDALESVEV---------LDLKKKLG 132
Query: 344 --SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401
S G +RV L+ A + +D+ +D + ++ K + +++ + +I
Sbjct: 133 ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS--- 189
Query: 402 QPAPETYDLFDDIILLSEGQIVYQG 426
+ E D L +
Sbjct: 190 --SREELSYCDVNENLHKYSTKIDK 212
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 81.8 bits (201), Expect = 6e-16
Identities = 99/688 (14%), Positives = 193/688 (28%), Gaps = 193/688 (28%)
Query: 45 FSRSERQ----DDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDK 100
F E Q D A ++ D M +L + + H + + AV
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQD--MPKSILSK-EEIDHIIMSKD-AVSGT 64
Query: 101 KRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLL 160
RL ++L EE +KF++ + R + Y L + R P+++
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEV-LRIN------------YKFLMSP--IKTEQRQ-PSMM 108
Query: 161 NVALNMLESALGLLHLVPS--KKRSVRILKDVSGI------VKPSRMTLLLGPPGAGKTT 212
M L+ K +V L+ + ++P++ L+ G G+GKT
Sbjct: 109 TR---MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 213 LMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272
+ L + + KI + + + C
Sbjct: 166 VALDVCLSYKVQCKMDFKIFW--------------------------LNL-------KNC 192
Query: 273 LGVGTRYELLAELSRR-EKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331
T E+L +L + + + D + ++ ++ + L+ + L +
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-CLLVLL 251
Query: 332 DTMVGD-EMRRGISGGQKKRVTTGEMLV------GTANVLYMDEISTGLDSSTTFQIC-K 383
+ V + + + K +TT V T + +D S L + K
Sbjct: 252 N--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 384 FL--------KQMVHI--LDVTMIVALLQPAPETYDLFDD--------IILLS------- 418
+L ++++ +++I ++ T+D + II S
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 419 EGQIVYQG----PRD-----NVLEFF-EHMGFKCPERKGVADFLQEVTSKKDQEQYWFRK 468
E + ++ P +L + + ++ E ++
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM-----VVVNKLHKYSLVE----KQ 420
Query: 469 NQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACF 528
+ S +L+V + A S+V + Y I K F
Sbjct: 421 PKESTI-----------SIPSIYL---ELKVKLENEYALHRSIV-DHYNIPK------TF 459
Query: 529 AREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIM 588
L+ Y + + + + F +F
Sbjct: 460 -DSDDLIPPYLDQYFYS--------------HIGHHLKNIEHPERMTLFRMVFLDF---- 500
Query: 589 FNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTY--YTI 646
F E K R H A SIL+ T+ Y Y
Sbjct: 501 --RFLEQ-----------KIR-HDSTAWNA----------SGSILN-TLQQLKFYKPYIC 535
Query: 647 GYDPAASRFFKQFLAFFSIHNMSLPLYR 674
DP R L F + + L
Sbjct: 536 DNDPKYERLVNAILDF--LPKIEENLIC 561
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 53/268 (19%), Positives = 84/268 (31%), Gaps = 82/268 (30%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE-- 240
ILK +S ++ + L+GP GAGKTT + ++ + SG +T G + E
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEP 83
Query: 241 --------FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA 292
++P+ AY M E L F S E +
Sbjct: 84 HEVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYA----------SSSSEIEE 125
Query: 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT 352
+ + +I GL V S G +++
Sbjct: 126 MV------------------------ERATEIAGLGEKIKDRVS-----TYSKGMVRKLL 156
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV----------HILDVTMIVALLQ 402
L+ + +DE ++GLD ++ K LKQ H +
Sbjct: 157 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML--------- 207
Query: 403 PAPETYDLFDDIILLSEGQIVYQGPRDN 430
E L D I L+ G IV G +
Sbjct: 208 ---EVEFLCDRIALIHNGTIVETGTVEE 232
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 1e-15
Identities = 51/273 (18%), Positives = 82/273 (30%), Gaps = 90/273 (32%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
L +SG V+ + L+GP GAGK+TL+ +AG G I + G L +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG----MTSGKGSIQFAGQPLEAWSAT 69
Query: 245 ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
AY+SQ V L + +K E+
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWH-----------------YLTLHQHDKT-----RTEL- 106
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT-------TG 354
+ V L LD +SGG+ +RV
Sbjct: 107 ----------------LNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 145
Query: 355 EMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD---------VTMIVALLQPAP 405
+L +DE LD + Q + + ++++
Sbjct: 146 PQANPAGQLLLLDEPMNSLD----------VAQQSALDKILSALSQQGLAIVMSS----- 190
Query: 406 ETYDL------FDDIILLSEGQIVYQGPRDNVL 432
+DL LL G+++ G R+ VL
Sbjct: 191 --HDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 5e-15
Identities = 61/302 (20%), Positives = 107/302 (35%), Gaps = 82/302 (27%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
K L+ G ++ + ++GP G GKTT + LAG GK+ +
Sbjct: 363 LVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDLTV 419
Query: 238 LNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ PQ YI E TV E LL+++ + +
Sbjct: 420 A--YKPQ----YIKAEY----EGTVYE----------------LLSKIDSSKLNSNFY-- 451
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
T+ +LK LG+ D V D +SGG+ +RV L
Sbjct: 452 -------------------KTE-LLKPLGIIDLYDRNVED-----LSGGELQRVAIAATL 486
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF------ 411
+ A++ +DE S LD + + ++ ++ + T +V +D+
Sbjct: 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV-------EHDVLMIDYVS 539
Query: 412 DDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQE--VTSKKDQEQYWFRKN 469
D +I+ EG+ G + R+G+ FL +T ++D + R N
Sbjct: 540 DRLIVF-EGEPGRHGRALPPM----------GMREGMNRFLASVGITFRRDPDSGRPRAN 588
Query: 470 QP 471
+
Sbjct: 589 KE 590
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 8e-08
Identities = 42/228 (18%), Positives = 75/228 (32%), Gaps = 59/228 (25%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL---RASGKITYCGHELNE 240
+ IVK + ++GP G GKTT + LAG+L +L S NE
Sbjct: 104 NAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE 163
Query: 241 FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP-DPE 299
+ +
Sbjct: 164 ---------------------------------------LQNYFERLKNGEIRPVVKPQY 184
Query: 300 IDAFMKAVAVAGQETSLVT--------DYVLKILGLDICADTMVGDEMRRGISGGQKKRV 351
+D K AV G+ L+ + V+K L L+ D + +SGG+ +RV
Sbjct: 185 VDLLPK--AVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQ-----LSGGELQRV 237
Query: 352 TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA 399
L+ A+ + DE S+ LD ++ + ++++ + ++V
Sbjct: 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVV 284
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 6e-15
Identities = 58/259 (22%), Positives = 95/259 (36%), Gaps = 51/259 (19%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
ILK +S + +L G GAGKTTL+ L SG + G +
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGY 90
Query: 244 Q----RTC-AYISQ--HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
R ++S + V + + SG +G Y+
Sbjct: 91 SAETVRQHIGFVSHSLLEKFQEGERVIDVV-ISGAFKSIG-VYQ--------------DI 134
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
D E ++ A +LK++G+ A +G +S G+K+RV
Sbjct: 135 DDE----IRNEA----------HQLLKLVGMSAKAQQYIGY-----LSTGEKQRVMIARA 175
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD-VTMIVAL--LQPAPETYDLFDD 413
L+G VL +DE + GLD + L + + MI ++ F
Sbjct: 176 LMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITA---NFSK 232
Query: 414 IILLSEGQIVYQGPRDNVL 432
I+LL +GQ + QG +++L
Sbjct: 233 ILLLKDGQSIQQGAVEDIL 251
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 2e-14
Identities = 62/301 (20%), Positives = 108/301 (35%), Gaps = 82/301 (27%)
Query: 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238
K L+ G +K + ++GP G GKTT + LAG GKI +
Sbjct: 294 VKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDLTVA 350
Query: 239 NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+ PQ YI E TV YELL+++ + +
Sbjct: 351 --YKPQ----YIKAD----YEGTV----------------YELLSKIDASKLNSNFY--- 381
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
T+ +LK LG+ D V + +SGG+ +RV L+
Sbjct: 382 ------------------KTE-LLKPLGIIDLYDREVNE-----LSGGELQRVAIAATLL 417
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF------D 412
A++ +DE S LD + + ++ ++ + T +V +D+ D
Sbjct: 418 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV-------EHDVLMIDYVSD 470
Query: 413 DIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQE--VTSKKDQEQYWFRKNQ 470
+++ EG+ G + R+G+ FL +T ++D + R N+
Sbjct: 471 RLMVF-EGEPGKYGRALPPM----------GMREGMNRFLASIGITFRRDPDTGRPRANK 519
Query: 471 P 471
Sbjct: 520 E 520
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 47/258 (18%), Positives = 85/258 (32%), Gaps = 76/258 (29%)
Query: 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTC 247
+VK + ++GP G GK+T + LAG+L
Sbjct: 38 LYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQL-------------------------- 71
Query: 248 AYISQHDLHHGEMTVRETLD-FSGRCLGVGTRYELLAELSR-REKQAGIKP-DPEIDAFM 304
+L + + F G EL + + + +D +
Sbjct: 72 ----IPNLCGDNDSWDGVIRAFRGN--------ELQNYFEKLKNGEIRPVVKPQYVD--L 117
Query: 305 KAVAVAGQETSLVT--------DYVLKILGLDICADTMVGDEMRRGI---SGGQKKRVTT 353
AV G+ L+ + V+K L L+ + + R I SGG+ +RV
Sbjct: 118 IPKAVKGKVIELLKKADETGKLEEVVKALELE--------NVLEREIQHLSGGELQRVAI 169
Query: 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF-- 411
L+ A + DE S+ LD + ++++ +++V +DL
Sbjct: 170 AAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVV-------EHDLAVL 221
Query: 412 ----DDIILLSEGQIVYQ 425
D I ++ VY
Sbjct: 222 DYLSDIIHVVYGEPGVYG 239
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 1e-13
Identities = 61/301 (20%), Positives = 106/301 (35%), Gaps = 80/301 (26%)
Query: 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238
KK L +G K + +LGP G GKTT L G++ D G +T L
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQIL 332
Query: 239 NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+Y Q + + TV++ L+
Sbjct: 333 ---------SYKPQRIFPNYDGTVQQYLE------------------------------- 352
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
A A +S + V K L L ++ V D +SGG+ +++ L
Sbjct: 353 ------NASKDALSTSSWFFEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLA 401
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF------D 412
A++ +D+ S+ LD + + K +K++ + +DL D
Sbjct: 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII-------DHDLSIHDYIAD 454
Query: 413 DIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQE--VTSKKDQEQYWFRKNQ 470
II+ +G+ G + + + G+ +FL+E VT ++D E R N+
Sbjct: 455 RIIVF-KGEPEKAGLATSPVTL----------KTGMNEFLRELEVTFRRDAETGRPRVNK 503
Query: 471 P 471
Sbjct: 504 I 504
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 4e-09
Identities = 53/329 (16%), Positives = 107/329 (32%), Gaps = 65/329 (19%)
Query: 187 LKDVS-GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
K K + + +LG G GKTT++ LAG++ + E+ + +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNF-GDPNSKVGKDEVLKRFRGK 72
Query: 246 TCAYISQHDLHHGEMTVR--ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAF 303
+ + V + ++++ + L GT E+L ++ R K
Sbjct: 73 EIYNYFKELYSNELKIVHKIQYVEYASKFLK-GTVNEILTKIDERGK------------- 118
Query: 304 MKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
D V ++L + + +SGG +R+ L+ A+V
Sbjct: 119 --------------KDEVKELLNMTNLWNKDANI-----LSGGGLQRLLVAASLLREADV 159
Query: 364 LYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF------DDIILL 417
D+ S+ LD + K +++++ + +IV +DL D I ++
Sbjct: 160 YIFDQPSSYLDVRERMNMAKAIRELLK--NKYVIVV-------DHDLIVLDYLTDLIHII 210
Query: 418 SEGQIVYQGPRD--NVLEFF----------EHMGFKCPERKGVADFLQEVTSKKDQEQYW 465
VY E+M + E K + + ++ KD +
Sbjct: 211 YGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKM 270
Query: 466 FRKNQPYRYIPVSDFVEGFKSFHMGQQIA 494
+ V+ G+ I
Sbjct: 271 KWTKIIKKLGDFQLVVDNG-EAKEGEIIG 298
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 3e-13
Identities = 38/250 (15%), Positives = 83/250 (33%), Gaps = 56/250 (22%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+ + ++ + + +LG G GK+TL+ L G GKI E+ +
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP---IQGKI-----EVY-----Q 66
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRY-ELLAELSRREKQAGIKPDPEIDAFM 304
+ ++ Q +V + + GR + + A+ + Q
Sbjct: 67 SIGFVPQFFSSPFAYSVLDIVLM-GR-----STHINTFAKPKSHDYQV------------ 108
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
L L L A +SGGQ++ + + ++
Sbjct: 109 -------------AMQALDYLNLTHLAKREFTS-----LSGGQRQLILIARAIASECKLI 150
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL--LQPAPETYDLFDDIILLSEGQI 422
+DE ++ LD + + L + ++T++ + + +LL++
Sbjct: 151 LLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA---IANKTLLLNKQNF 207
Query: 423 VYQGPRDNVL 432
+ G N+L
Sbjct: 208 KF-GETRNIL 216
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 5e-12
Identities = 44/220 (20%), Positives = 72/220 (32%), Gaps = 56/220 (25%)
Query: 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238
K + +L G S + +++G G GKTTL+ LAG L D G+
Sbjct: 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------- 409
Query: 239 NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+P+ + Q TVR+ + + + Q
Sbjct: 410 ---IPKLNVSMKPQKIAPKFPGTVRQLFFKK-----------IRGQFLNPQFQ------- 448
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
V+K L +D D V +SGG+ +RV L
Sbjct: 449 --------------------TDVVKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALG 483
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV 398
A++ +DE S LDS K +++ + T +
Sbjct: 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI 523
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 9e-10
Identities = 49/263 (18%), Positives = 87/263 (33%), Gaps = 71/263 (26%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+ +P ++ L+G G GK+T + LAGK +L G+
Sbjct: 89 ANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFD---------- 135
Query: 243 PQRTCAYISQHDLHHGEMTVRETLD-FSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
+E + F G L + L K IKP +D
Sbjct: 136 ---------------DPPEWQEIIKYFRGSEL----QNYFTKMLEDDIKAI-IKP-QYVD 174
Query: 302 AFMKAV-----------AVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI---SGGQ 347
+A+ + +++ +KIL L+ + ++R I SGG+
Sbjct: 175 NIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLE--------NVLKRDIEKLSGGE 226
Query: 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407
+R G V A+V DE S+ LD + ++ ++ +I
Sbjct: 227 LQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICV-------E 278
Query: 408 YDLF------DDIILLSEGQIVY 424
+DL D + ++ VY
Sbjct: 279 HDLSVLDYLSDFVCIIYGVPSVY 301
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 9e-11
Identities = 43/264 (16%), Positives = 82/264 (31%), Gaps = 68/264 (25%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
K L++++ V ++LGP G+GKTTL+ A++G L SG I G E
Sbjct: 12 SGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPY---SGNIFINGME 66
Query: 238 LNEFVPQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
+ + R + + +TV + + G+
Sbjct: 67 VRKIRNYIRYSTNLPEAYEIG--VTVNDIVYLYEELKGL--------------------D 104
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
+KA+ L + + +S GQ V T
Sbjct: 105 RDLFLEMLKAL-------KLGEEI----------LRRKLYK-----LSAGQSVLVRTSLA 142
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD------L 410
L ++ +DE +D++ I +++K+ I+ T++
Sbjct: 143 LASQPEIVGLDEPFENVDAARRHVISRYIKE----YGKEGILV-------THELDMLNLY 191
Query: 411 FDDIILLSEGQIVYQ-GPRDNVLE 433
+ G + +LE
Sbjct: 192 KEYKAYFLVGNRLQGPISVSELLE 215
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 9e-09
Identities = 58/257 (22%), Positives = 102/257 (39%), Gaps = 70/257 (27%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+LKD++ ++ ++ + G GAGKT+L++ + G+L + GKI + G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG---------- 69
Query: 246 TCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
++ SQ + G T++E + F G Y+ R + I A
Sbjct: 70 RISFCSQFSWIMPG--TIKENIIF-------GVSYD-----EYRYRSV-------IKA-- 106
Query: 305 KAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDEMRRGI--SGGQKKRVTTGEMLVGTA 361
L D + D + ++G+ GI SGGQ+ R++ + A
Sbjct: 107 ---------CQLEED--ISKFAEKD---NIVLGE---GGITLSGGQRARISLARAVYKDA 149
Query: 362 NVLYMDEISTGLDSST---TFQ--ICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
++ +D LD T F+ +CK + IL VT + L+ A D I++
Sbjct: 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL-VTSKMEHLKKA-------DKILI 201
Query: 417 LSEGQIVYQGPRDNVLE 433
L EG + G +
Sbjct: 202 LHEGSSYFYGTFSELQN 218
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 60/289 (20%), Positives = 106/289 (36%), Gaps = 82/289 (28%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
L ++ + + ++G G GK++L+ AL ++ K G + G
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVAIKG---------- 66
Query: 246 TCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
+ AY+ Q + + ++RE + F G + E + I A
Sbjct: 67 SVAYVPQQAWIQND--SLRENILF-------GCQLE-----EPYYRSV-------IQA-- 103
Query: 305 KAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDEMRRGI--SGGQKKRVTTGEMLVGTA 361
+L+ D L+IL D T +G+ +G+ SGGQK+RV+ + A
Sbjct: 104 ---------CALLPD--LEILPSGD---RTEIGE---KGVNLSGGQKQRVSLARAVYSNA 146
Query: 362 NVLYMDEISTGLDSST---TFQIC----KFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414
++ D+ + +D+ F+ LK IL VT ++ L D I
Sbjct: 147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRIL-VTHSMSYLPQV-------DVI 198
Query: 415 ILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQ 463
I++S G+I G +L A+FL+ S
Sbjct: 199 IVMSGGKISEMGSYQELLA----------RDGAFAEFLRTYASHHHHHH 237
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 57/257 (22%), Positives = 103/257 (40%), Gaps = 71/257 (27%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+LKD++ ++ ++ + G GAGKT+L++ + G+L + GKI + G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG---------- 99
Query: 246 TCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
++ SQ+ + G T++E + +G Y+ R + I A
Sbjct: 100 RISFCSQNSWIMPG--TIKENI--------IGVSYD-----EYRYRSV-------IKA-- 135
Query: 305 KAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDEMRRGI--SGGQKKRVTTGEMLVGTA 361
L D + D + ++G+ GI SGGQ+ R++ + A
Sbjct: 136 ---------CQLEED--ISKFAEKD---NIVLGE---GGITLSGGQRARISLARAVYKDA 178
Query: 362 NVLYMDEISTGLDSST---TFQ--ICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
++ +D LD T F+ +CK + IL VT + L+ A D I++
Sbjct: 179 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL-VTSKMEHLKKA-------DKILI 230
Query: 417 LSEGQIVYQGPRDNVLE 433
L EG + G +
Sbjct: 231 LHEGSSYFYGTFSELQN 247
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 4e-08
Identities = 59/255 (23%), Positives = 94/255 (36%), Gaps = 55/255 (21%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
L VS V +TL++GP G+GK+TL+ + G L D G++ + ++ P
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAEL 79
Query: 247 CAY-IS---QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
Y I Q EMTV E L C G L + ++ E +
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPG---ESPLNSLFYKKWIPK------EEEM 130
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
KA +L+ L L D G+ +SGGQ K V G L+
Sbjct: 131 VEKAFK------------ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPK 173
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMV----------HILDVTMIVALLQPAPETYDLFD 412
++ MDE G+ I + ++ H LD+ + + D
Sbjct: 174 MIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL------------NYID 221
Query: 413 DIILLSEGQIVYQGP 427
+ ++ GQI+ +G
Sbjct: 222 HLYVMFNGQIIAEGR 236
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 4e-08
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA---L 400
S GQKKRV +LV VL +DE + GLD +I K L +M L +T+I+A +
Sbjct: 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI 204
Query: 401 LQPAPETYDLFDDIILLSEGQIVYQGPRDNVL---EFFEHMGFKCPERKGVADFLQE 454
D++ ++ EG+++ QG V E + + P + + L+E
Sbjct: 205 ----DIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 53.6 bits (130), Expect = 5e-08
Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 38/134 (28%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
+ +K + V ++ L+G GAGKTT + A+AG + GKI + G ++
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDITNKPA 75
Query: 244 QRTCAYISQHDLHH--------GEMTVRETLDFSGRCLGVGTR-------------YEL- 281
I++ + E+TV E L +G R + L
Sbjct: 76 HV----INRMGIALVPEGRRIFPELTVYENLM-----MGAYNRKDKEGIKRDLEWIFSLF 126
Query: 282 --LAELSRREKQAG 293
L E R ++ G
Sbjct: 127 PRLKE--RLKQLGG 138
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+ D++ S ++GP GAGK+TL+ L G+L SG++ Y
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEV-YTHENC------- 736
Query: 246 TCAYISQHDLHHGEMTVRET-LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
AYI QH H E + +T ++ G E + +R+ + + +I
Sbjct: 737 RIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKI 792
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 53/386 (13%), Positives = 110/386 (28%), Gaps = 101/386 (26%)
Query: 101 KRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLL 160
K ++E I I + ++ + + + + + + +
Sbjct: 364 KIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVG 423
Query: 161 NVALNMLESALGLLHLVPSKKRSVR-ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219
+ + L + S + +L +K +R + GP G GK+TLM A+A
Sbjct: 424 PNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483
Query: 220 KL--GKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGT 277
G + + Y H++ D H + +V + +
Sbjct: 484 GQVDGFPTQEECRTVYVEHDI---------------DGTHSDTSVLDFV-----FESGVG 523
Query: 278 RYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337
E + + L G +
Sbjct: 524 TKEAIKD------------------------------------KLIEFGFTD-------E 540
Query: 338 EMRRGI---SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394
+ I SGG K ++ ++ A++L +DE + LD+ + +L
Sbjct: 541 MIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITS-- 598
Query: 395 TMIVALLQPAPETYDLF------DDIILLSEGQIV-YQGPRDNVLEFFEHMGFKCPERKG 447
+ + ++D + II ++ Y+G N EF + KCP K
Sbjct: 599 -ITI--------SHDSVFLDNVCEYIINYEGLKLRKYKG---NFTEFVK----KCPAAK- 641
Query: 448 VADFLQEVTSKKDQEQYWFRKNQPYR 473
+ + + Y
Sbjct: 642 ------AYEELSNTDLEFKFPEPGYL 661
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 1e-05
Identities = 55/256 (21%), Positives = 99/256 (38%), Gaps = 68/256 (26%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASGKITYCGHELNEF 241
IL+D+S +P+ + GP G GK+T+ L R +G+IT G ++
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL-------ERFYQPTAGEITIDGQPIDNI 69
Query: 242 VPQ---RTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ ++SQ + G T+RE L Y G++ D
Sbjct: 70 SLENWRSQIGFVSQDSAIMAG--TIRENL-----------TY-------------GLEGD 103
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTGE 355
+ + + +A + + + +T VG+ RG+ SGGQ++R+
Sbjct: 104 YTDEDLWQVLDLAF-----ARSF---VENMPDQLNTEVGE---RGVKISGGQRQRLAIAR 152
Query: 356 MLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV-----ALLQPAPETYDL 410
+ +L +DE + LDS + + K L ++ T +V + + A
Sbjct: 153 AFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRLSTIVDA------ 204
Query: 411 FDDIILLSEGQIVYQG 426
D I + +GQI G
Sbjct: 205 -DKIYFIEKGQITGSG 219
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA---L 400
SGG+K+RV ++V ++L +DE GLD + + +++ L T+I+ +
Sbjct: 140 SGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW-KTLGKTVILISHDI 198
Query: 401 LQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFE 436
+ D +++L +G+ V+ G R LE ++
Sbjct: 199 ----ETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 230
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 5e-05
Identities = 53/255 (20%), Positives = 102/255 (40%), Gaps = 67/255 (26%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASGKITYCGHELNEF 241
IL +++ +K + ++G G+GK+TL + R +G++ GH+L
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI-------QRFYIPENGQVLIDGHDLALA 76
Query: 242 VPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
P R + Q + + + S + + P
Sbjct: 77 DPNWLRRQVGVVLQ-----------DNVLLNR---------------SIIDNISLANPGM 110
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTGEM 356
++ + A +AG D+ I L +T+VG+ +G SGGQ++R+
Sbjct: 111 SVEKVIYAAKLAG-----AHDF---ISELREGYNTIVGE---QGAGLSGGQRQRIAIARA 159
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV-----ALLQPAPETYDLF 411
LV +L DE ++ LD + I + + ++ T+I+ + ++ A
Sbjct: 160 LVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLSTVKNA------- 210
Query: 412 DDIILLSEGQIVYQG 426
D II++ +G+IV QG
Sbjct: 211 DRIIVMEKGKIVEQG 225
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 36/131 (27%), Positives = 53/131 (40%), Gaps = 23/131 (17%)
Query: 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVT-------M 396
SGGQK+RV L VL D+ ++ LD +TT I + LK + L +T M
Sbjct: 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM 224
Query: 397 IVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVT 456
V + D + ++S G+++ Q V E F H P+ F+Q
Sbjct: 225 DVV--------KRICDCVAVISNGELIEQDT---VSEVFSH-----PKTPLAQKFIQSTL 268
Query: 457 SKKDQEQYWFR 467
E Y R
Sbjct: 269 HLDIPEDYQER 279
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Length = 279 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 10/114 (8%)
Query: 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALA-----GK--LGKDLRASGKITYCGHELN-EF 241
+ +V + L+ P GAGK+ L L LA G L +G + Y E
Sbjct: 24 LPNMV-AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTA 82
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGI 294
+ R A + + L L E L R + +
Sbjct: 83 IHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRL 136
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 44/200 (22%), Positives = 74/200 (37%), Gaps = 49/200 (24%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-Q 244
IL+ +S V P + ++GP G+GK+TL LAG+ ++ G + + G +L P
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLALSPED 93
Query: 245 RTCA-------Y---ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGI 294
R Y I GV ++ L L+ G
Sbjct: 94 RAGEGIFMAFQYPVEIP----------------------GVSNQFFLQTALNAVRSYRGQ 131
Query: 295 KPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTG 354
+ D F + + +L + + ++ + G SGG+KKR
Sbjct: 132 ETLDRFD-FQDLMEEK-----------IALLKMP---EDLLTRSVNVGFSGGEKKRNDIL 176
Query: 355 EMLVGTANVLYMDEISTGLD 374
+M V + +DE +GLD
Sbjct: 177 QMAVLEPELCILDESDSGLD 196
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 19/109 (17%)
Query: 332 DTMVGDEMRRGI--SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV 389
DT+VG+ +G+ SGG+++R+ L+ ++ DE ++ LDS T + K ++ +
Sbjct: 146 DTIVGN---KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR 202
Query: 390 HILDVTMIV-----ALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433
+ T+I+ + + A + IILL++G+IV +G ++L+
Sbjct: 203 K--NRTLIIIAHRLSTISSA-------ESIILLNKGKIVEKGTHKDLLK 242
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 49/229 (21%), Positives = 83/229 (36%), Gaps = 64/229 (27%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA--SGKITYCGHELNE 240
V L +V+ ++ +LGP GAGKTT M +AG L +G++ + +
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG-----LDVPSTGELYFDDRLVAS 71
Query: 241 ----FVP--QRTCAYISQ------HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRR 288
VP R + Q + +T E + F + +
Sbjct: 72 NGKLIVPPEDRKIGMVFQTWALYPN------LTAFENIAFPLTNMKM------------- 112
Query: 289 EKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQK 348
EI ++ VA KIL + V + R +SG Q+
Sbjct: 113 -------SKEEIRKRVEEVA--------------KILDI-----HHVLNHFPRELSGAQQ 146
Query: 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397
+RV LV ++L +DE + LD+ +K++ L VT++
Sbjct: 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLL 195
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 8e-04
Identities = 48/197 (24%), Positives = 74/197 (37%), Gaps = 63/197 (31%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA--SGKITYCGHELNE 240
+ L +++ +K LLGP G+GK+TL+ +AG + SGKI + ++ E
Sbjct: 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG-----IYKPTSGKIYFDEKDVTE 69
Query: 241 FVPQ-RTCAYISQ------HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
P+ R + Q H MTV + + F
Sbjct: 70 LPPKDRNVGLVFQNWALYPH------MTVYKNIAFPLELRKA------------------ 105
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR--RGISGGQKKRV 351
P EID ++ VA K+L +D + R +SGGQ++RV
Sbjct: 106 --PREEIDKKVREVA--------------KMLHIDKLLN-------RYPWQLSGGQQQRV 142
Query: 352 TTGEMLVGTANVLYMDE 368
LV VL +DE
Sbjct: 143 AIARALVKEPEVLLLDE 159
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 824 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.98 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.98 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.97 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.97 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.97 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.97 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.96 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.95 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.95 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.94 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.94 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.94 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.94 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.94 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.93 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.88 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.88 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.87 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.87 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.86 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.86 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.86 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.83 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.81 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.8 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.8 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.79 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.79 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.77 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.77 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.76 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.75 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.75 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.74 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.73 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.72 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.71 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.71 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.69 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.68 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.68 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.67 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.66 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.65 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.65 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.65 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.64 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.62 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.62 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.62 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.61 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.61 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.61 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.61 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.6 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.6 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.6 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.58 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.57 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.56 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.46 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.46 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.45 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.44 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.43 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.43 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.42 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.42 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.42 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.4 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.39 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.37 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.35 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.33 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.32 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.32 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.31 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.3 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.28 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.25 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.24 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.23 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.23 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.23 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.18 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.18 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.15 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.14 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.13 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.09 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.05 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.05 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.05 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.03 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.02 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.01 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.0 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.88 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.88 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.86 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.85 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.84 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.84 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.75 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.74 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.71 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.7 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.62 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.57 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.54 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.54 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.53 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.5 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.47 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.46 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.33 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.28 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.26 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.25 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.19 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.16 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.14 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.13 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.11 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.09 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.05 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.05 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.01 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.94 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.91 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.88 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.85 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.83 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.79 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.76 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.72 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.71 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.71 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.7 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.69 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.68 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.67 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.66 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.66 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.64 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.62 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.58 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.56 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.55 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.47 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.43 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.42 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.41 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.38 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.32 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.31 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.29 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.28 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.26 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.25 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.25 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.19 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.18 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.11 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.11 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.02 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.01 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.0 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.0 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.99 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 96.98 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.98 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.94 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.92 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.9 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.86 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.83 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.83 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.8 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.8 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.78 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.77 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.77 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.76 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.74 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.66 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.66 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.65 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 96.64 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.61 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.6 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.59 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.57 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.49 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.49 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.48 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.47 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.41 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.37 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.37 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.36 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.34 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.32 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.31 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.26 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.22 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.1 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 96.06 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 96.04 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.02 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.02 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 95.99 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.98 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.98 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.9 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.88 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.87 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.84 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.83 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.83 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.82 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 95.81 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.78 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.72 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.69 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.69 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 95.68 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.66 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 95.66 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 95.64 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 95.62 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 95.62 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.6 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.55 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.54 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 95.52 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.44 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.43 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.41 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.4 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.38 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.31 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 95.3 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 95.26 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.24 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.16 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.15 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 95.09 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 95.08 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.08 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 95.01 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 94.99 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 94.98 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 94.98 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 94.97 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 94.95 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 94.94 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 94.89 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 94.88 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 94.87 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 94.87 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 94.86 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 94.85 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 94.84 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 94.84 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 94.81 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 94.81 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 94.81 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 94.8 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 94.76 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 94.76 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 94.74 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 94.74 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 94.74 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 94.74 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 94.72 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 94.72 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 94.72 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 94.72 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 94.71 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 94.7 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 94.69 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 94.68 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 94.67 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 94.65 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 94.64 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 94.61 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 94.57 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 94.56 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 94.55 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 94.55 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 94.54 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 94.54 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 94.53 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 94.5 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 94.49 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 94.47 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 94.45 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 94.45 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 94.42 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 94.42 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 94.41 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 94.37 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 94.37 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 94.36 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 94.32 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 94.28 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 94.28 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 94.26 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 94.24 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 94.24 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 94.23 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 94.22 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 94.22 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 94.2 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 94.14 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 94.11 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 94.11 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 94.06 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 94.06 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 94.04 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 94.04 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 94.03 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 94.03 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 94.03 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 94.03 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 94.02 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 93.99 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 93.97 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 93.97 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 93.95 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 93.93 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 93.9 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 93.9 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 93.9 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 93.9 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 93.9 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 93.89 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 93.89 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 93.88 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 93.88 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 93.88 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 93.85 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 93.84 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 93.84 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 93.83 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 93.81 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 93.8 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 93.78 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 93.76 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 93.74 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 93.73 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 93.72 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 93.7 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 93.69 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 93.66 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 93.65 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 93.65 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 93.64 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 93.63 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 93.62 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 93.6 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 93.6 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 93.59 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 93.58 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 93.57 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 93.55 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 93.55 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 93.52 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 93.51 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 93.5 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 93.5 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 93.49 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 93.49 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 93.48 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 93.48 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 93.47 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 93.44 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 93.43 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 93.4 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 93.38 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 93.37 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 93.34 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 93.3 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 93.29 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 93.28 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 93.27 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 93.24 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 93.22 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 93.2 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 93.2 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 93.15 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 93.13 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 93.13 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 93.1 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 93.09 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.07 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.04 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 92.99 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 92.94 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 92.9 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 92.88 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 92.86 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 92.82 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 92.81 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 92.76 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 92.72 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 92.7 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 92.61 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 92.59 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 92.59 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 92.58 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 92.54 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 92.49 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 92.49 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 92.49 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 92.44 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 92.44 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 92.43 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 92.4 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 92.39 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 92.23 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 92.17 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 92.17 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 92.16 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 92.11 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 92.11 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 92.08 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 92.05 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 92.04 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 92.04 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 92.03 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 91.98 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 91.94 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 91.9 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 91.67 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 91.64 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 91.51 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 91.4 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 91.39 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 91.39 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 91.35 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 91.18 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 91.09 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 91.08 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 91.08 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 91.06 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 91.05 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 90.87 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 90.81 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=399.63 Aligned_cols=222 Identities=24% Similarity=0.318 Sum_probs=188.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC------CceEEEEecCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDLH 256 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~~i~yv~Q~d~~ 256 (824)
..++|+|||++|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++..... ++.+|||+|++.+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 356999999999999999999999999999999999999997 9999999999875432 3579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++.+||+||+.|+.+..+... . +....++++|+.+||.+.++..++
T Consensus 117 ~~~~TV~env~~~~~~~~~~~----------~------------------------~~~~~v~~lL~~vgL~~~~~~~~~ 162 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTPK----------D------------------------EVKRRVTELLSLVGLGDKHDSYPS 162 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCCH----------H------------------------HHHHHHHHHHHHHTCGGGTTCCTT
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCchHhcCChh
Confidence 999999999999876543211 0 011246778999999988887776
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
.|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|++++++.|.|+|+++| ...++.++||+|++
T Consensus 163 -----~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTH-dl~~~~~~aDrv~v 236 (366)
T 3tui_C 163 -----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITH-EMDVVKRICDCVAV 236 (366)
T ss_dssp -----TSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEES-CHHHHHHHCSEEEE
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEec-CHHHHHHhCCEEEE
Confidence 499999999999999999999999999999999999999999999998777899998765 45678899999999
Q ss_pred EcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHh
Q 003389 417 LSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 455 (824)
|++|++++.|+++++. ..|.......|+...
T Consensus 237 l~~G~iv~~g~~~ev~--------~~p~~~~~~~~~~~~ 267 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF--------SHPKTPLAQKFIQST 267 (366)
T ss_dssp EETTEEEECCBHHHHH--------SSCCSHHHHHHHHHH
T ss_pred EECCEEEEEcCHHHHH--------hCCCcHHHHHHHhhc
Confidence 9999999999999874 234443445555543
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-45 Score=402.22 Aligned_cols=207 Identities=22% Similarity=0.338 Sum_probs=180.5
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCccc----CCCCC-CceEEEEecCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL----NEFVP-QRTCAYISQHDLHH 257 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~----~~~~~-~~~i~yv~Q~d~~~ 257 (824)
++++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++ ....+ ++.+|||+|+..++
T Consensus 16 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~ 92 (359)
T 3fvq_A 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLF 92 (359)
T ss_dssp TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCC
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCC
Confidence 457999999999999999999999999999999999999997 99999999987 22222 46799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
|.+||+||+.|+.+.++... .+ ....++++|+.+||++..|..+++
T Consensus 93 p~ltV~eni~~~l~~~~~~~--------------------~~--------------~~~~v~~~l~~~gL~~~~~r~~~~ 138 (359)
T 3fvq_A 93 PHLTVYRNIAYGLGNGKGRT--------------------AQ--------------ERQRIEAMLELTGISELAGRYPHE 138 (359)
T ss_dssp TTSCHHHHHHTTSTTSSCCS--------------------HH--------------HHHHHHHHHHHHTCGGGTTSCGGG
T ss_pred CCCCHHHHHHHHHHHcCCCh--------------------HH--------------HHHHHHHHHHHcCCchHhcCChhh
Confidence 99999999999876543211 00 112467789999999988887764
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.|.|+|+++| ...++..+||+|++|
T Consensus 139 -----LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTH-d~~ea~~~aDri~vl 212 (359)
T 3fvq_A 139 -----LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSH-DREEALQYADRIAVM 212 (359)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECC-CHHHHHHHCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHHCCEEEEE
Confidence 99999999999999999999999999999999999999999999887777889888764 566899999999999
Q ss_pred cCCeEEEecChhhHH
Q 003389 418 SEGQIVYQGPRDNVL 432 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (824)
++|+++..|+++++.
T Consensus 213 ~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 213 KQGRILQTASPHELY 227 (359)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEEeCHHHHH
Confidence 999999999999874
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-45 Score=403.39 Aligned_cols=207 Identities=25% Similarity=0.363 Sum_probs=182.8
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lT 261 (824)
+..+|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.+|||+|+..++|.+|
T Consensus 15 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~lt 91 (381)
T 3rlf_A 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 91 (381)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSC
T ss_pred CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCC
Confidence 457999999999999999999999999999999999999997 9999999999876544 467999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.|+.+.++... . +...+++++++.+||++..+..+.+
T Consensus 92 V~eni~~~~~~~~~~~----------~------------------------~~~~~v~~~l~~~~L~~~~~r~p~~---- 133 (381)
T 3rlf_A 92 VAENMSFGLKLAGAKK----------E------------------------VINQRVNQVAEVLQLAHLLDRKPKA---- 133 (381)
T ss_dssp HHHHHTHHHHHTTCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTCCGGG----
T ss_pred HHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhcCChhH----
Confidence 9999999876543211 0 0112467789999999988877764
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.++.|.|+|+++ |...++..+||+|++|++|+
T Consensus 134 -LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vT-Hd~~ea~~~aDri~vl~~G~ 211 (381)
T 3rlf_A 134 -LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT-HDQVEAMTLADKIVVLDAGR 211 (381)
T ss_dssp -SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEC-SCHHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEE-CCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999876688988875 55678999999999999999
Q ss_pred EEEecChhhHH
Q 003389 422 IVYQGPRDNVL 432 (824)
Q Consensus 422 iv~~G~~~~~~ 432 (824)
++..|+++++.
T Consensus 212 i~~~g~~~~l~ 222 (381)
T 3rlf_A 212 VAQVGKPLELY 222 (381)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEeCHHHHH
Confidence 99999999875
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-44 Score=383.57 Aligned_cols=207 Identities=27% Similarity=0.348 Sum_probs=175.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-----CCCceEEEEecCC-CCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----VPQRTCAYISQHD-LHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d-~~~ 257 (824)
..+|+|||++|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++... ..++.+|||+|++ ..+
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~ 97 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQL 97 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTC
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCccccc
Confidence 45999999999999999999999999999999999999997 99999999988421 1236799999986 345
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||+||+.|+....+... . +....++++|+.+||++..+..+++
T Consensus 98 ~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~L~~~~~~~~~~ 143 (275)
T 3gfo_A 98 FSASVYQDVSFGAVNMKLPE----------D------------------------EIRKRVDNALKRTGIEHLKDKPTHC 143 (275)
T ss_dssp CSSBHHHHHHHHHHTSCCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred ccCcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhcCCccc
Confidence 57899999999865443210 0 0112456789999999888887764
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++..|.|+|+++|+. .++.++||+|++|
T Consensus 144 -----LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l 217 (275)
T 3gfo_A 144 -----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVM 217 (275)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999733488999887654 5788899999999
Q ss_pred cCCeEEEecChhhHHH
Q 003389 418 SEGQIVYQGPRDNVLE 433 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (824)
++|++++.|+++++..
T Consensus 218 ~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 218 KEGRVILQGNPKEVFA 233 (275)
T ss_dssp ETTEEEEEECHHHHTH
T ss_pred ECCEEEEECCHHHHhc
Confidence 9999999999988753
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-44 Score=395.53 Aligned_cols=207 Identities=26% Similarity=0.397 Sum_probs=180.6
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lT 261 (824)
++++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+|
T Consensus 27 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 103 (355)
T 1z47_A 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMT 103 (355)
T ss_dssp STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSC
T ss_pred CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCC
Confidence 456999999999999999999999999999999999999997 9999999998865433 467999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.|+.+.++... .+ ....++++++.+||++..+..+++
T Consensus 104 v~eni~~~l~~~~~~~----------~~------------------------~~~~v~~~l~~~gL~~~~~r~~~~---- 145 (355)
T 1z47_A 104 VYDNVSFGLREKRVPK----------DE------------------------MDARVRELLRFMRLESYANRFPHE---- 145 (355)
T ss_dssp HHHHHHHHHHHTTCCH----------HH------------------------HHHHHHHHHHHTTCGGGTTSCGGG----
T ss_pred HHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCChhHhcCCccc----
Confidence 9999999865433210 00 112467789999999988877764
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.|.|+|+++| ...++..+||+|++|++|+
T Consensus 146 -LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH-d~~~a~~~adri~vl~~G~ 223 (355)
T 1z47_A 146 -LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTH-DQEEALEVADRVLVLHEGN 223 (355)
T ss_dssp -SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECS-CHHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECC-CHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999998766889888765 5568889999999999999
Q ss_pred EEEecChhhHH
Q 003389 422 IVYQGPRDNVL 432 (824)
Q Consensus 422 iv~~G~~~~~~ 432 (824)
++..|+++++.
T Consensus 224 i~~~g~~~~l~ 234 (355)
T 1z47_A 224 VEQFGTPEEVY 234 (355)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEcCHHHHH
Confidence 99999998874
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-44 Score=395.17 Aligned_cols=207 Identities=29% Similarity=0.373 Sum_probs=181.1
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lT 261 (824)
++++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++++|
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 91 (359)
T 2yyz_A 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMT 91 (359)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSC
T ss_pred CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCC
Confidence 356999999999999999999999999999999999999997 9999999999865433 467999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.|+.+.++.. +.+ ....++++++.+||++..+..+++
T Consensus 92 v~eni~~~~~~~~~~----------~~~------------------------~~~~v~~~l~~~~L~~~~~r~~~~---- 133 (359)
T 2yyz_A 92 VFENIAFPLRARRIS----------KDE------------------------VEKRVVEIARKLLIDNLLDRKPTQ---- 133 (359)
T ss_dssp HHHHHHGGGSSSCSH----------HHH------------------------TTHHHHHHHHHTTCGGGTTSCGGG----
T ss_pred HHHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCCchHhcCChhh----
Confidence 999999986544321 000 112467789999999988887764
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.|.|+|+++|+ ..++..+||+|++|++|+
T Consensus 134 -LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~~~~~adri~vl~~G~ 211 (359)
T 2yyz_A 134 -LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD-QAEAMTMASRIAVFNQGK 211 (359)
T ss_dssp -SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESC-HHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999987668898887654 568889999999999999
Q ss_pred EEEecChhhHH
Q 003389 422 IVYQGPRDNVL 432 (824)
Q Consensus 422 iv~~G~~~~~~ 432 (824)
++..|+++++.
T Consensus 212 i~~~g~~~~l~ 222 (359)
T 2yyz_A 212 LVQYGTPDEVY 222 (359)
T ss_dssp EEEEECHHHHH
T ss_pred EEEeCCHHHHH
Confidence 99999999875
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-44 Score=374.33 Aligned_cols=207 Identities=20% Similarity=0.229 Sum_probs=172.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-------CceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d~~ 256 (824)
+++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 46999999999999999999999999999999999999997 9999999998865432 2359999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc-cccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA-DTMV 335 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~-dt~v 335 (824)
++.+||+||+.++......+.. .+. +....+.++++.+||.+.. +..+
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~-------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 143 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAM-------SGE------------------------ERRKRALECLKMAELEERFANHKP 143 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCC-------CHH------------------------HHHHHHHHHHHHTTCCGGGTTCCG
T ss_pred CCCCcHHHHHHHHHHhhhccCC-------CHH------------------------HHHHHHHHHHHHCCCChhhhhCCh
Confidence 9999999999997643311000 000 0112356688999998753 6666
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
+ .|||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++++..|.|+|+++|+.. +.++||+|+
T Consensus 144 ~-----~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~ 216 (235)
T 3tif_A 144 N-----QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERII 216 (235)
T ss_dssp G-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEE
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEE
Confidence 5 499999999999999999999999999999999999999999999998755889999887653 458999999
Q ss_pred EEcCCeEEEecChhhH
Q 003389 416 LLSEGQIVYQGPRDNV 431 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~ 431 (824)
+|++|+++..++.+++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 217 YLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEETTEEEEEEECC--
T ss_pred EEECCEEEEEcChhhh
Confidence 9999999999987764
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-43 Score=373.54 Aligned_cols=205 Identities=26% Similarity=0.356 Sum_probs=177.2
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~ 259 (824)
++++|+|||++|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 23 ~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (266)
T 4g1u_C 23 QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFP 99 (266)
T ss_dssp TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSC
T ss_pred CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCC
Confidence 356999999999999999999999999999999999999997 9999999999876433 3569999999988889
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.++....... +....++++++.+||.+..+..+++
T Consensus 100 ~tv~e~l~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 141 (266)
T 4g1u_C 100 FSVSEVIQMGRAPYGGS------------------------------------QDRQALQQVMAQTDCLALAQRDYRV-- 141 (266)
T ss_dssp CBHHHHHHGGGTTSCST------------------------------------THHHHHHHHHHHTTCSTTTTSBGGG--
T ss_pred CCHHHHHHhhhhhcCcH------------------------------------HHHHHHHHHHHHcCChhHhcCCccc--
Confidence 99999999975432110 0112356789999999888887764
Q ss_pred CCCCCHHHHHHHHHHHHHHc------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 340 RRGISGGQKKRVTTGEMLVG------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~------~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
|||||||||+|||||+. +|++|||||||+|||+.++.++++.|++++++.+.|+|+++ |...++.++||+
T Consensus 142 ---LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vt-Hdl~~~~~~~d~ 217 (266)
T 4g1u_C 142 ---LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVL-HDLNLAALYADR 217 (266)
T ss_dssp ---CCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEEC-SCHHHHHHHCSE
T ss_pred ---CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEE-cCHHHHHHhCCE
Confidence 99999999999999999 99999999999999999999999999999876567888765 456678889999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 003389 414 IILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (824)
|++|++|++++.|+++++.
T Consensus 218 v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 218 IMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEEETTEEEEEECHHHHC
T ss_pred EEEEECCEEEEEcCHHHHh
Confidence 9999999999999998863
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=390.97 Aligned_cols=214 Identities=25% Similarity=0.362 Sum_probs=185.1
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCHHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV~E 264 (824)
+|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++++||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 999999999999999999999999999999999999997 9999999998865433 467999999999999999999
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
|+.|+.+.++.. . . ..++++++.+||++..+..+++ ||
T Consensus 92 nl~~~~~~~~~~--------------------~----------------~-~~v~~~l~~~~L~~~~~~~~~~-----LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIK--------------------D----------------P-KRVLDTARDLKIEHLLDRNPLT-----LS 129 (348)
T ss_dssp HHHHHHHHHCCC--------------------C----------------H-HHHHHHHHHTTCTTTTTSCGGG-----SC
T ss_pred HHHHHHHHcCCC--------------------H----------------H-HHHHHHHHHcCCchHhcCChhh-----CC
Confidence 999975433210 0 0 2356789999999988887764 99
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEE
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~ 424 (824)
|||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.|.|+|+++|+ ..++..+||+|++|++|+++.
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd-~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD-QTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999987678899887654 568889999999999999999
Q ss_pred ecChhhHHHHHHHcCCCCCCCCCHHHHHH
Q 003389 425 QGPRDNVLEFFEHMGFKCPERKGVADFLQ 453 (824)
Q Consensus 425 ~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 453 (824)
.|+++++. ..|....+++|+-
T Consensus 209 ~g~~~~~~--------~~p~~~~~a~~~g 229 (348)
T 3d31_A 209 VGKPEEIF--------EKPVEGRVASFVG 229 (348)
T ss_dssp EECHHHHH--------SSCCTTHHHHHHC
T ss_pred ECCHHHHH--------hCcccHHHHHhcC
Confidence 99998873 3455555666653
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=368.47 Aligned_cols=200 Identities=23% Similarity=0.314 Sum_probs=171.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-------CceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d~~ 256 (824)
+++|+|||++|++|++++|+||||||||||||+|+|+++|+ +|+|.++|+++..... ++.++||+|++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 56999999999999999999999999999999999999987 9999999998865321 1569999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++.+||+||+.++....+... .+ ....++++++.+||.+..+..++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~ 139 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKPK----------KE------------------------AKERGEYLLSELGLGDKLSRKPY 139 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------HH------------------------HHHHHHHHHHHTTCTTCTTCCGG
T ss_pred CCCCCHHHHHHhHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhhCChh
Confidence 999999999998754332110 00 01235678999999988887776
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++. |.|+|+++|+. .++ ++||++++
T Consensus 140 ~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~-~~~d~v~~ 211 (224)
T 2pcj_A 140 E-----LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHER-ELA-ELTHRTLE 211 (224)
T ss_dssp G-----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHH-TTSSEEEE
T ss_pred h-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCH-HHH-HhCCEEEE
Confidence 4 9999999999999999999999999999999999999999999999875 88999987764 345 89999999
Q ss_pred EcCCeEEEecCh
Q 003389 417 LSEGQIVYQGPR 428 (824)
Q Consensus 417 L~~G~iv~~G~~ 428 (824)
|++|+++++|++
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999864
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=391.42 Aligned_cols=207 Identities=28% Similarity=0.392 Sum_probs=180.8
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lT 261 (824)
++++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++++|
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 91 (362)
T 2it1_A 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMT 91 (362)
T ss_dssp SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSC
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCC
Confidence 356999999999999999999999999999999999999997 9999999999865433 467999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.|+.+.++... .+ ....++++++.+||++..+..+++
T Consensus 92 v~eni~~~~~~~~~~~----------~~------------------------~~~~v~~~l~~~~L~~~~~r~~~~---- 133 (362)
T 2it1_A 92 VYKNIAFPLELRKAPR----------EE------------------------IDKKVREVAKMLHIDKLLNRYPWQ---- 133 (362)
T ss_dssp HHHHHHHHHHHTTCCH----------HH------------------------HHHHHHHHHHHTTCTTCTTCCGGG----
T ss_pred HHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCchHhhCChhh----
Confidence 9999999865433210 00 112467789999999988877764
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.|.|+|+++|+ ..++..+||+|++|++|+
T Consensus 134 -LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~ 211 (362)
T 2it1_A 134 -LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD-QAEALAMADRIAVIREGE 211 (362)
T ss_dssp -SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCC-HHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999987668898887654 568889999999999999
Q ss_pred EEEecChhhHH
Q 003389 422 IVYQGPRDNVL 432 (824)
Q Consensus 422 iv~~G~~~~~~ 432 (824)
++..|+++++.
T Consensus 212 i~~~g~~~~~~ 222 (362)
T 2it1_A 212 ILQVGTPDEVY 222 (362)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEcCHHHHH
Confidence 99999999875
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=394.90 Aligned_cols=207 Identities=28% Similarity=0.370 Sum_probs=180.1
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC------CCC-CceEEEEecCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE------FVP-QRTCAYISQHDL 255 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~------~~~-~~~i~yv~Q~d~ 255 (824)
++++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. ..+ ++.++||+|+..
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~ 91 (372)
T 1g29_1 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91 (372)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCc
Confidence 356999999999999999999999999999999999999997 9999999998754 322 467999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (824)
+++++||+||+.|+.+.++... .+ ....++++++.+||++..+..+
T Consensus 92 l~~~ltv~eni~~~~~~~~~~~----------~~------------------------~~~~v~~~l~~~~L~~~~~r~~ 137 (372)
T 1g29_1 92 LYPHMTVYDNIAFPLKLRKVPR----------QE------------------------IDQRVREVAELLGLTELLNRKP 137 (372)
T ss_dssp CCTTSCHHHHHHHHHHHTTCCH----------HH------------------------HHHHHHHHHHHHTCGGGTTCCG
T ss_pred cCCCCCHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHCCCchHhcCCc
Confidence 9999999999999865443210 00 1124577899999999888877
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
++ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.|.|+|+++|+ ..++..+||+|+
T Consensus 138 ~~-----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~ 211 (372)
T 1g29_1 138 RE-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD-QVEAMTMGDRIA 211 (372)
T ss_dssp GG-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEE
T ss_pred cc-----CCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC-HHHHHHhCCEEE
Confidence 64 999999999999999999999999999999999999999999999987668899887654 568889999999
Q ss_pred EEcCCeEEEecChhhHH
Q 003389 416 LLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (824)
+|++|+++..|+++++.
T Consensus 212 vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 212 VMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp EEETTEEEEEECHHHHH
T ss_pred EEeCCEEEEeCCHHHHH
Confidence 99999999999999875
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=374.44 Aligned_cols=205 Identities=20% Similarity=0.320 Sum_probs=174.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccC--CCC---CCceEEEEecCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN--EFV---PQRTCAYISQHDLHHG 258 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~--~~~---~~~~i~yv~Q~d~~~~ 258 (824)
+++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++. ... .++.++||+|++.+++
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 46999999999999999999999999999999999999987 999999999874 111 1356999999999999
Q ss_pred CCCHHHHHHHhh-hhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 259 EMTVRETLDFSG-RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 259 ~lTV~E~L~f~a-~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
.+||+||+.|+. ...+... .+ ....++++++.+||.+..+..+++
T Consensus 114 ~~tv~e~l~~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~L~~~~~~~~~~ 159 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWPR----------EK------------------------AEAKAMELLDKVGLKDKAHAYPDS 159 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCCH----------HH------------------------HHHHHHHHHHHTTCGGGTTSCGGG
T ss_pred CCCHHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHCCCchHhcCChhh
Confidence 999999999864 3222110 00 012356789999999888877764
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++. |.|+|+++|+ ..++.++||++++|
T Consensus 160 -----LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd-~~~~~~~~d~v~~l 232 (263)
T 2olj_A 160 -----LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHE-MGFAREVGDRVLFM 232 (263)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSC-HHHHHHHCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCC-HHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999765 8888887654 55778899999999
Q ss_pred cCCeEEEecChhhHH
Q 003389 418 SEGQIVYQGPRDNVL 432 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (824)
++|++++.|+++++.
T Consensus 233 ~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 233 DGGYIIEEGKPEDLF 247 (263)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999998774
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=376.45 Aligned_cols=205 Identities=23% Similarity=0.300 Sum_probs=174.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC----------CC------CCceE
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----------FV------PQRTC 247 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~----------~~------~~~~i 247 (824)
+++|+|||++|++|++++|+||||||||||||+|+|+++|+ +|+|.++|+++.. .. .++.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 56999999999999999999999999999999999999987 9999999998751 11 13569
Q ss_pred EEEecCCCCCCCCCHHHHHHHhh-hhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcC
Q 003389 248 AYISQHDLHHGEMTVRETLDFSG-RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326 (824)
Q Consensus 248 ~yv~Q~d~~~~~lTV~E~L~f~a-~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg 326 (824)
+||+|++.+++.+||+||+.++. ...+... .+ ....++++++.+|
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~ 141 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLSK----------HD------------------------ARERALKYLAKVG 141 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCCH----------HH------------------------HHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCCH----------HH------------------------HHHHHHHHHHHcC
Confidence 99999999999999999999864 2222110 00 0123567899999
Q ss_pred CCcc-ccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCch
Q 003389 327 LDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP 405 (824)
Q Consensus 327 L~~~-~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~ 405 (824)
|.+. .+..+++ |||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++. |.|+|+++|+ ..
T Consensus 142 L~~~~~~~~~~~-----LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd-~~ 214 (262)
T 1b0u_A 142 IDERAQGKYPVH-----LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHE-MG 214 (262)
T ss_dssp CCHHHHTSCGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSC-HH
T ss_pred CCchhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC-HH
Confidence 9988 8877764 9999999999999999999999999999999999999999999999865 8888887654 55
Q ss_pred hHHhhcCeEEEEcCCeEEEecChhhHH
Q 003389 406 ETYDLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 406 e~~~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
++.++||+|++|++|++++.|+++++.
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 778899999999999999999998774
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=392.55 Aligned_cols=204 Identities=23% Similarity=0.319 Sum_probs=178.5
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC-----CC-CCceEEEEecCCCCCCC
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE-----FV-PQRTCAYISQHDLHHGE 259 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~-----~~-~~~~i~yv~Q~d~~~~~ 259 (824)
+|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. .. .++.++||+|+..++++
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 999999999999999999999999999999999999997 9999999998754 22 24679999999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.|+.+.++... .+ ....++++++.+||++..+..+++
T Consensus 97 ltv~eni~~~~~~~~~~~----------~~------------------------~~~~v~~~l~~~~L~~~~~~~~~~-- 140 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMSK----------EE------------------------IRKRVEEVAKILDIHHVLNHFPRE-- 140 (353)
T ss_dssp SCHHHHHHGGGTTSSCCH----------HH------------------------HHHHHHHHHHHTTCGGGTTSCGGG--
T ss_pred CCHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCchHhcCChhh--
Confidence 999999999865443210 00 112457789999999988887764
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.|.|+|+++|+ ..++..+||+|++|++
T Consensus 141 ---LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 141 ---LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD-PADIFAIADRVGVLVK 216 (353)
T ss_dssp ---SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC-HHHHHHHCSEEEEEET
T ss_pred ---CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999987668899887654 5688899999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|+++..|+++++.
T Consensus 217 G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 217 GKLVQVGKPEDLY 229 (353)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998874
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=394.41 Aligned_cols=206 Identities=24% Similarity=0.357 Sum_probs=173.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV 262 (824)
+++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++++||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 56999999999999999999999999999999999999997 9999999999865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.|+.+.++... .+ ....++++++.+||.+..+..++ .
T Consensus 101 ~eni~~~~~~~~~~~----------~~------------------------~~~~v~~~l~~~~L~~~~~r~~~-----~ 141 (372)
T 1v43_A 101 YENIAFPLKIKKFPK----------DE------------------------IDKRVRWAAELLQIEELLNRYPA-----Q 141 (372)
T ss_dssp HHHHHTTCC--CCCH----------HH------------------------HHHHHHHHHHHTTCGGGTTSCTT-----T
T ss_pred HHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCChhHhcCChh-----h
Confidence 999999865433210 00 11246778999999988887776 4
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.|.|+|+++|+ ..++..+||+|++|++|++
T Consensus 142 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD-QVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999987668898887654 5688899999999999999
Q ss_pred EEecChhhHH
Q 003389 423 VYQGPRDNVL 432 (824)
Q Consensus 423 v~~G~~~~~~ 432 (824)
+..|+++++.
T Consensus 221 ~~~g~~~~l~ 230 (372)
T 1v43_A 221 LQIGSPTEVY 230 (372)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999999875
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-43 Score=379.63 Aligned_cols=257 Identities=22% Similarity=0.330 Sum_probs=192.1
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.+.....++|+.++++.+++ ..+.........+...++++|+++.+
T Consensus 18 ~~~~~~~~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~i~~~~vs~~y----------------------------- 63 (306)
T 3nh6_A 18 GSHMFIDMENMFDLLKEETE-----VKDLPGAGPLRFQKGRIEFENVHFSY----------------------------- 63 (306)
T ss_dssp -CCTTCCHHHHHHHHHHHHS-----CCCCTTCBCCCCSSCCEEEEEEEEES-----------------------------
T ss_pred HHHHHHHHHHHHHHHhCCcc-----ccccccccccCCCCCeEEEEEEEEEc-----------------------------
Confidence 34455567788887775544 11111112223334568888887652
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
.+.+++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+|+
T Consensus 64 ----~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~ 136 (306)
T 3nh6_A 64 ----ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQD 136 (306)
T ss_dssp ----STTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSS
T ss_pred ----CCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecC
Confidence 12346999999999999999999999999999999999999997 9999999999876543 4679999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+++ .||+|||.|+..... .++..+++...+. ...++ .++...+|
T Consensus 137 ~~lf~-~Tv~eNi~~~~~~~~-------------------------~~~~~~~~~~~~l------~~~i~--~lp~gl~t 182 (306)
T 3nh6_A 137 TVLFN-DTIADNIRYGRVTAG-------------------------NDEVEAAAQAAGI------HDAIM--AFPEGYRT 182 (306)
T ss_dssp CCCCS-EEHHHHHHTTSTTCC-------------------------HHHHHHHHHHHTC------HHHHH--HSTTGGGC
T ss_pred CccCc-ccHHHHHHhhcccCC-------------------------HHHHHHHHHHhCc------HHHHH--hccchhhh
Confidence 88774 699999998642111 0111111111111 11122 34456778
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+|+ .+..|||||||||+|||||+.+|++|||||||+|||+.++..|++.|+++.+ ++|+|++.|+. ..+. .||+
T Consensus 183 ~~~~-~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l-~~~~-~aD~ 257 (306)
T 3nh6_A 183 QVGE-RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRL-STVV-NADQ 257 (306)
T ss_dssp EEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSH-HHHH-TCSE
T ss_pred HhcC-CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcCh-HHHH-cCCE
Confidence 8874 4567999999999999999999999999999999999999999999999864 67888876654 3454 5999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|+|++.|+++++..
T Consensus 258 i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 258 ILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998864
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=373.76 Aligned_cols=213 Identities=25% Similarity=0.353 Sum_probs=174.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 46999999999999999999999999999999999999987 9999999998865321 3469999999989999
Q ss_pred CCHHHHHHHhhhh--cCCchhhHHHHHhHHHHHhcCC-CCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 260 MTVRETLDFSGRC--LGVGTRYELLAELSRREKQAGI-KPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 260 lTV~E~L~f~a~~--~~~~~~~~~~~~~~~~e~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
+||+||+.++... .+. .....+ ... .+.. +....++++++.+||++..++.++
T Consensus 97 ~tv~enl~~~~~~~~~~~------~~~~~~----~~~~~~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~ 152 (257)
T 1g6h_A 97 MTVLENLLIGEICPGESP------LNSLFY----KKWIPKEE--------------EMVEKAFKILEFLKLSHLYDRKAG 152 (257)
T ss_dssp SBHHHHHHGGGTSTTSCH------HHHHHH----CSSCCCCH--------------HHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred CcHHHHHHHHHhhhccCc------cccccc----ccccCCHH--------------HHHHHHHHHHHHcCCchhhCCCch
Confidence 9999999987532 110 000000 000 0000 011235678999999988888776
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+ |||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++. |.|+|+++|+. .++.++||+|++
T Consensus 153 ~-----LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~ 225 (257)
T 1g6h_A 153 E-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRL-DIVLNYIDHLYV 225 (257)
T ss_dssp G-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCC-STTGGGCSEEEE
T ss_pred h-----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCH-HHHHHhCCEEEE
Confidence 4 9999999999999999999999999999999999999999999999764 88998887654 477889999999
Q ss_pred EcCCeEEEecChhh
Q 003389 417 LSEGQIVYQGPRDN 430 (824)
Q Consensus 417 L~~G~iv~~G~~~~ 430 (824)
|++|++++.|++++
T Consensus 226 l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 226 MFNGQIIAEGRGEE 239 (257)
T ss_dssp EETTEEEEEEESHH
T ss_pred EECCEEEEEeCHHH
Confidence 99999999999887
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-43 Score=370.20 Aligned_cols=207 Identities=25% Similarity=0.310 Sum_probs=176.5
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~l 260 (824)
++++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.... .++.++||+|++.+++.+
T Consensus 27 ~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~l 103 (256)
T 1vpl_A 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 103 (256)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCC
Confidence 356999999999999999999999999999999999999987 999999999875421 135799999999999999
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.+.....+... .+ ....++++++.+||++..++.+++
T Consensus 104 tv~enl~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~gL~~~~~~~~~~--- 146 (256)
T 1vpl_A 104 QGIEYLRFVAGFYASSS----------SE------------------------IEEMVERATEIAGLGEKIKDRVST--- 146 (256)
T ss_dssp BHHHHHHHHHHHHCCCH----------HH------------------------HHHHHHHHHHHHCCGGGGGSBGGG---
T ss_pred cHHHHHHHHHHHcCCCh----------HH------------------------HHHHHHHHHHHCCCchHhcCChhh---
Confidence 99999998654322110 00 012356789999999888887764
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|.|+|+++|+ ..++..+||++++|++|
T Consensus 147 --LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd-~~~~~~~~d~v~~l~~G 222 (256)
T 1vpl_A 147 --YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHN-MLEVEFLCDRIALIHNG 222 (256)
T ss_dssp --CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECC-HHHHTTTCSEEEEEETT
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCC-HHHHHHHCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999976 48899888765 45677889999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
++++.|+++++.+
T Consensus 223 ~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 223 TIVETGTVEELKE 235 (256)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEecCHHHHHH
Confidence 9999999988754
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-43 Score=366.20 Aligned_cols=204 Identities=23% Similarity=0.343 Sum_probs=172.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 46999999999999999999999999999999999999987 9999999998865332 2459999999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcC-CCccccccccCc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG-LDICADTMVGDE 338 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg-L~~~~dt~vg~~ 338 (824)
+||+||+.++.... .. ..+ ....++.+++.++ |.+..++.++
T Consensus 96 ltv~enl~~~~~~~-~~--------------------~~~--------------~~~~~~~~l~~~~~l~~~~~~~~~-- 138 (240)
T 1ji0_A 96 LTVYENLMMGAYNR-KD--------------------KEG--------------IKRDLEWIFSLFPRLKERLKQLGG-- 138 (240)
T ss_dssp SBHHHHHHGGGTTC-CC--------------------SSH--------------HHHHHHHHHHHCHHHHTTTTSBSS--
T ss_pred CcHHHHHHHhhhcC-CC--------------------HHH--------------HHHHHHHHHHHcccHhhHhcCChh--
Confidence 99999999863211 00 000 0113456788884 8877777665
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|+|+++|+ ..++.++||++++|+
T Consensus 139 ---~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd-~~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 139 ---TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQN-ALGALKVAHYGYVLE 213 (240)
T ss_dssp ---SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESC-HHHHHHHCSEEEEEE
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecC-HHHHHHhCCEEEEEE
Confidence 4999999999999999999999999999999999999999999999976 58899888765 456788999999999
Q ss_pred CCeEEEecChhhHH
Q 003389 419 EGQIVYQGPRDNVL 432 (824)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (824)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999988764
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=365.90 Aligned_cols=201 Identities=22% Similarity=0.327 Sum_probs=173.6
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-CCceEEEEecCCCCCCCCCHHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-~~~~i~yv~Q~d~~~~~lTV~E 264 (824)
+|+|||++|++ ++++|+||||||||||||+|+|+++|+ +|+|.++|+++.... .++.++||+|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 59999999999 999999999999999999999999987 999999999875432 2467999999999999999999
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
|+.|+...++. ... ...++++++.+||.+..+..+++ ||
T Consensus 90 nl~~~~~~~~~----------~~~--------------------------~~~~~~~l~~~~l~~~~~~~~~~-----LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----------VER--------------------------DRRVREMAEKLGIAHLLDRKPAR-----LS 128 (240)
T ss_dssp HHHTTCTTSCH----------HHH--------------------------HHHHHHHHHTTTCTTTTTCCGGG-----SC
T ss_pred HHHHHHHHcCC----------chH--------------------------HHHHHHHHHHcCCHHHhcCChhh-----CC
Confidence 99987543210 000 11356688999999888877764 99
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEE
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~ 424 (824)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++.|.|+|+++|+ ..++.++||++++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd-~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD-LIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC-HHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999976557888888765 457888999999999999999
Q ss_pred ecChhhHH
Q 003389 425 QGPRDNVL 432 (824)
Q Consensus 425 ~G~~~~~~ 432 (824)
.|+++++.
T Consensus 208 ~g~~~~~~ 215 (240)
T 2onk_A 208 KGKLKELF 215 (240)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99998874
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-42 Score=366.55 Aligned_cols=205 Identities=23% Similarity=0.373 Sum_probs=173.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCC-CCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHD-LHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d-~~~~~lTV 262 (824)
+++|+|||++|++|++++|+||||||||||||+|+|+++|+ +|+|.++|+++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 46999999999999999999999999999999999999987 999999999875322246799999985 56778999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC--ccccccccCccC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD--ICADTMVGDEMR 340 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~--~~~dt~vg~~~~ 340 (824)
+||+.|+.... .. .. +....++++++.+||. +..++.++
T Consensus 97 ~enl~~~~~~~-~~--------------------~~--------------~~~~~~~~~l~~~gl~~~~~~~~~~~---- 137 (266)
T 2yz2_A 97 FDEVAFAVKNF-YP--------------------DR--------------DPVPLVKKAMEFVGLDFDSFKDRVPF---- 137 (266)
T ss_dssp HHHHHHTTTTT-CT--------------------TS--------------CSHHHHHHHHHHTTCCHHHHTTCCGG----
T ss_pred HHHHHHHHHhc-CC--------------------HH--------------HHHHHHHHHHHHcCcCCcccccCChh----
Confidence 99999864321 10 00 0112356789999998 88887776
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++. |.|+|+++|++ .++..+||++++|++|
T Consensus 138 -~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~-~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 138 -FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDI-ETVINHVDRVVVLEKG 214 (266)
T ss_dssp -GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCC-TTTGGGCSEEEEEETT
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 49999999999999999999999999999999999999999999999765 88999887665 4677889999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
++++.|+++++..
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999888754
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-41 Score=359.81 Aligned_cols=208 Identities=26% Similarity=0.331 Sum_probs=169.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccC--CCC---CCceEEEEecCCCCC-
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN--EFV---PQRTCAYISQHDLHH- 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~--~~~---~~~~i~yv~Q~d~~~- 257 (824)
+++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++. ... .++.++||+|++.++
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 46999999999999999999999999999999999999997 999999999875 322 135799999986532
Q ss_pred -CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 258 -GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 258 -~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
+.+||+||+.++..... + ... .+..+ ....++++++.+||++..++.++
T Consensus 111 ~~~ltv~enl~~~~~~~~-~----~~~-----------~~~~~--------------~~~~~~~~l~~~gl~~~~~~~~~ 160 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSI-G----VYQ-----------DIDDE--------------IRNEAHQLLKLVGMSAKAQQYIG 160 (279)
T ss_dssp CTTSBHHHHHHTTC-------------------------CCHH--------------HHHHHHHHHHHTTCGGGTTSBGG
T ss_pred CCCCCHHHHHHhhhhhcc-c----ccc-----------CCcHH--------------HHHHHHHHHHHcCChhHhcCChh
Confidence 45799999998632100 0 000 00000 01235678999999988888776
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE--EEEEccCchhHHhhcCeE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM--IVALLQPAPETYDLFDDI 414 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tv--Iisi~q~~~e~~~lfD~i 414 (824)
+ |||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++. |+|+ |+++|+ ..++.++||+|
T Consensus 161 ~-----LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd-~~~~~~~~d~v 233 (279)
T 2ihy_A 161 Y-----LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHF-IEEITANFSKI 233 (279)
T ss_dssp G-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESC-GGGCCTTCCEE
T ss_pred h-----CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecC-HHHHHHhCCEE
Confidence 4 9999999999999999999999999999999999999999999999875 7888 887665 45777899999
Q ss_pred EEEcCCeEEEecChhhH
Q 003389 415 ILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~ 431 (824)
++|++|++++.|+++++
T Consensus 234 ~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 234 LLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEECCHHHH
Confidence 99999999999998776
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-41 Score=352.85 Aligned_cols=201 Identities=25% Similarity=0.423 Sum_probs=162.8
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~ 259 (824)
++++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|++.+++
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~- 96 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN- 96 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-
Confidence 356999999999999999999999999999999999999987 9999999998865432 357999999988776
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc-------c
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA-------D 332 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~-------d 332 (824)
+||+||+.|+.. ... .+ .++.+++.+++.+.. +
T Consensus 97 ~tv~enl~~~~~--~~~-----------------------~~---------------~~~~~l~~~~l~~~~~~~~~gl~ 136 (247)
T 2ff7_A 97 RSIIDNISLANP--GMS-----------------------VE---------------KVIYAAKLAGAHDFISELREGYN 136 (247)
T ss_dssp SBHHHHHTTTCT--TCC-----------------------HH---------------HHHHHHHHHTCHHHHHTSTTGGG
T ss_pred ccHHHHHhccCC--CCC-----------------------HH---------------HHHHHHHHhChHHHHHhCcchhh
Confidence 699999987521 000 00 122334444444332 2
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+.++ +.+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. .++|+|++.|++. .+ +.||
T Consensus 137 ~~~~-~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~tviivtH~~~-~~-~~~d 211 (247)
T 2ff7_A 137 TIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLS-TV-KNAD 211 (247)
T ss_dssp CBCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEECSSGG-GG-TTSS
T ss_pred hhhh-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHH-HH-HhCC
Confidence 3333 2356799999999999999999999999999999999999999999999994 3889999877654 44 4699
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
++++|++|++++.|+++++.
T Consensus 212 ~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 212 RIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEEETTEEEEEECHHHHH
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999998874
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-41 Score=354.04 Aligned_cols=203 Identities=24% Similarity=0.327 Sum_probs=167.2
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGE 259 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~ 259 (824)
++++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++||+|++.+++
T Consensus 14 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~- 89 (243)
T 1mv5_A 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA- 89 (243)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-
T ss_pred CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-
Confidence 456999999999999999999999999999999999999987 999999999876432 2467999999988776
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc---
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG--- 336 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg--- 336 (824)
.||+||+.|+... ... ...++.+++.+++.+..+..+.
T Consensus 90 ~tv~enl~~~~~~-~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~ 130 (243)
T 1mv5_A 90 GTIRENLTYGLEG-DYT--------------------------------------DEDLWQVLDLAFARSFVENMPDQLN 130 (243)
T ss_dssp EEHHHHTTSCTTS-CSC--------------------------------------HHHHHHHHHHHTCTTTTTSSTTGGG
T ss_pred ccHHHHHhhhccC-CCC--------------------------------------HHHHHHHHHHhChHHHHHhCccchh
Confidence 5999999875211 000 0113446777787766554321
Q ss_pred ---CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 337 ---DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 337 ---~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
++.+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|+++. .++|+|++.|++. .+ ..||+
T Consensus 131 ~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~-~~-~~~d~ 206 (243)
T 1mv5_A 131 TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHRLS-TI-VDADK 206 (243)
T ss_dssp CEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCSHH-HH-HHCSE
T ss_pred chhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCChH-HH-HhCCE
Confidence 13456799999999999999999999999999999999999999999999986 3889999877643 44 56999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 003389 414 IILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (824)
+++|++|++++.|+++++.
T Consensus 207 v~~l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELV 225 (243)
T ss_dssp EEEEETTEECCCSCHHHHH
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988775
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=356.77 Aligned_cols=209 Identities=22% Similarity=0.348 Sum_probs=167.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|||++|++|++++|+||||||||||||+|+|+++|+ +|+|.++|+++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 56999999999999999999999999999999999999987 9999999998864322 356999999988776 5
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc--CCCccccccccCc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~ 338 (824)
||+||+.|+..... .. .+. . ++.. ...++.+++.+ ||+...+..++
T Consensus 108 tv~enl~~~~~~~~--~~----~~~---------------~---~~~~------~~~~~~~l~~l~~gl~~~~~~~~~-- 155 (271)
T 2ixe_A 108 SFRENIAYGLTRTP--TM----EEI---------------T---AVAM------ESGAHDFISGFPQGYDTEVGETGN-- 155 (271)
T ss_dssp BHHHHHHTTCSSCC--CH----HHH---------------H---HHHH------HHTCHHHHHHSTTGGGSBCCGGGT--
T ss_pred cHHHHHhhhcccCC--hH----HHH---------------H---HHHH------HHhHHHHHHhhhcchhhhhcCCcC--
Confidence 99999998642110 00 000 0 0000 01234567777 67666665554
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++.++|+|+++|++ ..+ ..||+|++|+
T Consensus 156 ---~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~-~~~-~~~d~v~~l~ 230 (271)
T 2ixe_A 156 ---QLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL-SLA-ERAHHILFLK 230 (271)
T ss_dssp ---TSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH-HHH-TTCSEEEEEE
T ss_pred ---CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHH-HhCCEEEEEE
Confidence 59999999999999999999999999999999999999999999998654588998887664 344 4599999999
Q ss_pred CCeEEEecChhhHHH
Q 003389 419 EGQIVYQGPRDNVLE 433 (824)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (824)
+|++++.|+++++..
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=350.63 Aligned_cols=197 Identities=18% Similarity=0.247 Sum_probs=166.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.+ ++.++||+|++.+++.+||+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHH
Confidence 56999999999999999999999999999999999999987 999982 35699999999889899999
Q ss_pred HHHHHhhhhc-CCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 264 ETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 264 E~L~f~a~~~-~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
||+.++.... +... .+..+ ....++++++.+||.+..+..+++
T Consensus 85 enl~~~~~~~~~~~~-----------------~~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~----- 128 (253)
T 2nq2_C 85 DIVLMGRSTHINTFA-----------------KPKSH--------------DYQVAMQALDYLNLTHLAKREFTS----- 128 (253)
T ss_dssp HHHHGGGGGGSCTTC-----------------CCCHH--------------HHHHHHHHHHHTTCGGGTTSBGGG-----
T ss_pred HHHHHhhhhhccccc-----------------CCCHH--------------HHHHHHHHHHHcCChHHhcCChhh-----
Confidence 9999874321 1000 00000 012356789999999888877664
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..|.|+|+++|+ ..++.++||++++|++|+
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd-~~~~~~~~d~v~~l~~G~- 206 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ-PNQVVAIANKTLLLNKQN- 206 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESC-HHHHHHHCSEEEEEETTE-
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHHHHhCCEEEEEeCCe-
Confidence 999999999999999999999999999999999999999999999987558898887765 456778999999999999
Q ss_pred EEecChhhH
Q 003389 423 VYQGPRDNV 431 (824)
Q Consensus 423 v~~G~~~~~ 431 (824)
++.|+++++
T Consensus 207 ~~~g~~~~~ 215 (253)
T 2nq2_C 207 FKFGETRNI 215 (253)
T ss_dssp EEEEEHHHH
T ss_pred EecCCHHHH
Confidence 999998776
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=388.54 Aligned_cols=258 Identities=22% Similarity=0.396 Sum_probs=196.4
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.++....++|+.++++.+++ ..+..+....+....+++++|+++.+.
T Consensus 304 ~~~~~~s~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~i~~~~v~~~y~---------------------------- 350 (578)
T 4a82_A 304 LTQSFASMDRVFQLIDEDYD-----IKNGVGAQPIEIKQGRIDIDHVSFQYN---------------------------- 350 (578)
T ss_dssp HHHHHHHHHHHHHHHTCCCS-----SCCCTTCCCCCCCSCCEEEEEEEECSC----------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCc-----ccCCCCccccCCCCCeEEEEEEEEEcC----------------------------
Confidence 35566778888888876654 111111111222334678888876421
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
.+++++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 351 ----~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~ 423 (578)
T 4a82_A 351 ----DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQD 423 (578)
T ss_dssp ----SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSS
T ss_pred ----CCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCC
Confidence 12346999999999999999999999999999999999999997 9999999999876543 4679999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+++. ||+||+.++.. +.+.++..+++...+.+. . .-.+++..||
T Consensus 424 ~~l~~~-tv~eni~~~~~-------------------------~~~~~~~~~~~~~~~~~~------~--~~~lp~g~~t 469 (578)
T 4a82_A 424 NILFSD-TVKENILLGRP-------------------------TATDEEVVEAAKMANAHD------F--IMNLPQGYDT 469 (578)
T ss_dssp CCCCSS-BHHHHHGGGCS-------------------------SCCHHHHHHHHHHTTCHH------H--HHTSTTGGGC
T ss_pred CccCcc-cHHHHHhcCCC-------------------------CCCHHHHHHHHHHhCcHH------H--HHhCcchhhh
Confidence 888865 99999988621 111122223332222111 1 2356777899
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+|+ .+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++.|++. . .+.||+
T Consensus 470 ~~~~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~-~-~~~~d~ 544 (578)
T 4a82_A 470 EVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLS-T-ITHADK 544 (578)
T ss_dssp BCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSGG-G-TTTCSE
T ss_pred hhcc-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH-H-HHcCCE
Confidence 9985 4567999999999999999999999999999999999999999999999854 689888777654 3 456999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|+++++|+++++.+
T Consensus 545 i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 545 IVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998864
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=350.79 Aligned_cols=197 Identities=24% Similarity=0.343 Sum_probs=169.9
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCCC
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~lT 261 (824)
++|+|||++|++|++++|+||||||||||||+|+|+++| . |+|.++|+++..... ++.++|++|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 589999999999999999999999999999999999987 4 999999998754322 356999999998899999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.++.. ... . ...++++++.+||++..+..++
T Consensus 90 v~e~l~~~~~-~~~---------------------~-----------------~~~~~~~l~~~~l~~~~~~~~~----- 125 (249)
T 2qi9_C 90 VWHYLTLHQH-DKT---------------------R-----------------TELLNDVAGALALDDKLGRSTN----- 125 (249)
T ss_dssp HHHHHHTTCS-STT---------------------C-----------------HHHHHHHHHHTTCGGGTTSBGG-----
T ss_pred HHHHHHHhhc-cCC---------------------c-----------------HHHHHHHHHHcCChhHhcCChh-----
Confidence 9999988521 100 0 0124568899999988887765
Q ss_pred CCCHHHHHHHHHHHHHHcCCc-------EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 342 GISGGQKKRVTTGEMLVGTAN-------VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~-------iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
.|||||||||+||++|+.+|+ +|||||||+|||+.++..+.+.|++++++ |+|+|++.|+ ..++.++||++
T Consensus 126 ~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd-~~~~~~~~d~v 203 (249)
T 2qi9_C 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHD-LNHTLRHAHRA 203 (249)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSC-HHHHHHHCSEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC-HHHHHHhCCEE
Confidence 499999999999999999999 99999999999999999999999999765 8898887655 55677899999
Q ss_pred EEEcCCeEEEecChhhH
Q 003389 415 ILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~ 431 (824)
++|++|++++.|+++++
T Consensus 204 ~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998776
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-41 Score=354.08 Aligned_cols=206 Identities=24% Similarity=0.306 Sum_probs=164.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC--cCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK--LGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~--l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~ 257 (824)
+++|+|||++|++||+++|+||||||||||+|+|+|+ ++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 5699999999999999999999999999999999998 6665 9999999998865432 23489999999999
Q ss_pred CCCCHHHHHHHhhhh-cCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCC-Cccccccc
Q 003389 258 GEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL-DICADTMV 335 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL-~~~~dt~v 335 (824)
+.+||+||+.+.... .+.. ...+ +....++++++.+|| .+..++.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~-------------------~~~~-------------~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGRE-------------------VGVA-------------EFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSC-------------------CCHH-------------HHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred cCCCHHHHHHHHHHhhcccc-------------------CCHH-------------HHHHHHHHHHHHcCCChhHhcCCc
Confidence 999999999886421 1100 0000 001235678999999 47777766
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh-cCeE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-FDDI 414 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l-fD~i 414 (824)
++ +|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+|+|+++|++ .++..+ ||++
T Consensus 141 ~~----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~-~~~~~~~~d~v 214 (250)
T 2d2e_A 141 NE----GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQ-RILNYIQPDKV 214 (250)
T ss_dssp TC----C----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSS-GGGGTSCCSEE
T ss_pred cc----CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCH-HHHHHhcCCEE
Confidence 42 3999999999999999999999999999999999999999999999965 488999887765 466667 5999
Q ss_pred EEEcCCeEEEecChhh
Q 003389 415 ILLSEGQIVYQGPRDN 430 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~ 430 (824)
++|++|++++.|+++.
T Consensus 215 ~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 215 HVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEETTEEEEEESHHH
T ss_pred EEEECCEEEEEeCHHH
Confidence 9999999999999873
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-40 Score=387.28 Aligned_cols=257 Identities=22% Similarity=0.313 Sum_probs=194.5
Q ss_pred hhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccc
Q 003389 98 QDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLV 177 (824)
Q Consensus 98 ~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~ 177 (824)
++....++|+.++++.+++ ..+..+....+.+.-.++++|+++.+.
T Consensus 307 ~~~~~s~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~i~~~~v~~~y~----------------------------- 352 (587)
T 3qf4_A 307 VRASASAKRVLEVLNEKPA-----IEEADNALALPNVEGSVSFENVEFRYF----------------------------- 352 (587)
T ss_dssp HHHHHHHHHHHHHHHCCCS-----CCCCTTCBCCSCCCCCEEEEEEEECSS-----------------------------
T ss_pred HHHHHHHHHHHHHHcCCCc-----cCCCCCccccCCCCCcEEEEEEEEEcC-----------------------------
Confidence 4456677777777776544 111111111122234578888775420
Q ss_pred cCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCC
Q 003389 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD 254 (824)
Q Consensus 178 ~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d 254 (824)
.+.+++|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++
T Consensus 353 ---~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 426 (587)
T 3qf4_A 353 ---ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQET 426 (587)
T ss_dssp ---SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSC
T ss_pred ---CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCC
Confidence 12356999999999999999999999999999999999999997 9999999999876543 46799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
.+++. ||+||+.++... .+.++..+++...+. .+. ...+++..||.
T Consensus 427 ~lf~~-tv~eni~~~~~~-------------------------~~~~~~~~~~~~~~~------~~~--i~~l~~g~~~~ 472 (587)
T 3qf4_A 427 VLFSG-TIKENLKWGRED-------------------------ATDDEIVEAAKIAQI------HDF--IISLPEGYDSR 472 (587)
T ss_dssp CCCSE-EHHHHHTTTCSS-------------------------CCHHHHHHHHHHTTC------HHH--HHTSSSGGGCE
T ss_pred cCcCc-cHHHHHhccCCC-------------------------CCHHHHHHHHHHhCc------HHH--HHhcccchhhH
Confidence 88864 999999876311 111122222222211 111 23566778888
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
+|+ .+..||||||||++|||||+.+|++|+|||||++||+.++.+|.+.|+++. .++|+|++.|++. ....||+|
T Consensus 473 ~~~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~--~~~~~d~i 547 (587)
T 3qf4_A 473 VER-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKIP--TALLADKI 547 (587)
T ss_dssp ECS-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHH--HHTTSSEE
T ss_pred hcC-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecChH--HHHhCCEE
Confidence 885 456799999999999999999999999999999999999999999999985 3789999887654 45689999
Q ss_pred EEEcCCeEEEecChhhHHH
Q 003389 415 ILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~~ 433 (824)
++|++|+++++|+++++.+
T Consensus 548 ~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 548 LVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998864
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=352.39 Aligned_cols=221 Identities=22% Similarity=0.256 Sum_probs=173.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l--~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~ 257 (824)
+++|+|||++|++|++++|+||||||||||||+|+|+. +|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 56999999999999999999999999999999999984 455 9999999998765332 23499999999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccccc
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 336 (824)
+.+||.|++.+..... . ... .. +....+ +....++++++.+||+ +..++.++
T Consensus 110 ~~~tv~e~~~~~~~~~------------~-~~~--~~-~~~~~~-----------~~~~~~~~~l~~~gl~~~~~~~~~~ 162 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAV------------R-SYR--GQ-ETLDRF-----------DFQDLMEEKIALLKMPEDLLTRSVN 162 (267)
T ss_dssp TTCBHHHHHHHHHHHH------------H-HGG--GC-CCCCHH-----------HHHHHHHHHHHHTTCCTTTTTSBTT
T ss_pred ccccHHHHHHHHHHhh------------h-hhh--cc-ccCCHH-----------HHHHHHHHHHHHcCCChhHhcCCcc
Confidence 9999999998753110 0 000 00 000000 0012356789999996 56666654
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh-cCeEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-FDDII 415 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l-fD~ii 415 (824)
. .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+|+|+++|++ .++..+ ||+++
T Consensus 163 ~----~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~-~~~~~~~~d~v~ 236 (267)
T 2zu0_C 163 V----GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQ-RILDYIKPDYVH 236 (267)
T ss_dssp T----TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSG-GGGGTSCCSEEE
T ss_pred c----CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCH-HHHHhhcCCEEE
Confidence 1 4999999999999999999999999999999999999999999999864 488988887654 456665 89999
Q ss_pred EEcCCeEEEecChhhHHHHHHHcCCC
Q 003389 416 LLSEGQIVYQGPRDNVLEFFEHMGFK 441 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~~~f~~~G~~ 441 (824)
+|++|++++.|+++++.. .+..||.
T Consensus 237 ~l~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 237 VLYQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp EEETTEEEEEECTTHHHH-HHTTTCT
T ss_pred EEECCEEEEEcCHHHHhh-hhhcchh
Confidence 999999999999988753 4555554
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=345.63 Aligned_cols=200 Identities=23% Similarity=0.357 Sum_probs=162.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|||++|++|++++|+|||||||||||++|+|++++ +|+|.++|+++..... ++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 4699999999999999999999999999999999999864 7999999998764322 357999999988875 6
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc-------CCCccccc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-------GLDICADT 333 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-------gL~~~~dt 333 (824)
||+||+.|+.. ... .++ +.++++.+ ++++..++
T Consensus 108 tv~enl~~~~~--~~~-----------------------~~~---------------~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKL--DAT-----------------------DEE---------------VIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCT--TCC-----------------------HHH---------------HHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCC--CCC-----------------------HHH---------------HHHHHHHhCCHHHHHhccccccc
Confidence 99999988521 000 000 11122233 35555666
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.++. .+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ ++|+|++.|++. .+ ..||+
T Consensus 148 ~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--~~tviivtH~~~-~~-~~~d~ 222 (260)
T 2ghi_A 148 IVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAHRLS-TI-SSAES 222 (260)
T ss_dssp EESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--TSEEEEECSSGG-GS-TTCSE
T ss_pred cccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHH-HH-HhCCE
Confidence 6653 4667999999999999999999999999999999999999999999999853 789999887754 34 46999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
+++|++|+++..|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-38 Score=398.67 Aligned_cols=258 Identities=22% Similarity=0.303 Sum_probs=208.4
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCC--CcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEI--PKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLL 174 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~--p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 174 (824)
.++....++|+.++++.+|+ +.+.. ..+... .+.+++|+|+++.++
T Consensus 379 ~~~~~~s~~ri~~~l~~~~~-----~~~~~-~~~~~~~~~~g~I~~~nvsF~Y~-------------------------- 426 (1321)
T 4f4c_A 379 LGTAQGAASGIYEVLDRKPV-----IDSSS-KAGRKDMKIKGDITVENVHFTYP-------------------------- 426 (1321)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-----SSCSS-SCCCCCCCCCCCEEEEEEEECCS--------------------------
T ss_pred HHHHHHHHHHHHHHHcCCcc-----ccccc-cccccCCCCCCcEEEEEeeeeCC--------------------------
Confidence 35566778888888876655 22111 122222 234689999887531
Q ss_pred ccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEe
Q 003389 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYIS 251 (824)
Q Consensus 175 ~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~ 251 (824)
...+.++|+|||++|+||+++||+||+|||||||+++|.|+++|. +|+|.+||+++++... ++.++||+
T Consensus 427 -----~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~ 498 (1321)
T 4f4c_A 427 -----SRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVS 498 (1321)
T ss_dssp -----SSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred -----CCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc---cCcccCCCccchhccHHHHhhcccccC
Confidence 112457999999999999999999999999999999999999997 9999999999987654 46899999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc
Q 003389 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (824)
Q Consensus 252 Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (824)
|++.++.. ||+|||.|+. |+.+.+++.++++..+.+.. +-.|++..
T Consensus 499 Q~~~Lf~~-TI~eNI~~g~-------------------------~~~~~~~v~~a~~~a~l~~~--------i~~lp~G~ 544 (1321)
T 4f4c_A 499 QEPALFNC-TIEENISLGK-------------------------EGITREEMVAACKMANAEKF--------IKTLPNGY 544 (1321)
T ss_dssp SSCCCCSE-EHHHHHHTTC-------------------------TTCCHHHHHHHHHHTTCHHH--------HHHSTTTT
T ss_pred CcceeeCC-chhHHHhhhc-------------------------ccchHHHHHHHHHHccchhH--------HHcCCCCC
Confidence 99887754 9999999862 33344566677666554332 33578899
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf 411 (824)
||.||+.. ..||||||||++||||++++|+||+||||||+||+.++..+.+.|+++.+ ++|+|++.|+.+ +.+.|
T Consensus 545 ~T~vGe~G-~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrls--~i~~a 619 (1321)
T 4f4c_A 545 NTLVGDRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRLS--TIRNA 619 (1321)
T ss_dssp SSEESSSS-CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCTT--TTTTC
T ss_pred ccEecCCC-CCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC--CCEEEEEcccHH--HHHhC
Confidence 99999754 45999999999999999999999999999999999999999999999874 789999888764 77899
Q ss_pred CeEEEEcCCeEEEecChhhHHH
Q 003389 412 DDIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 412 D~iilL~~G~iv~~G~~~~~~~ 433 (824)
|+|++|++|+|+++|+++++.+
T Consensus 620 D~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 620 DLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp SEEEEEETTEEEEEECHHHHHT
T ss_pred CEEEEeeCCeeeccCCHHHHHH
Confidence 9999999999999999999874
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-40 Score=347.67 Aligned_cols=194 Identities=21% Similarity=0.208 Sum_probs=165.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEE-EEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCA-YISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~-yv~Q~d~~~~~lTV 262 (824)
+++|+|||++|+ |++++|+||||||||||||+|+|++ |+ +|+|.++|+++.....++.++ |++|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 469999999999 9999999999999999999999999 87 999999998875421246799 99998776 8999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccccccCccCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEMRR 341 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~r 341 (824)
+||+.+....... ....++.+++.+||+ +..++.++
T Consensus 91 ~enl~~~~~~~~~--------------------------------------~~~~~~~~l~~~gl~~~~~~~~~~----- 127 (263)
T 2pjz_A 91 NDIVYLYEELKGL--------------------------------------DRDLFLEMLKALKLGEEILRRKLY----- 127 (263)
T ss_dssp HHHHHHHHHHTCC--------------------------------------CHHHHHHHHHHTTCCGGGGGSBGG-----
T ss_pred HHHHHHhhhhcch--------------------------------------HHHHHHHHHHHcCCChhHhcCChh-----
Confidence 9999886422100 011346688999998 88887766
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC-eEEEEcCC
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD-DIILLSEG 420 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD-~iilL~~G 420 (824)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++ . |+|+++|++ .++.++|| ++++|++|
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tviivtHd~-~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGILVTHEL-DMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEESCG-GGGGGCTTSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEEEEcCH-HHHHHhcCceEEEEECC
Confidence 499999999999999999999999999999999999999999999874 2 888877654 56778999 99999999
Q ss_pred eEEEecChhhHH
Q 003389 421 QIVYQGPRDNVL 432 (824)
Q Consensus 421 ~iv~~G~~~~~~ 432 (824)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999998875
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=384.17 Aligned_cols=256 Identities=23% Similarity=0.351 Sum_probs=193.4
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.++....++|+.++++.+++. +..+........-+++++|+++.
T Consensus 320 ~~~~~~s~~ri~~~l~~~~~~------~~~~~~~~~~~~~~i~~~~v~~~------------------------------ 363 (598)
T 3qf4_B 320 IQMALASAERIFEILDLEEEK------DDPDAVELREVRGEIEFKNVWFS------------------------------ 363 (598)
T ss_dssp HHHHHHHHHHHHHHTTSCCCC------CCSSCCCCCSCCCCEEEEEEECC------------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCCC------CCCCCCCCCCCCCeEEEEEEEEE------------------------------
Confidence 345667788888888765541 10111112222345777777643
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
+.+++++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 364 ---y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~ 437 (598)
T 3qf4_B 364 ---YDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQD 437 (598)
T ss_dssp ---SSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTT
T ss_pred ---CCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCC
Confidence 222356999999999999999999999999999999999999997 9999999999876543 4679999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+++ .||+||+.++.... .+ +++.+++...+ .++. .-.+++..||
T Consensus 438 ~~lf~-~tv~eni~~~~~~~----------------------~~---~~~~~~~~~~~------~~~~--~~~~~~g~~t 483 (598)
T 3qf4_B 438 TILFS-TTVKENLKYGNPGA----------------------TD---EEIKEAAKLTH------SDHF--IKHLPEGYET 483 (598)
T ss_dssp CCCCS-SBHHHHHHSSSTTC----------------------CT---THHHHHTTTTT------CHHH--HHTSTTGGGC
T ss_pred Ccccc-ccHHHHHhcCCCCC----------------------CH---HHHHHHHHHhC------CHHH--HHhccccccc
Confidence 88775 59999998852100 01 11111111111 1111 2245667788
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+|+ .+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|+|++.|++. . .+.||+
T Consensus 484 ~~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~-~-~~~~d~ 558 (598)
T 3qf4_B 484 VLTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME--GKTSIIIAHRLN-T-IKNADL 558 (598)
T ss_dssp BCHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHT--TSEEEEESCCTT-H-HHHCSE
T ss_pred hhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH-H-HHcCCE
Confidence 8884 4556999999999999999999999999999999999999999999999863 889999887765 3 456999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|+++++|+++++.+
T Consensus 559 i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 559 IIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp EEEECSSSEEECSCHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998864
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-39 Score=377.22 Aligned_cols=257 Identities=22% Similarity=0.330 Sum_probs=191.9
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.++....++|+.++++.+++. .+ .....+...-.++++|+++.+.
T Consensus 308 ~~~~~~a~~ri~~~l~~~~~~-----~~--~~~~~~~~~~~i~~~~v~~~y~---------------------------- 352 (582)
T 3b5x_A 308 FQRGMAACQTLFGLMDLETER-----DN--GKYEAERVNGEVDVKDVTFTYQ---------------------------- 352 (582)
T ss_pred HHHHHHHHHHHHHHHcCCCcC-----CC--CCCCCCCCCCeEEEEEEEEEcC----------------------------
Confidence 355667778888877765541 00 0011111133577888876531
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
.+++++|+|+|++|++||+++|+||||||||||+|+|+|+++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 353 ----~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~ 425 (582)
T 3b5x_A 353 ----GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQN 425 (582)
T ss_pred ----CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCC
Confidence 01246999999999999999999999999999999999999997 9999999998865432 4679999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+++ .||+||+.++.. .. .+.+++.+++...+. ++.++ .+++..||
T Consensus 426 ~~l~~-~tv~eni~~~~~-~~-----------------------~~~~~~~~~~~~~~l------~~~~~--~~p~g~~t 472 (582)
T 3b5x_A 426 VHLFN-DTIANNIAYAAE-GE-----------------------YTREQIEQAARQAHA------MEFIE--NMPQGLDT 472 (582)
T ss_pred Ccccc-ccHHHHHhccCC-CC-----------------------CCHHHHHHHHHHCCC------HHHHH--hCcccccc
Confidence 88886 499999988631 00 001111122211111 11112 33456788
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+|+ .+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|+|++.|++. ..+.||+
T Consensus 473 ~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~--~~~~~d~ 547 (582)
T 3b5x_A 473 VIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKTVLVIAHRLS--TIEQADE 547 (582)
T ss_pred hhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH--HHHhCCE
Confidence 8885 4567999999999999999999999999999999999999999999999863 889999887754 4467999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998753
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=371.00 Aligned_cols=201 Identities=24% Similarity=0.276 Sum_probs=166.5
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~ 259 (824)
+..+|+|||++|++||+++|+|||||||||||++|+|+++ + +|+|.++|+++....+ ++.++||+|+..+++
T Consensus 33 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~- 107 (390)
T 3gd7_A 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS- 107 (390)
T ss_dssp SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-
Confidence 3569999999999999999999999999999999999986 5 8999999999876543 367999999998887
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC--
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD-- 337 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~-- 337 (824)
+||+||+.+.... ....+.++++.++|.+..+..+..
T Consensus 108 ~tv~enl~~~~~~-----------------------------------------~~~~v~~~l~~~~L~~~~~~~p~~l~ 146 (390)
T 3gd7_A 108 GTFRKNLDPNAAH-----------------------------------------SDQEIWKVADEVGLRSVIEQFPGKLD 146 (390)
T ss_dssp EEHHHHHCTTCCS-----------------------------------------CHHHHHHHHHHTTCHHHHTTSTTGGG
T ss_pred cCHHHHhhhcccc-----------------------------------------CHHHHHHHHHHhCCHHHHhhcccccc
Confidence 6999999643110 001234567788887666655432
Q ss_pred ----ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 338 ----EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 338 ----~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
+....|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++. .+.|+|++.|+. +....||+
T Consensus 147 ~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~--e~~~~aDr 222 (390)
T 3gd7_A 147 FVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARI--EAMLECDQ 222 (390)
T ss_dssp CEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSS--GGGTTCSE
T ss_pred cccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCH--HHHHhCCE
Confidence 2234599999999999999999999999999999999999999999999864 367888876653 45677999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|+|+..|+++++..
T Consensus 223 i~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 223 FLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEEETTEEEEESSHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998853
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-39 Score=377.46 Aligned_cols=209 Identities=23% Similarity=0.365 Sum_probs=168.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-C
Confidence 56999999999999999999999999999999999999997 9999999999876432 357999999988887 4
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.++.. .. .+.+++.+++...+. ++.++ .+++..||.+|+ .+
T Consensus 432 tv~eni~~~~~-~~-----------------------~~~~~~~~~l~~~~l------~~~~~--~~p~g~~~~~~~-~~ 478 (582)
T 3b60_A 432 TVANNIAYART-EE-----------------------YSREQIEEAARMAYA------MDFIN--KMDNGLDTIIGE-NG 478 (582)
T ss_dssp BHHHHHHTTTT-SC-----------------------CCHHHHHHHHHTTTC------HHHHH--HSTTGGGSBCCT-TS
T ss_pred CHHHHHhccCC-CC-----------------------CCHHHHHHHHHHcCC------HHHHH--hccccccccccC-CC
Confidence 99999998631 00 001111222211111 11222 234567888885 45
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++.|++. ..+.||+|++|++|
T Consensus 479 ~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~--~~~~~d~i~~l~~G 554 (582)
T 3b60_A 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLS--TIEQADEIVVVEDG 554 (582)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGG--GTTTCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccHH--HHHhCCEEEEEECC
Confidence 67999999999999999999999999999999999999999999999864 789999887754 34679999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
++++.|+++++.+
T Consensus 555 ~i~~~g~~~~l~~ 567 (582)
T 3b60_A 555 IIVERGTHSELLA 567 (582)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEecCHHHHHH
Confidence 9999999998754
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=414.39 Aligned_cols=261 Identities=22% Similarity=0.270 Sum_probs=207.5
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.+......+|+.++++..++ ..+........+..-+++|+|+++.+.
T Consensus 1041 ~~~~~~a~~ri~~~l~~~~~-----~~~~~~~~~~~~~~g~I~f~nVsf~Y~---------------------------- 1087 (1321)
T 4f4c_A 1041 YAKATFAGGIIFGMLRKISK-----IDSLSLAGEKKKLYGKVIFKNVRFAYP---------------------------- 1087 (1321)
T ss_dssp HHHHHHHHHHHHHHHHCCCS-----SCTTCCCSBCCCCCCCEEEEEEEECCT----------------------------
T ss_pred HHHHHHHHHHHHHHhhCccc-----CCCccCCCCCCCCCCeEEEEEEEEeCC----------------------------
Confidence 34566777888888876655 211111111222334789999887531
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
.....++|+|||++|+|||.+||+||||||||||+++|.|+++|. +|+|.+||+++.+... ++.++||+|+
T Consensus 1088 ---~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qd 1161 (1321)
T 4f4c_A 1088 ---ERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQE 1161 (1321)
T ss_dssp ---TSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSS
T ss_pred ---CCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCC
Confidence 112346999999999999999999999999999999999999997 9999999999987654 5789999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+|.. ||||||.|+.. .++.+.+++++++...+.+.. +-.|++.+||
T Consensus 1162 p~LF~g-TIreNI~~gld-----------------------~~~~sd~ei~~Al~~a~l~~~--------I~~Lp~GldT 1209 (1321)
T 4f4c_A 1162 PTLFDC-SIAENIIYGLD-----------------------PSSVTMAQVEEAARLANIHNF--------IAELPEGFET 1209 (1321)
T ss_dssp CCCCSE-EHHHHHSSSSC-----------------------TTTSCHHHHHHHHHHTTCHHH--------HHTSTTTTCS
T ss_pred CEeeCc-cHHHHHhccCC-----------------------CCCCCHHHHHHHHHHhCChHH--------HHcCcCCCCC
Confidence 888765 99999988631 122344556666665554332 3468889999
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.||+. +..||||||||++|||||+++|+||+||||||+||+.|...|.+.|+++.+ ++|+|++.|.. ++...||+
T Consensus 1210 ~vge~-G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~--~~TvI~IAHRL--sTi~~aD~ 1284 (1321)
T 4f4c_A 1210 RVGDR-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE--GRTCIVIAHRL--NTVMNADC 1284 (1321)
T ss_dssp EETTT-SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSS--SSEEEEECSSS--STTTTCSE
T ss_pred EecCC-CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcC--CCEEEEeccCH--HHHHhCCE
Confidence 99964 456999999999999999999999999999999999999999999998764 78999987754 46788999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|+||++|+|+++|+++++++
T Consensus 1285 I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1285 IAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp EEEESSSSEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999975
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-40 Score=338.18 Aligned_cols=188 Identities=17% Similarity=0.261 Sum_probs=157.8
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 264 (824)
++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++. ..++.++||+|++.+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 7999999999999999999999999999999999999987 999999999875 23577999999999999999999
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
|+.++....+. . . + ...++++++.+||++. +..++ .||
T Consensus 98 nl~~~~~~~~~--------------------~-~--------------~-~~~~~~~l~~~gl~~~-~~~~~-----~LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV--------------------K-V--------------N-KNEIMDALESVEVLDL-KKKLG-----ELS 135 (214)
T ss_dssp HHHHHHHHTTC--------------------C-C--------------C-HHHHHHHHHHTTCCCT-TSBGG-----GSC
T ss_pred HHHHHHHhcCC--------------------c-h--------------H-HHHHHHHHHHcCCCcC-CCChh-----hCC
Confidence 99986432210 0 0 0 1134668899999877 66654 599
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++. ++|+|+++|++. ++..+||+++++ .|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999999999999999999764 789999887654 677788887755 4444
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=332.80 Aligned_cols=197 Identities=22% Similarity=0.329 Sum_probs=153.1
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
++++|+|||++|++|++++|+||||||||||||+|+|+++|+ +|+|.++| .++|++|++.+++. ||
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv 85 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TI 85 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CH
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CH
Confidence 356999999999999999999999999999999999999987 99999998 38999999888875 99
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.|+.... . . ..++..+. . .....++. +....++.+++ ....
T Consensus 86 ~enl~~~~~~~---~-~-------------------~~~~~~~~---~------~l~~~~~~--~~~~~~~~~~~-~~~~ 130 (229)
T 2pze_A 86 KENIIFGVSYD---E-Y-------------------RYRSVIKA---C------QLEEDISK--FAEKDNIVLGE-GGIT 130 (229)
T ss_dssp HHHHHTTSCCC---H-H-------------------HHHHHHHH---T------TCHHHHTT--STTGGGSCBCT-TCTT
T ss_pred HHHhhccCCcC---h-H-------------------HHHHHHHH---h------CcHHHHHh--CcccccccccC-CCCc
Confidence 99999863210 0 0 00000000 0 00111222 22333445542 3567
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF-LKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~-L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++. ++++. .++|+|+++|++ .++ ..||++++|++|+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM-EHL-KKADKILILHEGS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCH-HHH-HHCSEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCCh-HHH-HhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999997 45554 278998887764 344 4699999999999
Q ss_pred EEEecChhhHH
Q 003389 422 IVYQGPRDNVL 432 (824)
Q Consensus 422 iv~~G~~~~~~ 432 (824)
+++.|+++++.
T Consensus 207 i~~~g~~~~~~ 217 (229)
T 2pze_A 207 SYFYGTFSELQ 217 (229)
T ss_dssp EEEEECHHHHH
T ss_pred EEEECCHHHHH
Confidence 99999998774
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=333.94 Aligned_cols=195 Identities=24% Similarity=0.327 Sum_probs=153.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++| .++||+|++. ++.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHH
Confidence 56999999999999999999999999999999999999987 99999998 3899999975 5688999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccccccCccCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEMRRG 342 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~rg 342 (824)
||+.++..... ...++..++ ..+++.+++. ...++.++ +.+..
T Consensus 84 enl~~~~~~~~-----------------------~~~~~~~~~------------~~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLEE-----------------------PYYRSVIQA------------CALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCCT-----------------------THHHHHHHH------------TTCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccCH-----------------------HHHHHHHHH------------HhhHHHHHhcccccccccc-CCCCC
Confidence 99988632110 000000000 0012233332 22333343 34567
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHH---HHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLK---QMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~---~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+ ++. .++|+|+++|+.. .+ ..||++++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~-~~-~~~d~v~~l~~ 203 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMS-YL-PQVDVIIVMSG 203 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCST-TG-GGSSEEEEEET
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChH-HH-HhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999995 443 3789999887764 34 57999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|++++.|+++++.
T Consensus 204 G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 204 GKISEMGSYQELL 216 (237)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998774
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=386.49 Aligned_cols=208 Identities=26% Similarity=0.344 Sum_probs=171.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
.++|+|||++|+|||+++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+|++.+++.
T Consensus 403 ~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~- 478 (1284)
T 3g5u_A 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT- 478 (1284)
T ss_dssp CCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-
T ss_pred CcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-
Confidence 46999999999999999999999999999999999999997 9999999999876543 4679999999988865
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.|+... .+.+++.+++...+.+ +.+ -.|++..||.+|+ .+
T Consensus 479 ti~eNi~~g~~~-------------------------~~~~~~~~~~~~~~~~------~~i--~~l~~g~~t~~~~-~g 524 (1284)
T 3g5u_A 479 TIAENIRYGRED-------------------------VTMDEIEKAVKEANAY------DFI--MKLPHQFDTLVGE-RG 524 (1284)
T ss_dssp CHHHHHHHHCSS-------------------------CCHHHHHHHHHHTTCH------HHH--HHSTTGGGCCCSS-SS
T ss_pred cHHHHHhcCCCC-------------------------CCHHHHHHHHHHhCcH------HHH--HhccccccccccC-CC
Confidence 999999986321 1112233333322211 122 2466788999985 45
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
..|||||||||+|||||+.+|++|+||||||+||+.++..+.+.|+++.+ |+|+|++.|+.. +...||+|++|++|
T Consensus 525 ~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~--~i~~~d~i~vl~~G 600 (1284)
T 3g5u_A 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE--GRTTIVIAHRLS--TVRNADVIAGFDGG 600 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHT--TSEEEEECSCHH--HHTTCSEEEECSSS
T ss_pred CccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH--HHHcCCEEEEEECC
Confidence 66999999999999999999999999999999999999999999998753 789988776543 44569999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
+++++|+++++.+
T Consensus 601 ~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 601 VIVEQGNHDELMR 613 (1284)
T ss_dssp CCCCEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=327.08 Aligned_cols=195 Identities=22% Similarity=0.325 Sum_probs=149.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+++|+|||++|++|++++|+||||||||||||+|+|+++|+ +|+|.++| .++|++|++.+++. ||+
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~~-tv~ 116 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMPG-TIK 116 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCSS-BHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCcc-cHH
Confidence 46999999999999999999999999999999999999987 99999998 38999999888774 999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+. +... .. . ..+..++. .+ .+..++.+ ....++.+++ .+..|
T Consensus 117 enl~-~~~~---~~-~-------------------~~~~~~~~---~~------l~~~l~~~--~~~~~~~~~~-~~~~L 160 (290)
T 2bbs_A 117 ENII-GVSY---DE-Y-------------------RYRSVIKA---CQ------LEEDISKF--AEKDNIVLGE-GGITL 160 (290)
T ss_dssp HHHH-TTCC---CH-H-------------------HHHHHHHH---TT------CHHHHHTS--TTGGGCBC-----CCC
T ss_pred HHhh-Cccc---ch-H-------------------HHHHHHHH---hC------hHHHHHhc--cccccchhcC-ccCcC
Confidence 9997 4211 00 0 00000000 00 11122222 2233444442 35679
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFL-KQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L-~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
||||||||+|||+|+.+|++|||||||+|||+.++..+++.+ +++. .++|+|++.|++ ..+ ..||++++|++|++
T Consensus 161 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~-~~~-~~~d~i~~l~~G~i 236 (290)
T 2bbs_A 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM-EHL-KKADKILILHEGSS 236 (290)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCH-HHH-HHSSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCH-HHH-HcCCEEEEEECCeE
Confidence 999999999999999999999999999999999999999974 5553 378999887764 344 56999999999999
Q ss_pred EEecChhhHH
Q 003389 423 VYQGPRDNVL 432 (824)
Q Consensus 423 v~~G~~~~~~ 432 (824)
++.|+++++.
T Consensus 237 ~~~g~~~~l~ 246 (290)
T 2bbs_A 237 YFYGTFSELQ 246 (290)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHh
Confidence 9999998874
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=376.98 Aligned_cols=260 Identities=21% Similarity=0.305 Sum_probs=194.4
Q ss_pred hhHHHHHHHHHHHhccChHHHHHHHhhhc-cccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 98 QDKKRLLESILKIVEEDNEKFLKRIRHRT-DRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 98 ~~~~~~~~r~~~~~~~~~e~~~~~~~~~~-~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
+......+|+.++++..++ ..... ...........++++|+++.+.
T Consensus 995 ~~~~~a~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~g~i~~~~v~~~y~---------------------------- 1041 (1284)
T 3g5u_A 995 AKATVSASHIIRIIEKTPE-----IDSYSTQGLKPNMLEGNVQFSGVVFNYP---------------------------- 1041 (1284)
T ss_dssp THHHHHHHHHHHHHHSCCS-----SSSCCSSCCCTTTTSCCEEEEEEEBCCS----------------------------
T ss_pred HHHHHHHHHHHHHHcCCCc-----ccccccccccccCCCCcEEEEEEEEECC----------------------------
Confidence 4566777888888776554 11100 0111112234577888775421
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
.....++|+|||++|++||++||+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+|+
T Consensus 1042 ---~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~ 1115 (1284)
T 3g5u_A 1042 ---TRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQE 1115 (1284)
T ss_dssp ---CGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESS
T ss_pred ---CCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCC
Confidence 111246999999999999999999999999999999999999997 9999999999876543 4679999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.++ +.||+||+.++...... +.+++.+++...+. +.. .-.+++..||
T Consensus 1116 ~~l~-~~ti~eNi~~~~~~~~~-----------------------~~~~i~~~~~~~~~------~~~--i~~l~~gldt 1163 (1284)
T 3g5u_A 1116 PILF-DCSIAENIAYGDNSRVV-----------------------SYEEIVRAAKEANI------HQF--IDSLPDKYNT 1163 (1284)
T ss_dssp CCCC-SSBHHHHHTCCCSSCCC-----------------------CHHHHHHHHHHHTC------HHH--HSSTTTGGGC
T ss_pred Cccc-cccHHHHHhccCCCCCC-----------------------CHHHHHHHHHHhCc------HHH--HHhCcccccc
Confidence 8666 56999999886321111 11122222221111 111 2356788999
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.||+ .+..|||||||||+|||+|+.+|++|+|||||+|||+.++..|.+.|++.. .|+|+|++.|... .+ ..||+
T Consensus 1164 ~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~tvi~isH~l~-~i-~~~dr 1238 (1284)
T 3g5u_A 1164 RVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVIAHRLS-TI-QNADL 1238 (1284)
T ss_dssp BCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSCEEEECSCTT-GG-GSCSE
T ss_pred ccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCHH-HH-HcCCE
Confidence 9996 456799999999999999999999999999999999999999999999864 4789888777654 44 66999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|+++++|+++++.+
T Consensus 1239 i~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1239 IVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp EEEEETBEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=327.84 Aligned_cols=191 Identities=26% Similarity=0.309 Sum_probs=162.4
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~ 265 (824)
.|+++|++|++||+++|+|||||||||||++|+|+++|+ +|+|.+ .+.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE----------eeEEEEEecCccCCCCCcHHHH
Confidence 578888899999999999999999999999999999987 999986 2459999999877788999998
Q ss_pred HHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCH
Q 003389 266 LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (824)
Q Consensus 266 L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSG 345 (824)
+...... ... ....++.+|+.+||.+..++.+++ |||
T Consensus 438 ~~~~~~~-----------~~~---------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSG 474 (607)
T 3bk7_A 438 LSKIDSS-----------KLN---------------------------SNFYKTELLKPLGIIDLYDRNVED-----LSG 474 (607)
T ss_dssp HHHHHHH-----------HHH---------------------------CHHHHHHTHHHHTCTTTTTSBGGG-----CCH
T ss_pred HHhhhcc-----------CCC---------------------------HHHHHHHHHHHcCCchHhcCChhh-----CCH
Confidence 8653100 000 011345688999999888887765 999
Q ss_pred HHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC--CeEE
Q 003389 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE--GQIV 423 (824)
Q Consensus 346 GqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~--G~iv 423 (824)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..|.|+|+++| +..++..+||+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsH-d~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH-DVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECS-CHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHhCCEEEEEcCCcceEE
Confidence 99999999999999999999999999999999999999999998666888888764 56688889999999986 8889
Q ss_pred EecChhhHHH
Q 003389 424 YQGPRDNVLE 433 (824)
Q Consensus 424 ~~G~~~~~~~ 433 (824)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-33 Score=322.06 Aligned_cols=191 Identities=26% Similarity=0.314 Sum_probs=160.7
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~ 265 (824)
.|+++|++|++||+++|+|||||||||||++|+|+++|+ +|+|.+ ...++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 578888889999999999999999999999999999987 999986 2359999999877788999888
Q ss_pred HHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCH
Q 003389 266 LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (824)
Q Consensus 266 L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSG 345 (824)
+...... ... ....++.+++.+||.+..++.+++ |||
T Consensus 368 ~~~~~~~-----------~~~---------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSG 404 (538)
T 1yqt_A 368 LSKIDAS-----------KLN---------------------------SNFYKTELLKPLGIIDLYDREVNE-----LSG 404 (538)
T ss_dssp HHHHHHH-----------HHT---------------------------CHHHHHHTTTTTTCGGGTTSBGGG-----CCH
T ss_pred HHhhhcc-----------CCC---------------------------HHHHHHHHHHHcCChhhhcCChhh-----CCH
Confidence 7542100 000 011245678889998888877764 999
Q ss_pred HHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC--CeEE
Q 003389 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE--GQIV 423 (824)
Q Consensus 346 GqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~--G~iv 423 (824)
||||||+||++|+.+|++|||||||+|||..++.+|.+.|+++++..|.|+|+++ |+..++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vs-Hd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE-HDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEC-SCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe-CCHHHHHHhCCEEEEEeCCcceEe
Confidence 9999999999999999999999999999999999999999999755578888875 556788899999999986 8899
Q ss_pred EecChhhHHH
Q 003389 424 YQGPRDNVLE 433 (824)
Q Consensus 424 ~~G~~~~~~~ 433 (824)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.5e-32 Score=316.39 Aligned_cols=192 Identities=22% Similarity=0.264 Sum_probs=159.3
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~ 265 (824)
.|+++|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++| +.++|++|+....+.+||+||
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------QILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC---------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC---------eeeEeechhcccccCCCHHHH
Confidence 567778889999999999999999999999999999997 99999865 348999998776778999999
Q ss_pred HHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCH
Q 003389 266 LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (824)
Q Consensus 266 L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSG 345 (824)
+.+..... . .. ....++++++.+||.+..++.+++ |||
T Consensus 351 l~~~~~~~-~-------------------~~-----------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSG 388 (538)
T 3ozx_A 351 LENASKDA-L-------------------ST-----------------SSWFFEEVTKRLNLHRLLESNVND-----LSG 388 (538)
T ss_dssp HHHHCSST-T-------------------CT-----------------TSHHHHHTTTTTTGGGCTTSBGGG-----CCH
T ss_pred HHHhhhhc-c-------------------ch-----------------hHHHHHHHHHHcCCHHHhcCChhh-----CCH
Confidence 97742100 0 00 011245678889999888887765 999
Q ss_pred HHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC--CeEE
Q 003389 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE--GQIV 423 (824)
Q Consensus 346 GqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~--G~iv 423 (824)
||||||+||++|+.+|++|||||||+|||+.++.++.+.|+++++..+.|+|+++ |+..++..+||+|++|++ |.+.
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vs-Hdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID-HDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEEC-SCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe-CCHHHHHHhCCEEEEEeCCcceec
Confidence 9999999999999999999999999999999999999999999876788888865 556788899999999986 6666
Q ss_pred EecChhhHH
Q 003389 424 YQGPRDNVL 432 (824)
Q Consensus 424 ~~G~~~~~~ 432 (824)
..+++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777765543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.7e-32 Score=318.87 Aligned_cols=193 Identities=24% Similarity=0.240 Sum_probs=160.6
Q ss_pred cccccceeeEEeCC-----eEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCC
Q 003389 184 VRILKDVSGIVKPS-----RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHG 258 (824)
Q Consensus 184 ~~IL~~vs~~I~~G-----e~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~ 258 (824)
..+++|+|+++++| |+++|+|||||||||||++|+|+++|+ +|+. + ....++|++|+.....
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccC
Confidence 45789999999999 789999999999999999999999997 7862 1 1346899999877667
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCc
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (824)
..||+|++....+ +.. . ....++.+++.+||.+.++..+++
T Consensus 427 ~~tv~e~~~~~~~--~~~-------------------~-----------------~~~~~~~~l~~l~l~~~~~~~~~~- 467 (608)
T 3j16_B 427 PGTVRQLFFKKIR--GQF-------------------L-----------------NPQFQTDVVKPLRIDDIIDQEVQH- 467 (608)
T ss_dssp CSBHHHHHHHHCS--STT-------------------T-----------------SHHHHHHTHHHHTSTTTSSSBSSS-
T ss_pred CccHHHHHHHHhh--ccc-------------------c-----------------cHHHHHHHHHHcCChhhhcCChhh-
Confidence 7899998753211 100 0 001235678899999888877764
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++..|.|+|+++ |+..++..+||||++|+
T Consensus 468 ----LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivt-Hdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 468 ----LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVE-HDFIMATYLADKVIVFE 542 (608)
T ss_dssp ----CCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEC-SCHHHHHHHCSEEEECE
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe-CCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999765688888875 55678889999999998
Q ss_pred C--CeEEEecChhhHHH
Q 003389 419 E--GQIVYQGPRDNVLE 433 (824)
Q Consensus 419 ~--G~iv~~G~~~~~~~ 433 (824)
+ |+++..|+++++..
T Consensus 543 ~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKNAHARAPESLLT 559 (608)
T ss_dssp EETTTEEECCCCEEHHH
T ss_pred CCCCeEEecCChHHHhh
Confidence 6 99999999988864
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-31 Score=308.74 Aligned_cols=182 Identities=22% Similarity=0.238 Sum_probs=148.6
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceE---------eeCCcccCCC-----CCCceEEEE
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI---------TYCGHELNEF-----VPQRTCAYI 250 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I---------~~nG~~~~~~-----~~~~~i~yv 250 (824)
.+|+||| .|++||+++|+||||||||||||+|+|+++|+ +|++ .++|.++... ..+..++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhh
Confidence 4899999 99999999999999999999999999999987 8886 4677665321 112457899
Q ss_pred ecCCCCCCC---CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCC
Q 003389 251 SQHDLHHGE---MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (824)
Q Consensus 251 ~Q~d~~~~~---lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL 327 (824)
+|+....+. .||.|++.... ....++++|+.+||
T Consensus 112 ~q~~~~~~~~~~~~v~e~~~~~~-------------------------------------------~~~~~~~~l~~lgl 148 (538)
T 1yqt_A 112 PQYVDLIPKAVKGKVIELLKKAD-------------------------------------------ETGKLEEVVKALEL 148 (538)
T ss_dssp CSCGGGSGGGCCSBHHHHHHHHC-------------------------------------------SSSCHHHHHHHTTC
T ss_pred hhhhhhcchhhhccHHHHHhhhh-------------------------------------------HHHHHHHHHHHcCC
Confidence 987443332 37888764210 01135678999999
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhH
Q 003389 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (824)
Q Consensus 328 ~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~ 407 (824)
++..++.+++ |||||||||+||+||+.+|++|||||||++||+.++..+.+.|+++.+ .|+|+|++.| ...++
T Consensus 149 ~~~~~~~~~~-----LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsH-d~~~~ 221 (538)
T 1yqt_A 149 ENVLEREIQH-----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEH-DLAVL 221 (538)
T ss_dssp TTTTTSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECS-CHHHH
T ss_pred ChhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeC-CHHHH
Confidence 9888887764 999999999999999999999999999999999999999999999986 4888888765 56688
Q ss_pred HhhcCeEEEEcCC
Q 003389 408 YDLFDDIILLSEG 420 (824)
Q Consensus 408 ~~lfD~iilL~~G 420 (824)
..+||+|++|.+|
T Consensus 222 ~~~~dri~vl~~~ 234 (538)
T 1yqt_A 222 DYLSDIIHVVYGE 234 (538)
T ss_dssp HHHCSEEEEEEEE
T ss_pred HHhCCEEEEEcCc
Confidence 8999999999865
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-31 Score=311.54 Aligned_cols=182 Identities=24% Similarity=0.263 Sum_probs=149.2
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceE---------eeCCcccCCC-----CCCceEEEE
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI---------TYCGHELNEF-----VPQRTCAYI 250 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I---------~~nG~~~~~~-----~~~~~i~yv 250 (824)
.+|+|+| .|++||+++|+||||||||||||+|+|+++|+ +|++ .++|.++... ..+..++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC---CCccccccchhhheeCCEehhhhhhhhhhhhcceEEe
Confidence 4899999 99999999999999999999999999999987 8886 5677665321 112457888
Q ss_pred ecCCCCCC---CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCC
Q 003389 251 SQHDLHHG---EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (824)
Q Consensus 251 ~Q~d~~~~---~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL 327 (824)
+|.....+ ..||.|++.... ....++++|+.+||
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~~-------------------------------------------~~~~~~~~L~~lgL 218 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKVD-------------------------------------------EVGKFEEVVKELEL 218 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHTC-------------------------------------------CSSCHHHHHHHTTC
T ss_pred echhhhchhhccccHHHHhhhhH-------------------------------------------HHHHHHHHHHHcCC
Confidence 88643322 238999885310 01135678999999
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhH
Q 003389 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (824)
Q Consensus 328 ~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~ 407 (824)
++..|+.+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ .|.|+|++.| ...++
T Consensus 219 ~~~~~~~~~~-----LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsH-dl~~~ 291 (607)
T 3bk7_A 219 ENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEH-DLAVL 291 (607)
T ss_dssp TTGGGSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECS-CHHHH
T ss_pred CchhCCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEec-ChHHH
Confidence 9888888765 999999999999999999999999999999999999999999999986 4888888765 45578
Q ss_pred HhhcCeEEEEcCC
Q 003389 408 YDLFDDIILLSEG 420 (824)
Q Consensus 408 ~~lfD~iilL~~G 420 (824)
..+||+|++|.+|
T Consensus 292 ~~~adri~vl~~~ 304 (607)
T 3bk7_A 292 DYLSDVIHVVYGE 304 (607)
T ss_dssp HHHCSEEEEEESC
T ss_pred HhhCCEEEEECCC
Confidence 8899999999865
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-31 Score=314.58 Aligned_cols=215 Identities=23% Similarity=0.271 Sum_probs=138.6
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHH---------------------HHHhcCcCCCCC----CcceEeeCCcc
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLM---------------------LALAGKLGKDLR----ASGKITYCGHE 237 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL---------------------~~LaG~l~~~~~----~sG~I~~nG~~ 237 (824)
...+|+|||++|++||+++|+||||||||||+ ++++|+..|+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35699999999999999999999999999998 888888777521 24667777765
Q ss_pred cCCCCCCceEEEEecCCC-------------------CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCCh
Q 003389 238 LNEFVPQRTCAYISQHDL-------------------HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298 (824)
Q Consensus 238 ~~~~~~~~~i~yv~Q~d~-------------------~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~ 298 (824)
.... +++.+++|+|... .++.+||+||+.+....... ..++..
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~------ 171 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI------ 171 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccc-----------hhhhHH------
Confidence 4332 2344555555432 24578999999874321100 000000
Q ss_pred hHHHHHHHHHHhccchhhhHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHHcCCc--EeEEeCCCCCCCH
Q 003389 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN--VLYMDEISTGLDS 375 (824)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~--iLlLDEPTsGLDs 375 (824)
.+... .+.. ..-.+|+.+||.+. .++.+++ |||||||||+|||||+.+|+ +|||||||+|||+
T Consensus 172 -~~~~~-------~~~~-~~~~~l~~~gL~~~~~~~~~~~-----LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 172 -ARLIL-------REIR-DRLGFLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CH-HHHHHHHHTTCTTCCTTCBGGG-----SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -HHHHH-------HHHH-HHHHHHHHcCCchhhhcCCccc-----CCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 00000 0000 11235889999764 5777764 99999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHH
Q 003389 376 STTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (824)
Q Consensus 376 ~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~ 432 (824)
.++..+++.|+++.+ .|.|+|++.|+. .. ...||+|++| ++|++++.|+++++.
T Consensus 238 ~~~~~l~~~l~~l~~-~g~tvi~vtHd~-~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-LGNTLIVVEHDE-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH-TTCEEEEECCCH-HH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeCCH-HH-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 999999999999976 488998877654 34 5579999999 899999999998875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=307.41 Aligned_cols=185 Identities=21% Similarity=0.282 Sum_probs=151.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCC-CCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHD-LHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d-~~~~~lTV 262 (824)
+.+|+|+|++|++|++++|+||||||||||||+|+| |+| +|.+... ...++|++|+. ..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc---ceeEEEEcccccccccCCcH
Confidence 569999999999999999999999999999999995 333 4433221 12368999874 67889999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccccccCccCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEMRR 341 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~r 341 (824)
.|++.+ ...+. ...++.+|+.+||. +..++.+++
T Consensus 514 ~e~l~~--~~~~~---------------------------------------~~~v~~~L~~lgL~~~~~~~~~~~---- 548 (986)
T 2iw3_A 514 LDFVFE--SGVGT---------------------------------------KEAIKDKLIEFGFTDEMIAMPISA---- 548 (986)
T ss_dssp HHHHHT--TCSSC---------------------------------------HHHHHHHHHHTTCCHHHHHSBGGG----
T ss_pred HHHHHH--hhcCH---------------------------------------HHHHHHHHHHcCCChhhhcCCccc----
Confidence 999975 11110 01245688999995 667777765
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|+|+|++.| ...++.++||+|++|++|+
T Consensus 549 -LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSH-dl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 549 -LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISH-DSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECS-CHHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEEC-CHHHHHHhCCEEEEEECCe
Confidence 999999999999999999999999999999999999999999988 3788888755 5667889999999999999
Q ss_pred EE-EecChhhHHH
Q 003389 422 IV-YQGPRDNVLE 433 (824)
Q Consensus 422 iv-~~G~~~~~~~ 433 (824)
++ +.|+.+++..
T Consensus 623 iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 623 LRKYKGNFTEFVK 635 (986)
T ss_dssp EEEEESCHHHHHH
T ss_pred eecCCCCHHHHHh
Confidence 97 7899887654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-29 Score=302.09 Aligned_cols=106 Identities=26% Similarity=0.270 Sum_probs=90.3
Q ss_pred HHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHHcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 003389 319 DYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394 (824)
Q Consensus 319 ~~iL~~lgL~~-~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p---~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~ 394 (824)
.+.++.+||.. ..+..++ .|||||||||+|||||+.+| ++|||||||+|||+.++.+|++.|+++++ .|.
T Consensus 524 ~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g~ 597 (670)
T 3ux8_A 524 LETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGD 597 (670)
T ss_dssp HHHHHHTTCTTSBTTCCGG-----GCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcCCchhhccCCch-----hCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCC
Confidence 34677889864 3455554 59999999999999999886 59999999999999999999999999986 488
Q ss_pred EEEEEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHH
Q 003389 395 TMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (824)
Q Consensus 395 tvIisi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~ 432 (824)
|+|++.|+. .. ...||+|++| ++|++++.|+++++.
T Consensus 598 tvi~vtHd~-~~-~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 598 TVLVIEHNL-DV-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp EEEEECCCH-HH-HTTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred EEEEEeCCH-HH-HHhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 999887654 34 4679999999 899999999999874
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-30 Score=313.01 Aligned_cols=234 Identities=24% Similarity=0.303 Sum_probs=160.1
Q ss_pred HhhhcccccCccc-ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEE
Q 003389 170 ALGLLHLVPSKKR-SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCA 248 (824)
Q Consensus 170 ~l~~~~~~~~~~~-~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~ 248 (824)
++.+.++...+.+ .+++|+|||++|++|++++|+||||||||||||+|+|+++|+ +|+|.++|. ..++
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~--------~~I~ 739 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN--------CRIA 739 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT--------CCEE
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc--------cceE
Confidence 3555666555543 357999999999999999999999999999999999999997 999999863 2489
Q ss_pred EEecCCCC----CCCCCHHHHHHHhhhhcCCc--------------hh------------------------------hH
Q 003389 249 YISQHDLH----HGEMTVRETLDFSGRCLGVG--------------TR------------------------------YE 280 (824)
Q Consensus 249 yv~Q~d~~----~~~lTV~E~L~f~a~~~~~~--------------~~------------------------------~~ 280 (824)
|++|+..+ ..+.|++|++.+.... +.. .+ ++
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~-g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWRFQT-GEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHHTTT-SSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred eeccchhhhhhcccccCHHHHHHHHhhc-cchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 99998532 2356999998763210 000 00 00
Q ss_pred --------------HHHHhHHHHHhcCCCCChhH-HHHHH---------HHHH--hccchhhhHHHHHHHcCCCcc--cc
Q 003389 281 --------------LLAELSRREKQAGIKPDPEI-DAFMK---------AVAV--AGQETSLVTDYVLKILGLDIC--AD 332 (824)
Q Consensus 281 --------------~~~~~~~~e~~~~i~~~~~~-~~~~~---------~~~~--~~~~~~~~~~~iL~~lgL~~~--~d 332 (824)
....++..+. ...+..+. ..+.+ +... ........++.+|+.+||... .+
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en--~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~ 896 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDN--AWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSH 896 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGC--EEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred hhhhhhhhhhcccccccccchhhh--hhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcC
Confidence 0000000000 00000000 00000 0000 011123456789999999753 46
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
..++ +|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|+|+++| ...++.++||
T Consensus 897 ~~~~-----~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIiISH-D~e~v~~l~D 966 (986)
T 2iw3_A 897 SRIR-----GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIIITH-SAEFTKNLTE 966 (986)
T ss_dssp SCGG-----GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEEECS-CHHHHTTTCC
T ss_pred CCcc-----ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEEEEC-CHHHHHHhCC
Confidence 6655 49999999999999999999999999999999999999999988764 568777654 5567788999
Q ss_pred eEEEEcCCeEEEecC
Q 003389 413 DIILLSEGQIVYQGP 427 (824)
Q Consensus 413 ~iilL~~G~iv~~G~ 427 (824)
++++|.+|+++..|+
T Consensus 967 rVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 967 EVWAVKDGRMTPSGH 981 (986)
T ss_dssp EEECCBTTBCCC---
T ss_pred EEEEEECCEEEEeCC
Confidence 999999999988774
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-29 Score=289.76 Aligned_cols=175 Identities=22% Similarity=0.217 Sum_probs=136.6
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceE-----------eeCCcccCCCC-----CCceEEEEecCCCCC
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI-----------TYCGHELNEFV-----PQRTCAYISQHDLHH 257 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I-----------~~nG~~~~~~~-----~~~~i~yv~Q~d~~~ 257 (824)
+++||+++|+||||||||||||+|+|+++|+ +|+| .++|.++.... ....+....|.....
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 4599999999999999999999999999997 8998 67887653211 112244444432221
Q ss_pred ---CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 258 ---GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 258 ---~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
...||+|++... +....++++++.+||.+..|+.
T Consensus 99 ~~~~~~~v~~~l~~~-------------------------------------------~~~~~~~~~l~~l~l~~~~~~~ 135 (538)
T 3ozx_A 99 SKFLKGTVNEILTKI-------------------------------------------DERGKKDEVKELLNMTNLWNKD 135 (538)
T ss_dssp GTTCCSBHHHHHHHH-------------------------------------------CCSSCHHHHHHHTTCGGGTTSB
T ss_pred hhhccCcHHHHhhcc-------------------------------------------hhHHHHHHHHHHcCCchhhcCC
Confidence 233777654311 0012356788999999988888
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++. |...++..+||+|
T Consensus 136 ~~~-----LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~--g~tii~vs-Hdl~~~~~~~d~i 207 (538)
T 3ozx_A 136 ANI-----LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK--NKYVIVVD-HDLIVLDYLTDLI 207 (538)
T ss_dssp GGG-----CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT--TSEEEEEC-SCHHHHHHHCSEE
T ss_pred hhh-----CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC--CCEEEEEE-eChHHHHhhCCEE
Confidence 765 999999999999999999999999999999999999999999999964 78888865 4566888999999
Q ss_pred EEEcCCeE
Q 003389 415 ILLSEGQI 422 (824)
Q Consensus 415 ilL~~G~i 422 (824)
++|.+|..
T Consensus 208 ~vl~~~~~ 215 (538)
T 3ozx_A 208 HIIYGESS 215 (538)
T ss_dssp EEEEEETT
T ss_pred EEecCCcc
Confidence 99987643
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-28 Score=289.41 Aligned_cols=194 Identities=22% Similarity=0.261 Sum_probs=140.9
Q ss_pred CcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceE-----------eeCCcccCCCCC---C
Q 003389 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI-----------TYCGHELNEFVP---Q 244 (824)
Q Consensus 179 ~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I-----------~~nG~~~~~~~~---~ 244 (824)
.+......|++++ .+++||+++|+||||||||||||+|+|+++|+ +|+| .+.|.++..+.. .
T Consensus 86 ~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~---~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~ 161 (608)
T 3j16_B 86 RYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN---LGRFDDPPEWQEIIKYFRGSELQNYFTKMLE 161 (608)
T ss_dssp ECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred EECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC---CceEecccchhhhhheecChhhhhhhhHHHH
Confidence 3333344677777 68999999999999999999999999999997 8988 344443321100 0
Q ss_pred ce--EEEEecCCCCC------CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhh
Q 003389 245 RT--CAYISQHDLHH------GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSL 316 (824)
Q Consensus 245 ~~--i~yv~Q~d~~~------~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~ 316 (824)
+. ..+.+|....+ +..++.+.+... ......
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-----------------------------------------~~~~~~ 200 (608)
T 3j16_B 162 DDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR-----------------------------------------MEKSPE 200 (608)
T ss_dssp TSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH-----------------------------------------CCSCHH
T ss_pred HhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh-----------------------------------------hhhHHH
Confidence 11 12233321110 111233322110 011123
Q ss_pred hHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 003389 317 VTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396 (824)
Q Consensus 317 ~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tv 396 (824)
.++++++.+||.+..|+.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .|.|+
T Consensus 201 ~~~~~l~~~gl~~~~~~~~~~-----LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tv 274 (608)
T 3j16_B 201 DVKRYIKILQLENVLKRDIEK-----LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYV 274 (608)
T ss_dssp HHHHHHHHHTCTGGGGSCTTT-----CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEE
T ss_pred HHHHHHHHcCCcchhCCChHH-----CCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEE
Confidence 467789999999988888765 999999999999999999999999999999999999999999999976 47887
Q ss_pred EEEEccCchhHHhhcCeEEEEcCCeEEE
Q 003389 397 IVALLQPAPETYDLFDDIILLSEGQIVY 424 (824)
Q Consensus 397 Iisi~q~~~e~~~lfD~iilL~~G~iv~ 424 (824)
|++. |...++..+||+|++|.+|..+|
T Consensus 275 i~vt-Hdl~~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 275 ICVE-HDLSVLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp EEEC-SCHHHHHHHCSEEEEEESCTTTE
T ss_pred EEEe-CCHHHHHHhCCEEEEEeCCcccc
Confidence 7764 56678899999999998876544
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-26 Score=277.83 Aligned_cols=108 Identities=26% Similarity=0.334 Sum_probs=90.5
Q ss_pred HHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 003389 318 TDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394 (824)
Q Consensus 318 ~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p---~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~ 394 (824)
+..+|+.+||.... +| +....|||||||||.||++|+.+| ++|||||||+|||+.+...+++.|+++++ .|.
T Consensus 785 ~~~~L~~vGL~~~~---lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~ 859 (916)
T 3pih_A 785 TLQVLHDVGLGYVK---LG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGN 859 (916)
T ss_dssp HHHHHHHTTGGGSB---TT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHcCCchhh---cc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCC
Confidence 45688899996421 22 234569999999999999999865 79999999999999999999999999986 488
Q ss_pred EEEEEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHH
Q 003389 395 TMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (824)
Q Consensus 395 tvIisi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~ 432 (824)
|+|++.|+. . +...||+|++| ++|+|++.|+++++.
T Consensus 860 TVIvI~HdL-~-~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 860 TVIVIEHNL-D-VIKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp EEEEECCCH-H-HHTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred EEEEEeCCH-H-HHHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 988876654 3 44669999999 899999999999985
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-27 Score=282.51 Aligned_cols=106 Identities=26% Similarity=0.274 Sum_probs=92.0
Q ss_pred HHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHHcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 003389 319 DYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394 (824)
Q Consensus 319 ~~iL~~lgL~~-~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p---~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~ 394 (824)
..+|+.+||.. ..+..++ .|||||||||+||++|+.+| ++|||||||+|||+.+..++++.|+++++ .|.
T Consensus 826 ~~~L~~~gL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~ 899 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGD 899 (972)
T ss_dssp HHHHHHTTCSSSBTTCCGG-----GCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcCCCcccccCchh-----hCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC
Confidence 45789999986 5666665 49999999999999999764 99999999999999999999999999986 488
Q ss_pred EEEEEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHH
Q 003389 395 TMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (824)
Q Consensus 395 tvIisi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~ 432 (824)
|||++.|+ ..+ ...||+|++| ++|++++.|+++++.
T Consensus 900 TVIvisHd-l~~-i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 900 TVLVIEHN-LDV-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EEEEECCC-HHH-HTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred EEEEEcCC-HHH-HHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 98887665 444 4689999999 789999999998875
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-29 Score=285.39 Aligned_cols=185 Identities=12% Similarity=0.068 Sum_probs=145.6
Q ss_pred cceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcc-e-EeeCCcccCCCCCCceEEEEecCCC---CCCCCCH
Q 003389 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG-K-ITYCGHELNEFVPQRTCAYISQHDL---HHGEMTV 262 (824)
Q Consensus 188 ~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG-~-I~~nG~~~~~~~~~~~i~yv~Q~d~---~~~~lTV 262 (824)
.++|+.+++|++++|+||||||||||+|+|+|++.|+ +| + |.+||. +++.++|++|+.. +.+.+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 4899999999999999999999999999999999886 99 9 999982 2567899999874 4556899
Q ss_pred HHHHHHhhhhc-CCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 263 RETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 263 ~E~L~f~a~~~-~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
+||+ |+.... +... ...+..+++.+||++..+ + .
T Consensus 200 ~eni-~~~~~~~~~~~-------------------------------------~~~~~~ll~~~gl~~~~~--~-----~ 234 (460)
T 2npi_A 200 QLPT-WGQSLTSGATL-------------------------------------LHNKQPMVKNFGLERINE--N-----K 234 (460)
T ss_dssp TCTT-CSCBCBSSCCS-------------------------------------SCCBCCEECCCCSSSGGG--C-----H
T ss_pred hhhh-cccccccCcch-------------------------------------HHHHHHHHHHhCCCcccc--h-----h
Confidence 9998 754321 1000 001123566788877665 3 3
Q ss_pred CCCHHHHHHHHHHHH--HHcCCcE----eEEeC-CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCch-----hHHh
Q 003389 342 GISGGQKKRVTTGEM--LVGTANV----LYMDE-ISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP-----ETYD 409 (824)
Q Consensus 342 gLSGGqrqRvsIA~a--Lv~~p~i----LlLDE-PTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~-----e~~~ 409 (824)
.|||||||||+||++ |+.+|++ ||||| ||+|||+. ...+.+.+++ .+.|+|+++|++.+ ++.+
T Consensus 235 ~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~ 309 (460)
T 2npi_A 235 DLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKT 309 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHH
Confidence 599999999999999 9999999 99999 99999999 4444444443 46788888887652 5558
Q ss_pred hcCe-----EEEEc-CCeEEEecChhhHH
Q 003389 410 LFDD-----IILLS-EGQIVYQGPRDNVL 432 (824)
Q Consensus 410 lfD~-----iilL~-~G~iv~~G~~~~~~ 432 (824)
+||+ |++|. +|+++ .|+++++.
T Consensus 310 ~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 310 FGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred hcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 9999 99999 99999 99987653
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=277.72 Aligned_cols=108 Identities=22% Similarity=0.274 Sum_probs=93.1
Q ss_pred hHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHHcC---CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 003389 317 VTDYVLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGT---ANVLYMDEISTGLDSSTTFQICKFLKQMVHIL 392 (824)
Q Consensus 317 ~~~~iL~~lgL~~~-~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~---p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~ 392 (824)
.+..+|+.+||... .+..+. .|||||||||.||++|+.+ |++|||||||+|||+.+..+|.+.|+++++ .
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~ 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPAT-----ELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-A 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGG-----GCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCcccccCCcc-----cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C
Confidence 35678999999763 455554 5999999999999999996 799999999999999999999999999986 4
Q ss_pred CcEEEEEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHH
Q 003389 393 DVTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (824)
Q Consensus 393 ~~tvIisi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~ 432 (824)
|.|||++.|+ ..++ ..||+|++| ++|++++.|+++++.
T Consensus 783 G~tVIvisHd-l~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 GNTVIAVEHK-MQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp TCEEEEECCC-HHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CCEEEEEcCC-HHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 8888887654 5566 889999999 799999999998874
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=251.54 Aligned_cols=236 Identities=15% Similarity=0.124 Sum_probs=148.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC-----------------------------------CCCc
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-----------------------------------LRAS 228 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~-----------------------------------~~~s 228 (824)
..+|+++|+.+++| +++|+|||||||||||++|+++..+. ..-+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 45899999999999 99999999999999999998776421 0127
Q ss_pred ceEeeCCcccCCCCC----CceEEEEecCCCCCCCCCHHHHHHHhhhhcCCc-h----hhHHHHHhHHHHHhcCCCCCh-
Q 003389 229 GKITYCGHELNEFVP----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVG-T----RYELLAELSRREKQAGIKPDP- 298 (824)
Q Consensus 229 G~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~-~----~~~~~~~~~~~e~~~~i~~~~- 298 (824)
|++.+||++++.... ...+++++|++.++.. +..+...|--...... . .+..+....+.... ..+...
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~-l~~~~~~ 204 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLER-LQASESS 204 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH-C------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH-HHhhhhh
Confidence 889999998763211 2348999998765433 5554444422111000 0 00001111000000 000000
Q ss_pred ----------hHHHHHH----HHHH-------hccchhhhHHHHHHHcCCCccc----------------cc---cccC-
Q 003389 299 ----------EIDAFMK----AVAV-------AGQETSLVTDYVLKILGLDICA----------------DT---MVGD- 337 (824)
Q Consensus 299 ----------~~~~~~~----~~~~-------~~~~~~~~~~~iL~~lgL~~~~----------------dt---~vg~- 337 (824)
..+...+ .... ....-...+...++.++++... +. .+..
T Consensus 205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 284 (415)
T 4aby_A 205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN 284 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence 0000000 0000 0001112345566677765411 00 1110
Q ss_pred -----ccCCC-CCHHHHHHHHHHHHHHcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh
Q 003389 338 -----EMRRG-ISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (824)
Q Consensus 338 -----~~~rg-LSGGqrqRvsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~ 409 (824)
...+. +||||||||+||++|+.+| ++|||||||+|||+.+...+.+.|+++++ +.|+|+++|++ ++.+
T Consensus 285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~--~~~vi~itH~~--~~~~ 360 (415)
T 4aby_A 285 PGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLA--QIAA 360 (415)
T ss_dssp SSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCH--HHHT
T ss_pred CCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEeCcH--HHHh
Confidence 11122 6999999999999999999 99999999999999999999999999973 78999987764 5678
Q ss_pred hcCeEEEE----cCCeEEEec
Q 003389 410 LFDDIILL----SEGQIVYQG 426 (824)
Q Consensus 410 lfD~iilL----~~G~iv~~G 426 (824)
.||++++| .+|+++...
T Consensus 361 ~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 361 RAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TCSEEEEEEEEEETTEEEEEE
T ss_pred hcCeEEEEEEeccCCceEEEE
Confidence 99999999 999987653
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-25 Score=228.37 Aligned_cols=149 Identities=17% Similarity=0.201 Sum_probs=101.3
Q ss_pred cCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccC--CCCCCceEEEEecCCC
Q 003389 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN--EFVPQRTCAYISQHDL 255 (824)
Q Consensus 178 ~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~--~~~~~~~i~yv~Q~d~ 255 (824)
++..+++.+|+|| ++|++++|+|||||||||||++|+|+ +|+ +|+|.. .++. ....++.++|++|++
T Consensus 7 pk~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~--~~~~~~~~~~~~~ig~v~q~~- 75 (208)
T 3b85_A 7 PKTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSR--IILTRPAVEAGEKLGFLPGTL- 75 (208)
T ss_dssp CCSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSE--EEEEECSCCTTCCCCSSCC---
T ss_pred cCCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeee--EEecCCchhhhcceEEecCCH-
Confidence 3444556799996 89999999999999999999999999 886 898843 2221 112246799999974
Q ss_pred CCCCCCHHHHH-HHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 256 HHGEMTVRETL-DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 256 ~~~~lTV~E~L-~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
+||+ .+..... ..+. .. .....++++++. |
T Consensus 76 -------~enl~~~~~~~~---------~~~~------~~------------------~~~~~~~~~l~~-g-------- 106 (208)
T 3b85_A 76 -------NEKIDPYLRPLH---------DALR------DM------------------VEPEVIPKLMEA-G-------- 106 (208)
T ss_dssp -----------CTTTHHHH---------HHHT------TT------------------SCTTHHHHHHHT-T--------
T ss_pred -------HHHHHHHHHHHH---------HHHH------Hh------------------ccHHHHHHHHHh-C--------
Confidence 6666 3421000 0000 00 001123334443 2
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
+ ||||||+|||+|+.+|++|||||||+| ++..+.+.|+++ + .+.|+| ++|+.
T Consensus 107 --------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd~ 158 (208)
T 3b85_A 107 --------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGDI 158 (208)
T ss_dssp --------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC-
T ss_pred --------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE-EECCH
Confidence 2 999999999999999999999999999 888999999988 4 478888 77654
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-22 Score=222.28 Aligned_cols=83 Identities=22% Similarity=0.410 Sum_probs=73.8
Q ss_pred cCCCCCHHHHHHHHHHHHHH------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 339 MRRGISGGQKKRVTTGEMLV------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv------~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
.+..|||||||||+||++|+ .+|++|||||||+|||+.+...+++.|+++.+ .|.|+|++.|+.. ..+.||
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~--~~~~~d 352 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDRE--FSEAFD 352 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHH--HHTTCS
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCC
Confidence 44569999999999999999 79999999999999999999999999999975 5889999877653 378899
Q ss_pred eEEEEcCCeEEE
Q 003389 413 DIILLSEGQIVY 424 (824)
Q Consensus 413 ~iilL~~G~iv~ 424 (824)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999874
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-22 Score=221.69 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=70.7
Q ss_pred CCCCHHHHHHHHHHHHHH----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE--
Q 003389 341 RGISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI-- 414 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv----~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i-- 414 (824)
..|||||||||+||++|+ .+|++|+|||||++||+.....+.+.|++++ .+.++|++.|++ ++.+.||++
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~--~~~~~~d~~~~ 293 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNK--IVMEAADLLHG 293 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCT--TGGGGCSEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCH--HHHhhCceEEE
Confidence 469999999999999997 6899999999999999999999999999985 367888887763 578899987
Q ss_pred EEEcCCeE-EEecChhh
Q 003389 415 ILLSEGQI-VYQGPRDN 430 (824)
Q Consensus 415 ilL~~G~i-v~~G~~~~ 430 (824)
++|.+|.. +.....++
T Consensus 294 v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEESSSCEEEEECCC--
T ss_pred EEEeCCEEEEEEEEcch
Confidence 88888754 33344443
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-24 Score=244.06 Aligned_cols=172 Identities=12% Similarity=0.098 Sum_probs=132.4
Q ss_pred cccccceeeEEeCCe--------------------EEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC
Q 003389 184 VRILKDVSGIVKPSR--------------------MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge--------------------~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~ 243 (824)
+.+|+|||+.|++|+ +++|+||||||||||+|+|+|+.+|+ +|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC--------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc----
Confidence 468999999999999 99999999999999999999999987 999999997653
Q ss_pred CceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHH
Q 003389 244 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 323 (824)
Q Consensus 244 ~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~ 323 (824)
+ .+|++|++ .++.+|+.||+.++.. ...++++++
T Consensus 109 ~--~~~v~q~~-~~~~ltv~D~~g~~~~-------------------------------------------~~~~~~~L~ 142 (413)
T 1tq4_A 109 M--ERHPYKHP-NIPNVVFWDLPGIGST-------------------------------------------NFPPDTYLE 142 (413)
T ss_dssp C--CCEEEECS-SCTTEEEEECCCGGGS-------------------------------------------SCCHHHHHH
T ss_pred e--eEEecccc-ccCCeeehHhhcccch-------------------------------------------HHHHHHHHH
Confidence 1 27899974 5778899888754310 012455778
Q ss_pred HcCCCccccccccCccCCCCCHH--HHHHHHHHHHHHc----------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH-
Q 003389 324 ILGLDICADTMVGDEMRRGISGG--QKKRVTTGEMLVG----------TANVLYMDEISTGLDSSTTFQICKFLKQMVH- 390 (824)
Q Consensus 324 ~lgL~~~~dt~vg~~~~rgLSGG--qrqRvsIA~aLv~----------~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~- 390 (824)
.++|.+.. ..+ . +||| ||||+.||++|+. +|++++|||||+|||+.++.++.+.|+++.+
T Consensus 143 ~~~L~~~~-~~~-----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 143 KMKFYEYD-FFI-----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HTTGGGCS-EEE-----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCccC-CeE-----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 88887642 222 2 9999 9999999999999 9999999999999999999999999999852
Q ss_pred ---hC----CcEEEEEEccCch-hHHhhcCeEE
Q 003389 391 ---IL----DVTMIVALLQPAP-ETYDLFDDII 415 (824)
Q Consensus 391 ---~~----~~tvIisi~q~~~-e~~~lfD~ii 415 (824)
+. ..+++++.|.... .+.+++|+|.
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 22 2455566554332 2666666653
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-25 Score=238.71 Aligned_cols=169 Identities=13% Similarity=0.167 Sum_probs=122.5
Q ss_pred hhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEE
Q 003389 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250 (824)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv 250 (824)
+...++...+. .++|+|||+.|++|++++|+||||||||||+++|+|++ +|+|. +|+
T Consensus 102 i~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~---------------~~v 158 (305)
T 2v9p_A 102 FNYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSVL---------------SFA 158 (305)
T ss_dssp HHHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEEE---------------CGG
T ss_pred EEEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceEE---------------EEe
Confidence 45556555443 56999999999999999999999999999999999997 68883 455
Q ss_pred ecCCCCCCCCCHHH-HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc
Q 003389 251 SQHDLHHGEMTVRE-TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (824)
Q Consensus 251 ~Q~d~~~~~lTV~E-~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (824)
+|++.++. .|++| |+.|.... . . .+...++.+ |++
T Consensus 159 ~q~~~lf~-~ti~~~ni~~~~~~---~---------------------~------------------~~~~~i~~~-L~~ 194 (305)
T 2v9p_A 159 NHKSHFWL-ASLADTRAALVDDA---T---------------------H------------------ACWRYFDTY-LRN 194 (305)
T ss_dssp GTTSGGGG-GGGTTCSCEEEEEE---C---------------------H------------------HHHHHHHHT-TTG
T ss_pred cCcccccc-ccHHHHhhccCccc---c---------------------H------------------HHHHHHHHH-hHc
Confidence 67655554 47776 77653110 0 0 011233333 444
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh
Q 003389 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (824)
Q Consensus 330 ~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~ 409 (824)
..| | ..|||||||| ||+|+.+|+||| |++||+.++..|.. + +| ..++.+
T Consensus 195 gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l------------tH-~~~~~~ 243 (305)
T 2v9p_A 195 ALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L------------HS-RVQTFR 243 (305)
T ss_dssp GGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G------------TT-TEEEEE
T ss_pred cCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H------------hC-CHHHHH
Confidence 444 2 4699999999 999999999999 99999999988852 1 22 223457
Q ss_pred hcCeEEEEcCCeEEEecChhhHHHHHHHc
Q 003389 410 LFDDIILLSEGQIVYQGPRDNVLEFFEHM 438 (824)
Q Consensus 410 lfD~iilL~~G~iv~~G~~~~~~~~f~~~ 438 (824)
.||+| +|++|++++.|+++++..+|.++
T Consensus 244 ~aD~i-vl~~G~iv~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 244 FEQPC-TDESGEQPFNITDADWKSFFVRL 271 (305)
T ss_dssp CCCCC-CCC---CCCCCCHHHHHHHHHHS
T ss_pred hCCEE-EEeCCEEEEeCCHHHHHHHHHHH
Confidence 89999 99999999999999986666654
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-22 Score=201.57 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHH----------------HHHHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSS----------------TTFQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~----------------t~~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
.||||||||+||++++.+|++|+|||||+|||+. ...++.+.|+++.++ |.|+|+++|.+
T Consensus 84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~ 159 (171)
T 4gp7_A 84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSP 159 (171)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCH
Confidence 6999999999999999999999999999999999 568999999988775 88999887653
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.86 E-value=7.8e-23 Score=205.00 Aligned_cols=144 Identities=14% Similarity=0.164 Sum_probs=103.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC---CCCceEEEEecCCCCCCCCCHHHHHHHhhhhcCC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF---VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 275 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~---~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~ 275 (824)
.++|+||||||||||+++|+|.+. |.++|.+..+. ..++.++|++|+. ++.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~--- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-FS-SK--- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-EE-ET---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-HH-hh---
Confidence 589999999999999999999984 44555443221 2246789999974 222222 10 00
Q ss_pred chhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC--ccccccccCccCCCCCHHHHHHHHH
Q 003389 276 GTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD--ICADTMVGDEMRRGISGGQKKRVTT 353 (824)
Q Consensus 276 ~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~--~~~dt~vg~~~~rgLSGGqrqRvsI 353 (824)
+.. +..+.. +..||||||||++|
T Consensus 63 --------------------------------------------------~~~~~~~~~~~-----~~~lSgG~~qr~~l 87 (178)
T 1ye8_A 63 --------------------------------------------------FFTSKKLVGSY-----GVNVQYFEELAIPI 87 (178)
T ss_dssp --------------------------------------------------TCCCSSEETTE-----EECHHHHHHHHHHH
T ss_pred --------------------------------------------------cCCcccccccc-----ccCcCHHHHHHHHH
Confidence 000 112233 34599999999999
Q ss_pred HHH-----HHcCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEc--cCchhHHhhcCeEEEEcCCeEEE
Q 003389 354 GEM-----LVGTANVLYMDE--ISTGLDSSTTFQICKFLKQMVHILDVTMIVALL--QPAPETYDLFDDIILLSEGQIVY 424 (824)
Q Consensus 354 A~a-----Lv~~p~iLlLDE--PTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~--q~~~e~~~lfD~iilL~~G~iv~ 424 (824)
|++ ++.+|++|+||| ||++||+.....+.+.|++ .+.|+|+++| |+.+.+..++|+ .+|+++.
T Consensus 88 a~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 88 LERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 996 999999999999 9999999999999888875 3677888887 677788888987 5567665
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-22 Score=217.30 Aligned_cols=175 Identities=14% Similarity=0.214 Sum_probs=133.5
Q ss_pred ccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---------CCceEEEEecCCC-C
Q 003389 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---------PQRTCAYISQHDL-H 256 (824)
Q Consensus 187 L~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---------~~~~i~yv~Q~d~-~ 256 (824)
++++|+.+++|++++|+||||||||||++.|+|+++|. +|+|.++|.+..... .+..++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 46789999999999999999999999999999999886 899999998864321 1235899999988 8
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++.+||+|++.++.. .+. + ..+++.+|+.+..+..++
T Consensus 167 ~~~~~v~e~l~~~~~-~~~---------------------d---------------------~~lldt~gl~~~~~~~~~ 203 (302)
T 3b9q_A 167 KAATVLSKAVKRGKE-EGY---------------------D---------------------VVLCDTSGRLHTNYSLME 203 (302)
T ss_dssp CHHHHHHHHHHHHHH-TTC---------------------S---------------------EEEECCCCCSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHH-cCC---------------------c---------------------chHHhcCCCCcchhHHHH
Confidence 888999999987531 000 0 013456788776666665
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCc--------hh
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTAN--VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA--------PE 406 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~--iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~--------~e 406 (824)
+ || |||++||++|+.+|+ +|+|| ||+|||+... ++++.+..+.|+|+++|-+. ..
T Consensus 204 e-----LS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~ 268 (302)
T 3b9q_A 204 E-----LI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSV 268 (302)
T ss_dssp H-----HH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHH
T ss_pred H-----HH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheeh
Confidence 4 99 999999999999999 99999 9999999854 34555445888888877332 22
Q ss_pred HHhhcCeEEEEcCCeE
Q 003389 407 TYDLFDDIILLSEGQI 422 (824)
Q Consensus 407 ~~~lfD~iilL~~G~i 422 (824)
.....+.|.++..|+.
T Consensus 269 ~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 269 VEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHHCCCEEEEeCCCC
Confidence 3345678888888864
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.1e-22 Score=211.33 Aligned_cols=146 Identities=14% Similarity=0.201 Sum_probs=92.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchh
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 278 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~ 278 (824)
.++|+||||||||||+|+|+|...|+ +|+|.++|+++......+.++|++|++.+++.+||.||+.|+........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH-
Confidence 47999999999999999999999987 99999999987654445789999999999999999999988754321100
Q ss_pred hHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHH
Q 003389 279 YELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358 (824)
Q Consensus 279 ~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv 358 (824)
...+.. .++ ....+..++ .|||||||||++||+++
T Consensus 80 ------------------~~~i~~------------------~~~----~~~~~~~~~-----~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 80 ------------------WEPIEK------------------YIN----EQYEKFLKE-----EVNIARKKRIPDTRVHC 114 (270)
T ss_dssp ------------------SHHHHH------------------HHH----HHHHHHHHH-----HSCTTCCSSCCCCSCCE
T ss_pred ------------------HHHHHH------------------HHH----HHHHhhhHH-----hcCcccchhhhhheeee
Confidence 000111 111 122233333 49999999999999987
Q ss_pred cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEcc
Q 003389 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (824)
Q Consensus 359 ~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q 402 (824)
. ++|+|||+.|||+.. .+.++++.+. .++|++++.
T Consensus 115 ~---lllldep~~gL~~lD----~~~l~~L~~~--~~vI~Vi~K 149 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD----LEFMKHLSKV--VNIIPVIAK 149 (270)
T ss_dssp E---EEEECCCSSSCCHHH----HHHHHHHHTT--SEEEEEETT
T ss_pred e---eEEEecCCCcCCHHH----HHHHHHHHhc--CcEEEEEec
Confidence 6 999999999999987 4556666542 678777654
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-22 Score=224.37 Aligned_cols=191 Identities=16% Similarity=0.140 Sum_probs=145.0
Q ss_pred hhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCc---ccCCC------
Q 003389 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH---ELNEF------ 241 (824)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~---~~~~~------ 241 (824)
+...++...+..+..+|+++ +.|.+|++++|+|||||||||||++|+|+.+++ +|.|.++|+ ++.++
T Consensus 132 l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 132 LQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp TTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTH
T ss_pred eEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhcc
Confidence 44555655554456799999 999999999999999999999999999999887 999999998 55432
Q ss_pred --CCCceEEEEecC-CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhH
Q 003389 242 --VPQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVT 318 (824)
Q Consensus 242 --~~~~~i~yv~Q~-d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 318 (824)
..++.++|++|+ +..++.+||.+|+.+.++... .+ +.+
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~--------------~~--------------------~~~----- 248 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFR--------------DR--------------------GQH----- 248 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHH--------------TT--------------------TCE-----
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHH--------------hC--------------------CCC-----
Confidence 124789999995 556778899999988653210 00 000
Q ss_pred HHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH---hCCc-
Q 003389 319 DYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH---ILDV- 394 (824)
Q Consensus 319 ~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~---~~~~- 394 (824)
++ ...|. ...+|+|| |||+|| +.+|++ |+|||+.+...+.+.++++.+ ..|.
T Consensus 249 --v~------~~ld~------l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~Gsi 304 (438)
T 2dpy_A 249 --VL------LIMDS------LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSI 304 (438)
T ss_dssp --EE------EEEEC------HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEE
T ss_pred --HH------HHHHh------HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcc
Confidence 00 00111 23499999 999999 888887 999999999999999999875 2253
Q ss_pred ----EEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhH
Q 003389 395 ----TMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 395 ----tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~ 431 (824)
|+++..|+.. ..+||++++|.+|+++..|++.++
T Consensus 305 T~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 305 TAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp EEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred cceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHHHc
Confidence 6666655544 567999999999999999987765
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-21 Score=211.91 Aligned_cols=174 Identities=14% Similarity=0.210 Sum_probs=133.9
Q ss_pred cceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---------CCceEEEEecCCC-CC
Q 003389 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---------PQRTCAYISQHDL-HH 257 (824)
Q Consensus 188 ~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---------~~~~i~yv~Q~d~-~~ 257 (824)
+++|+.+++|++++|+||||||||||++.|+|++++. +|+|.++|.++.... .+..++|++|++. .+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4689999999999999999999999999999999886 899999998864321 1245899999988 88
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||+|++.++.. .+. + ..+++.+|+.+..+..+.
T Consensus 225 p~~tv~e~l~~~~~-~~~---------------------d---------------------~~lldt~Gl~~~~~~~~~- 260 (359)
T 2og2_A 225 AATVLSKAVKRGKE-EGY---------------------D---------------------VVLCDTSGRLHTNYSLME- 260 (359)
T ss_dssp HHHHHHHHHHHHHH-TTC---------------------S---------------------EEEEECCCCSSCCHHHHH-
T ss_pred hhhhHHHHHHHHHh-CCC---------------------H---------------------HHHHHhcCCChhhhhHHH-
Confidence 88999999987531 000 0 013456777776666655
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCc--------hhH
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTAN--VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA--------PET 407 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~--iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~--------~e~ 407 (824)
.|| |||+.||++|+.+|+ +|+|| ||+|||+.+.. +++.+..+.|+|+++|-+. ...
T Consensus 261 ----eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~ 326 (359)
T 2og2_A 261 ----ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVV 326 (359)
T ss_dssp ----HHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHH
T ss_pred ----HHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHH
Confidence 489 999999999999999 99999 99999998653 4454445888888877331 223
Q ss_pred HhhcCeEEEEcCCeE
Q 003389 408 YDLFDDIILLSEGQI 422 (824)
Q Consensus 408 ~~lfD~iilL~~G~i 422 (824)
....+.|..+..|+.
T Consensus 327 ~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 327 EELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHCCCEEEEECSSS
T ss_pred HHhCCCEEEEeCCCC
Confidence 355678888888864
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.7e-23 Score=211.45 Aligned_cols=178 Identities=10% Similarity=0.061 Sum_probs=113.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
..+++| .+|++|++++|+||||||||||+|+|+|+++. +.+.+.+.+.+... ..++.++|++|+...++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 457888 69999999999999999999999999999852 23333333322211 1235689999998778888888
Q ss_pred HHHHHhhhh------cCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHH------HHHcCCCccc
Q 003389 264 ETLDFSGRC------LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYV------LKILGLDICA 331 (824)
Q Consensus 264 E~L~f~a~~------~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i------L~~lgL~~~~ 331 (824)
+++.+.... ++.. +.+ .+ ..+++. ++.+|+.+..
T Consensus 83 ~~l~~~~~~~~n~~~~g~~----------~~~----------~~--------------~~~~~~~~~~~~l~~~gl~~~~ 128 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTL----------AQP----------VR--------------AAAATGVPVLIEVDLAGARAIK 128 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEE----------HHH----------HH--------------HHHHHTCCEEEECCHHHHHHHH
T ss_pred CCceeehhhcCchhhcCCc----------HHH----------HH--------------HHHHcCCeEEEEeCHHHHHHHH
Confidence 876432211 1110 000 00 011111 2334444434
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCC----CHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhH
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGL----DSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGL----Ds~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~ 407 (824)
+..++ .|| +|+.+|++++|||||+|+ |+..+.++.+.++++.+..+.|+|++. |...++
T Consensus 129 ~~~~~-----~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vt-Hdl~~~ 191 (207)
T 1znw_A 129 KTMPE-----AVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVN-RRLESA 191 (207)
T ss_dssp HHCTT-----SEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEEC-SSHHHH
T ss_pred HhcCC-----cEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEEC-CCHHHH
Confidence 44333 366 899999999999999998 788999999999999865678888875 567789
Q ss_pred HhhcCeEEEEc
Q 003389 408 YDLFDDIILLS 418 (824)
Q Consensus 408 ~~lfD~iilL~ 418 (824)
..+||+|++|.
T Consensus 192 ~~~~d~i~~l~ 202 (207)
T 1znw_A 192 CAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHhc
Confidence 99999999985
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-23 Score=214.46 Aligned_cols=171 Identities=13% Similarity=0.082 Sum_probs=107.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
..-|+|||++|++|++++|+||||||||||+++|+|++ | |+|.+ |.++....+ ++.++|++|++..++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34799999999999999999999999999999999987 3 88999 776543222 3568999998655543
Q ss_pred CCH-HHHHHH---hhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccc
Q 003389 260 MTV-RETLDF---SGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (824)
Q Consensus 260 lTV-~E~L~f---~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (824)
++. .+++.+ ...+++. + ...++++++...+ ..+
T Consensus 83 ~~~~~~~l~~~~~~~~~~g~--------------------~------------------~~~i~~~l~~~~~-----~il 119 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANNFYGT--------------------L------------------KSEYDKAKEQNKI-----CLF 119 (218)
T ss_dssp HHHTTCEEEEEEETTEEEEE--------------------E------------------HHHHHHHHHTTCE-----EEE
T ss_pred hhhccchhhhhhcccccCCC--------------------c------------------HHHHHHHHhCCCc-----EEE
Confidence 321 111111 0111110 0 0012233333221 111
Q ss_pred cCccCCCCCHHHHHHHHH-----HHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh
Q 003389 336 GDEMRRGISGGQKKRVTT-----GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsI-----A~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l 410 (824)
. ..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.|++..+. .+ +.| ...
T Consensus 120 ~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~--~~----~~h-----~~~ 184 (218)
T 1z6g_A 120 E----MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE--LH----EAN-----LLN 184 (218)
T ss_dssp E----ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHH--HH----HHT-----TSC
T ss_pred E----ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HH----hhc-----ccC
Confidence 1 3499999999999 88999999999999999999999999999999887653 33 112 145
Q ss_pred cCeEEEEcC
Q 003389 411 FDDIILLSE 419 (824)
Q Consensus 411 fD~iilL~~ 419 (824)
||.|+++++
T Consensus 185 ~d~iiv~~~ 193 (218)
T 1z6g_A 185 FNLSIINDD 193 (218)
T ss_dssp CSEEEECSS
T ss_pred CCEEEECCC
Confidence 788877754
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=191.17 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=74.1
Q ss_pred CccCC-CCCHHHHHHHHHHHHHH---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh
Q 003389 337 DEMRR-GISGGQKKRVTTGEMLV---------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (824)
Q Consensus 337 ~~~~r-gLSGGqrqRvsIA~aLv---------~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e 406 (824)
+..++ .+|||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|+++| +. +
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th-~~-~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTE-LA-P 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESS-CC-T
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEe-cc-c
Confidence 33455 69999999999999999 8999999999999999999999999998763 46666554 43 3
Q ss_pred HHhhcCeEEEEcCCeEEEecChhhH
Q 003389 407 TYDLFDDIILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 407 ~~~lfD~iilL~~G~iv~~G~~~~~ 431 (824)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 7999999999999999998765
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-19 Score=194.58 Aligned_cols=187 Identities=14% Similarity=0.067 Sum_probs=115.9
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcc-eEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG-KITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG-~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
+.++|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.|.+.+.......+.+.++.|+.. ++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~ 93 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LR 93 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hh
Confidence 456899999999999999999999999999999999998764 57 67554433211000111111111110 11
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
+.+++... .+... +....++.+++..++. .+. ...
T Consensus 94 ~~~~l~~~--------------~~~~~------------------------~~~~~~~~~l~~~~l~--i~~-----~~~ 128 (296)
T 1cr0_A 94 QSDSLKRE--------------IIENG------------------------KFDQWFDELFGNDTFH--LYD-----SFA 128 (296)
T ss_dssp GCHHHHHH--------------HHHHT------------------------HHHHHHHHHHSSSCEE--EEC-----CCC
T ss_pred hccccccC--------------CCCHH------------------------HHHHHHHHHhccCCEE--EEC-----CCC
Confidence 11222110 00000 0011123333222221 111 123
Q ss_pred CCCHHH-HHHHHHHHHHHcCCcEeEEeCCCC---C---CCH-HHHHHHHHHHHHHHHhCCcEEEEEEccC-ch-------
Q 003389 342 GISGGQ-KKRVTTGEMLVGTANVLYMDEIST---G---LDS-STTFQICKFLKQMVHILDVTMIVALLQP-AP------- 405 (824)
Q Consensus 342 gLSGGq-rqRvsIA~aLv~~p~iLlLDEPTs---G---LDs-~t~~~I~~~L~~l~~~~~~tvIisi~q~-~~------- 405 (824)
.+|.+| +||+. |+++..+|+++++||||+ + +|. ....++++.|++++++.++|||++.|.. ..
T Consensus 129 ~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~ 207 (296)
T 1cr0_A 129 EAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEE 207 (296)
T ss_dssp SCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC----------
T ss_pred CCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccccccc
Confidence 488998 66776 999999999999999999 5 555 6778899999999887789999987764 23
Q ss_pred -------------hHHhhcCeEEEEcCCeE
Q 003389 406 -------------ETYDLFDDIILLSEGQI 422 (824)
Q Consensus 406 -------------e~~~lfD~iilL~~G~i 422 (824)
.+.++||+|++|++|+.
T Consensus 208 ~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 208 GRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67789999999998874
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-20 Score=204.57 Aligned_cols=128 Identities=9% Similarity=0.020 Sum_probs=97.5
Q ss_pred ceeeE-EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHH
Q 003389 189 DVSGI-VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLD 267 (824)
Q Consensus 189 ~vs~~-I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~ 267 (824)
|+|.. +++|++++|+||||||||||+++|+|+++|. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 45543 8999999999999999999999999999874 442 458999999998888 9999986
Q ss_pred HhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHH
Q 003389 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (824)
Q Consensus 268 f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGq 347 (824)
+... ++.. +. .....+.++|+.++ ....+..+. .|||||
T Consensus 143 ~~~~-~g~~--------------------~~--------------~d~~~~~~~L~~l~-~~~~~~~~~-----~lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFP--------------------ES--------------YNRRALMRFVTSVK-SGSDYACAP-----VYSHLH 181 (312)
T ss_dssp CTTC-TTSG--------------------GG--------------BCHHHHHHHHHHHH-TTCSCEEEE-----EEETTT
T ss_pred HHHh-cCCC--------------------hH--------------HHHHHHHHHHHHhC-CCcccCCcc-----cCChhh
Confidence 5321 1110 00 00112345667776 444445554 499999
Q ss_pred HHHHHHHHHHHcCCcEeEEeCCCCCCCH
Q 003389 348 KKRVTTGEMLVGTANVLYMDEISTGLDS 375 (824)
Q Consensus 348 rqRvsIA~aLv~~p~iLlLDEPTsGLDs 375 (824)
+|||++|++++.+|+|||+|||+..+|+
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999986
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-19 Score=188.97 Aligned_cols=154 Identities=14% Similarity=0.057 Sum_probs=97.0
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
++++|+||||++++|++++|+||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+|+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 456999999999999999999999999999999999976 445555 1246799999985 7778999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
.|++.+........... ..+.+ .+...|+.+ .+..+..+ ..
T Consensus 76 ~~~~~~~~~~~~~~~~~-----------------~~~~~---------------~~~~~L~~l--~~~~~~~~-----~~ 116 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHPD-----------------AFDND---------------LMHRTLKNI--VEGKTVEV-----PT 116 (245)
T ss_dssp HHHHHHHTTCCCTTSGG-----------------GBCHH---------------HHHHHHHHH--HTTCCEEE-----CC
T ss_pred hHhhhhhccCCCCCCcc-----------------cccHH---------------HHHHHHHHH--HCCCCeec-----cc
Confidence 99987754322111000 00001 111223322 33444444 35
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEcc
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q 402 (824)
+|+||+||+.+ ++++.+|+++++|||....|.. +.++ .+.+++++.|.
T Consensus 117 ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~~~~i~v~th~ 164 (245)
T 2jeo_A 117 YDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---FHLRLFVDTDS 164 (245)
T ss_dssp EETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---CSEEEEEECCH
T ss_pred ccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---cCeEEEEECCH
Confidence 99999999988 5788899999999998888753 2222 36788877654
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-19 Score=197.71 Aligned_cols=133 Identities=14% Similarity=0.175 Sum_probs=104.3
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-CCceEEEEecCCCCCCCCCHH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
++++++|+.+++|++++|+|||||||||||++|+|+++|+ +|.|+++|.+..... .++.++
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~~~~~i~--------------- 220 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKHHKNYTQ--------------- 220 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSSCSSEEE---------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccccchhEEE---------------
Confidence 4899999999999999999999999999999999999986 999999986411000 000000
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
.+ .+
T Consensus 221 ----------------------------------------------------------------------~~-----~g- 224 (330)
T 2pt7_A 221 ----------------------------------------------------------------------LF-----FG- 224 (330)
T ss_dssp ----------------------------------------------------------------------EE-----CB-
T ss_pred ----------------------------------------------------------------------EE-----eC-
Confidence 00 01
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||+||++||++|..+|++|++||||+. ++.+.|+.+.. .+.|+++++|.+. +.+.+||+++|.+|+.
T Consensus 225 -gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~-g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 225 -GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCS-GHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp -TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHT-TCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred -CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhc-CCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 7999999999999999999999999982 35667777653 2447888888765 7788999999988853
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-18 Score=197.89 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=68.9
Q ss_pred CCCC-CHHHHHHHHHHHHHHcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 340 RRGI-SGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 340 ~rgL-SGGqrqRvsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..|.+.|+++++ +.|||+++|++ ++...||++++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~--~~~~~~d~~~~ 469 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLA--QIAARAHHHYK 469 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCH--HHHHHSSEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCEEEE
Confidence 4567 999999999999999999 99999999999999999999999999986 68998887764 45668999999
Q ss_pred EcCC
Q 003389 417 LSEG 420 (824)
Q Consensus 417 L~~G 420 (824)
|.+|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9654
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=180.71 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=67.2
Q ss_pred cCCCCCHHHHH------HHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 339 MRRGISGGQKK------RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 339 ~~rgLSGGqrq------RvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
.+..||||||| |+++|++|+.+|++|||||||+|||+.....+++.|+++.+. +.|+|++.|+ .++.+.||
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~--~~~~~~~d 321 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHD--EELKDAAD 321 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESC--GGGGGGCS
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEECh--HHHHHhCC
Confidence 34569999999 667788888999999999999999999999999999998764 7788888776 46789999
Q ss_pred eEEEEc
Q 003389 413 DIILLS 418 (824)
Q Consensus 413 ~iilL~ 418 (824)
++++|.
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999995
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=194.50 Aligned_cols=156 Identities=13% Similarity=0.086 Sum_probs=116.2
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhh
Q 003389 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSG 270 (824)
Q Consensus 191 s~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a 270 (824)
++.+++|++++|+||||||||||+++++|...+ .|+ +.+.+++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~--------------~vi~~~~ee~~----~~l~~~~~--- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----NKE--------------RAILFAYEESR----AQLLRNAY--- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC--------------CEEEEESSSCH----HHHHHHHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC--------------CEEEEEEeCCH----HHHHHHHH---
Confidence 679999999999999999999999999998765 343 22455666521 01222110
Q ss_pred hhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 003389 271 RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKR 350 (824)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqR 350 (824)
+ .+ + + .+. +...|+....+..+ ..|||||+||
T Consensus 330 ~-~g-------------------~----~------------------~~~-~~~~g~~~~~~~~p-----~~LS~g~~q~ 361 (525)
T 1tf7_A 330 S-WG-------------------M----D------------------FEE-MERQNLLKIVCAYP-----ESAGLEDHLQ 361 (525)
T ss_dssp T-TS-------------------C----C------------------HHH-HHHTTSEEECCCCG-----GGSCHHHHHH
T ss_pred H-cC-------------------C----C------------------HHH-HHhCCCEEEEEecc-----ccCCHHHHHH
Confidence 0 00 0 0 011 12345555555444 4599999999
Q ss_pred HHHHHHHHcCCcEeEEeCCCCCCCHH-----HHHHHHHHHHHHHHhCCcEEEEEEccCc---------hhHHhhcCeEEE
Q 003389 351 VTTGEMLVGTANVLYMDEISTGLDSS-----TTFQICKFLKQMVHILDVTMIVALLQPA---------PETYDLFDDIIL 416 (824)
Q Consensus 351 vsIA~aLv~~p~iLlLDEPTsGLDs~-----t~~~I~~~L~~l~~~~~~tvIisi~q~~---------~e~~~lfD~iil 416 (824)
+.+|+++..+|++|++| ||+|||.. .+..+.+.++.+++ .|.|+|++.|+.. ..+..+||+|++
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~ 439 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLFTNTSDQFMGAHSITDSHISTITDTIIL 439 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEE
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEEEECcccccCcccccCcccceeeeEEEE
Confidence 99999999999999999 99999999 99999999998875 5899999888762 456778999999
Q ss_pred EcCCe
Q 003389 417 LSEGQ 421 (824)
Q Consensus 417 L~~G~ 421 (824)
|.+|+
T Consensus 440 L~~ge 444 (525)
T 1tf7_A 440 LQYVE 444 (525)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99887
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-17 Score=204.06 Aligned_cols=169 Identities=24% Similarity=0.336 Sum_probs=123.0
Q ss_pred HHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHh
Q 003389 212 TLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 291 (824)
Q Consensus 212 TLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~ 291 (824)
|...|..+++++. .|+|+++|+++.++ ..+||.|++.|.....-........
T Consensus 383 ~C~~C~g~rl~~~---~~~V~i~G~~i~~~----------------~~~~v~~~l~~~~~~~l~~~~~~~~--------- 434 (916)
T 3pih_A 383 TCSVCGGRRLNRE---ALSVKINGLNIHEF----------------TELSISEELEFLKNLNLTEREREIV--------- 434 (916)
T ss_dssp ECTTTCSCCBCTT---GGGEEETTEEHHHH----------------HHSBHHHHHHHHHSCCCCTTTTTTH---------
T ss_pred cchhcccccCChH---hcCcEECCccHHHh----------------hhCCHHHHHHHHHhccCcHHHHHHH---------
Confidence 4455666777776 89999999887542 3468999988743221100000000
Q ss_pred cCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHHcCCc--EeEEeC
Q 003389 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN--VLYMDE 368 (824)
Q Consensus 292 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~--iLlLDE 368 (824)
....+. .......|..+||... .++.++ .|||||||||.||++|+.+|+ +|+|||
T Consensus 435 ---------~~~~~~--------~~~~~~~L~~vgL~~l~l~r~~~-----~LSGGe~QRv~LAraL~~~p~~~lllLDE 492 (916)
T 3pih_A 435 ---------GELLKE--------IEKRLEFLVDVGLEYLTLSRSAT-----TLSGGESQRIRLATQIGSGLTGVIYVLDE 492 (916)
T ss_dssp ---------HHHHHH--------HHHHHHHHHTTTCTTCBTTSBGG-----GCCHHHHHHHHHHHHHHTTCCSCEEEEEC
T ss_pred ---------HhhHHH--------HHHHHHHHHHcCCccccccCCcc-----cCCHHHHHHHHHHHHHhhCCCCcEEEEEC
Confidence 000000 0112346778999754 566665 499999999999999999877 999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHHH
Q 003389 369 ISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVLE 433 (824)
Q Consensus 369 PTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~~ 433 (824)
||+|||+.....+++.|+++.+ .|.|+|++.|+ . +....||+|++| ++|++++.|+++++..
T Consensus 493 PT~gLD~~~~~~l~~~L~~L~~-~G~TvivVtHd-~-~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 493 PTIGLHPRDTERLIKTLKKLRD-LGNTVIVVEHD-E-EVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp TTTTCCGGGHHHHHHHHHHTTT-TTCEEEEECCC-H-HHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred CccCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCC-H-HHHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 9999999999999999999975 48899887665 3 345669999999 8999999999998753
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5e-19 Score=195.23 Aligned_cols=192 Identities=14% Similarity=0.125 Sum_probs=129.9
Q ss_pred hhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC---------
Q 003389 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--------- 241 (824)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--------- 241 (824)
++..++.+.+..+..+|+++ +.|.+|++++|+||||||||||+++|+|..+++ .|.|.+.|++..+.
T Consensus 46 i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 46 LLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp TTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCH
T ss_pred eeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhh
Confidence 34445554444456799999 999999999999999999999999999999987 89999998652111
Q ss_pred -CCCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHH
Q 003389 242 -VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY 320 (824)
Q Consensus 242 -~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (824)
..++.+.+++|.+. ...+.+.-... +.. ..+
T Consensus 122 ~~~~~~v~~~~~~~~-----~~~~r~~~~~~----------------------------------~~~--------~ae- 153 (347)
T 2obl_A 122 STLSKCVLVVTTSDR-----PALERMKAAFT----------------------------------ATT--------IAE- 153 (347)
T ss_dssp HHHTTEEEEEECTTS-----CHHHHHHHHHH----------------------------------HHH--------HHH-
T ss_pred hhhhceEEEEECCCC-----CHHHHHHHHHH----------------------------------HHH--------HHH-
Confidence 12356788887532 22222211100 000 000
Q ss_pred HHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH-hCCc-----
Q 003389 321 VLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH-ILDV----- 394 (824)
Q Consensus 321 iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~-~~~~----- 394 (824)
.+...| .+..+--+.+..+|+|| |||++| +.+|++ |+|||+....++.+.++++.+ ..|.
T Consensus 154 ~~~~~~----~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~ 219 (347)
T 2obl_A 154 YFRDQG----KNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIY 219 (347)
T ss_dssp HHHTTT----CEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEE
T ss_pred HHHhcc----ccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEE
Confidence 000001 01000001233599999 899999 577777 999999999999999999864 3465
Q ss_pred EEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhH
Q 003389 395 TMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 395 tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~ 431 (824)
|+++..|+ .. ..+||++++|.+|+++..|+.++.
T Consensus 220 tVl~~thd-l~--~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 220 TVLLESDN-VN--DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp EEECCSSC-CC--CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred EEEEeCCC-CC--ChhhhheEEeeCcEEEEeCCHHHc
Confidence 56665544 33 467999999999999999987765
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-17 Score=202.71 Aligned_cols=89 Identities=13% Similarity=0.199 Sum_probs=74.4
Q ss_pred CCCCHHHHHHHHHHHHH--HcCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 341 RGISGGQKKRVTTGEML--VGTANVLYMDEISTGLDSSTTFQI-CKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aL--v~~p~iLlLDEPTsGLDs~t~~~I-~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
+++|+|+++++.+|++| +.+|+++||||||+|||+.....+ ...++.+.+..|.++|+++|. .++.+++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~--~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF--HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC--GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc--HHHHHHhccccee
Confidence 45899999999999988 999999999999999999999888 566777776458899998876 3677899999999
Q ss_pred cCCeEEEecChhhH
Q 003389 418 SEGQIVYQGPRDNV 431 (824)
Q Consensus 418 ~~G~iv~~G~~~~~ 431 (824)
.+|++...++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999988876654
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-18 Score=175.46 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=97.5
Q ss_pred ccccee-eEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC----CCcceEeeCCcccCCCCCCceEEEEecCCCCCCCC
Q 003389 186 ILKDVS-GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL----RASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 186 IL~~vs-~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~----~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l 260 (824)
.|+.+- +-|++|++++|+||||||||||+++|+|...+.. ...|.|++++.+.. ..+.+++++|+..+.+.
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~- 88 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 88 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-
Confidence 444333 6899999999999999999999999999654420 01335555554310 01223333333222222
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||.||+.+.
T Consensus 89 ~~~~~~~~~----------------------------------------------------------------------- 97 (231)
T 4a74_A 89 EVLKHIYVA----------------------------------------------------------------------- 97 (231)
T ss_dssp HHHHTEEEE-----------------------------------------------------------------------
T ss_pred HHhhcEEEE-----------------------------------------------------------------------
Confidence 333332221
Q ss_pred CCCCHHH-HHHHHHHHHHHc-------CCcEeEEeCCCCCCCHHH------------HHHHHHHHHHHHHhCCcEEEEEE
Q 003389 341 RGISGGQ-KKRVTTGEMLVG-------TANVLYMDEISTGLDSST------------TFQICKFLKQMVHILDVTMIVAL 400 (824)
Q Consensus 341 rgLSGGq-rqRvsIA~aLv~-------~p~iLlLDEPTsGLDs~t------------~~~I~~~L~~l~~~~~~tvIisi 400 (824)
+..++++ ++.+..++.++. +|+++++||||+++|+.. ..++++.|+++++..+.|+|++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vt 177 (231)
T 4a74_A 98 RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTN 177 (231)
T ss_dssp ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 1123332 233444554444 899999999999999841 23788888888876789998877
Q ss_pred ccCc---hhHHhhcCeEEEEcCCe
Q 003389 401 LQPA---PETYDLFDDIILLSEGQ 421 (824)
Q Consensus 401 ~q~~---~e~~~lfD~iilL~~G~ 421 (824)
|... ..+...+|++++|++|+
T Consensus 178 H~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 178 QVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp ECC---------CCSEEEEEEECT
T ss_pred ecccCcchhhHhhceEEEEEEecC
Confidence 6322 23677899999998753
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-19 Score=207.57 Aligned_cols=172 Identities=17% Similarity=0.211 Sum_probs=116.5
Q ss_pred ccccccccceee-EEeCCeEEEEEcCCCCcHHHHHHH--HhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCC
Q 003389 181 KRSVRILKDVSG-IVKPSRMTLLLGPPGAGKTTLMLA--LAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDL 255 (824)
Q Consensus 181 ~~~~~IL~~vs~-~I~~Ge~~aLlGpnGSGKSTLL~~--LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~ 255 (824)
..+.++|++||+ .|++|++++|+||||||||||+++ ++|+++|+ +|.|+++|.+..... ..+.+||++|+..
T Consensus 22 ~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 22 RTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEETPQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp CCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHGGGTCCHHHHH
T ss_pred cCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeCCHHHHHHHHHHcCCChHHhh
Confidence 345679999999 999999999999999999999999 78999876 899999998732111 1245788888632
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (824)
..+ ++.+ . ... ++.+ ..++++.++|.+..+..+
T Consensus 99 ~~~------~l~~-~---~~~-------------------~~~~------------------~~~~l~~~~l~~~~~~~~ 131 (525)
T 1tf7_A 99 DEG------KLFI-L---DAS-------------------PDPE------------------GQEVVGGFDLSALIERIN 131 (525)
T ss_dssp HTT------SEEE-E---ECC-------------------CCSS------------------CCSCCSSHHHHHHHHHHH
T ss_pred ccC------cEEE-E---ecC-------------------cccc------------------hhhhhcccCHHHHHHHHH
Confidence 111 1100 0 000 0000 000111222222222222
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCC-----CCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh----
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST-----GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE---- 406 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTs-----GLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e---- 406 (824)
. .||||| |+++++||||+ +||+..+.++.+.++++++ .|+|+|++.|.....
T Consensus 132 ~-----~LS~g~-------------~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~ 192 (525)
T 1tf7_A 132 Y-----AIQKYR-------------ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPIA 192 (525)
T ss_dssp H-----HHHHHT-------------CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSS
T ss_pred H-----HHHHcC-------------CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccccc
Confidence 2 266664 77999999998 5699999999999999987 489999988776532
Q ss_pred ----HHhhcCeEEEEcCCe
Q 003389 407 ----TYDLFDDIILLSEGQ 421 (824)
Q Consensus 407 ----~~~lfD~iilL~~G~ 421 (824)
...+||+|++|++|+
T Consensus 193 ~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 193 RYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TTSCHHHHCSEEEEEEEEC
T ss_pred cccceeeeeeEEEEEEEEc
Confidence 345699999999843
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-16 Score=191.37 Aligned_cols=104 Identities=27% Similarity=0.373 Sum_probs=90.7
Q ss_pred HHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHHcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 003389 321 VLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397 (824)
Q Consensus 321 iL~~lgL~~~-~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvI 397 (824)
.|+.+||... .|+.+++ |||||||||.||++|..+| ++|+|||||+|||+.....+++.|+++.+ .|.|||
T Consensus 487 ~L~~vGL~~l~ldR~~~t-----LSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVI 560 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLI 560 (972)
T ss_dssp HHHHHTCTTSBSSSBGGG-----CCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEE
T ss_pred HhhhCCCCccccCCcccc-----CCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 5789999864 6777664 9999999999999999984 99999999999999999999999999975 688998
Q ss_pred EEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHH
Q 003389 398 VALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (824)
Q Consensus 398 isi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~ 432 (824)
++.|.. +..+.||+|++| .+|++++.|+++++.
T Consensus 561 vVeHdl--~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 561 VVEHDE--DTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp EECCCH--HHHHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred EEecCH--HHHHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 876653 345689999999 799999999998764
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.5e-18 Score=208.96 Aligned_cols=160 Identities=15% Similarity=0.131 Sum_probs=111.4
Q ss_pred ccccccceeeEEeC-------CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEE-EEecCC
Q 003389 183 SVRILKDVSGIVKP-------SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCA-YISQHD 254 (824)
Q Consensus 183 ~~~IL~~vs~~I~~-------Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~-yv~Q~d 254 (824)
+..|++||++.+++ |++++|+||||||||||||+| |++.+ ..++| ||||+.
T Consensus 768 ~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~ 826 (1022)
T 2o8b_B 768 DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEV 826 (1022)
T ss_dssp CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSE
T ss_pred CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCc
Confidence 35699999999987 999999999999999999999 88753 11234 888864
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
. .+||.|++.. + +|+.+..+.
T Consensus 827 ~---~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~~- 847 (1022)
T 2o8b_B 827 C---RLTPIDRVFT--R-----------------------------------------------------LGASDRIMS- 847 (1022)
T ss_dssp E---EECCCSBEEE--E-----------------------------------------------------CC--------
T ss_pred C---CCCHHHHHHH--H-----------------------------------------------------cCCHHHHhh-
Confidence 2 4455554411 0 111110000
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHH-HHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTT-FQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~-~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
....+|++++ ++++|++++++|+++|||||++|+|+... ..+...|+.+++..+.++|+++|. ...+...+|+
T Consensus 848 ----~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~-~el~~~~~d~ 921 (1022)
T 2o8b_B 848 ----GESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHY-HSLVEDYSQN 921 (1022)
T ss_dssp ------CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCC-HHHHHHTSSC
T ss_pred ----chhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCC-HHHHHHhCCc
Confidence 0123666655 59999999999999999999999999885 556888888876557888887665 4566778999
Q ss_pred EEEEcCCeEE--EecChh
Q 003389 414 IILLSEGQIV--YQGPRD 429 (824)
Q Consensus 414 iilL~~G~iv--~~G~~~ 429 (824)
+.++ +|++. +.|+++
T Consensus 922 ~~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 922 VAVR-LGHMACMVENECE 938 (1022)
T ss_dssp SSEE-EEEEEEC------
T ss_pred ceee-cCeEEEEEecCcc
Confidence 9887 58887 556543
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-17 Score=173.69 Aligned_cols=133 Identities=15% Similarity=0.213 Sum_probs=98.3
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 264 (824)
++|+++| +++|++++|+|||||||||||++|+|+++|. .+|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~-~~~~~~~v~q~----------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYV-FKHKKSIVNQR----------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSC-CCCSSSEEEEE-----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceee-cCCcceeeeHH-----------
Confidence 5899999 8999999999999999999999999998762 279999999875321 12222222221
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
.+|++. ..+
T Consensus 79 -----------------------------------------------------------~~gl~~-----------~~l- 87 (261)
T 2eyu_A 79 -----------------------------------------------------------EVGEDT-----------KSF- 87 (261)
T ss_dssp -----------------------------------------------------------EBTTTB-----------SCH-
T ss_pred -----------------------------------------------------------HhCCCH-----------HHH-
Confidence 112211 012
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
|++|+++|..+|+++++|||| |+.+...++ +. +. .|.++++++|... ..+.+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~-~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AE-TGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HH-TTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-Hc-cCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 899999999999999999999 998866544 33 33 4889888887754 6788999888754
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.6e-16 Score=189.11 Aligned_cols=104 Identities=24% Similarity=0.309 Sum_probs=91.0
Q ss_pred HHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHHcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 003389 321 VLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397 (824)
Q Consensus 321 iL~~lgL~~~-~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvI 397 (824)
.|+.+||... .++.+. .|||||||||.||++|..+| ++|+|||||+|||+.....+.+.|+++.+ .|.|+|
T Consensus 362 ~L~~vGL~~l~l~r~~~-----tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~-~G~TVI 435 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTP-----TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR-GGNSLF 435 (842)
T ss_dssp HHHHTTCTTSBTTCBGG-----GSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEE
T ss_pred HHHhCCCCcCCccCCcC-----cCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH-cCCEEE
Confidence 5789999864 676665 49999999999999999999 59999999999999999999999999975 588988
Q ss_pred EEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHH
Q 003389 398 VALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (824)
Q Consensus 398 isi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~ 432 (824)
++.|.. ++.+.||+|++| .+|++++.|+++++.
T Consensus 436 vVeHdl--~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 436 VVEHDL--DVIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp EECCCH--HHHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred EEcCCH--HHHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 876554 366789999999 799999999998764
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-18 Score=177.40 Aligned_cols=145 Identities=16% Similarity=0.099 Sum_probs=108.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCC--CCCCHHHHHHHhhh
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH--GEMTVRETLDFSGR 271 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~--~~lTV~E~L~f~a~ 271 (824)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 579999999999999999999999998742 478999988776 56899988765321
Q ss_pred hcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHH----
Q 003389 272 CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ---- 347 (824)
Q Consensus 272 ~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGq---- 347 (824)
..+. .....+..+++.+++.+..+.++. .+|+||
T Consensus 61 ~~~~-------------------------------------~~~~~~~~~l~~~~~~~~~~~~~~-----~~s~g~~~~~ 98 (211)
T 3asz_A 61 HPDA-------------------------------------FDLALYLEHAQALLRGLPVEMPVY-----DFRAYTRSPR 98 (211)
T ss_dssp SGGG-------------------------------------BCHHHHHHHHHHHHTTCCEEECCE-----ETTTTEECSS
T ss_pred Chhh-------------------------------------hhHHHHHHHHHHHHcCCCcCCCcc-----cCcccCCCCC
Confidence 0000 001123345667777665554443 488886
Q ss_pred HHHHHHHHHHHcCCcEeEEeCCCCC-------CCHHHHHHHHHHHHHHHHhCCcEEEEEEcc
Q 003389 348 KKRVTTGEMLVGTANVLYMDEISTG-------LDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (824)
Q Consensus 348 rqRvsIA~aLv~~p~iLlLDEPTsG-------LDs~t~~~I~~~L~~l~~~~~~tvIisi~q 402 (824)
+||++++++++.+|.++++||||++ ||+....++.+.+++..+..|.|++.+.|+
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4788999999999999999999999 999999999999988755457787766665
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-17 Score=180.52 Aligned_cols=171 Identities=18% Similarity=0.151 Sum_probs=105.6
Q ss_pred cccccce-eeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCC-CCCcce-EeeCCcccCCCCCCceEEEEecCCCCCC
Q 003389 184 VRILKDV-SGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKD-LRASGK-ITYCGHELNEFVPQRTCAYISQHDLHHG 258 (824)
Q Consensus 184 ~~IL~~v-s~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l--~~~-~~~sG~-I~~nG~~~~~~~~~~~i~yv~Q~d~~~~ 258 (824)
...|+++ +|.|++|++++|+||||||||||++.|++.. +|+ ....|+ |++++.+.. ..+.+++++|...+.+
T Consensus 117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~ 193 (349)
T 1pzn_A 117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDP 193 (349)
T ss_dssp CHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCH
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCH
Confidence 3456666 6899999999999999999999999999987 443 011367 788876531 1234555666543332
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCc
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (824)
. ++.+|+.+...
T Consensus 194 ~-~v~~ni~~~~~------------------------------------------------------------------- 205 (349)
T 1pzn_A 194 D-EVLKHIYVARA------------------------------------------------------------------- 205 (349)
T ss_dssp H-HHGGGEEEEEC-------------------------------------------------------------------
T ss_pred H-HHhhCEEEEec-------------------------------------------------------------------
Confidence 2 44443322110
Q ss_pred cCCCCCHHHHHHHHHHHHHH-------cCCcEeEEeCCCCCCCHHH------------HHHHHHHHHHHHHhCCcEEEEE
Q 003389 339 MRRGISGGQKKRVTTGEMLV-------GTANVLYMDEISTGLDSST------------TFQICKFLKQMVHILDVTMIVA 399 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv-------~~p~iLlLDEPTsGLDs~t------------~~~I~~~L~~l~~~~~~tvIis 399 (824)
.-|++|+|++.++++++ .+|+++++||||++||+.. ..++++.|+++++..++|+|++
T Consensus 206 ---~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~ 282 (349)
T 1pzn_A 206 ---FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVT 282 (349)
T ss_dssp ---CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ---CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 01345666666666665 6899999999999999852 4677778888887778888887
Q ss_pred EccCchhHHhhcCeEEEEcCCeEEEecChh
Q 003389 400 LLQPAPETYDLFDDIILLSEGQIVYQGPRD 429 (824)
Q Consensus 400 i~q~~~e~~~lfD~iilL~~G~iv~~G~~~ 429 (824)
.|. ....-..+++......|+++.++...
T Consensus 283 ~h~-~~~~~~~~~~~~~~~~G~~l~~~~~~ 311 (349)
T 1pzn_A 283 NQV-QARPDAFFGDPTRPIGGHILAHSATL 311 (349)
T ss_dssp EEC-C---------------CCCCCTTCSE
T ss_pred ccc-ccccccccCCccccCCcceEeecCcE
Confidence 654 33443455667777778877666543
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-16 Score=192.65 Aligned_cols=146 Identities=14% Similarity=0.175 Sum_probs=99.6
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
+..|++|||+.+++|++++|+||||||||||||++++..-.. ..|. +.+.+. +.+..-+.++..+.+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~----------~vpa~~-~~i~~~d~i~~~ig~ 725 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS----------YVPAEE-ATIGIVDGIFTRMGA 725 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC----------CBSSSE-EEEECCSEEEEEC--
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc----------cccchh-hhhhHHHHHHHhCCh
Confidence 356899999999999999999999999999999998653210 0111 111111 112211222222222
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
.+++ . .....
T Consensus 726 ~d~l-----------------------------------------------------------------~-----~~~st 735 (918)
T 3thx_B 726 ADNI-----------------------------------------------------------------Y-----KGRST 735 (918)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred HHHH-----------------------------------------------------------------H-----HhHHH
Confidence 2211 1 11235
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQIC-KFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~-~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
+|+|++|++.|+++ +.+|+++||||||+|||+.....+. ..++.+++..|.|+|+++|.+ ++.+++|+.
T Consensus 736 fs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 736 FMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred hhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 89999999999998 8999999999999999999999998 777777665688999988764 455666654
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.6e-17 Score=175.81 Aligned_cols=149 Identities=14% Similarity=0.142 Sum_probs=107.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---------CceEEEEecCCCCCCCCCHHHHH
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---------QRTCAYISQHDLHHGEMTVRETL 266 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---------~~~i~yv~Q~d~~~~~lTV~E~L 266 (824)
+|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|+....|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999986 9999999998753221 24589999998888889999999
Q ss_pred HHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHH
Q 003389 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (824)
Q Consensus 267 ~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGG 346 (824)
.++.. .+. + . .+++..|+.+..+.. ++..
T Consensus 178 ~~~~~-~~~---------------------d-----------------~----~llDt~G~~~~~~~~--------~~eL 206 (304)
T 1rj9_A 178 QAMKA-RGY---------------------D-----------------L----LFVDTAGRLHTKHNL--------MEEL 206 (304)
T ss_dssp HHHHH-HTC---------------------S-----------------E----EEECCCCCCTTCHHH--------HHHH
T ss_pred HHHHh-CCC---------------------C-----------------E----EEecCCCCCCchHHH--------HHHH
Confidence 76421 000 0 0 012223433322221 4555
Q ss_pred HHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 347 qrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
++||++|||+++.+|+.++| +||+.+..++++.++++.+..+.|+|+++|.+
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 69999999999999994444 45555556677777777665578888887754
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-16 Score=192.28 Aligned_cols=132 Identities=17% Similarity=0.142 Sum_probs=98.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-CCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG-KDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~-~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
..+++|+|+. |++++|+||||||||||||+|+|... +. .|.+.- . .+..+++++| +++.+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~vp------a--~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFVP------A--EEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCBS------S--SEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCceee------h--hccceeeHHH---hhccCCH
Confidence 4688999999 99999999999999999999999863 33 565421 1 1245677766 4455555
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
.|++. .+
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 55442 14
Q ss_pred CCHHHHHHHHHHHHH--HcCCcEeEEeCC---CCCCCHHHH-HHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc
Q 003389 343 ISGGQKKRVTTGEML--VGTANVLYMDEI---STGLDSSTT-FQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (824)
Q Consensus 343 LSGGqrqRvsIA~aL--v~~p~iLlLDEP---TsGLDs~t~-~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf 411 (824)
+|+|+++++.+++++ +.+|+++||||| |++||..+. ..+++.|++ .+.|+|+++|.+ +..+++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCH--HHHTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCH--HHHHhh
Confidence 899999999999999 999999999999 999998875 578888876 278888887764 344444
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-15 Score=171.69 Aligned_cols=75 Identities=19% Similarity=0.359 Sum_probs=66.2
Q ss_pred CCCCHHHHHHHHHHHHHH----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 341 RGISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv----~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
..||||||||++||++|+ .+|++++|||||++||+.....+.+.|+++.+ .+.++|++.|+ .++.+.||++++
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~--~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLK--NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSC--HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECC--HHHHHhCCEEEE
Confidence 349999999999999999 68999999999999999999999999999864 36788887776 467789999999
Q ss_pred Ec
Q 003389 417 LS 418 (824)
Q Consensus 417 L~ 418 (824)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 96
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-15 Score=155.27 Aligned_cols=173 Identities=14% Similarity=0.116 Sum_probs=110.8
Q ss_pred ccccccceee-EEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 183 SVRILKDVSG-IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~-~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
+.+.|+++.+ .+++|++++|+||||||||||++.|++...+. .|+|.|.+.+. +
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~----------------------~ 62 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEE----------------------S 62 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSS----------------------C
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEccc----------------------C
Confidence 3457888885 89999999999999999999999999887553 56666544321 1
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
..+........ +. .+.. .. . ......+.....++ ...+ ..
T Consensus 63 ~~~~~~~~~~~-~~-------------------~~~~-~~---------~-~~~~~~~~~~~~~~-----~~~~----~~ 102 (235)
T 2w0m_A 63 RDSIIRQAKQF-NW-------------------DFEE-YI---------E-KKLIIIDALMKEKE-----DQWS----LV 102 (235)
T ss_dssp HHHHHHHHHHT-TC-------------------CCGG-GB---------T-TTEEEEECCC---------CTTB----CS
T ss_pred HHHHHHHHHHh-cc-------------------hHHH-Hh---------h-CCEEEEeccccccC-----ceee----ec
Confidence 11111000000 00 0000 00 0 00000000000111 0001 12
Q ss_pred CCCHHHHHHHHHHHHHHcCCc--EeEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCcEEEEEEccCc-------hhHHhh
Q 003389 342 GISGGQKKRVTTGEMLVGTAN--VLYMDEISTGL--DSSTTFQICKFLKQMVHILDVTMIVALLQPA-------PETYDL 410 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~--iLlLDEPTsGL--Ds~t~~~I~~~L~~l~~~~~~tvIisi~q~~-------~e~~~l 410 (824)
..|.+|.++...+.+...+|+ ++++||||+++ |+....++++.|+++++..+.|+|++.|... +.+.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 359999988888877778999 99999999887 9999999999999998877889988876652 458889
Q ss_pred cCeEEEEcCC
Q 003389 411 FDDIILLSEG 420 (824)
Q Consensus 411 fD~iilL~~G 420 (824)
||+|++|...
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999999864
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-15 Score=146.54 Aligned_cols=82 Identities=20% Similarity=0.258 Sum_probs=71.0
Q ss_pred ccCCCCCHHHHHHHHHH------HHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc
Q 003389 338 EMRRGISGGQKKRVTTG------EMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA------~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf 411 (824)
..+..|||||||||+|| ++|+.+|++++|||||+|||+.+...+.+.|+++.+. +.|+|++.|++ +..+.|
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCG--GGGGGC
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChH--HHHHhC
Confidence 34556999999999876 8999999999999999999999999999999998754 78999888775 567899
Q ss_pred CeEEEE--cCCeE
Q 003389 412 DDIILL--SEGQI 422 (824)
Q Consensus 412 D~iilL--~~G~i 422 (824)
|++++| .+|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45643
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.9e-18 Score=169.52 Aligned_cols=158 Identities=20% Similarity=0.193 Sum_probs=103.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-CCceEEEEecCCCCCCCCCHHHHHHHhhhhcCC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 275 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~ 275 (824)
|++++|+||||||||||+++|+|+++ + +| |.++|....+.. .++.++|++|+. .... +++ ++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~-- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVG-- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hccc--
Confidence 78999999999999999999999987 6 89 999997764432 257799999973 1111 111 0000
Q ss_pred chhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHH-
Q 003389 276 GTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTT- 353 (824)
Q Consensus 276 ~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~rgLSGGqrqRvsI- 353 (824)
++.+. ..+..+|. ....+|+|||+++..
T Consensus 66 -------------------------------------------------~~~~~~~~~~~v~~-~~~~ls~~er~~~~~l 95 (189)
T 2i3b_A 66 -------------------------------------------------LEPPPGKRECRVGQ-YVVDLTSFEQLALPVL 95 (189)
T ss_dssp -------------------------------------------------CCCCSSSCCEESSS-SEECHHHHHTTTTTTT
T ss_pred -------------------------------------------------ccCCccccccccce-EEEcchHHHHHHHHHH
Confidence 00000 01123442 234599999998844
Q ss_pred HH---HHHcCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHHhCCcEEEE---EEccCchhHHhhcCeEEEEcCCeEEEe
Q 003389 354 GE---MLVGTANVLYMDE--ISTGLDSSTTFQICKFLKQMVHILDVTMIV---ALLQPAPETYDLFDDIILLSEGQIVYQ 425 (824)
Q Consensus 354 A~---aLv~~p~iLlLDE--PTsGLDs~t~~~I~~~L~~l~~~~~~tvIi---si~q~~~e~~~lfD~iilL~~G~iv~~ 425 (824)
++ |+..+|++|++|| |+..+|......+.+.++ . ..++|+ ++.|..+ ..+.|+|..+.+|+|+.-
T Consensus 96 ~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~-~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 96 RNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T-PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp CCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C-SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred hhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C-CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence 44 5789999999999 898899876555555444 2 334443 3324432 346788888888898764
Q ss_pred c
Q 003389 426 G 426 (824)
Q Consensus 426 G 426 (824)
.
T Consensus 169 ~ 169 (189)
T 2i3b_A 169 T 169 (189)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-17 Score=178.74 Aligned_cols=156 Identities=15% Similarity=0.200 Sum_probs=81.1
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC-cCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK-LGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~-l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l 260 (824)
+++.+++++++.| +|+||||+|||||+++|+|. ..+. +| |.++|.++......+.+++++|++.....+
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~l 78 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRL 78 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCc
Confidence 3567999999998 99999999999999999997 6665 78 888887764322235679999988888889
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||.||..++.... ..++ . ....+++.+. .+.. .
T Consensus 79 tv~Dt~g~~~~~~-------------~~e~---~--------------------~~l~~~l~~~------~~~~-----~ 111 (301)
T 2qnr_A 79 TVVDTPGYGDAIN-------------CRDC---F--------------------KTIISYIDEQ------FERY-----L 111 (301)
T ss_dssp EEEEEC---------------------------C--------------------TTHHHHHHHH------HHHH-----H
T ss_pred chhhhhhhhhhcC-------------cHHH---H--------------------HHHHHHHHHH------HHHH-----H
Confidence 9999887753210 0000 0 0011111111 1222 2
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEcc
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEIST-GLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTs-GLDs~t~~~I~~~L~~l~~~~~~tvIisi~q 402 (824)
+++|||||||+.+||+++ ++++||||+ |||+... +.++++.+..+.++|++-|+
T Consensus 112 ~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~D 166 (301)
T 2qnr_A 112 HDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKAD 166 (301)
T ss_dssp HHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGG
T ss_pred HHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCC
Confidence 459999999999988875 999999998 5999873 56666654345566655443
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.58 E-value=7e-15 Score=156.86 Aligned_cols=152 Identities=13% Similarity=0.120 Sum_probs=103.4
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhh
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGR 271 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~ 271 (824)
+-+++|++++|+||||||||||++.|++... .|++.+ |.+... ...+.|+..++. ..+ +. .+
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~~-g~~~~~---~~~v~~~~~e~~------~~~-~~--~r 86 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDLL-EVGELP---TGPVIYLPAEDP------PTA-IH--HR 86 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCTT-CCCCCC---CCCEEEEESSSC------HHH-HH--HH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCcC-CCccCC---CccEEEEECCCC------HHH-HH--HH
Confidence 3589999999999999999999999998653 566643 544321 345788876542 211 10 00
Q ss_pred hcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 003389 272 CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRV 351 (824)
Q Consensus 272 ~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRv 351 (824)
+...+ ... .....+.+++.+++.+..+..+ ..+|+||+|++
T Consensus 87 ~~~~g-----------------~~~-----------------~~~~~~~~~~~l~l~~~~~~~~-----~~ls~g~~~~i 127 (279)
T 1nlf_A 87 LHALG-----------------AHL-----------------SAEERQAVADGLLIQPLIGSLP-----NIMAPEWFDGL 127 (279)
T ss_dssp HHHHH-----------------TTS-----------------CHHHHHHHHHHEEECCCTTSCC-----CTTSHHHHHHH
T ss_pred HHHHH-----------------hhc-----------------ChhhhhhccCceEEeecCCCCc-----ccCCHHHHHHH
Confidence 00000 000 0012344667788776655444 45999998876
Q ss_pred HHHHHHHcCCcEeEEeCCCC--CCCHHHH---HHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 352 TTGEMLVGTANVLYMDEIST--GLDSSTT---FQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 352 sIA~aLv~~p~iLlLDEPTs--GLDs~t~---~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
++++.+|+++++||||+ ++|.... .++++.|+++++..|+|+|++.|..
T Consensus 128 ---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 128 ---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp ---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred ---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 57888999999999999 9998544 8889999999876788988876643
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.57 E-value=4e-17 Score=192.82 Aligned_cols=171 Identities=16% Similarity=0.215 Sum_probs=109.2
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC-CCCCcceEeeCCcccCC------CCCCceEEEEecCCCCCCCCCHH
Q 003389 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK-DLRASGKITYCGHELNE------FVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 191 s~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~-~~~~sG~I~~nG~~~~~------~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
++.++. ++|+|||||||||||++|+|+..| + +|.|+++|.++.. ...++.++|++|+..+++.+||+
T Consensus 42 ~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~ 115 (608)
T 3szr_A 42 DLALPA---IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVE 115 (608)
T ss_dssp SCCCCC---EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHH
T ss_pred cccCCe---EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHH
Confidence 344443 999999999999999999999877 5 9999999988521 12346799999999999999999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
|++.++....+.. ..+ +
T Consensus 116 e~i~~~~~~~~~~-----------------------------------------------~~~----------------~ 132 (608)
T 3szr_A 116 KEINKAQNAIAGE-----------------------------------------------GMG----------------I 132 (608)
T ss_dssp TTHHHHHHHHHCS-----------------------------------------------SSC----------------C
T ss_pred HHHHHHHHHhcCC-----------------------------------------------ccc----------------c
Confidence 9998764221100 000 1
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCC------CCCCCHHHHHHHHHHHHHHHHhC-CcEEEEEEccCch----hHHhh--
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEI------STGLDSSTTFQICKFLKQMVHIL-DVTMIVALLQPAP----ETYDL-- 410 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEP------TsGLDs~t~~~I~~~L~~l~~~~-~~tvIisi~q~~~----e~~~l-- 410 (824)
| ++++.++......|+++++||| |+|||+....++.+.++++.+.. +.+++++. |... +..++
T Consensus 133 s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt-~~~d~a~~~~l~la~ 208 (608)
T 3szr_A 133 S---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVP-SNVDIATTEALSMAQ 208 (608)
T ss_dssp C---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEE-SSSCTTTCHHHHHHH
T ss_pred c---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEe-ccchhccHHHHHHHH
Confidence 1 0111111222347999999999 99999999999999999975433 44444444 3322 11222
Q ss_pred ------cCeEEEEcCCeEEEecChhhHHHH
Q 003389 411 ------FDDIILLSEGQIVYQGPRDNVLEF 434 (824)
Q Consensus 411 ------fD~iilL~~G~iv~~G~~~~~~~~ 434 (824)
...|+|+.++.++..|+.+++.+.
T Consensus 209 ~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~ 238 (608)
T 3szr_A 209 EVDPEGDRTIGILTKPDLVDKGTEDKVVDV 238 (608)
T ss_dssp HHCSSCCSEEEEEECGGGSSSSSTTCCCCC
T ss_pred HHhhcCCceEEEecchhhcCcccHHHHHHH
Confidence 245889999998888876655443
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=8.3e-16 Score=185.98 Aligned_cols=158 Identities=14% Similarity=0.071 Sum_probs=106.0
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
+..+++|+|+. ++|++++|+||||||||||||+|+|..... ..| ..+.. ....++++.| ++..+++
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa--~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPA--QKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSS--SEEEECCCCE---EEEEEC-
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccch--hcccceeHHH---HHhhCCH
Confidence 34689999999 999999999999999999999999974321 122 11111 0123555544 4455555
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
.|++..+ ...
T Consensus 660 ~d~l~~~----------------------------------------------------------------------~st 669 (800)
T 1wb9_A 660 ADDLASG----------------------------------------------------------------------RST 669 (800)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhh----------------------------------------------------------------------hhh
Confidence 5554321 012
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQI-CKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I-~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
+|+|+++ +..+...+.+|+++|||||++|+|+.....+ ...++.+.+..+.++|+++|.+ +..+++|++..+.+|+
T Consensus 670 f~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~ 746 (800)
T 1wb9_A 670 FMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVH 746 (800)
T ss_dssp CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEE
T ss_pred hhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEE
Confidence 5666654 4444456899999999999999999887776 6778888764588999988775 4556889887777787
Q ss_pred EEEecC
Q 003389 422 IVYQGP 427 (824)
Q Consensus 422 iv~~G~ 427 (824)
+.+...
T Consensus 747 ~~~~~~ 752 (800)
T 1wb9_A 747 LDALEH 752 (800)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 765543
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=9.5e-17 Score=178.19 Aligned_cols=164 Identities=16% Similarity=0.090 Sum_probs=100.5
Q ss_pred cccceeeEEeC--CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCc----ceEeeC----CcccCCCCCC--ceEEEEecC
Q 003389 186 ILKDVSGIVKP--SRMTLLLGPPGAGKTTLMLALAGKLGKDLRAS----GKITYC----GHELNEFVPQ--RTCAYISQH 253 (824)
Q Consensus 186 IL~~vs~~I~~--Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~s----G~I~~n----G~~~~~~~~~--~~i~yv~Q~ 253 (824)
+.+.|++.|++ |+.++|+||||||||||+++|+|++++. + |+|.++ |.+. ..... +.+++++|+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~~~~~-~~~~~~~~~I~~~~q~ 232 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLGGDEQ-AMQYSDYPQMALGHQR 232 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSSSCTT-SSCTTTHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcCCCcc-cCChhHHHHHHHHHHH
Confidence 56789999999 9999999999999999999999999886 6 888774 3222 11100 112222221
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
... ...|+.||+.+ +..+..++
T Consensus 233 ~~~-~~~t~~~nl~~---------------------------------------------------------~~~~~~~~ 254 (365)
T 1lw7_A 233 YID-YAVRHSHKIAF---------------------------------------------------------IDTDFITT 254 (365)
T ss_dssp HHH-HHHHHCSSEEE---------------------------------------------------------ESSCHHHH
T ss_pred HHH-HHHhccCCEEE---------------------------------------------------------EeCCchHH
Confidence 100 00111111110 00001111
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHH-cCCcEeEEeC---CC------CCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLV-GTANVLYMDE---IS------TGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv-~~p~iLlLDE---PT------sGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
.+ ..+|+|++||..+++++. .+|+++|||| |+ .++|...+..+.+.|+++.+..+.++++.. +|
T Consensus 255 ~~-----~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ilild-e~ 328 (365)
T 1lw7_A 255 QA-----FCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIE-SP 328 (365)
T ss_dssp HH-----HHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEE-CS
T ss_pred HH-----HHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeC-CC
Confidence 11 125677788888888775 5999999999 65 589999999999999988765567777765 44
Q ss_pred chhHHhhcCeEEEEc
Q 003389 404 APETYDLFDDIILLS 418 (824)
Q Consensus 404 ~~e~~~lfD~iilL~ 418 (824)
. +..+++|.+.+++
T Consensus 329 ~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 329 S-YLDRYNQVKAVIE 342 (365)
T ss_dssp S-HHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHH
Confidence 3 4556666655554
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-14 Score=164.43 Aligned_cols=162 Identities=15% Similarity=0.143 Sum_probs=92.0
Q ss_pred HhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEE
Q 003389 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAY 249 (824)
Q Consensus 170 ~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~y 249 (824)
.+.+.++...+ +.+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ ....+.+++
T Consensus 11 ~l~~~~l~~~y-~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~---t~~~~~i~~ 79 (418)
T 2qag_C 11 YVGFANLPNQV-YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK---TVQVEQSKV 79 (418)
T ss_dssp ----CCCCCCT-TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC--------CCEEEEEEC
T ss_pred cEEEEecceeE-CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc---ceeeeeEEE
Confidence 34555554444 3467999999998 99999999999999999999764311 2323222211 111256899
Q ss_pred EecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc
Q 003389 250 ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (824)
Q Consensus 250 v~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (824)
++|++..++.+||.||+.++..... .+ .... ..+++ +
T Consensus 80 v~q~~~~~~~Ltv~Dt~g~~~~~~~-------------~~---------~~~~--------------i~~~i-~------ 116 (418)
T 2qag_C 80 LIKEGGVQLLLTIVDTPGFGDAVDN-------------SN---------CWQP--------------VIDYI-D------ 116 (418)
T ss_dssp C------CEEEEEEECC---------------------------------CHH--------------HHHHH-H------
T ss_pred EEecCCcccceeeeechhhhhhccc-------------hh---------hHHH--------------HHHHH-H------
Confidence 9998888888999999877532110 00 0000 01111 1
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHHcCCc---EeEEeCCC-CCCCHHHHHHHHHHHHHHHHhCCcEEEEEEcc
Q 003389 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN---VLYMDEIS-TGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (824)
Q Consensus 330 ~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~---iLlLDEPT-sGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q 402 (824)
..++.+++||+.||++++.+|+ +|++|||| .|||+... +.++++.. +.++|++++.
T Consensus 117 -----------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~--~v~iIlVinK 176 (418)
T 2qag_C 117 -----------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE--KVNIIPLIAK 176 (418)
T ss_dssp -----------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT--TSEEEEEEES
T ss_pred -----------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc--cCcEEEEEEc
Confidence 0255677889999999999999 99999999 69998873 44455543 6677777654
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=140.93 Aligned_cols=78 Identities=13% Similarity=0.051 Sum_probs=59.9
Q ss_pred CCHHH--HHHHHHHHHHHcC-CcEeEEeCCCCCCCHH--------HHHHHHHHHHHHHHhCCcEEEEEEccCch------
Q 003389 343 ISGGQ--KKRVTTGEMLVGT-ANVLYMDEISTGLDSS--------TTFQICKFLKQMVHILDVTMIVALLQPAP------ 405 (824)
Q Consensus 343 LSGGq--rqRvsIA~aLv~~-p~iLlLDEPTsGLDs~--------t~~~I~~~L~~l~~~~~~tvIisi~q~~~------ 405 (824)
.|+++ ++++..+++++.+ |+++++||||+++|.. ...++++.|+++++..+.|+|++.|....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~ 164 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT 164 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence 44443 6788888899886 9999999999999973 33557777888887778888887664431
Q ss_pred ------hHHhhcCeEEEEcCC
Q 003389 406 ------ETYDLFDDIILLSEG 420 (824)
Q Consensus 406 ------e~~~lfD~iilL~~G 420 (824)
.+...||.+++|+..
T Consensus 165 ~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 165 KPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CSCCCHHHHHTSSEEEEEEEC
T ss_pred ccCCCcceeecCcEEEEEEEe
Confidence 467789999999754
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-14 Score=158.43 Aligned_cols=133 Identities=18% Similarity=0.265 Sum_probs=89.2
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~ 265 (824)
+|+++ .+.+|++++|+|||||||||||++|+|.+++. ..|.|...+.++ ++..+...+++.|......
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~-e~~~~~~~~~v~q~~~~~~------- 181 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPI-EFVHESKKCLVNQREVHRD------- 181 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSC-CSCCCCSSSEEEEEEBTTT-------
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcH-Hhhhhccccceeeeeeccc-------
Confidence 45544 67899999999999999999999999998763 146665444333 2222222344444311000
Q ss_pred HHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCH
Q 003389 266 LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (824)
Q Consensus 266 L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSG 345 (824)
.++-
T Consensus 182 ----------------------------------------------------------------------------~~~~ 185 (356)
T 3jvv_A 182 ----------------------------------------------------------------------------TLGF 185 (356)
T ss_dssp ----------------------------------------------------------------------------BSCH
T ss_pred ----------------------------------------------------------------------------cCCH
Confidence 0222
Q ss_pred HHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 346 GqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
.+ +||++|..+|++|++|||| |..+...+ .+.+. .|.++++++|... ..+.+||++.|..|
T Consensus 186 ~~----~La~aL~~~PdvillDEp~---d~e~~~~~----~~~~~-~G~~vl~t~H~~~--~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 186 SE----ALRSALREDPDIILVGEMR---DLETIRLA----LTAAE-TGHLVFGTLHTTS--AAKTIDRVVDVFPA 246 (356)
T ss_dssp HH----HHHHHTTSCCSEEEESCCC---SHHHHHHH----HHHHH-TTCEEEEEESCSS--HHHHHHHHHHTSCH
T ss_pred HH----HHHHHhhhCcCEEecCCCC---CHHHHHHH----HHHHh-cCCEEEEEEccCh--HHHHHHHHhhhcCc
Confidence 22 8999999999999999999 66654443 33443 5889888887655 33789999988654
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=8.8e-15 Score=151.23 Aligned_cols=150 Identities=16% Similarity=0.162 Sum_probs=96.5
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH----HHHH
Q 003389 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV----RETL 266 (824)
Q Consensus 191 s~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV----~E~L 266 (824)
.-..++|++++|+||||||||||+++|+|.++|+ ...|.|.+++.+.... .++.++|++|++..++.+|+ .|++
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 4467899999999999999999999999998752 3589999999775432 23568999997544433333 2222
Q ss_pred HHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHH
Q 003389 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (824)
Q Consensus 267 ~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGG 346 (824)
.+....+ |.|
T Consensus 88 ~~~~~~y--------------------------------------------------------------------g~~-- 97 (219)
T 1s96_A 88 EVFGNYY--------------------------------------------------------------------GTS-- 97 (219)
T ss_dssp EETTEEE--------------------------------------------------------------------EEE--
T ss_pred HHHhccC--------------------------------------------------------------------CCC--
Confidence 1111000 111
Q ss_pred HHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEec
Q 003389 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426 (824)
Q Consensus 347 qrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G 426 (824)
+++ .+.++..++++||| ||+.++.++.+.+. .+.||+++.|++ .++.+ |+ +.+| .+
T Consensus 98 -~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i~th~~-~~l~~---Rl--~~rG----~~ 153 (219)
T 1s96_A 98 -REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFILPPSK-IELDR---RL--RGRG----QD 153 (219)
T ss_dssp -HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEEECSSH-HHHHH---HH--HTTS----CS
T ss_pred -HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEEECCCH-HHHHH---HH--HHcC----CC
Confidence 111 23444557999999 99999999998876 367777766543 33333 43 6777 57
Q ss_pred ChhhHHHHHH
Q 003389 427 PRDNVLEFFE 436 (824)
Q Consensus 427 ~~~~~~~~f~ 436 (824)
+.+++...+.
T Consensus 154 ~~e~i~~rl~ 163 (219)
T 1s96_A 154 SEEVIAKRMA 163 (219)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7777765543
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-15 Score=152.41 Aligned_cols=140 Identities=16% Similarity=0.121 Sum_probs=89.2
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-CCceEEEEecCCCCCCCCCHHHHHHHhhh
Q 003389 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRETLDFSGR 271 (824)
Q Consensus 193 ~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~ 271 (824)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++.... ..+.++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999998 44 799999998753321 1234567777533 35688888876532
Q ss_pred hcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc--cccccCccCCCCCHHHHH
Q 003389 272 CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA--DTMVGDEMRRGISGGQKK 349 (824)
Q Consensus 272 ~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~--dt~vg~~~~rgLSGGqrq 349 (824)
... ..... ..++.+++.+++.... +.. ...+|+|++|
T Consensus 78 ~~~------------~~~~~------------------------~~~~~~~~~~~l~~~~~~~~~-----~~~ls~~~~~ 116 (191)
T 1zp6_A 78 RYA------------KEGYF------------------------VILDGVVRPDWLPAFTALARP-----LHYIVLRTTA 116 (191)
T ss_dssp HHH------------HTSCE------------------------EEECSCCCTTTTHHHHTTCSC-----EEEEEEECCH
T ss_pred HHh------------ccCCe------------------------EEEeccCcHHHHHHHHhcCCC-----eEEEEecCCH
Confidence 110 00000 0000000111111111 111 2349999999
Q ss_pred HHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHH
Q 003389 350 RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQM 388 (824)
Q Consensus 350 RvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l 388 (824)
|+.++|++..+|+++ +|+.....+.+.++.+
T Consensus 117 ~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 117 AEAIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp HHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 999999999999876 6887777776666554
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.5e-15 Score=150.92 Aligned_cols=65 Identities=12% Similarity=-0.033 Sum_probs=52.9
Q ss_pred HHHHcCCCcc-ccccccCccCCCCCHHHHHH-HHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 003389 321 VLKILGLDIC-ADTMVGDEMRRGISGGQKKR-VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (824)
Q Consensus 321 iL~~lgL~~~-~dt~vg~~~~rgLSGGqrqR-vsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~ 390 (824)
.++..+++.. ..+++ ..+|+||||| +..+++++.+|.++++|||||++|.....++.+.|.++.+
T Consensus 132 ~~~~~~~~~~~v~nK~-----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 132 WAVDSNIAVLVLLTKA-----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHTTCCEEEEEECG-----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHcCCCeEEEEecc-----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 4455666542 13333 2499999999 8999999999999999999999999999999999999875
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-14 Score=142.54 Aligned_cols=78 Identities=22% Similarity=0.102 Sum_probs=66.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+.++++||++|++|++++|+||||||||||+|+|+|.+ |. +|+|.++|.++......+ .+++|+..++ .+||.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 46899999999999999999999999999999999999 76 999999998874321111 2799988777 89999
Q ss_pred HHHHH
Q 003389 264 ETLDF 268 (824)
Q Consensus 264 E~L~f 268 (824)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-16 Score=159.25 Aligned_cols=173 Identities=12% Similarity=0.068 Sum_probs=108.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVG 276 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~ 276 (824)
|++++|+||||||||||+++|++ +. +|.|.++|.++... ...++++|.....+.+|+++++.+.++...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL-- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH--
Confidence 68999999999999999999997 32 78999999775432 234667776544455688888876532110
Q ss_pred hhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC--CHHHHHHHHHH
Q 003389 277 TRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTG 354 (824)
Q Consensus 277 ~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL--SGGqrqRvsIA 354 (824)
. ... .. +++.+...... +..+.+ |+|++|++.++
T Consensus 71 ----------~-~~~-----------------------~~----ild~~~~~~~~------~~~~~~~~s~g~~~~~~~i 106 (189)
T 2bdt_A 71 ----------L-AQN-----------------------DV----VLDYIAFPDEA------EALAQTVQAKVDDVEIRFI 106 (189)
T ss_dssp ----------H-TTC-----------------------EE----EEESCCCHHHH------HHHHHHHHHHCSSEEEEEE
T ss_pred ----------h-cCC-----------------------cE----EEeeccCHHHH------HHHHHHHHhcccCCCeEEE
Confidence 0 000 00 00000000000 001124 88888888877
Q ss_pred H------HHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecCh
Q 003389 355 E------MLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPR 428 (824)
Q Consensus 355 ~------aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~ 428 (824)
. +++.+|+...+|+ |||+..... .+.++.+.. .+.++|.+.|....++.+.||+|+ .+|+++.+|++
T Consensus 107 ~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~ 179 (189)
T 2bdt_A 107 ILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAG 179 (189)
T ss_dssp EEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC---
T ss_pred EEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecC
Confidence 7 8899998888884 899988877 788877753 466777766552457888999999 99999999987
Q ss_pred hhH
Q 003389 429 DNV 431 (824)
Q Consensus 429 ~~~ 431 (824)
+-+
T Consensus 180 ~~~ 182 (189)
T 2bdt_A 180 DPL 182 (189)
T ss_dssp ---
T ss_pred Cch
Confidence 654
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=6e-13 Score=132.49 Aligned_cols=78 Identities=24% Similarity=0.340 Sum_probs=65.4
Q ss_pred CCCCCHHHHHHHHHHHHHH----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 340 RRGISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv----~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
+..||||||||++||++|+ .+|++++|||||+|||+.+...+.+.|+++.+ +.++|+++|++ .+.+.||+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCH--HHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecH--HHHHhCCEEE
Confidence 4569999999999999996 45799999999999999999999999999864 45666666653 5788999998
Q ss_pred EEc--CCe
Q 003389 416 LLS--EGQ 421 (824)
Q Consensus 416 lL~--~G~ 421 (824)
.+. +|.
T Consensus 138 ~v~~~~g~ 145 (173)
T 3kta_B 138 GVSMRDGV 145 (173)
T ss_dssp EEEEETTE
T ss_pred EEEecCCE
Confidence 664 564
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-13 Score=152.84 Aligned_cols=136 Identities=16% Similarity=0.109 Sum_probs=96.0
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-CCceEEEEe-cCCCC--CCCCC
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYIS-QHDLH--HGEMT 261 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-~~~~i~yv~-Q~d~~--~~~lT 261 (824)
+++++|+.|++|++++|+||||||||||+++|+|+++|+ +|.|+++|..--... .++.++|++ |++.. ++..|
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t 240 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVT 240 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC----------CC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccccccccC
Confidence 349999999999999999999999999999999999986 999999985311111 346788988 65322 13334
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
+
T Consensus 241 ~------------------------------------------------------------------------------- 241 (361)
T 2gza_A 241 A------------------------------------------------------------------------------- 241 (361)
T ss_dssp H-------------------------------------------------------------------------------
T ss_pred H-------------------------------------------------------------------------------
Confidence 4
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|..|+.++..+|+.+++||+.. .++.+.|+.+... ..|++.++|.. .....+||+..+..|.
T Consensus 242 --------~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g-~~~~l~t~H~~--~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 242 --------ATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASG-HGGSITSCHAG--SCELTFERLALMVLQN 303 (361)
T ss_dssp --------HHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTT-CCSCEEEEECS--SHHHHHHHHHHHHTTS
T ss_pred --------HHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcC-CCeEEEEECCC--CHHHHHHHHHHHHhcc
Confidence 4444555556788999999985 2455566666542 34667777764 3677889998887764
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-13 Score=154.66 Aligned_cols=172 Identities=17% Similarity=0.133 Sum_probs=105.6
Q ss_pred ccccccceeeEEeCCeE--EEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC---CCCCceEEEEecCCCCC
Q 003389 183 SVRILKDVSGIVKPSRM--TLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE---FVPQRTCAYISQHDLHH 257 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~--~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~---~~~~~~i~yv~Q~d~~~ 257 (824)
+.+ |++||+.|++|++ ++|+||||||||||+|+|+|.. ++|.++.. ....+.++|++|++.++
T Consensus 27 ~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~-----------l~g~~~~~~~~~~~~~~i~~v~Q~~~l~ 94 (427)
T 2qag_B 27 SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK-----------FEGEPATHTQPGVQLQSNTYDLQESNVR 94 (427)
T ss_dssp --C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC-----------C-------CCSSCEEEEEEEEEEC--CE
T ss_pred Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc-----------ccCCcCCCCCccceEeeEEEEeecCccc
Confidence 345 9999999999999 9999999999999999999984 12222211 11235789999998888
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc-CCC----cccc
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLD----ICAD 332 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-gL~----~~~d 332 (824)
+.+||.||+.|+..... . ..... +..+++ ...+..|... ++. ...|
T Consensus 95 ~~ltv~D~~~~g~~~~~---~-~~~~~---------------i~~~i~----------~q~~~~L~e~~~i~r~l~~~~d 145 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINK---E-DSYKP---------------IVEFID----------AQFEAYLQEELKIRRVLHTYHD 145 (427)
T ss_dssp EEEEEEEEECCCC-CCH---H-HHSHH---------------HHHHHH----------HHHHHHHHHC--CCCCCCCSCC
T ss_pred cccchhhhhhhhhcccc---c-hhhhH---------------HHHHHH----------HHHHHHHHHHHhhhhhhccccc
Confidence 89999999977532110 0 00000 000110 1122333333 443 1123
Q ss_pred cc----cc--CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHH-HHHhCCcEEEEE
Q 003389 333 TM----VG--DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQ-MVHILDVTMIVA 399 (824)
Q Consensus 333 t~----vg--~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~-l~~~~~~tvIis 399 (824)
+. +. .+...+++-.+ +.|+++|..+++++++|||+..|.+.....+.+.+++ +.. .|..++..
T Consensus 146 ~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~-~gi~I~~i 215 (427)
T 2qag_B 146 SRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVS-NGVQIYQF 215 (427)
T ss_dssp --CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBT-TBCCCCCC
T ss_pred ccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHH-cCCcEEec
Confidence 22 11 11224577776 7899999999999999999999999998899888887 544 56666543
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.35 E-value=8e-15 Score=153.42 Aligned_cols=159 Identities=18% Similarity=0.167 Sum_probs=97.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh---cCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhh
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALA---GKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~La---G~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~ 272 (824)
++++++|+||||||||||+++|+ |...++ +|+|.++|.+... ...+.+.+++|+..+++..|+.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999 998776 8999998765321 1123345567777778888999999764321
Q ss_pred -cCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHH-Hhccch----hhhHHHHHHHcCCCccccccccCccCCCCCHH
Q 003389 273 -LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVA-VAGQET----SLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (824)
Q Consensus 273 -~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~-~~~~~~----~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGG 346 (824)
.+.+... .+ .+.. .++. +... ...... ....+.++ ....+..+ ..+||
T Consensus 102 ~~~~~~il------------~g-~~~~-~~~~-~~l~~~~~~~~vi~L~~~~~~~l-----~r~~~r~~-----~~lSg- 155 (246)
T 2bbw_A 102 RRGQHWLL------------DG-FPRT-LGQA-EALDKICEVDLVISLNIPFETLK-----DRLSRRWI-----HPPSG- 155 (246)
T ss_dssp CTTSCEEE------------ES-CCCS-HHHH-HHHHTTCCCCEEEEEECCHHHHH-----HHHHTEEE-----ETTTT-
T ss_pred cCCCeEEE------------EC-CCCC-HHHH-HHHHhhcCCCEEEEEECCHHHHH-----HHHHcCCC-----cCCCC-
Confidence 0000000 00 0000 0000 0000 000000 00000001 11122333 34898
Q ss_pred HHHHHHHHHHH-HcCCcEeEEe----CCCCCCCHHHHHHHHHHHHHHHH
Q 003389 347 QKKRVTTGEML-VGTANVLYMD----EISTGLDSSTTFQICKFLKQMVH 390 (824)
Q Consensus 347 qrqRvsIA~aL-v~~p~iLlLD----EPTsGLDs~t~~~I~~~L~~l~~ 390 (824)
|| +++ +.+|++++|| |||+|||..+...+.+.|+++.+
T Consensus 156 ---rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 156 ---RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp ---EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred ---Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 66 677 9999999999 99999999999999999998865
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.7e-13 Score=138.32 Aligned_cols=61 Identities=10% Similarity=0.162 Sum_probs=42.9
Q ss_pred cCCcEeEEeCCCCCCCHH-------H-----HHHHHHHHHHHHHhCCcEEEEEEccCchh-------------------H
Q 003389 359 GTANVLYMDEISTGLDSS-------T-----TFQICKFLKQMVHILDVTMIVALLQPAPE-------------------T 407 (824)
Q Consensus 359 ~~p~iLlLDEPTsGLDs~-------t-----~~~I~~~L~~l~~~~~~tvIisi~q~~~e-------------------~ 407 (824)
.+|+++++|||++.+|+. . ..++++.|+++++..++|+|++.|.. .+ +
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~-~~~~~~~~~~~~~~~~~g~~~~ 196 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVV-AQVDGAAMFAADPKKPIGGNII 196 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeee-ecCCCccccCCCcccCCccChh
Confidence 589999999999999975 3 45677778888876788888875532 22 2
Q ss_pred HhhcCeEEEEcCC
Q 003389 408 YDLFDDIILLSEG 420 (824)
Q Consensus 408 ~~lfD~iilL~~G 420 (824)
..+||.+++|+.|
T Consensus 197 ~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 197 AHASTTRLYLRKG 209 (243)
T ss_dssp CCTTCEEEEEEEC
T ss_pred hhcCcEEEEEEEc
Confidence 2379999999865
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.7e-13 Score=150.96 Aligned_cols=132 Identities=17% Similarity=0.257 Sum_probs=94.7
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 264 (824)
.+|++++ +++|++++|+||||||||||+++|+|.+++. .+|+|.+.|.++. ...++.++||+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~---------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQRE---------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEE----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeee----------
Confidence 3678776 7999999999999999999999999998762 2699988776653 33345577787741
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
+|++ ...+
T Consensus 191 ------------------------------------------------------------~g~~-----------~~~~- 198 (372)
T 2ewv_A 191 ------------------------------------------------------------VGED-----------TKSF- 198 (372)
T ss_dssp ------------------------------------------------------------BTTT-----------BSCS-
T ss_pred ------------------------------------------------------------cCCC-----------HHHH-
Confidence 0110 0113
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
+.+|+++|..+|+++++|||+ |..+... .++.. ..|.++++++|.. ++.+.+||++.|.
T Consensus 199 -----~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~~--~~g~~vi~t~H~~--~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 -----ADALRAALREDPDVIFVGEMR---DLETVET---ALRAA--ETGHLVFGTLHTN--TAIDTIHRIVDIF 257 (372)
T ss_dssp -----HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHHH--TTTCEEEECCCCC--SHHHHHHHHHHTS
T ss_pred -----HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHHH--hcCCEEEEEECcc--hHHHHHHHHHHhc
Confidence 468999999999999999999 7766443 34432 2477877766653 4677788876654
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.4e-15 Score=162.76 Aligned_cols=156 Identities=15% Similarity=0.130 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc--------CCCCCCcceEeeCCcccCCCCC------------------CceEEEE-
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL--------GKDLRASGKITYCGHELNEFVP------------------QRTCAYI- 250 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l--------~~~~~~sG~I~~nG~~~~~~~~------------------~~~i~yv- 250 (824)
++++|+|+||||||||||.|.|.. .++ .|+|.++|.++..... .+.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 689999999999999999999986 444 8999999988754311 1235555
Q ss_pred --ecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHh-HHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCC
Q 003389 251 --SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAEL-SRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (824)
Q Consensus 251 --~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~-~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL 327 (824)
+|+..++++.+|.||..++.. ..+...+ ...+. .....++.++..+++
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p-------~~~~~~~~~~~~~----------------------~~~~~l~~~l~~vd~ 132 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADP-------GPIIQTFFSHEVL----------------------CQRYLLDGVIALVDA 132 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCH-------HHHHHHHHHSHHH----------------------HHHEEEEEEEEEEET
T ss_pred hHHhcCCCCCCEEEEeCCCCCCH-------HHHHHHHhcCccc----------------------cCeEEECCEEEEEEH
Confidence 465555566677776654310 0000000 00000 000011112334444
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCc
Q 003389 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (824)
Q Consensus 328 ~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~ 404 (824)
.+..+... .+|+||+||+..+++++.+|+++ ||| .++.+.|+++. .+.+++++.|.+.
T Consensus 133 ~~~~~~~~------~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~ 190 (318)
T 1nij_A 133 VHADEQMN------QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDI 190 (318)
T ss_dssp TTHHHHHH------HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCC
T ss_pred HHHHHHHh------hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCC
Confidence 44444433 38999999998888888888887 888 67888888875 3778888877654
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-13 Score=157.77 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=68.8
Q ss_pred ccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC------C---CCceEEEEecCCCCC
Q 003389 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF------V---PQRTCAYISQHDLHH 257 (824)
Q Consensus 187 L~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~------~---~~~~i~yv~Q~d~~~ 257 (824)
-+++|+.+++|++++|+||||||||||+++|+|++.+. +|+|.++|.+.... . .++.++|++|+....
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999999876 89999987765321 0 135689999998888
Q ss_pred CCCCHHHHHHHhh
Q 003389 258 GEMTVRETLDFSG 270 (824)
Q Consensus 258 ~~lTV~E~L~f~a 270 (824)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999998863
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.2e-15 Score=145.38 Aligned_cols=139 Identities=18% Similarity=0.173 Sum_probs=85.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CC-ceEE----EEecCCCCCCCCCHHHHH
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQ-RTCA----YISQHDLHHGEMTVRETL 266 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~-~~i~----yv~Q~d~~~~~lTV~E~L 266 (824)
++++|+|+||||||||+++|+|++++.....|.|.++|+++.+.. .+ +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999999874333799999998854332 11 2355 778765443 000
Q ss_pred HHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHH
Q 003389 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (824)
Q Consensus 267 ~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGG 346 (824)
+ . .+. ....+++++. .|+ ..||.+++ +||||
T Consensus 77 -------~--~--------------------~~~--------------~a~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 -------V--S--------------------EEE--------------GNDLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp -------C--C--------------------HHH--------------HTCHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred -------C--C--------------------hhh--------------hhCHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 0 0 000 0012233443 133 57999987 59999
Q ss_pred HHHHHHHHHHHHcCCcEe-------EEeCCCCC---CCHHHHHHHHHHHHHHHHh
Q 003389 347 QKKRVTTGEMLVGTANVL-------YMDEISTG---LDSSTTFQICKFLKQMVHI 391 (824)
Q Consensus 347 qrqRvsIA~aLv~~p~iL-------lLDEPTsG---LDs~t~~~I~~~L~~l~~~ 391 (824)
||||++|||+++.+|++. .-|.|..+ +|......+.+.+.+...+
T Consensus 108 q~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~~ 162 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLRE 162 (171)
T ss_dssp CCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHTC
T ss_pred CCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHhc
Confidence 999999999999999873 23454322 3445567777777666553
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.28 E-value=3.6e-13 Score=148.54 Aligned_cols=122 Identities=16% Similarity=0.081 Sum_probs=82.0
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-CCCCCcceEeeC-CcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG-KDLRASGKITYC-GHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~-~~~~~sG~I~~n-G~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
-+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.+... ...+.+++++|+..++++.||+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHH
Confidence 46677765 4899999999999999999999999998 76 9999987 765432 2346789999998888888999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
|+ .. .+.. ..+. ...+.++++.+|+.+..|..+. ++
T Consensus 280 e~---~l--~~l~----------~~e~------------------------~~~~~e~l~~~gl~~f~~~~~~-----~l 315 (358)
T 2rcn_A 280 EF---GL--WHLE----------PEQI------------------------TQGFVEFHDYLGHCKYRDCKHD-----AD 315 (358)
T ss_dssp TC---CC--CCCC----------HHHH------------------------HHTSGGGGGGTTCSSSTTCCSS-----SC
T ss_pred Hh---hh--cCCC----------HHHH------------------------HHHHHHHHHHcCCchhcCCCcc-----cC
Confidence 83 21 1110 0000 0123446778888877776655 49
Q ss_pred CHHHHHHHHHHHHH
Q 003389 344 SGGQKKRVTTGEML 357 (824)
Q Consensus 344 SGGqrqRvsIA~aL 357 (824)
| ||+||++||+++
T Consensus 316 S-G~~~r~ala~gl 328 (358)
T 2rcn_A 316 P-GCAIREAVENGA 328 (358)
T ss_dssp T-TCHHHHHHHHTS
T ss_pred C-HHHHHHHHHhcC
Confidence 9 999999999764
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=9.3e-14 Score=152.66 Aligned_cols=180 Identities=15% Similarity=0.105 Sum_probs=110.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-------CCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~i~yv~Q~d~~ 256 (824)
..+|+++|+.+++|++++|+||||||||||+++|+|.+.|. +|+|.+.|.++.... .++.++|++|++..
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 46899999999999999999999999999999999999886 899999998764321 24568999998777
Q ss_pred CCCC------------CHHHHHHHh-h-hh-------cCCchhhHHHHHhHHHHHhcCC-----CCChhHHHHHHHHHHh
Q 003389 257 HGEM------------TVRETLDFS-G-RC-------LGVGTRYELLAELSRREKQAGI-----KPDPEIDAFMKAVAVA 310 (824)
Q Consensus 257 ~~~l------------TV~E~L~f~-a-~~-------~~~~~~~~~~~~~~~~e~~~~i-----~~~~~~~~~~~~~~~~ 310 (824)
+... +++|.+... . .. -|..... ..-. ....+ .+.. .+.. .
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~-----~~v~-~~~d~vl~v~d~~~-~~~~------~ 185 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSE-----TAVA-DLTDFFLVLMLPGA-GDEL------Q 185 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH-----HHHH-TTSSEEEEEECSCC------------
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcch-----hhHH-hhCCEEEEEEcCCC-cccH------H
Confidence 6532 233333110 0 00 0111000 0000 00000 0000 0000 0
Q ss_pred ccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHc------CCcEeEEeCCCCCCCHHHHHHHHHH
Q 003389 311 GQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG------TANVLYMDEISTGLDSSTTFQICKF 384 (824)
Q Consensus 311 ~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~------~p~iLlLDEPTsGLDs~t~~~I~~~ 384 (824)
.. .....++...+.+ +..|.. ..+.+|+|++|++..+.+++. .|++++ +|++|.....++.+.
T Consensus 186 ~i--~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~ 254 (337)
T 2qm8_A 186 GI--KKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSR 254 (337)
T ss_dssp -C--CTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHH
T ss_pred HH--HHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHH
Confidence 00 0001111222222 222211 013479999999999998887 588887 999999999999999
Q ss_pred HHHHHH
Q 003389 385 LKQMVH 390 (824)
Q Consensus 385 L~~l~~ 390 (824)
|.++..
T Consensus 255 I~~~~~ 260 (337)
T 2qm8_A 255 IEDHRS 260 (337)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.8e-13 Score=147.11 Aligned_cols=164 Identities=14% Similarity=0.149 Sum_probs=106.4
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---------CceEEEEecCCCCCCCCCHHH
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---------QRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---------~~~i~yv~Q~d~~~~~lTV~E 264 (824)
.++|++++|+||||||||||++.|+|++++. +|+|.++|.++..... +..+.+++|+....|.+||+|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 4789999999999999999999999999886 9999999988753221 123569999988899999999
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
++.++.... . + . . +++..|+.+..+... +.||
T Consensus 203 ~l~~~~~~~-~---------------------d-----------------~-v---liDtaG~~~~~~~l~-----~eL~ 234 (328)
T 3e70_C 203 AIQHAKARG-I---------------------D-----------------V-V---LIDTAGRSETNRNLM-----DEMK 234 (328)
T ss_dssp HHHHHHHHT-C---------------------S-----------------E-E---EEEECCSCCTTTCHH-----HHHH
T ss_pred HHHHHHhcc-c---------------------h-----------------h-h---HHhhccchhHHHHHH-----HHHH
Confidence 998753210 0 0 0 0 011122222111111 1132
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCch--------hHHhhcCeEEE
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP--------ETYDLFDDIIL 416 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~--------e~~~lfD~iil 416 (824)
.+++++..++.+++||.+| | .++++.++.+.+..+.|+|+.++-+.. -.....-.|..
T Consensus 235 -------~i~ral~~de~llvLDa~t-~------~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~ 300 (328)
T 3e70_C 235 -------KIARVTKPNLVIFVGDALA-G------NAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILF 300 (328)
T ss_dssp -------HHHHHHCCSEEEEEEEGGG-T------THHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEE
T ss_pred -------HHHHHhcCCCCEEEEecHH-H------HHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEE
Confidence 3788888777777777444 3 466667777776668888887764421 11223345666
Q ss_pred EcCCeE
Q 003389 417 LSEGQI 422 (824)
Q Consensus 417 L~~G~i 422 (824)
+..|+-
T Consensus 301 i~~Ge~ 306 (328)
T 3e70_C 301 VGVGQG 306 (328)
T ss_dssp EECSSS
T ss_pred EeCCCC
Confidence 666654
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.23 E-value=7.8e-13 Score=142.31 Aligned_cols=132 Identities=16% Similarity=0.211 Sum_probs=83.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhhcC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG 274 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~ 274 (824)
+++.+++|.||+|||||||.+.|++.+.+ .| . ..+.+.+|+|++.+++. ++++|+.++..-.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C------CCceEEEeccccccCCh-HHHHHHhccccccc
Confidence 47889999999999999999999999865 23 0 12446666999888765 88999887521000
Q ss_pred CchhhHHHHHhHHHHHhcCCCCC-hhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc------cccCccCCCCCHHH
Q 003389 275 VGTRYELLAELSRREKQAGIKPD-PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT------MVGDEMRRGISGGQ 347 (824)
Q Consensus 275 ~~~~~~~~~~~~~~e~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt------~vg~~~~rgLSGGq 347 (824)
.-. . .+ .|+ .+.+. ....++.+.-. .+| .+. .....+||||
T Consensus 92 l~~---------~----~g-~p~a~d~~~---------------l~~~l~~l~~g--~~t~~~~~v~~p-~y~~~~sgGq 139 (290)
T 1odf_A 92 LLQ---------G----RG-LPGTHDMKL---------------LQEVLNTIFNN--NEHPDQDTVVLP-KYDKSQFKGE 139 (290)
T ss_dssp GGS---------S----SC-STTSBCHHH---------------HHHHHHHHTC--------CCEEEEC-CEETTHHHHT
T ss_pred hhh---------h----cc-CcchhHHHH---------------HHHHHHHhhcc--CccccCcceeec-cCccccCCcc
Confidence 000 0 00 011 11111 22234444321 111 111 2335799999
Q ss_pred HHHHHHH--HHHHcCCcEeEEeCCCCCCCHHH
Q 003389 348 KKRVTTG--EMLVGTANVLYMDEISTGLDSST 377 (824)
Q Consensus 348 rqRvsIA--~aLv~~p~iLlLDEPTsGLDs~t 377 (824)
+||+.+| +++ +|+|||+|||++++|+..
T Consensus 140 ~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 140 GDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccccccccceEc--CCCEEEEeCccccCCccc
Confidence 9999997 555 999999999999999853
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-12 Score=128.98 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=40.4
Q ss_pred HcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh
Q 003389 358 VGTANVLYMDEIST-GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (824)
Q Consensus 358 v~~p~iLlLDEPTs-GLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e 406 (824)
+.+|++|+||||++ ++|+.....+.+.+.+... .++++|++.|++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 34899999999986 9999999999999988764 478999988877654
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=4.8e-13 Score=150.69 Aligned_cols=169 Identities=13% Similarity=0.139 Sum_probs=101.7
Q ss_pred ccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHH
Q 003389 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETL 266 (824)
Q Consensus 187 L~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L 266 (824)
-++|++++++|+.++|+|+|||||||||++|+|..+ .+.+.+.+.. ...+++|.+++. ..+++.++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl--~p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTL--SPNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSS--CCEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCccccee--cceeeEEEecCc--ceEEEEecc
Confidence 479999999999999999999999999999998742 2334333322 234666666541 111222211
Q ss_pred HH---hhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 267 DF---SGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 267 ~f---~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
-+ +....+.+.. +.+. ...++.++..+++. +..+ ..+
T Consensus 214 Gli~~a~~~~~L~~~------------------------fl~~--------~era~~lL~vvDls---~~~~-----~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGLE------------------------FLRH--------IARTRVLLYVLDAA---DEPL-----KTL 253 (416)
T ss_dssp CCCCCGGGSCCSCHH------------------------HHHH--------HTSSSEEEEEEETT---SCHH-----HHH
T ss_pred ccccchhhhhhhhHH------------------------HHHH--------HHHHHhhhEEeCCc---cCCH-----HHH
Confidence 11 0000011000 0000 00112233334443 2223 349
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
|+|++|++.++++|+..|.++++ +++|.... ..++.+++..+..+.+++.++.+....+.++++.
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 99999999999999999999999 99999877 5556666655545667776655544455555543
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-13 Score=159.78 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=66.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
..+++++++.+++|+.++|+|||||||||||++|+|+++|+ +|.|+++|.+--.......++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 45889999999999999999999999999999999999887 999999986522221235577777765534456888
Q ss_pred HHHHHhhh
Q 003389 264 ETLDFSGR 271 (824)
Q Consensus 264 E~L~f~a~ 271 (824)
+.+..+.+
T Consensus 324 ~~l~~~LR 331 (511)
T 2oap_1 324 DLLRAALR 331 (511)
T ss_dssp HHHHTTGG
T ss_pred HHHHHhhc
Confidence 88776554
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.5e-11 Score=132.82 Aligned_cols=75 Identities=23% Similarity=0.350 Sum_probs=65.1
Q ss_pred CCCCCHHHHHHH------HHHHHHHcC-CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 340 RRGISGGQKKRV------TTGEMLVGT-ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 340 ~rgLSGGqrqRv------sIA~aLv~~-p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+..+|||||||+ ++|++|+.+ |++|+|||||+|||+.++..+.+.|+++.+ +.+++++.|++ ++...||
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~vi~~th~~--~~~~~~d 353 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS--IPQMIIITHHR--ELEDVAD 353 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS--CSEEEEEESCG--GGGGGCS
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc--CCeEEEEEChH--HHHhhCC
Confidence 457999999988 557889999 999999999999999999999999998743 46788887775 4678999
Q ss_pred eEEEEc
Q 003389 413 DIILLS 418 (824)
Q Consensus 413 ~iilL~ 418 (824)
++++|+
T Consensus 354 ~~~~l~ 359 (371)
T 3auy_A 354 VIINVK 359 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.8e-12 Score=136.25 Aligned_cols=125 Identities=12% Similarity=0.067 Sum_probs=80.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEee---CCcccCCCCC---CceEEEEecCCCCC-----CCCCH
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY---CGHELNEFVP---QRTCAYISQHDLHH-----GEMTV 262 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~---nG~~~~~~~~---~~~i~yv~Q~d~~~-----~~lTV 262 (824)
+.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|++.+.... .+.++|++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 3469999999999999999999999 88886 999999 9987754321 13579999998553 78899
Q ss_pred HHHH--HHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc-cccccccCcc
Q 003389 263 RETL--DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGDEM 339 (824)
Q Consensus 263 ~E~L--~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~ 339 (824)
|++ .|.. .. .+.. +-.+-.+. .+....++++++.++|.+ .++..+.
T Consensus 238 -e~l~~~f~~-~~----------~~~c--~~~~~~~~--------------~e~~~~v~~~l~~~~L~~~~~~~~~~--- 286 (302)
T 2yv5_A 238 -REVRNYFRE-FL----------RYQC--KYPDCTHT--------------NEPGCAVKEAVKNGEISCERYKSYLK--- 286 (302)
T ss_dssp -GGGGGGCGG-GH----------HHHH--HSTTCCSS--------------SCTTCHHHHHHHTTSSCHHHHHHHHH---
T ss_pred -HHHHHHHHH-HH----------HccC--CCCCCCCC--------------CCCCCHHHHHHHcCCCCHHHHHHHHH---
Confidence 888 4431 00 0000 00000000 011224677889999986 6676665
Q ss_pred CCCCCHHHHHHHHHHH
Q 003389 340 RRGISGGQKKRVTTGE 355 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~ 355 (824)
.|||.++|++.|||
T Consensus 287 --~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 287 --IIKVYLEEIKELCR 300 (302)
T ss_dssp --HTTCCCTTHHHHSS
T ss_pred --HHHHHHHHHHHHhc
Confidence 49998899999986
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-11 Score=136.87 Aligned_cols=63 Identities=10% Similarity=0.099 Sum_probs=47.3
Q ss_pred cCCcEeEEeCCCCCCCHHHH------------HHHHHHHHHHHHhCCcEEEEEEccCc------------------hhHH
Q 003389 359 GTANVLYMDEISTGLDSSTT------------FQICKFLKQMVHILDVTMIVALLQPA------------------PETY 408 (824)
Q Consensus 359 ~~p~iLlLDEPTsGLDs~t~------------~~I~~~L~~l~~~~~~tvIisi~q~~------------------~e~~ 408 (824)
.+|+++++|||++.+|+... .++++.|+++++..+.|+|++.|... ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 46999999999999997543 67889999999888999999877511 2245
Q ss_pred hhcCeEEEEcCCe
Q 003389 409 DLFDDIILLSEGQ 421 (824)
Q Consensus 409 ~lfD~iilL~~G~ 421 (824)
..+|.++.|..|+
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 6789999998763
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=9.4e-13 Score=148.50 Aligned_cols=139 Identities=17% Similarity=0.139 Sum_probs=91.8
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-------CCceEEEEe----
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYIS---- 251 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~i~yv~---- 251 (824)
...+|+++ +. ++|++++|+|||||||||||++|+|.+++. +|+|.+.|.++.... ..+.+++.+
T Consensus 155 ~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~l 229 (418)
T 1p9r_A 155 NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGL 229 (418)
T ss_dssp HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHH
T ss_pred HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHH
Confidence 35588888 54 899999999999999999999999999886 899999998774211 112344544
Q ss_pred -----cCCCC--CCC----CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHH
Q 003389 252 -----QHDLH--HGE----MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY 320 (824)
Q Consensus 252 -----Q~d~~--~~~----lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (824)
|++.. +++ .|+.+++.++..-+.+-.. +... + .. .+..
T Consensus 230 r~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~t---------------lh~~-~--------------~~-~~i~ 278 (418)
T 1p9r_A 230 RAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMST---------------LHTN-T--------------AV-GAVT 278 (418)
T ss_dssp HHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEE---------------ECCS-S--------------SH-HHHH
T ss_pred HHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccc---------------cchh-h--------------HH-HHHH
Confidence 77654 354 5788888765321100000 0000 0 00 0112
Q ss_pred HHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEE
Q 003389 321 VLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYM 366 (824)
Q Consensus 321 iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlL 366 (824)
.|..+|++... .. ..|||||+|| ||++|+.+|++..-
T Consensus 279 rL~~lgl~~~~--~~-----~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 279 RLRDMGIEPFL--IS-----SSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHHHHTCCHHH--HH-----HHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHcCCcHHH--HH-----HHHHHHHHHH--hhhhhcCCCCccCC
Confidence 35667876542 22 3599999999 99999999998763
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.09 E-value=7.7e-11 Score=129.01 Aligned_cols=136 Identities=18% Similarity=0.206 Sum_probs=71.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc-CcCCCCCCcceEeeCCcccCCCC-CCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCch
Q 003389 200 TLLLGPPGAGKTTLMLALAG-KLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGT 277 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG-~l~~~~~~sG~I~~nG~~~~~~~-~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~ 277 (824)
++|.||||+|||||+++|+| ++.++ .|+|.++|.+..... .+..+++++|.+.+.-..+ + .+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~- 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------MGNN- 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------C-
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h--------cCCc-
Confidence 89999999999999999999 66665 899999997764321 1356788888653311100 0 0000
Q ss_pred hhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 003389 278 RYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357 (824)
Q Consensus 278 ~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aL 357 (824)
+. ..+...++.+......+..+ .+|| +
T Consensus 105 -------------------~~-----------------~~~~~~i~~~~~~~~~~~~~------~ls~-----------l 131 (354)
T 1sxj_E 105 -------------------DR-----------------IVIQELLKEVAQMEQVDFQD------SKDG-----------L 131 (354)
T ss_dssp -------------------CH-----------------HHHHHHHHHHTTTTC---------------------------
T ss_pred -------------------ch-----------------HHHHHHHHHHHHhccccccc------cccc-----------c
Confidence 00 00111122221110011111 2566 7
Q ss_pred HcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCch
Q 003389 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP 405 (824)
Q Consensus 358 v~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~ 405 (824)
..+|+++++|||++ ||..+...+.+.|.+.. .+.++|++.|++..
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMSP 176 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSCS
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHH
Confidence 88999999999999 99999999999999864 36778888777653
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-12 Score=131.63 Aligned_cols=30 Identities=37% Similarity=0.529 Sum_probs=28.3
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
.++|++++|+||||||||||+++|+|++++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 579999999999999999999999999875
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-12 Score=142.12 Aligned_cols=157 Identities=21% Similarity=0.276 Sum_probs=101.4
Q ss_pred ccccccceeeEEeCC-------eEEEEEcCCCCcHHHHHHHHhcCcCCCC-CCcceEeeCCcccCCC---CCCceEEEEe
Q 003389 183 SVRILKDVSGIVKPS-------RMTLLLGPPGAGKTTLMLALAGKLGKDL-RASGKITYCGHELNEF---VPQRTCAYIS 251 (824)
Q Consensus 183 ~~~IL~~vs~~I~~G-------e~~aLlGpnGSGKSTLL~~LaG~l~~~~-~~sG~I~~nG~~~~~~---~~~~~i~yv~ 251 (824)
...+++++++.+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..+|.++... ..++.+.++.
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 456888999988876 8899999999999999999999873211 1378887777665321 1245689999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc
Q 003389 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (824)
Q Consensus 252 Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (824)
|.+.+.+ ++.|++.......+.. .. .... + ....++..+..++|.. +
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~----i~--~~~~---------~---------------~~~~i~~~l~~~~li~-a 156 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQID----IM--IGKG---------P---------------SAKSIRIDIQPFTLVG-A 156 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCC----C-----------------------------------------CCCEEEE-E
T ss_pred chhhcCH--HHHHHHHHHHHhcccc----ee--eccC---------c---------------ccccccccCCCeEEEE-e
Confidence 9776655 7888885432211100 00 0000 0 0011222344455544 5
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD 393 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~ 393 (824)
++.++ .||+|+|||+.++ .+||+.+..++.+.|++.++..+
T Consensus 157 t~~~~-----~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~ 197 (334)
T 1in4_A 157 TTRSG-----LLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD 197 (334)
T ss_dssp ESCGG-----GSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT
T ss_pred cCCcc-----cCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC
Confidence 55555 4999999998554 78889899999999999887544
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.5e-10 Score=110.59 Aligned_cols=47 Identities=9% Similarity=0.132 Sum_probs=34.8
Q ss_pred HcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE-EEEEEccCchh
Q 003389 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVT-MIVALLQPAPE 406 (824)
Q Consensus 358 v~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~t-vIisi~q~~~e 406 (824)
+.+|++|++|||++ +|...+..+.+.+.++... +++ +|++.+.+..+
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~-g~~~iiits~~~p~~ 128 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNS-GKGFLLLGSEYTPQQ 128 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHH-TCCEEEEEESSCTTT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHc-CCcEEEEECCCCHHH
Confidence 45689999999998 6665588888999887764 566 77766655433
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.03 E-value=2.6e-13 Score=151.56 Aligned_cols=168 Identities=14% Similarity=0.136 Sum_probs=113.9
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcC------------cCCCCCCcceEeeCCcccCC----CCCCceE---EEEecC
Q 003389 193 IVKPSRMTLLLGPPGAGKTTLMLALAGK------------LGKDLRASGKITYCGHELNE----FVPQRTC---AYISQH 253 (824)
Q Consensus 193 ~I~~Ge~~aLlGpnGSGKSTLL~~LaG~------------l~~~~~~sG~I~~nG~~~~~----~~~~~~i---~yv~Q~ 253 (824)
.+++|..++|+|+||||||||+|+|+|. ..| ..|.|.++|..++. +.+++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p---~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDP---EEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCT---TEEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecc---eeeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 5678999999999999999999999993 234 48999999854321 2233333 467777
Q ss_pred CCCCCCCCHHHHH--HHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc
Q 003389 254 DLHHGEMTVRETL--DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (824)
Q Consensus 254 d~~~~~lTV~E~L--~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (824)
+.+...++..|++ .|...++.. +.++..+....
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~-------------------------------------------d~il~Vvd~~~-- 127 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAV-------------------------------------------DAIYQVVRAFD-- 127 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTC-------------------------------------------SEEEEEEECCC--
T ss_pred cccccCCcHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHhccc--
Confidence 7777777765544 332211110 00111111111
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHH-HHhCCcEEEEEEccCchhHH
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQM-VHILDVTMIVALLQPAPETY 408 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~I~~~L~~l-~~~~~~tvIisi~q~~~e~~ 408 (824)
+..+..+||+. +| +++++|||+.++|.......++.++.+ .+ .|.|++ .|...++.
T Consensus 128 -----d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~ti~---sh~~~~~~ 186 (392)
T 1ni3_A 128 -----DAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANTLE---MKAKKEEQ 186 (392)
T ss_dssp -----TTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCSSS---HHHHHHHH
T ss_pred -----cceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCccc---cccHHHHH
Confidence 12223366653 88 999999999999999999999999887 54 455643 34566788
Q ss_pred hhcCeEE-EEcCC-eEEEecChh
Q 003389 409 DLFDDII-LLSEG-QIVYQGPRD 429 (824)
Q Consensus 409 ~lfD~ii-lL~~G-~iv~~G~~~ 429 (824)
++||++. +|.+| ++++.|+.+
T Consensus 187 ~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 187 AIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHHHHhccCCceeecCCCC
Confidence 9999999 99999 998877643
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.6e-13 Score=137.61 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=43.4
Q ss_pred HHH-HHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 353 TGE-MLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 353 IA~-aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.++ +++.+|++++|||+|+++|..+...|.+.|.+..+.. .+.| . . ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~-~--~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK-E--P-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG-S--T-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh-c--c-CCceEEEECCC
Confidence 445 6788899999999999999999999999998876532 1112 1 2 56999988864
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.01 E-value=3e-11 Score=130.55 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=51.7
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEee---CCcccCCCCC---CceEEEEecCCC----------
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY---CGHELNEFVP---QRTCAYISQHDL---------- 255 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~---nG~~~~~~~~---~~~i~yv~Q~d~---------- 255 (824)
+.+.+|++++|+||||||||||||+|+|+..|. +|+|.+ +|++++.... .+.++||+|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~ 240 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIE 240 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCC
Confidence 345579999999999999999999999999987 999999 8987754321 135799999874
Q ss_pred ------CCCCCCHHHHHHHh
Q 003389 256 ------HHGEMTVRETLDFS 269 (824)
Q Consensus 256 ------~~~~lTV~E~L~f~ 269 (824)
++|++|| ||+.|.
T Consensus 241 ~~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 241 PEELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHHhccc-ccCcCC
Confidence 5788899 888875
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-13 Score=144.23 Aligned_cols=142 Identities=18% Similarity=0.182 Sum_probs=93.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCC-CCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD-LHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d-~~~~~ 259 (824)
..+++++++.+++| ++|+||||||||||+++|+|.+.+ |.|.++|.++..... .+.+++++|.. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 46899999999999 999999999999999999998753 789999987643221 23456666653 34455
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+++.|++.+.+..++. .. .+ .+....++.+
T Consensus 106 i~~~Deid~~~~~r~~--------------~~--------------------------~~------~~~~~~~~~l---- 135 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSD--------------RE--------------------------TG------ASVRVVNQLL---- 135 (274)
T ss_dssp EEEEETCTTTCC-------------------------------------------------------CTTHHHHHH----
T ss_pred eEeeehhhhhhcccCC--------------Cc--------------------------ch------HHHHHHHHHH----
Confidence 5555555442211000 00 00 0111112222
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCC------------CCCHHHHHHHHHHH
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEIST------------GLDSSTTFQICKFL 385 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTs------------GLDs~t~~~I~~~L 385 (824)
..|||||+||+.+++++..+|++| ||++. -.|...+.+|++.+
T Consensus 136 -~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 136 -TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp -HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred -HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 249999999999999999999986 98864 23556666655543
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-10 Score=123.30 Aligned_cols=72 Identities=21% Similarity=0.295 Sum_probs=44.3
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEee---CCcccCCCCC-Cce-EEEEecCCCCCC----CCCH
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY---CGHELNEFVP-QRT-CAYISQHDLHHG----EMTV 262 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~---nG~~~~~~~~-~~~-i~yv~Q~d~~~~----~lTV 262 (824)
+.+.+|++++|+||||+|||||+|+|+|...+. +|+|.+ +|+..+.... .+. .+|++|.+.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 445689999999999999999999999999886 999999 8877653221 122 699999987655 6899
Q ss_pred HHHHH
Q 003389 263 RETLD 267 (824)
Q Consensus 263 ~E~L~ 267 (824)
|++.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 8883
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.88 E-value=9.6e-09 Score=105.94 Aligned_cols=61 Identities=21% Similarity=0.102 Sum_probs=46.6
Q ss_pred cCCcEeEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh-------HHhhcCeEEEEcC
Q 003389 359 GTANVLYMDEISTGL--DSSTTFQICKFLKQMVHILDVTMIVALLQPAPE-------TYDLFDDIILLSE 419 (824)
Q Consensus 359 ~~p~iLlLDEPTsGL--Ds~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e-------~~~lfD~iilL~~ 419 (824)
.+|+++++|+|++.+ |.....+++..|.+++++.++|++++.|..... +.+.+|.|+.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 665567777778888777788998876654421 4678899999964
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.9e-10 Score=124.66 Aligned_cols=73 Identities=11% Similarity=0.135 Sum_probs=60.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEee---CCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHh
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITY---CGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFS 269 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~---nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~ 269 (824)
++|++++|+||||||||||+++|+|++. |+ +|+|.+ +|...... ..+.++++ |+..+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 8999999999999999999999999987 76 899999 88764321 13456788 877788889999999886
Q ss_pred hhh
Q 003389 270 GRC 272 (824)
Q Consensus 270 a~~ 272 (824)
..+
T Consensus 153 ~~l 155 (308)
T 1sq5_A 153 SDL 155 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-09 Score=116.99 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=80.3
Q ss_pred eeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHh
Q 003389 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFS 269 (824)
Q Consensus 190 vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~ 269 (824)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. +. ...|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~-----r~--------------~a~eqL--- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF-----RA--------------AAIEQL--- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT-----CH--------------HHHHHH---
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc-----cH--------------HHHHHH---
Confidence 45567899999999999999999999999998764 677877665421 10 001111
Q ss_pred hhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 003389 270 GRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKK 349 (824)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrq 349 (824)
..+++.+|++. + ...|||+.+
T Consensus 152 -------------------------------------------------~~~~~~~gl~~-----~-----~~~s~~~~~ 172 (306)
T 1vma_A 152 -------------------------------------------------KIWGERVGATV-----I-----SHSEGADPA 172 (306)
T ss_dssp -------------------------------------------------HHHHHHHTCEE-----E-----CCSTTCCHH
T ss_pred -------------------------------------------------HHHHHHcCCcE-----E-----ecCCccCHH
Confidence 11233455542 1 236899999
Q ss_pred HH---HHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 003389 350 RV---TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (824)
Q Consensus 350 Rv---sIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~ 390 (824)
++ ++++++..+|+++++|||.. ......+++.|+++.+
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~~ 213 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVHR 213 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHHH
Confidence 99 89999999999999999974 3445566666666544
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1e-09 Score=125.35 Aligned_cols=53 Identities=21% Similarity=0.097 Sum_probs=49.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE 240 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~ 240 (824)
..+|+|||+.|++ ++++|+|||||||||||++|+|+++|+ +|+|.++|+++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEccc
Confidence 4589999999999 999999999999999999999999997 9999999998754
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.84 E-value=2e-09 Score=122.81 Aligned_cols=185 Identities=15% Similarity=0.157 Sum_probs=111.2
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
.+...|+++.+-+++|+++.|.|+||+|||||+..|++...+. .| ..+.|+.-+ ++
T Consensus 188 tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~E------~s 243 (454)
T 2r6a_A 188 TGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSLE------MS 243 (454)
T ss_dssp CSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEESS------SC
T ss_pred CCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEECC------CC
Confidence 3456899999999999999999999999999999999865431 22 124455432 33
Q ss_pred HHHHHHHh-hhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 262 VRETLDFS-GRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 262 V~E~L~f~-a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
..+...-. +...+... ..+ +...+ .+.+.+ .+...++.++..+.. +-+ .
T Consensus 244 ~~~l~~r~~~~~~~~~~-----~~l----~~g~l-~~~~~~---------------~~~~a~~~l~~~~l~---i~d--~ 293 (454)
T 2r6a_A 244 AQQLVMRMLCAEGNINA-----QNL----RTGKL-TPEDWG---------------KLTMAMGSLSNAGIY---IDD--T 293 (454)
T ss_dssp HHHHHHHHHHHHHTCCH-----HHH----HTSCC-CHHHHH---------------HHHHHHHHHHSSCEE---EEC--C
T ss_pred HHHHHHHHHHHHcCCCH-----HHH----hcCCC-CHHHHH---------------HHHHHHHHHhcCCEE---EEC--C
Confidence 33222110 00011110 000 00000 001111 122233333322211 111 2
Q ss_pred CCCCHHHHHHHHHHHHHH--cCCcEeEEeCCCCCCCH--------HHHHHHHHHHHHHHHhCCcEEEEEEc---------
Q 003389 341 RGISGGQKKRVTTGEMLV--GTANVLYMDEISTGLDS--------STTFQICKFLKQMVHILDVTMIVALL--------- 401 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv--~~p~iLlLDEPTsGLDs--------~t~~~I~~~L~~l~~~~~~tvIisi~--------- 401 (824)
.++|.+|.+ +.++.++ .+|+++++|+++...++ ....++.+.|+.++++.+++||++.|
T Consensus 294 ~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~ 371 (454)
T 2r6a_A 294 PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQ 371 (454)
T ss_dssp TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC-
T ss_pred CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCC
Confidence 358999987 5666666 68999999999997743 34467888899999888888888765
Q ss_pred c--Cc-------hhHHhhcCeEEEEcCCeE
Q 003389 402 Q--PA-------PETYDLFDDIILLSEGQI 422 (824)
Q Consensus 402 q--~~-------~e~~~lfD~iilL~~G~i 422 (824)
. |. ..+...+|.|++|..++.
T Consensus 372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 372 DKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 1 32 146778999999987653
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.75 E-value=8e-10 Score=130.50 Aligned_cols=172 Identities=19% Similarity=0.203 Sum_probs=102.2
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
+...+++++++.+++|+.++|+||||+|||||+++|+|.+.+. .-|.+.+++.+.+.. ...++++++. +
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~--~p~i~~~p~g-------~ 113 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDEN--MPRIKTVPAC-------Q 113 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTT--SCEEEEEETT-------H
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCccccc--CCcEEEEecc-------h
Confidence 3456899999999999999999999999999999999998775 248899988877654 3458898875 2
Q ss_pred HHHHHHHh---hhhcCCchhhHHHHHhHHHHHh-c-------CCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcc
Q 003389 262 VRETLDFS---GRCLGVGTRYELLAELSRREKQ-A-------GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC 330 (824)
Q Consensus 262 V~E~L~f~---a~~~~~~~~~~~~~~~~~~e~~-~-------~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~ 330 (824)
.++.+.-. +.... ..+ +. ......... . ...+.+-+ ..... ..-+.+|.-..
T Consensus 114 ~~~~~e~~~~~~~~~~-~~r-~~-~~~~~~~~~~~nl~v~~~~~~~~~~v-----------~~~~~---~~~~L~G~~~~ 176 (604)
T 3k1j_A 114 GRRIVEKYREKAKSQE-SVK-SS-NMRLKSTVLVPKLLVDNCGRTKAPFI-----------DATGA---HAGALLGDVRH 176 (604)
T ss_dssp HHHHHHHHHHHHHHHT-CC-------------CCCEEEECCTTCSSCCEE-----------ECTTC---CHHHHHCEECC
T ss_pred HHHHHHHHHHhhccch-hhh-hh-cccccccccccceeeccccCCCCCEE-----------EcCCC---CHHhcCceEEe
Confidence 22211110 00000 000 00 000000000 0 00000000 00000 01122332111
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 003389 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQ 387 (824)
Q Consensus 331 ~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~ 387 (824)
... ...++|+|++|++..+.....++.+||+||+.. |++.....+.+.|.+
T Consensus 177 ~~~-----~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 177 DPF-----QSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCC---------CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred chh-----hcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 111 124699999999999999999999999999998 899888888877764
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=3.4e-08 Score=106.30 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=83.4
Q ss_pred cceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHH
Q 003389 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLD 267 (824)
Q Consensus 188 ~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~ 267 (824)
+++++. +|++++++|+||+||||++..|+|.+.+. .|+|.+.+.+..... ++ +.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~~------------------~~-~ql~ 146 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRPA------------------AR-EQLR 146 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCHH------------------HH-HHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccHh------------------HH-HHHH
Confidence 678888 99999999999999999999999998765 788888776542100 00 0000
Q ss_pred HhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHH
Q 003389 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (824)
Q Consensus 268 f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGq 347 (824)
.+.+..|++.... + .+-...+
T Consensus 147 ----------------------------------------------------~~~~~~~l~~~~~---~----~~~~p~~ 167 (295)
T 1ls1_A 147 ----------------------------------------------------LLGEKVGVPVLEV---M----DGESPES 167 (295)
T ss_dssp ----------------------------------------------------HHHHHHTCCEEEC---C----TTCCHHH
T ss_pred ----------------------------------------------------HhcccCCeEEEEc---C----CCCCHHH
Confidence 0112334432210 0 0123446
Q ss_pred HHHHHHHHHHHcCCcEeEEeCC-CCCCCHHHHHHHHHHHHHH
Q 003389 348 KKRVTTGEMLVGTANVLYMDEI-STGLDSSTTFQICKFLKQM 388 (824)
Q Consensus 348 rqRvsIA~aLv~~p~iLlLDEP-TsGLDs~t~~~I~~~L~~l 388 (824)
.+|.+++++...+++++++||| +.|+|.....++.+..+.+
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 6788999998899999999999 9999998888887776665
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.8e-08 Score=107.12 Aligned_cols=143 Identities=15% Similarity=0.214 Sum_probs=85.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhhcC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG 274 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~ 274 (824)
++|++++|+|||||||||++..|++.+.+. +| +.+.++.++.. ..+..|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~--- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAE--- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHH---
Confidence 579999999999999999999999998753 45 23566666532 2345555543211
Q ss_pred CchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 003389 275 VGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTG 354 (824)
Q Consensus 275 ~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA 354 (824)
..|++.. + ..+. +.-+.+++
T Consensus 159 -------------------------------------------------~~gl~~~----~------~~~~-~~l~~al~ 178 (296)
T 2px0_A 159 -------------------------------------------------LLQAPLE----V------CYTK-EEFQQAKE 178 (296)
T ss_dssp -------------------------------------------------TTTCCCC----B------CSSH-HHHHHHHH
T ss_pred -------------------------------------------------hcCCCeE----e------cCCH-HHHHHHHH
Confidence 1233211 0 0122 33355555
Q ss_pred HHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH--hCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEe
Q 003389 355 EMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH--ILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425 (824)
Q Consensus 355 ~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~--~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~ 425 (824)
+ +.+|+++|+| |+|+|+.....+.+..+-+.. ..+.++|+...+...++.+.+|++..+..|.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 999998766544443332211 11223444224444567777777766666777753
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.70 E-value=9.9e-10 Score=110.50 Aligned_cols=71 Identities=21% Similarity=0.242 Sum_probs=49.7
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCCCHHHHHH
Q 003389 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEMTVRETLD 267 (824)
Q Consensus 191 s~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~lTV~E~L~ 267 (824)
|+.+++|++++|+||||||||||+++|+|+++ .+.++|....... ..+.++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999863 3566665543321 1345789999876666666666554
Q ss_pred H
Q 003389 268 F 268 (824)
Q Consensus 268 f 268 (824)
+
T Consensus 74 ~ 74 (205)
T 3tr0_A 74 E 74 (205)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.62 E-value=4.1e-08 Score=108.20 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcC--CcEeEEeCCCCCC----------CH---HHHHHHHHHHHHH---HHhCCcEEEEEEccCch-----
Q 003389 349 KRVTTGEMLVGT--ANVLYMDEISTGL----------DS---STTFQICKFLKQM---VHILDVTMIVALLQPAP----- 405 (824)
Q Consensus 349 qRvsIA~aLv~~--p~iLlLDEPTsGL----------Ds---~t~~~I~~~L~~l---~~~~~~tvIisi~q~~~----- 405 (824)
+-+.++++++.. |+++++||+++.+ |+ ..+..+.+.++++ +++.++|+|++.|-...
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345677878754 9999999999998 33 2222344444444 45668888887553221
Q ss_pred ----------hHHhhcCeEEEEcCCeEEEecC
Q 003389 406 ----------ETYDLFDDIILLSEGQIVYQGP 427 (824)
Q Consensus 406 ----------e~~~lfD~iilL~~G~iv~~G~ 427 (824)
.+...||.++.+..++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1456799999998887766554
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=5.5e-09 Score=120.21 Aligned_cols=165 Identities=12% Similarity=0.095 Sum_probs=93.4
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhc--CcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCC--CHHH
Q 003389 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAG--KLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM--TVRE 264 (824)
Q Consensus 189 ~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG--~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l--TV~E 264 (824)
.+++.+.++..++|.|++||||||+|++|.. +.... .|++.+.+.+.+..... ....+|++ +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~el~--------~~~~lPhl~~~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKMLELS--------VYEGIPHLLTEVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSSGGG--------GGTTCTTBSSSCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchhhhh--------hhccCCcccceeec
Confidence 4778888999999999999999999999875 33333 57777666554321110 00011111 2222
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc--cccCccCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT--MVGDEMRRG 342 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt--~vg~~~~rg 342 (824)
+...+..... ....++.+ + ..+++..|+.+..+. .+. ..
T Consensus 228 d~~~a~~~L~-----~~~~Emer-----------------------------R-~~ll~~~Gv~~i~~yn~~~~----~~ 268 (512)
T 2ius_A 228 DMKDAANALR-----WCVNEMER-----------------------------R-YKLMSALGVRNLAGYNEKIA----EA 268 (512)
T ss_dssp SHHHHHHHHH-----HHHHHHHH-----------------------------H-HHHHHHTTCSSHHHHHHHHH----HH
T ss_pred CHHHHHHHHH-----HHHHHHHH-----------------------------H-HHHHHHcCCccHHHHHHHHH----HH
Confidence 2222211000 00111111 1 135566666543321 121 13
Q ss_pred CCHHHHHHH----------HHHHHHHcCCc-EeEEeCCCCCCCHHHHHHHHHHHHHHH---HhCCcEEEEEEccCc
Q 003389 343 ISGGQKKRV----------TTGEMLVGTAN-VLYMDEISTGLDSSTTFQICKFLKQMV---HILDVTMIVALLQPA 404 (824)
Q Consensus 343 LSGGqrqRv----------sIA~aLv~~p~-iLlLDEPTsGLDs~t~~~I~~~L~~l~---~~~~~tvIisi~q~~ 404 (824)
+||||+||. .+++++...|. ++++||++.-+|.. ...+.+.|.+++ +..|.++|++.+.|.
T Consensus 269 ~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 269 DRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 788887752 34556677887 89999999988843 344555555554 445789999888876
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.54 E-value=9.4e-11 Score=124.67 Aligned_cols=77 Identities=25% Similarity=0.362 Sum_probs=56.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCC-CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL-HHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~-~~~~ 259 (824)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++..... .+.+++++|... ..+.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 45899999999999 99999999999999999999864 6889999876533211 123455666532 3455
Q ss_pred CCHHHHHH
Q 003389 260 MTVRETLD 267 (824)
Q Consensus 260 lTV~E~L~ 267 (824)
+++.|++.
T Consensus 135 i~~iDeid 142 (278)
T 1iy2_A 135 IVFIDEID 142 (278)
T ss_dssp EEEEETHH
T ss_pred EEehhhhH
Confidence 56666664
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.54 E-value=9.5e-09 Score=102.65 Aligned_cols=38 Identities=8% Similarity=0.157 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHH
Q 003389 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQM 388 (824)
Q Consensus 349 qRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l 388 (824)
+.+.+|++++.+|+++++| ||++|.....++.+.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999 9999999999999888763
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.6e-08 Score=102.75 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=23.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHh-cCcCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALA-GKLGK 223 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~La-G~l~~ 223 (824)
.+..+++|+++++|++++|+||||||||||+++|+ |++++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 45789999999999999999999999999999999 98743
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-10 Score=121.36 Aligned_cols=77 Identities=25% Similarity=0.361 Sum_probs=55.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCC-CCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD-LHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d-~~~~~ 259 (824)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++..... .+.+++++|.. ...+.
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 45899999999999 99999999999999999999864 6889998876532211 12345555542 23455
Q ss_pred CCHHHHHH
Q 003389 260 MTVRETLD 267 (824)
Q Consensus 260 lTV~E~L~ 267 (824)
+++.|++.
T Consensus 111 i~~~Deid 118 (254)
T 1ixz_A 111 IVFIDEID 118 (254)
T ss_dssp EEEEETHH
T ss_pred EEEehhhh
Confidence 56666663
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.47 E-value=7.9e-08 Score=105.99 Aligned_cols=41 Identities=27% Similarity=0.281 Sum_probs=33.1
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceE-eeCC
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI-TYCG 235 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I-~~nG 235 (824)
+=+++|+++.|.||||||||||+..+++...+. .|.| ++++
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~ 97 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDA 97 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEES
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEec
Confidence 479999999999999999999999999876543 4554 3343
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.46 E-value=7e-09 Score=107.51 Aligned_cols=59 Identities=22% Similarity=0.157 Sum_probs=40.7
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-----------CCceEEEEecC
Q 003389 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-----------PQRTCAYISQH 253 (824)
Q Consensus 191 s~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-----------~~~~i~yv~Q~ 253 (824)
++.+.+ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455566 899999999999999999999999987 999999998773211 13568899884
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.4e-08 Score=100.77 Aligned_cols=71 Identities=14% Similarity=0.061 Sum_probs=48.6
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCCCHHHHHHH
Q 003389 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMTVRETLDF 268 (824)
Q Consensus 191 s~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~lTV~E~L~f 268 (824)
.+..++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .+...++++|+....+.+++.+++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 3566799999999999999999999999875 77899987764211 11235777876555555566665544
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.28 E-value=6.5e-07 Score=88.32 Aligned_cols=65 Identities=20% Similarity=0.136 Sum_probs=45.6
Q ss_pred cc--cceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCC---------cccCCCCCCceEEEEecCC
Q 003389 186 IL--KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG---------HELNEFVPQRTCAYISQHD 254 (824)
Q Consensus 186 IL--~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG---------~~~~~~~~~~~i~yv~Q~d 254 (824)
.+ +++++.+.+| +++|+||||||||||+++|.+.+.+. .|.....+ ...........+..++|++
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL---SAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC---CTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC---cccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 55 7899999999 99999999999999999999988764 44332222 1111101234688888874
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.8e-06 Score=98.71 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCC----------CCCCCHHHHHHHHHHHHHHH---HhCCcEEEEEEccC
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEI----------STGLDSSTTFQICKFLKQMV---HILDVTMIVALLQP 403 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEP----------TsGLDs~t~~~I~~~L~~l~---~~~~~tvIisi~q~ 403 (824)
|++++|..++++....|.+||+||+ +.|.|......+.++|..+- ...+..+|.+.+.|
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 5678888899999999999999999 34677766666666666653 22355666666655
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.2e-06 Score=93.85 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=86.5
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
.+..-|+.+.+-+.+|+++.|.|+||+|||||+.-++..... . ...+.|++- +++
T Consensus 31 TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~---------g~~Vl~fSl------Ems 85 (338)
T 4a1f_A 31 TGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------D---------DRGVAVFSL------EMS 85 (338)
T ss_dssp CSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------T---------TCEEEEEES------SSC
T ss_pred CCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------c---------CCeEEEEeC------CCC
Confidence 345678888888999999999999999999999988864321 1 123555553 345
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
..+...=. .. ....+.+.... -|
T Consensus 86 ~~ql~~Rl------------ls-------------------------------------~~~~v~~~~l~---~g----- 108 (338)
T 4a1f_A 86 AEQLALRA------------LS-------------------------------------DLTSINMHDLE---SG----- 108 (338)
T ss_dssp HHHHHHHH------------HH-------------------------------------HHHCCCHHHHH---HT-----
T ss_pred HHHHHHHH------------HH-------------------------------------HhhCCCHHHHh---cC-----
Confidence 44422100 00 00000111100 12
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CcEEEEE
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL-DVTMIVA 399 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~-~~tvIis 399 (824)
.||+++.+|++.|...+.++++++.|+|+.. ..+|...++++.+.. +..+|++
T Consensus 109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEE
Confidence 3999999999999999999999999998654 336777777777666 6666664
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=4.2e-07 Score=90.92 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHH
Q 003389 351 VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV 389 (824)
Q Consensus 351 vsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~ 389 (824)
...|++++.+|+++++| ||++|.....++.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45688999999999999 99999999999998887654
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.16 E-value=7e-07 Score=89.54 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=28.0
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD 224 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~ 224 (824)
++|++|++++|+||||||||||+++|++++.|+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 367899999999999999999999999998553
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.14 E-value=7.9e-07 Score=98.47 Aligned_cols=155 Identities=16% Similarity=0.058 Sum_probs=85.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCC--------CCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH---HHHH
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLGKD--------LRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR---ETLD 267 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~~~--------~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~---E~L~ 267 (824)
.++|+|+||||||||+|.|+|..... ...+|.|.++|.++. .-.+.|++.+.+ ...|. .++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp----~~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIP----PQIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCC----GGGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCC----HHHHHHHHHHHH
Confidence 49999999999999999999986421 024689999886542 123445554422 11221 1221
Q ss_pred HhhhhcCCchhhHHHHHhHHHHHhcCCCCChh--HHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCH
Q 003389 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPE--IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (824)
Q Consensus 268 f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSG 345 (824)
........-.-.+ + .++. .+. ....+..+|+.+++.+..--.|++. ..-+|+
T Consensus 254 ~~~~aD~il~VvD-------------~-s~~~~~~~~-----------~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~ 307 (364)
T 2qtf_A 254 EAKYSDALILVID-------------S-TFSENLLIE-----------TLQSSFEILREIGVSGKPILVTLNK-IDKING 307 (364)
T ss_dssp GGGGSSEEEEEEE-------------T-TSCHHHHHH-----------HHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCS
T ss_pred HHHhCCEEEEEEE-------------C-CCCcchHHH-----------HHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCc
Confidence 1100000000000 0 0000 110 0112345677777765443333432 223788
Q ss_pred HHHHHHHHH----HHH-HcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 003389 346 GQKKRVTTG----EML-VGTANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (824)
Q Consensus 346 GqrqRvsIA----~aL-v~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~ 390 (824)
|+++|+.++ +.+ ..+|++ +|+|++|......+.+.|.+...
T Consensus 308 ~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 308 DLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp CHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 888988887 444 333344 89999999999999999988764
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.13 E-value=4.6e-07 Score=98.59 Aligned_cols=81 Identities=12% Similarity=0.064 Sum_probs=61.5
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---------C---CceEEEE-ec
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---------P---QRTCAYI-SQ 252 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---------~---~~~i~yv-~Q 252 (824)
+++++++.+++|++++|+||||+||||++..|++.+.+. .|+|.+.+.+..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998765 799999887653211 1 3458888 77
Q ss_pred CCCCCCCCCHHHHHHHh
Q 003389 253 HDLHHGEMTVRETLDFS 269 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~ 269 (824)
.....|..++.+++...
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 65555555667766543
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.1e-07 Score=96.57 Aligned_cols=52 Identities=37% Similarity=0.406 Sum_probs=36.8
Q ss_pred hhhccc-ccCcccccccccceeeEEeC---CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 171 LGLLHL-VPSKKRSVRILKDVSGIVKP---SRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 171 l~~~~~-~~~~~~~~~IL~~vs~~I~~---Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+.+.++ .+.+.+..++|+|+|+.|++ |+.++|+|+|||||||+.++|++.+.
T Consensus 18 l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 18 LETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp --------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 344444 44442456799999999999 99999999999999999999998764
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=3e-07 Score=92.57 Aligned_cols=53 Identities=26% Similarity=0.323 Sum_probs=45.0
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceE--eeCCcccC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI--TYCGHELN 239 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I--~~nG~~~~ 239 (824)
..+..+.++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++.
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNVR 65 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHHT
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchhh
Confidence 3456677888889999999999999999999999999986 3 6887 88887664
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.05 E-value=7e-07 Score=93.60 Aligned_cols=62 Identities=24% Similarity=0.118 Sum_probs=46.9
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHh---cCcCCCCCCcceEe--------eCCcccCCCC----CCceEEEE
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALA---GKLGKDLRASGKIT--------YCGHELNEFV----PQRTCAYI 250 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~La---G~l~~~~~~sG~I~--------~nG~~~~~~~----~~~~i~yv 250 (824)
++++.+ ++|++++|+|||||||||++++|+ |+..++ +|.|. .+|.++.... ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 445444 789999999999999999999999 887776 99999 8998774321 12557888
Q ss_pred ecC
Q 003389 251 SQH 253 (824)
Q Consensus 251 ~Q~ 253 (824)
+|.
T Consensus 93 ~~~ 95 (252)
T 4e22_A 93 FVS 95 (252)
T ss_dssp EEE
T ss_pred Eec
Confidence 875
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.8e-06 Score=86.80 Aligned_cols=39 Identities=33% Similarity=0.170 Sum_probs=25.1
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
...+++|||+.+++|++++|+|||||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 346899999999999999999999999999999999876
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=3e-06 Score=83.90 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=31.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG 235 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG 235 (824)
.+|++++|+||||||||||+++|++.+++. ..|.|.+..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~tt 41 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHTT 41 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeeccC
Confidence 368999999999999999999999987532 356665543
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.2e-07 Score=109.20 Aligned_cols=76 Identities=24% Similarity=0.346 Sum_probs=53.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCC-CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL-HHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~-~~~~ 259 (824)
..+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++.+... .+.+..++|... ..+.
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~ 125 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 125 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSC
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCC
Confidence 35789999999999 99999999999999999999864 6788999877643211 122344555432 2344
Q ss_pred CCHHHHH
Q 003389 260 MTVRETL 266 (824)
Q Consensus 260 lTV~E~L 266 (824)
+.+.|++
T Consensus 126 il~IDEI 132 (499)
T 2dhr_A 126 IVFIDEI 132 (499)
T ss_dssp EEEEECG
T ss_pred EEEEehH
Confidence 4444444
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.2e-05 Score=97.36 Aligned_cols=72 Identities=14% Similarity=0.103 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEIST-GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTs-GLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.+... ...+++++..++...+.+++++.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSC
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCC
Confidence 489999999999999999999999999996 9998887777777765543 34677776555666777777753
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=3.5e-06 Score=86.89 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=36.2
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccC
Q 003389 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239 (824)
Q Consensus 191 s~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~ 239 (824)
++..++|++++|.|+||||||||+++|+|. .|+|.++|.+..
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~~ 55 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPVE 55 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCHH
Confidence 445579999999999999999999999987 588999887653
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.83 E-value=5.2e-05 Score=82.07 Aligned_cols=131 Identities=13% Similarity=0.103 Sum_probs=84.8
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
.+..-|+++.+-+++|+++.|.|+||+|||||+..++..... .| ..+.|++-+ ++
T Consensus 53 TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----~g---------------~~vl~~slE------~s 107 (315)
T 3bh0_A 53 SGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----ND---------------DVVNLHSLE------MG 107 (315)
T ss_dssp CSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----TT---------------CEEEEEESS------SC
T ss_pred CChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cC---------------CeEEEEECC------CC
Confidence 345678888888999999999999999999999988753211 11 235666533 45
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC--ccccccccCcc
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD--ICADTMVGDEM 339 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~--~~~dt~vg~~~ 339 (824)
..+...=... ...|++ +..+ |.
T Consensus 108 ~~~l~~R~~~---------------------------------------------------~~~~i~~~~l~~---~~-- 131 (315)
T 3bh0_A 108 KKENIKRLIV---------------------------------------------------TAGSINAQKIKA---AR-- 131 (315)
T ss_dssp HHHHHHHHHH---------------------------------------------------HHTTCCHHHHHS---CH--
T ss_pred HHHHHHHHHH---------------------------------------------------HHcCCCHHHHhc---CC--
Confidence 4443211000 000111 0000 00
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE--EEEE
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVT--MIVA 399 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~t--vIis 399 (824)
..||+++++|+..|...+.++++++.|+|... ..+|...++++.+..+.. +|++
T Consensus 132 -~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVI 187 (315)
T 3bh0_A 132 -RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMI 187 (315)
T ss_dssp -HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred -CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEE
Confidence 12899999999999888888999999998643 445677777776655656 6664
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.79 E-value=4.5e-06 Score=92.71 Aligned_cols=44 Identities=34% Similarity=0.316 Sum_probs=39.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEee
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY 233 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~ 233 (824)
..+|+++|+.+++|++++|+||||||||||+++|+|.+ +|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999864 577665
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.76 E-value=5.6e-05 Score=83.17 Aligned_cols=56 Identities=11% Similarity=0.188 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEe-CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMD-EISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLD-EPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi 400 (824)
.+|+||+|++. +.+...++-++++| ++..|+|......+++.+++... +..++++.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 48999998876 55556777889999 99999999998888888877643 55666655
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.72 E-value=7.7e-06 Score=82.42 Aligned_cols=42 Identities=19% Similarity=0.097 Sum_probs=35.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCccc
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~ 238 (824)
.++|++++|+|+||||||||+++|++.+.+. .|+|.+.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d~ 60 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMDD 60 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccCc
Confidence 5689999999999999999999999998764 77887766553
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=1.2e-05 Score=78.54 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=31.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCccc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~ 238 (824)
.+|++++|+||||||||||+++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCccc
Confidence 468999999999999999999999874 6677776554
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00018 Score=76.38 Aligned_cols=27 Identities=48% Similarity=0.760 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++.-++|.||||+|||||+++|++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999754
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=3.3e-05 Score=87.61 Aligned_cols=96 Identities=13% Similarity=0.231 Sum_probs=61.4
Q ss_pred cCCcEeEEeCCCCCCCH-HHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE-EcCCeEEEecChh--hHHH-
Q 003389 359 GTANVLYMDEISTGLDS-STTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL-LSEGQIVYQGPRD--NVLE- 433 (824)
Q Consensus 359 ~~p~iLlLDEPTsGLDs-~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil-L~~G~iv~~G~~~--~~~~- 433 (824)
.+|++||+||+..-.+. .+...+.+.+..+.. .+..+|++.+.+..++..+.+++.- +..|.++..++++ +..+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSI 271 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHH
Confidence 37899999999887664 677788888888764 4778888877765543333333332 4567777766653 2222
Q ss_pred ---HHHHcCCCCCCCCCHHHHHHHhhc
Q 003389 434 ---FFEHMGFKCPERKGVADFLQEVTS 457 (824)
Q Consensus 434 ---~f~~~G~~~p~~~~~adfl~~v~s 457 (824)
..+..|...|+ ...+++.+.+.
T Consensus 272 L~~~~~~~~~~i~~--e~l~~la~~~~ 296 (440)
T 2z4s_A 272 ARKMLEIEHGELPE--EVLNFVAENVD 296 (440)
T ss_dssp HHHHHHHHTCCCCT--THHHHHHHHCC
T ss_pred HHHHHHHcCCCCCH--HHHHHHHHhcC
Confidence 33445665554 45677766543
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.69 E-value=1.9e-05 Score=80.09 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=27.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999865
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00014 Score=80.08 Aligned_cols=47 Identities=21% Similarity=0.322 Sum_probs=34.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC--cCCCCCCcceEeeCCc
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK--LGKDLRASGKITYCGH 236 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~--l~~~~~~sG~I~~nG~ 236 (824)
..+|+++++.++ .++|+|++|||||||+++|+|. ++.+ +|.++-.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~---~~~vT~~p~ 72 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRG---SGIVTRRPL 72 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCC---SSSCCCSCE
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCC---CCcccCcce
Confidence 458999999998 8999999999999999999994 4444 666654443
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00016 Score=79.26 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=29.8
Q ss_pred ccccee-eEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 186 ILKDVS-GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 186 IL~~vs-~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455443 67999999999999999999999998874
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.66 E-value=2e-05 Score=79.66 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=26.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.+|++++|+||||||||||++.|++.++
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999999998865
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=7.6e-06 Score=97.55 Aligned_cols=48 Identities=31% Similarity=0.331 Sum_probs=35.7
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC
Q 003389 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE 240 (824)
Q Consensus 191 s~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~ 240 (824)
|+.+++|+.++|+|++|+|||||++.|++...+ ....|+| .+|..+..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~-~~~~G~V-~~g~~~~d 50 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGA-KERRGRV-EEGTTTTD 50 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTS-SSSCCCG-GGTCCSSC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCC-CCcccee-cCCccccc
Confidence 356788999999999999999999999987554 1237887 66665543
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.64 E-value=6.8e-06 Score=89.35 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=32.8
Q ss_pred cccccceeeEEeCCe------EEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 184 VRILKDVSGIVKPSR------MTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge------~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
.+.|++++..+..++ +++|+||||||||||+++|++++..
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 446666666666655 9999999999999999999999864
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=2.8e-05 Score=78.22 Aligned_cols=30 Identities=27% Similarity=0.203 Sum_probs=27.0
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-.+++|++++|+|+||||||||++.|++.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999999999999999875
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00022 Score=77.42 Aligned_cols=36 Identities=31% Similarity=0.418 Sum_probs=30.2
Q ss_pred cccccee-eEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 185 RILKDVS-GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 185 ~IL~~vs-~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
..|+.+= +-+++|+++.|.||||+|||||+..++..
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 3455543 67999999999999999999999998864
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.56 E-value=1.4e-05 Score=93.04 Aligned_cols=44 Identities=32% Similarity=0.364 Sum_probs=37.8
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcc-eEe-eCCccc
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG-KIT-YCGHEL 238 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG-~I~-~nG~~~ 238 (824)
..+++|++++|+|+||||||||+++|+|++.+. +| +|. ++|.++
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDIV 409 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcHH
Confidence 357899999999999999999999999999875 65 785 888654
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00047 Score=75.40 Aligned_cols=44 Identities=5% Similarity=0.058 Sum_probs=31.6
Q ss_pred cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHh--CCcEEEEEEccC
Q 003389 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHI--LDVTMIVALLQP 403 (824)
Q Consensus 359 ~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~--~~~tvIisi~q~ 403 (824)
.+|.+|++||+... |......+.+.+.+.... .+.++|++.+.+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 888888887777665431 356677666654
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.47 E-value=4e-05 Score=74.44 Aligned_cols=27 Identities=44% Similarity=0.643 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999864
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00011 Score=78.85 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHH--cCCcEeEEeCCCCCCCHHH-HHHHHHHHHHHHHhCC
Q 003389 343 ISGGQKKRVTTGEMLV--GTANVLYMDEISTGLDSST-TFQICKFLKQMVHILD 393 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv--~~p~iLlLDEPTsGLDs~t-~~~I~~~L~~l~~~~~ 393 (824)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++..+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~ 147 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMN 147 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSC
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcC
Confidence 888886 5667776 78999999 7899876 6677788888876444
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00053 Score=71.25 Aligned_cols=35 Identities=37% Similarity=0.700 Sum_probs=25.5
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.++++++.+++| ++|.||||+|||||+++|++.+.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 456666666555 89999999999999999998764
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.41 E-value=2e-05 Score=86.23 Aligned_cols=51 Identities=22% Similarity=0.286 Sum_probs=43.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcc
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~ 237 (824)
..+++++++.+++|.+++|+|+||+|||||++.|+|.+.+. .|+|.+-+.+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~~d 93 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIAVD 93 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEEC
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEeec
Confidence 45889999999999999999999999999999999988654 5666655443
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00081 Score=76.14 Aligned_cols=39 Identities=23% Similarity=0.494 Sum_probs=33.6
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+..-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 186 G~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 186 GFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp SCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345678888889999999999999999999999888654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00056 Score=77.15 Aligned_cols=37 Identities=30% Similarity=0.260 Sum_probs=30.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG 235 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG 235 (824)
++.+++++|||||||||++..|++.+.+. .++|.+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 68999999999999999999999988653 45555533
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00019 Score=76.96 Aligned_cols=30 Identities=43% Similarity=0.620 Sum_probs=26.6
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.++++..++|.||||+|||||+++|++.+
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788999999999999999999999865
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00013 Score=70.26 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=24.8
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 189 ~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
+.++.+.+| +++|+|||||||||+|++|.-.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 444555554 9999999999999999999743
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.26 E-value=7.8e-05 Score=81.91 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=35.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~ 239 (824)
+++..++|+|+||||||||+|.|+|.+.+. .|+|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeecCC
Confidence 467899999999999999999999988765 788877766543
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=3.9e-05 Score=78.03 Aligned_cols=57 Identities=26% Similarity=0.190 Sum_probs=39.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEee--------CCcccCCC----CCCceEEEEecC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY--------CGHELNEF----VPQRTCAYISQH 253 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~--------nG~~~~~~----~~~~~i~yv~Q~ 253 (824)
+.+++|+|||||||||+.++|++.+......+|+|.. +|.++... ...+.+++++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 5689999999999999999999876321123788877 66655320 012446677765
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=7.1e-05 Score=73.48 Aligned_cols=40 Identities=35% Similarity=0.362 Sum_probs=31.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcc--eEeeCCccc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG--KITYCGHEL 238 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG--~I~~nG~~~ 238 (824)
++|++++|+|++||||||++++|++.+.+ .| .|.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChHH
Confidence 47999999999999999999999998754 34 556666544
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0054 Score=67.42 Aligned_cols=36 Identities=31% Similarity=0.395 Sum_probs=28.9
Q ss_pred ccccee--eEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 186 ILKDVS--GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 186 IL~~vs--~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-|+.+- +=+++|+++.|.||||+|||||...++...
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344432 468999999999999999999998887543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.18 E-value=8.8e-05 Score=86.34 Aligned_cols=48 Identities=29% Similarity=0.499 Sum_probs=40.9
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCc
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~ 236 (824)
.+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|+|.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEeccc
Confidence 4677788877 89999999999999999999999998765 788877763
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00019 Score=78.20 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=25.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
++++.++|.||+|+|||||++.+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999987643
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00018 Score=74.23 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=27.6
Q ss_pred cccceeeEEe---CCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 186 ILKDVSGIVK---PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 186 IL~~vs~~I~---~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
-|.++|+.+. +|.+++|.||+||||||+++.|+..+.+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3677777776 9999999999999999999999998753
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00016 Score=72.11 Aligned_cols=36 Identities=31% Similarity=0.379 Sum_probs=31.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
..+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 458899999888885 689999999999999999874
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00026 Score=72.83 Aligned_cols=66 Identities=12% Similarity=0.063 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEIST-GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTs-GLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.+... .-.+++++-.-+.+...++|+
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcC
Confidence 445555542 23578889999999965 7887776555555554432 234566665555444444444
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00013 Score=73.67 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=35.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcc--eEeeCCccc
Q 003389 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG--KITYCGHEL 238 (824)
Q Consensus 193 ~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG--~I~~nG~~~ 238 (824)
.+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|..+
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDNI 65 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChHH
Confidence 35689999999999999999999999988753 56 677776543
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00057 Score=77.27 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=32.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCC------C---CCCcceEeeCCccc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLGK------D---LRASGKITYCGHEL 238 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~~------~---~~~sG~I~~nG~~~ 238 (824)
-.++|+|+||+|||||++.|+|.... . ....|.+.++|+++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 47999999999999999999998531 0 02479999999865
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00053 Score=66.68 Aligned_cols=27 Identities=37% Similarity=0.589 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0035 Score=67.50 Aligned_cols=34 Identities=29% Similarity=0.318 Sum_probs=28.7
Q ss_pred ccccee-eEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 003389 186 ILKDVS-GIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 186 IL~~vs-~~I~~Ge~~aLlGpnGSGKSTLL~~LaG 219 (824)
-|+.+- +-+++|+++.|.||||+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444443 6799999999999999999999998875
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.002 Score=68.48 Aligned_cols=28 Identities=46% Similarity=0.625 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
|...++|.||||+|||||.++|++.+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 4468999999999999999999998754
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00059 Score=73.45 Aligned_cols=46 Identities=13% Similarity=0.263 Sum_probs=32.5
Q ss_pred cCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCch
Q 003389 359 GTANVLYMDEIST-GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP 405 (824)
Q Consensus 359 ~~p~iLlLDEPTs-GLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~ 405 (824)
.++.+||+||+-. ..+..+...+...+..+.. .+..+|++...+..
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQ 143 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGG
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecCChH
Confidence 4689999999866 2344777888888887765 35667776665543
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00046 Score=68.17 Aligned_cols=35 Identities=34% Similarity=0.386 Sum_probs=21.0
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998887 5689999999999999999974
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0003 Score=77.74 Aligned_cols=50 Identities=26% Similarity=0.405 Sum_probs=42.5
Q ss_pred hhcccccCccccccccc--------------ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 172 GLLHLVPSKKRSVRILK--------------DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 172 ~~~~~~~~~~~~~~IL~--------------~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
...++.+.+...+.+|+ |+++.|.+|+.++|+||+|+|||||++.|++..
T Consensus 135 ~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 135 LFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34455556666677888 899999999999999999999999999999865
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0018 Score=67.97 Aligned_cols=28 Identities=46% Similarity=0.780 Sum_probs=24.4
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.++.-++|.||+|+|||||+++|+..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4566779999999999999999999764
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0091 Score=67.60 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=32.6
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
+..-|+.+.+=+.+|+++.|.|+||+|||||+.-++..
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 44568888778999999999999999999998888753
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00048 Score=68.08 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=26.4
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 189 ~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999865
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00044 Score=68.15 Aligned_cols=29 Identities=41% Similarity=0.546 Sum_probs=26.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
++|.++.|+|++||||||+.+.|++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999998764
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00044 Score=69.43 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=25.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45889999999999999999999998763
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00065 Score=68.62 Aligned_cols=32 Identities=31% Similarity=0.465 Sum_probs=24.9
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 189 ~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.++.+.+ .+++|+|||||||||++++|.-.+
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34445555 499999999999999999986433
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00046 Score=77.70 Aligned_cols=46 Identities=20% Similarity=0.121 Sum_probs=39.9
Q ss_pred cceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCccc
Q 003389 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238 (824)
Q Consensus 188 ~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~ 238 (824)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeeccc
Confidence 678887 89999999999999999999999999775 78888876654
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00016 Score=79.72 Aligned_cols=44 Identities=20% Similarity=0.154 Sum_probs=29.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG 235 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG 235 (824)
.+.+++++++.| +|+|++|+|||||++.|.|..... .|.+..++
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~---~~~~~~~~ 72 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERVIPGAA 72 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-------------
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC---CCcccCCC
Confidence 355788999887 999999999999999998864432 44444444
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0023 Score=65.87 Aligned_cols=53 Identities=23% Similarity=0.437 Sum_probs=41.6
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEc---------cCchhHHhhcCeEEEEc
Q 003389 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL---------QPAPETYDLFDDIILLS 418 (824)
Q Consensus 360 ~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~---------q~~~e~~~lfD~iilL~ 418 (824)
+++++++||.-. |+. ++++.++.+++ .+..+|++=+ .+++++..++|+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 579999999964 654 35566677776 4889999877 56788899999999986
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00058 Score=67.53 Aligned_cols=40 Identities=28% Similarity=0.261 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~ 237 (824)
.+++|+|+||||||||++.|.+.+.+....-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5889999999999999999998765432234777776654
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00024 Score=77.98 Aligned_cols=38 Identities=24% Similarity=0.476 Sum_probs=34.1
Q ss_pred ccccceeeEEeCCeE--EEEEcCCCCcHHHHHHHHhcCcC
Q 003389 185 RILKDVSGIVKPSRM--TLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~--~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 478888888889988 99999999999999999999764
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00082 Score=67.27 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh--HHhhcCeEEEEc
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE--TYDLFDDIILLS 418 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e--~~~lfD~iilL~ 418 (824)
+.|+.+|..+++.+..+|..+.++ ++.+++.....+.+.+++. .+.++|+..+ ...+ ....||.+++|+
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~-~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVP-LLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECT-TTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEec-hhhhcCcHhhCCEEEEEE
Confidence 578888888888888877654333 2345555555554444332 2446665543 2223 256788888874
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00014 Score=79.13 Aligned_cols=41 Identities=32% Similarity=0.602 Sum_probs=36.4
Q ss_pred ccccccceeeEEeCCeE--EEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 183 SVRILKDVSGIVKPSRM--TLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~--~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
...+++.++..++.|++ +++.||||+||||+++++++.+.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34588888889999998 999999999999999999998754
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0068 Score=61.75 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=42.4
Q ss_pred HcCCcEeEEeCCCC----CCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh---------HHhhcCeEEEEc
Q 003389 358 VGTANVLYMDEIST----GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE---------TYDLFDDIILLS 418 (824)
Q Consensus 358 v~~p~iLlLDEPTs----GLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e---------~~~lfD~iilL~ 418 (824)
-.+|+++++|--+. .-|.....+++..|++++++.+++++++.+...+. ....+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 34789999996542 12455667788889999988899999886543221 345689888885
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00064 Score=70.86 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=35.5
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCccc
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~ 238 (824)
++++.+ ..+++.++.|+|+|||||||+.+.|+..+. .|.+.++|..+
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~~ 68 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDSF 68 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHHH
Confidence 333433 566789999999999999999999998764 24566777554
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00034 Score=75.13 Aligned_cols=46 Identities=28% Similarity=0.230 Sum_probs=38.1
Q ss_pred cc-eeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcc
Q 003389 188 KD-VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (824)
Q Consensus 188 ~~-vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~ 237 (824)
++ +++..+ |++++++|+||+||||++..|++.+.+. .|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecC
Confidence 45 777766 9999999999999999999999998764 6677776554
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0088 Score=61.25 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
.++|+|++|+|||||++.|.|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 4799999999999999999987553
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.031 Score=61.60 Aligned_cols=29 Identities=41% Similarity=0.665 Sum_probs=25.6
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
+-+++|+++.|.||+|+|||||...++..
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 46899999999999999999999877643
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0011 Score=73.81 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=34.5
Q ss_pred eeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC-----------cCCCCCCcceEeeCCcc
Q 003389 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGK-----------LGKDLRASGKITYCGHE 237 (824)
Q Consensus 190 vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~-----------l~~~~~~sG~I~~nG~~ 237 (824)
+-+.++.|..++|+|+||+|||||+++|+|. ..|. .|.|.++|..
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~---~g~v~v~~~r 70 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN---ESRVPVPDER 70 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCS---EEEEECCCHH
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCce---eEEEEECCcc
Confidence 3446678889999999999999999999997 3333 7888887753
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0011 Score=66.15 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003389 199 MTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG 219 (824)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.033 Score=63.78 Aligned_cols=37 Identities=11% Similarity=0.041 Sum_probs=31.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
..-|+.+-+-+.+|+++.|.|+||+|||||+.-++-.
T Consensus 229 ~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 229 CTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp CTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred hhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence 4567777667999999999999999999998877744
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.011 Score=60.89 Aligned_cols=27 Identities=52% Similarity=0.743 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++..-++|.||+|+|||||.++|+..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 455668999999999999999999765
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0052 Score=79.49 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=27.3
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 193 ~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
=+++|+++.|.||||+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 599999999999999999999999987543
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.015 Score=63.54 Aligned_cols=27 Identities=41% Similarity=0.719 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++..-++|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456679999999999999999999754
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0011 Score=66.25 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
..+++|+|+||||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999875
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0016 Score=63.73 Aligned_cols=27 Identities=44% Similarity=0.695 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998644
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0015 Score=63.57 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0015 Score=62.89 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999997653
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.038 Score=59.60 Aligned_cols=28 Identities=46% Similarity=0.692 Sum_probs=24.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
..|..-++|.||+|+|||||.++++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4567789999999999999999999765
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0019 Score=62.74 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
|.++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997763
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0022 Score=61.48 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|+||+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0023 Score=65.70 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=24.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 193 ~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.-++|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34678899999999999999999999765
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.033 Score=62.00 Aligned_cols=29 Identities=38% Similarity=0.628 Sum_probs=23.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
++|-.=++|-||||+|||+|.++||+...
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 34444589999999999999999998754
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.024 Score=61.14 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=21.8
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALA 218 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~La 218 (824)
+=+++| ++.|-||||+|||||+.-++
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~ 49 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMV 49 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHH
Confidence 567889 89999999999999955443
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0032 Score=61.50 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+|.++.|.|++||||||+.+.|+-.+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999997653
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0029 Score=62.13 Aligned_cols=27 Identities=41% Similarity=0.587 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998654
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0029 Score=69.84 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=26.4
Q ss_pred ccceeeEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 003389 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALA 218 (824)
Q Consensus 187 L~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~La 218 (824)
+++..+.+.+| +++|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46667777674 99999999999999999986
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0026 Score=65.80 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.-+++|.|||||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999665
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0073 Score=65.59 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.++..+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999997653
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0032 Score=65.74 Aligned_cols=25 Identities=32% Similarity=0.643 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.+++|+||||||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999998754
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0036 Score=61.16 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0043 Score=61.51 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999765
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.076 Score=68.82 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=29.8
Q ss_pred cccccee--eEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 185 RILKDVS--GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 185 ~IL~~vs--~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
.-|+.+- +=+++|+++.|.||||+|||||..-++..
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3466665 46999999999999999999998877643
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0044 Score=60.62 Aligned_cols=26 Identities=35% Similarity=0.301 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998665
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0035 Score=61.96 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998763
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0042 Score=59.30 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 003389 199 MTLLLGPPGAGKTTLMLAL 217 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~L 217 (824)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0049 Score=61.25 Aligned_cols=28 Identities=18% Similarity=0.206 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5788999999999999999999987653
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.005 Score=65.55 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=28.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG 235 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG 235 (824)
..|.++.|.|||||||||+.+.|+..++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 4578999999999999999999986542 24556655
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0053 Score=59.33 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG 219 (824)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0046 Score=60.31 Aligned_cols=26 Identities=50% Similarity=0.523 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++..+.|.|++||||||+.+.|+..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998554
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0039 Score=60.59 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+.|+|+|||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999765
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.061 Score=60.47 Aligned_cols=29 Identities=48% Similarity=0.801 Sum_probs=24.8
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+++-+=++|-||||+|||+|.++||+.+.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45566699999999999999999998754
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0057 Score=61.65 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG 219 (824)
.+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.019 Score=57.42 Aligned_cols=53 Identities=21% Similarity=0.353 Sum_probs=40.9
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEc---------cCchhHHhhcCeEEEEc
Q 003389 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL---------QPAPETYDLFDDIILLS 418 (824)
Q Consensus 360 ~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~---------q~~~e~~~lfD~iilL~ 418 (824)
+.+++++||.-- +|+. +++.+++++.. +..+|++-+ .+++++..++|.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 468999999654 6643 36677777764 889999876 67788999999998875
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.016 Score=66.33 Aligned_cols=28 Identities=54% Similarity=0.833 Sum_probs=23.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+++..-++|.||||+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4556679999999999999999998653
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0053 Score=60.35 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 367799999999999999999998654
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0056 Score=61.06 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998754
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0049 Score=60.65 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
.+++|+|++|||||||+..|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999987654
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0025 Score=62.91 Aligned_cols=28 Identities=29% Similarity=0.578 Sum_probs=24.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++++.+++|.|++||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999998654
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0071 Score=59.15 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998543
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0063 Score=60.71 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=24.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999999765
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0076 Score=60.91 Aligned_cols=27 Identities=41% Similarity=0.624 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++|..+.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467789999999999999999998654
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0027 Score=63.47 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
+++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987753
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0079 Score=59.43 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999864
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0063 Score=60.73 Aligned_cols=24 Identities=38% Similarity=0.660 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.+.|+||||||||||++.|....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 357899999999999999997654
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0076 Score=58.80 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
++.|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999997654
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.013 Score=64.62 Aligned_cols=39 Identities=23% Similarity=0.183 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC-----C--C-CCCcceEeeCCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLG-----K--D-LRASGKITYCGH 236 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~-----~--~-~~~sG~I~~nG~ 236 (824)
-.++|+|.||+|||||+++|+|... | + ....|.+.+++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~ 49 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDP 49 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCc
Confidence 4689999999999999999998431 0 1 123688887763
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.16 Score=66.78 Aligned_cols=37 Identities=30% Similarity=0.364 Sum_probs=30.1
Q ss_pred cccccee--eEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 185 RILKDVS--GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 185 ~IL~~vs--~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.-|+.+- +=+++|+++.|.||||+|||||+..++...
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~ 407 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3466554 369999999999999999999988887543
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.049 Score=55.46 Aligned_cols=53 Identities=21% Similarity=0.368 Sum_probs=42.6
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEc---------cCchhHHhhcCeEEEEc
Q 003389 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL---------QPAPETYDLFDDIILLS 418 (824)
Q Consensus 360 ~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~---------q~~~e~~~lfD~iilL~ 418 (824)
+.+++++||.-- +|.. +++.+++++. .++.||++-+ .+++++..++|.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~-~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLAN-RGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhh-CCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 478999999876 6543 3467777766 4889999988 78899999999999886
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0078 Score=63.11 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999874
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0071 Score=58.78 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=18.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.015 Score=56.94 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999876654
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.012 Score=58.55 Aligned_cols=26 Identities=58% Similarity=0.804 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+.+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998654
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.01 Score=60.29 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=22.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998643
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0087 Score=59.36 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999865
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.01 Score=55.97 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.011 Score=57.80 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.-.++|+|++|+|||||++.|.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999864
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.0098 Score=56.24 Aligned_cols=23 Identities=43% Similarity=0.704 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999998754
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.012 Score=56.14 Aligned_cols=23 Identities=52% Similarity=0.793 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999998764
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.012 Score=55.71 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
.++|+|++|+|||||++.|.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=94.95 E-value=0.0093 Score=66.02 Aligned_cols=45 Identities=18% Similarity=0.112 Sum_probs=33.3
Q ss_pred cCCcEeEEeCCCCCCC---HHHHHHHHHHHHHHHHhCCcEEEEEEccCc
Q 003389 359 GTANVLYMDEISTGLD---SSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (824)
Q Consensus 359 ~~p~iLlLDEPTsGLD---s~t~~~I~~~L~~l~~~~~~tvIisi~q~~ 404 (824)
..|.++++||.=.=++ +.....+.+.+++..+ .|..++++++.|.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk-~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK-YNGSLIVISQNVI 308 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG-GTCEEEEEESCGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh-hCeEEEEEcCCHH
Confidence 3588999999988774 6667777777887655 5777777765554
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.012 Score=55.41 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.012 Score=55.32 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++++|++|+|||||++.|.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998753
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.014 Score=59.56 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=24.7
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 193 ~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+++..++.|+|||||||+|..+.|+-.+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566789999999999999999998665
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.015 Score=60.75 Aligned_cols=27 Identities=37% Similarity=0.497 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++.++.|.|++||||||+.+.|+..+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999764
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.012 Score=55.11 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999764
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=94.85 E-value=0.012 Score=55.23 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++++|++|+|||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998763
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=94.84 E-value=0.013 Score=58.89 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
++..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999997653
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.013 Score=55.49 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.014 Score=58.57 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|.||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998654
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.015 Score=57.70 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998543
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.013 Score=56.14 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.013 Score=55.40 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998864
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.015 Score=56.62 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
..+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998654
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.02 Score=60.36 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|+||+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.014 Score=55.17 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998764
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.015 Score=56.81 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.013 Score=55.49 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37999999999999999998753
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.014 Score=55.32 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.016 Score=55.76 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.++|.|++||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998754
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.012 Score=59.41 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+..+.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998654
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.018 Score=55.13 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
+.-.++|+|++|+|||||++.|.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999999875
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.014 Score=55.78 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.012 Score=57.32 Aligned_cols=24 Identities=42% Similarity=0.621 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998654
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.013 Score=56.24 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998654
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.014 Score=54.95 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999874
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.017 Score=59.66 Aligned_cols=26 Identities=38% Similarity=0.604 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++..++|.||+||||||+.+.|+-.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 55689999999999999999998554
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.016 Score=58.24 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998544
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.015 Score=55.67 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.015 Score=57.55 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
..+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999997654
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.014 Score=56.98 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998763
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.014 Score=56.76 Aligned_cols=22 Identities=55% Similarity=0.658 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
.++|+|++|+|||||++.|.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.56 E-value=0.019 Score=55.16 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.+..+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999987653
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.015 Score=55.58 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999876
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.016 Score=54.63 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.019 Score=55.02 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.016 Score=56.29 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.|..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999864
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=94.53 E-value=0.024 Score=61.17 Aligned_cols=36 Identities=28% Similarity=0.258 Sum_probs=31.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
...+|+....+ .|+-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 45889987777 8999999999999999999999864
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.017 Score=55.75 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.018 Score=55.00 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47999999999999999998753
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=94.47 E-value=0.016 Score=56.29 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999998864
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.45 E-value=0.016 Score=56.07 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 7899999999999999998763
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.018 Score=54.59 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-.++|+|++|+|||||++.+.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.018 Score=58.13 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+|..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998655
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.018 Score=55.68 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.019 Score=55.72 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
-++|+|++|+|||||++.|.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4799999999999999999987643
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.032 Score=56.29 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=28.8
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
..++..-. ...|..++|+||+|||||||...|+.+.
T Consensus 23 ~~lHa~~v-~~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLV-DIYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEE-EETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEE-EECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 35666444 4578999999999999999999998653
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.018 Score=56.13 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=94.32 E-value=0.02 Score=54.01 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.019 Score=54.83 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999865
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.19 Score=51.70 Aligned_cols=53 Identities=26% Similarity=0.251 Sum_probs=42.3
Q ss_pred cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEcc---------CchhHHhhcCeEEEEc
Q 003389 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ---------PAPETYDLFDDIILLS 418 (824)
Q Consensus 359 ~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q---------~~~e~~~lfD~iilL~ 418 (824)
.+.+++++||.---.| +.+.++.++. .|+.||++-+. +.+++..++|.|.-|.
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~-~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHh-CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999987654 4455555544 58899999888 8899999999999885
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.02 Score=54.54 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.24 E-value=0.02 Score=54.77 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.021 Score=54.94 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999998753
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.014 Score=56.29 Aligned_cols=23 Identities=43% Similarity=0.554 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG 219 (824)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.0083 Score=59.88 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.++|.||+|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 889999999999999999987654
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.019 Score=59.87 Aligned_cols=23 Identities=48% Similarity=0.663 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57999999999999999999863
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.022 Score=54.67 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.021 Score=56.92 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.022 Score=55.29 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++++|++|+|||||++.|++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998763
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.024 Score=60.72 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999863
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.026 Score=57.37 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.022 Score=55.00 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.024 Score=54.83 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.--++|+|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998754
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.024 Score=55.83 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.023 Score=55.74 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.025 Score=60.63 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999863
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.026 Score=57.06 Aligned_cols=23 Identities=48% Similarity=0.730 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++.|+|||||||+|..+.|+-.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999655
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.028 Score=57.32 Aligned_cols=26 Identities=46% Similarity=0.662 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998654
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.085 Score=69.28 Aligned_cols=38 Identities=29% Similarity=0.346 Sum_probs=32.5
Q ss_pred ccccceee--EEeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 185 RILKDVSG--IVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 185 ~IL~~vs~--~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.-|+.+-+ =++||+++.|-|+||+|||||+..++....
T Consensus 718 ~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a 757 (2050)
T 3cmu_A 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34777775 799999999999999999999999987653
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.025 Score=55.11 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998764
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.97 E-value=0.023 Score=55.42 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.025 Score=55.05 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.027 Score=58.25 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.026 Score=54.36 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=93.90 E-value=0.027 Score=58.87 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.023 Score=59.63 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998753
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.90 E-value=0.084 Score=64.53 Aligned_cols=25 Identities=48% Similarity=0.616 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.-++|.||+|+|||+|.++|+..+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999998764
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=93.90 E-value=0.024 Score=62.58 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++|+|+||+|||||+++|+|..
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999864
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.029 Score=56.04 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
..+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999854
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.022 Score=56.36 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.++|..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998653
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.025 Score=54.95 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.88 E-value=0.025 Score=55.41 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.024 Score=54.46 Aligned_cols=27 Identities=41% Similarity=0.605 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.+..+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 355779999999999999999987754
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.028 Score=56.51 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998654
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.84 E-value=0.028 Score=55.25 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.026 Score=60.02 Aligned_cols=23 Identities=17% Similarity=0.502 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=93.83 E-value=0.027 Score=54.08 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.036 Score=60.27 Aligned_cols=26 Identities=31% Similarity=0.671 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++.++.|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56789999999999999999999765
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.026 Score=58.06 Aligned_cols=30 Identities=27% Similarity=0.353 Sum_probs=22.5
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 193 ~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+..+|.++.|.|++||||||+.+.|+..+.
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999987764
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=93.78 E-value=0.027 Score=58.28 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.027 Score=59.26 Aligned_cols=23 Identities=43% Similarity=0.613 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|.+|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=93.74 E-value=0.032 Score=58.92 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG 219 (824)
.++.|+|+|||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=93.73 E-value=0.03 Score=54.54 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.029 Score=56.13 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
..++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998764
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.027 Score=55.52 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999764
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.029 Score=54.99 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.029 Score=53.97 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999853
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.65 E-value=0.031 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.663 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.65 E-value=0.028 Score=54.84 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.031 Score=55.11 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=93.63 E-value=0.031 Score=53.54 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.029 Score=55.45 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.60 E-value=0.031 Score=54.26 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
.++|+|++|+|||||++.|.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999854
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.031 Score=54.45 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999865
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.032 Score=54.49 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.025 Score=55.07 Aligned_cols=23 Identities=35% Similarity=0.379 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.57 E-value=0.032 Score=55.18 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
--++|+|++|+|||||++.|.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998753
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.55 E-value=0.033 Score=54.63 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.035 Score=62.14 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=24.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-.+.+++.|+|+|||||||+.+.|+..+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3457899999999999999999998643
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.033 Score=55.07 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999865
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.034 Score=54.27 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.036 Score=58.60 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 003389 197 SRMTLLLGPPGAGKTTLMLALA 218 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~La 218 (824)
..+++|.|++||||||+.+.|+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.042 Score=55.79 Aligned_cols=29 Identities=38% Similarity=0.421 Sum_probs=25.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
.+|.++.|.|++||||||+.+.|+..+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999887754
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.019 Score=57.48 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.034 Score=54.78 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
--++|+|++|+|||||++.|.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999998753
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.48 E-value=0.034 Score=56.24 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
.++|+|++|+|||||++.|.|.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.034 Score=54.35 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.036 Score=55.17 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=93.44 E-value=0.03 Score=54.17 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999875
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.013 Score=60.74 Aligned_cols=33 Identities=39% Similarity=0.696 Sum_probs=25.6
Q ss_pred ccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 187 L~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.++....++| ++|.||+|+|||||+++|++..
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 34444444555 7899999999999999999865
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.40 E-value=0.016 Score=62.36 Aligned_cols=41 Identities=5% Similarity=0.095 Sum_probs=28.8
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 360 ~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
+++++++|| ...|+......+.+.+.+... +..+|++..++
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~--~~~~il~~~~~ 173 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG--VTRFCLICNYV 173 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT--TEEEEEEESCG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC--CceEEEEeCch
Confidence 567999999 678898888888888877532 33444444443
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.041 Score=59.49 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=28.1
Q ss_pred ccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 187 L~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
|+.+-+-+.+|..+.|.||||+|||||...++..
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3333367899999999999999999999999753
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=93.37 E-value=0.032 Score=58.73 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999874
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.038 Score=54.33 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
-++|+|++|+|||||++.+.|...+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4899999999999999999986543
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.30 E-value=0.035 Score=55.31 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999988653
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=93.29 E-value=0.029 Score=53.74 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.28 E-value=0.036 Score=55.03 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999754
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.033 Score=55.89 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998764
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.041 Score=53.95 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
=-++|+|++|+|||||++.+.+..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998653
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=93.22 E-value=0.031 Score=58.14 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 577899999999999999999998765
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.20 E-value=0.041 Score=53.74 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 48999999999999999998653
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=93.20 E-value=0.027 Score=54.25 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=9.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999754
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=93.15 E-value=0.024 Score=60.42 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=19.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++-+++|.||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998654
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.13 E-value=0.038 Score=55.14 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999853
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.038 Score=54.30 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
--++|+|++|+|||||++.+.+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999753
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.042 Score=54.97 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=93.09 E-value=0.042 Score=54.58 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998754
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=93.07 E-value=0.042 Score=59.43 Aligned_cols=25 Identities=48% Similarity=0.708 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.+++|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999997653
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.04 Score=60.04 Aligned_cols=25 Identities=32% Similarity=0.635 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.+++|.||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999997653
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=92.99 E-value=0.041 Score=54.28 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999754
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.05 Score=56.21 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
+|.++.|.|++||||||+.+.|+..+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6889999999999999999999987653
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=92.90 E-value=0.043 Score=55.95 Aligned_cols=29 Identities=31% Similarity=0.292 Sum_probs=26.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
++|.++.+.|++||||||+.+.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999999988754
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.88 E-value=0.079 Score=52.21 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=26.8
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG 219 (824)
.+|. +..--.|.-++|.|+||+|||||...|..
T Consensus 6 ~lHa-s~v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHA-NFLVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEES-EEEEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEE-EEEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4444 44556799999999999999999998874
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=92.86 E-value=0.061 Score=57.95 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.+++|+||+|||||||...|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999999765
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=92.82 E-value=0.056 Score=53.48 Aligned_cols=53 Identities=15% Similarity=0.311 Sum_probs=35.5
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEc---------cCchhHHhhcCeEEEEc
Q 003389 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL---------QPAPETYDLFDDIILLS 418 (824)
Q Consensus 360 ~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~---------q~~~e~~~lfD~iilL~ 418 (824)
+++++++||.=. +|+ .+++.|+.+++. +..++++-+ .+.+....++|.|.-|.
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 568999999854 543 366677777764 778887655 22345566788776664
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=92.81 E-value=0.058 Score=55.24 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997663
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=92.76 E-value=0.054 Score=57.19 Aligned_cols=28 Identities=43% Similarity=0.667 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+++.-++|.||+|+|||||.++++..+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3566799999999999999999987763
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.72 E-value=0.049 Score=53.12 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=92.70 E-value=0.047 Score=57.99 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++...++|.||||+|||+|.++|+..+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344578888999999999999999765
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.61 E-value=0.058 Score=54.51 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.+.|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=92.59 E-value=0.061 Score=56.36 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
-.++++|.||+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5789999999999999999998754
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=92.59 E-value=0.027 Score=56.16 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.|.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998854
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=92.58 E-value=0.053 Score=56.44 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=0.063 Score=54.52 Aligned_cols=28 Identities=32% Similarity=0.391 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
+|.++.+-|++||||||+.+.|+..+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4889999999999999999999987753
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.49 E-value=0.055 Score=50.95 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+.-+.|.||+|+|||+|.++|+...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34558999999999999999998764
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=92.49 E-value=0.039 Score=53.61 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003389 199 MTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG 219 (824)
-++|+|++|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999964
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.49 E-value=0.054 Score=53.57 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4899999999999999999865
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.44 E-value=0.058 Score=54.18 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=0.058 Score=54.12 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-.++|+|++|+|||||++.+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998654
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=92.43 E-value=0.056 Score=56.48 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=92.40 E-value=0.075 Score=54.44 Aligned_cols=27 Identities=37% Similarity=0.315 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+|.++.+.|++||||||+.+.|+..+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 688999999999999999999987764
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=92.39 E-value=0.028 Score=55.14 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=4.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.23 E-value=0.067 Score=52.54 Aligned_cols=23 Identities=52% Similarity=0.816 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+.|.||+|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998764
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=92.17 E-value=0.07 Score=57.28 Aligned_cols=27 Identities=48% Similarity=0.754 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.|..-++|.||+|+|||+|.++++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 466679999999999999999998764
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=92.17 E-value=0.07 Score=55.56 Aligned_cols=27 Identities=41% Similarity=0.581 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++..-++|.||+|+|||||.++|+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 345578999999999999999999753
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=92.16 E-value=0.078 Score=60.15 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=30.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
..+++.+ ..+-+|+.++|+||||+|||||++.|++...
T Consensus 139 ir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 139 IKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp CHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred chHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 3456666 5566799999999999999999999987643
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=92.11 E-value=0.063 Score=53.22 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
=.++|+|++|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999854
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=92.11 E-value=0.071 Score=54.92 Aligned_cols=24 Identities=42% Similarity=0.556 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
--++|+||+||||||+.+.|+-.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 357999999999999999998655
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=92.08 E-value=0.05 Score=55.12 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=24.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+++...+++.||||+||||+..+|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4555578999999999999999999765
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=92.05 E-value=0.072 Score=57.73 Aligned_cols=29 Identities=38% Similarity=0.707 Sum_probs=25.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
.+|..++|.||+|+|||||.++++..+..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 35789999999999999999999987653
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.04 E-value=0.068 Score=60.18 Aligned_cols=29 Identities=38% Similarity=0.674 Sum_probs=24.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+++-+=++|-||||+|||+|.++||+...
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 45556789999999999999999998754
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.04 E-value=0.065 Score=53.10 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998653
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=92.03 E-value=0.063 Score=60.69 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999885
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=91.98 E-value=0.088 Score=56.61 Aligned_cols=25 Identities=36% Similarity=0.663 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
..++.|+||+|||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999999664
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=91.94 E-value=0.072 Score=53.34 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.90 E-value=0.072 Score=60.02 Aligned_cols=29 Identities=52% Similarity=0.911 Sum_probs=25.1
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
++|-.=++|.||||+|||+|.++||+...
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 55667789999999999999999998754
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=91.67 E-value=0.091 Score=57.38 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
...++|+|++|+|||||++.|++.+.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999987763
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=91.64 E-value=0.081 Score=55.57 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+.-+.|.||+|+|||||.++|+..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999998763
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=91.51 E-value=0.099 Score=56.01 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
++.-+.|.||+|+|||+|+++|+..+.
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999997643
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=91.40 E-value=0.11 Score=55.52 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+--++|+|++|+|||||++.+.+..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999988763
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=91.39 E-value=0.093 Score=59.16 Aligned_cols=28 Identities=36% Similarity=0.500 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999987653
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=91.39 E-value=0.1 Score=58.17 Aligned_cols=25 Identities=32% Similarity=0.638 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-.+++|+||+|||||||.+.|+-.+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 4588999999999999999999765
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.35 E-value=0.031 Score=63.29 Aligned_cols=31 Identities=35% Similarity=0.577 Sum_probs=24.4
Q ss_pred eEEeCCe--EEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 192 GIVKPSR--MTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 192 ~~I~~Ge--~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
-.++.|+ -+.|.||+|+|||||.++|+....
T Consensus 43 ~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 43 RAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3344444 489999999999999999998753
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=91.18 E-value=0.093 Score=57.19 Aligned_cols=26 Identities=46% Similarity=0.612 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++.-++|.||||+||||+.++|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45578999999999999999999765
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=91.09 E-value=0.07 Score=58.18 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.08 E-value=0.12 Score=54.67 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+-.++++|.||+|||||+|.|.|...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 44689999999999999999998753
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=91.08 E-value=0.11 Score=56.49 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++..+.|.||+|+|||||++.++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998765
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=91.06 E-value=0.094 Score=58.35 Aligned_cols=41 Identities=12% Similarity=-0.119 Sum_probs=29.6
Q ss_pred hHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEE
Q 003389 317 VTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYM 366 (824)
Q Consensus 317 ~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlL 366 (824)
.+..+++.++.... . ..+|.+|.+++.-...+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~----~-----~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED----P-----TKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC----G-----GGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc----c-----ccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 35667777776543 1 24899998888777777778988887
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=91.05 E-value=0.093 Score=57.32 Aligned_cols=27 Identities=48% Similarity=0.754 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++..-++|.||+|+|||||.++|+..+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455668999999999999999999765
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=90.87 E-value=0.1 Score=58.67 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=90.81 E-value=0.027 Score=60.43 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.|.-+.|.||+|+|||||+++|+..+.
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 356899999999999999999998653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 824 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-24 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-22 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 5e-22 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 8e-22 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-21 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-19 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 4e-19 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-18 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-18 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-18 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-17 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-17 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-17 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-17 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-16 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-16 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-16 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 8e-16 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-13 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 6e-05 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-05 | |
| d2cdna1 | 181 | c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium | 5e-04 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 0.001 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 0.001 | |
| d1gvnb_ | 273 | c.37.1.21 (B:) Plasmid maintenance system epsilon/ | 0.002 | |
| d1akya1 | 180 | c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak | 0.002 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 0.002 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 0.003 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 0.003 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 0.003 | |
| d3adka_ | 194 | c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [ | 0.004 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 100 bits (251), Expect = 2e-24
Identities = 54/271 (19%), Positives = 98/271 (36%), Gaps = 52/271 (19%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+ + ++ +K +LLGP G GKTT + +AG G+I + ++
Sbjct: 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLP 74
Query: 243 PQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
P+ R + + Q MTV E + F + + E +
Sbjct: 75 PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKK----------FPKDEIDKRV------- 117
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
+ ++L ++ + +SGGQ++RV +V
Sbjct: 118 -----------------RWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEP 155
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
+VL MDE + LD+ + +K++ L VT I E + D I +++ GQ
Sbjct: 156 DVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQ 214
Query: 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
++ G V + P VA F+
Sbjct: 215 LLQIGSPTEV--------YLRPNSVFVATFI 237
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 94.3 bits (234), Expect = 4e-22
Identities = 52/255 (20%), Positives = 94/255 (36%), Gaps = 35/255 (13%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+ L VS V +TL++GP G+GK+TL+ + G L D G++ + ++
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKE 72
Query: 243 P----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
P Q EMTV E L C G L + +++ ++
Sbjct: 73 PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE--- 129
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
+L+ L L D G+ +SGGQ K V G L+
Sbjct: 130 ------------------KAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALM 166
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
++ MDE G+ I + ++ +T ++ + D + ++
Sbjct: 167 TNPKMIVMDEPIAGVAPGLAHDIFNHVLEL-KAKGITFLII-EHRLDIVLNYIDHLYVMF 224
Query: 419 EGQIVYQGPRDNVLE 433
GQI+ +G + ++
Sbjct: 225 NGQIIAEGRGEEEIK 239
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.2 bits (234), Expect = 5e-22
Identities = 49/256 (19%), Positives = 101/256 (39%), Gaps = 42/256 (16%)
Query: 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE 240
+ V +L+ ++ ++P +T L+GP G+GK+T+ L G++ G L +
Sbjct: 24 RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQ 80
Query: 241 FVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ + R A + Q + +++E + + G+
Sbjct: 81 YEHRYLHRQVAAVGQ-EPQVFGRSLQENIAY------------------------GLTQK 115
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
P ++ A +G I GL DT V + + +SGGQ++ V L
Sbjct: 116 PTMEEITAAAVKSGAH--------SFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARAL 166
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417
+ VL +D+ ++ LD+++ Q+ + L + ++++ + D I+ L
Sbjct: 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFL 224
Query: 418 SEGQIVYQGPRDNVLE 433
G I G ++E
Sbjct: 225 EGGAIREGGTHQQLME 240
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 93.0 bits (231), Expect = 8e-22
Identities = 53/262 (20%), Positives = 93/262 (35%), Gaps = 49/262 (18%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
R+++ L +VS V ++ ++G GAGK+TL+ + G + G E
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 68
Query: 238 LNEFVPQ------RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 291
L R I QH TV + + E +
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT----------PKDEVK 118
Query: 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRV 351
+ +L ++GL D+ + +SGGQK+RV
Sbjct: 119 RRV------------------------TELLSLVGLGDKHDSYPSN-----LSGGQKQRV 149
Query: 352 TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411
L VL DE ++ LD +TT I + LK + L +T+++ + +
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRIC 208
Query: 412 DDIILLSEGQIVYQGPRDNVLE 433
D + ++S G+++ Q V
Sbjct: 209 DCVAVISNGELIEQDTVSEVFS 230
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 92.9 bits (231), Expect = 1e-21
Identities = 55/255 (21%), Positives = 92/255 (36%), Gaps = 43/255 (16%)
Query: 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE 240
ILKD++ ++ +G G GK+TL+ + SG+I GH + +
Sbjct: 28 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKD 84
Query: 241 FVPQRTCAYIS--QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
F+ I Q D TV+E + G E+ K A
Sbjct: 85 FLTGSLRNQIGLVQQDNILFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDF- 136
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
I+ L DT VG E +SGGQK+R++ + +
Sbjct: 137 -------------------------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFL 170
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
+L +DE ++ LD + I + L + D T ++ + T D I+++
Sbjct: 171 NNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHR--LSTITHADKIVVIE 226
Query: 419 EGQIVYQGPRDNVLE 433
G IV G ++
Sbjct: 227 NGHIVETGTHRELIA 241
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 86.4 bits (214), Expect = 2e-19
Identities = 50/256 (19%), Positives = 98/256 (38%), Gaps = 44/256 (17%)
Query: 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE 240
R V L++++ + + L+G G+GK+T+ + D G I GH+L E
Sbjct: 25 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLRE 81
Query: 241 FVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ + A +SQ+ + T ++ + A
Sbjct: 82 YTLASLRNQVALVSQNVHLFNDTVANNIAYA-------RTEEYSREQIEEAARMAYAMDF 134
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
I +D DT++G E +SGGQ++R+ L
Sbjct: 135 --------------------------INKMDNGLDTIIG-ENGVLLSGGQRQRIAIARAL 167
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417
+ + +L +DE ++ LD+ + I L ++ + T +V + T + D+I+++
Sbjct: 168 LRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHR--LSTIEQADEIVVV 223
Query: 418 SEGQIVYQGPRDNVLE 433
+G IV +G +L
Sbjct: 224 EDGIIVERGTHSELLA 239
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 85.0 bits (210), Expect = 4e-19
Identities = 54/276 (19%), Positives = 98/276 (35%), Gaps = 54/276 (19%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
ILK +S ++ + L+GP GAGKTT + ++ + SG +T G + E
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEP 70
Query: 243 PQ--RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
+ + +Y+ + + M E L F EI
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS--------------------SSSEI 110
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
+ + + +I GL V S G +++ L+
Sbjct: 111 EEMV--------------ERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVN 151
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420
+ +DE ++GLD ++ K LKQ +T++V+ E L D I L+ G
Sbjct: 152 PRLAILDEPTSGLDVLNAREVRKILKQA-SQEGLTILVSSHNM-LEVEFLCDRIALIHNG 209
Query: 421 QIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVT 456
IV G + + + + + + + +EV
Sbjct: 210 TIVETGTVEEL--------KERYKAQNIEEVFEEVV 237
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 85.0 bits (210), Expect = 1e-18
Identities = 51/331 (15%), Positives = 109/331 (32%), Gaps = 88/331 (26%)
Query: 103 LLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNV 162
++E++ EE + L++++ + V + HL + G+
Sbjct: 4 IMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGN-------------- 49
Query: 163 ALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222
+LK+++ ++ M + G G+GKT+L++ + G+L
Sbjct: 50 ----------------------PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE 87
Query: 223 KDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELL 282
G I + G F Q + T++E + F
Sbjct: 88 AS---EGIIKHSGR--VSFCSQFSWIM---------PGTIKENIIFGVS----------- 122
Query: 283 AELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342
+ + +KA + I +T++G+
Sbjct: 123 ------------YDEYRYKSVVKACQLQ-----------QDITKFAEQDNTVLGEGGVT- 158
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQ+ R++ + A++ +D LD T Q+ + + + T I+ +
Sbjct: 159 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRILVTSK 217
Query: 403 PAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433
E D I++L +G + G +
Sbjct: 218 --MEHLRKADKILILHQGSSYFYGTFSELQS 246
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 83.7 bits (207), Expect = 1e-18
Identities = 42/257 (16%), Positives = 89/257 (34%), Gaps = 47/257 (18%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
+ + LK+V+ +K ++GP G+GK+T++ + G++ +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIK 68
Query: 238 LN-----EFVPQRTC--AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 290
N E R ++ Q +T E ++ ++ +S E+
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL-------PLIFKYRGAMSGEER 121
Query: 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKR 350
+ L+ L + + + +SGGQ++R
Sbjct: 122 RK---------------------------RALECLKMAELEERF-ANHKPNQLSGGQQQR 153
Query: 351 VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410
V L ++ D+ + LDS T +I + LK++ T++V
Sbjct: 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD--INVARF 211
Query: 411 FDDIILLSEGQIVYQGP 427
+ II L +G++ +
Sbjct: 212 GERIIYLKDGEVEREEK 228
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 82.7 bits (204), Expect = 2e-18
Identities = 56/271 (20%), Positives = 99/271 (36%), Gaps = 52/271 (19%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
V + KD++ + + +GP G GK+TL+ +AG SG + +N+
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 243 PQRTC-AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
P + Q + ++V E + F + G ++
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE--------VINQRV--------- 111
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
+ V ++L L D +SGGQ++RV G LV
Sbjct: 112 -----------------NQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEP 149
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
+V +DE + LD++ Q+ + ++ L TMI E L D I++L G+
Sbjct: 150 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGR 208
Query: 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+ G E + + P + VA F+
Sbjct: 209 VAQVGKPL---ELYHY-----PADRFVAGFI 231
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 81.1 bits (200), Expect = 1e-17
Identities = 53/253 (20%), Positives = 91/253 (35%), Gaps = 42/253 (16%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
S +IL+D+S +P+ + GP G GK+T+ L +G+IT G ++
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNIS 70
Query: 243 PQRTCAYIS--QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
+ + I D T+RE L + + +L+ PD
Sbjct: 71 LENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL- 129
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
+T VG E ISGGQ++R+ +
Sbjct: 130 -------------------------------NTEVG-ERGVKISGGQRQRLAIARAFLRN 157
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420
+L +DE + LDS + + K L ++ T +V + T D I + +G
Sbjct: 158 PKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHR--LSTIVDADKIYFIEKG 213
Query: 421 QIVYQGPRDNVLE 433
QI G + ++
Sbjct: 214 QITGSGKHNELVA 226
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 81.1 bits (200), Expect = 1e-17
Identities = 56/270 (20%), Positives = 93/270 (34%), Gaps = 44/270 (16%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
V ++++S VK +LLGP G GKTT + +AG G+I + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPE 71
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+ + L L ++ R+E +
Sbjct: 72 KGIFVPPKDRDIAMVFQSY---ALYPHMTVYDNIAFPLKLRKVPRQEIDQRV-------- 120
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
V ++LGL + + +SGGQ++RV G +V
Sbjct: 121 ----------------REVAELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQ 159
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422
V MDE + LD+ ++ LK++ L VT I E + D I +++ G +
Sbjct: 160 VFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVL 218
Query: 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
G D V + P VA F+
Sbjct: 219 QQVGSPDEV--------YDKPANTFVAGFI 240
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 79.6 bits (196), Expect = 4e-17
Identities = 49/254 (19%), Positives = 94/254 (37%), Gaps = 39/254 (15%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
K S IL +++ +K + ++G G+GK+TL + + +G++ GH+L
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLA 68
Query: 240 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
P + + L S + + P
Sbjct: 69 LADPNWLRRQVGVVLQDNV-----------------------LLNRSIIDNISLANPGMS 105
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
++ + A +AG + + E G+SGGQ++R+ LV
Sbjct: 106 VEKVIYAAKLAG---------AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 156
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419
+L DE ++ LD + I + + ++ T+I+ + T D II++ +
Sbjct: 157 NPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHR--LSTVKNADRIIVMEK 212
Query: 420 GQIVYQGPRDNVLE 433
G+IV QG +L
Sbjct: 213 GKIVEQGKHKELLS 226
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 79.4 bits (195), Expect = 4e-17
Identities = 56/279 (20%), Positives = 105/279 (37%), Gaps = 57/279 (20%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
KK V L +V+ ++ +LGP GAGKTT M +AG +G++ + +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVA 70
Query: 240 EFVPQ------RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
R + Q + +T E + F + + R++
Sbjct: 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEE-------IRKR--- 120
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353
+ V KIL + + R +SG Q++RV
Sbjct: 121 ------------------------VEEVAKILDIHHVLNHFP-----RELSGAQQQRVAL 151
Query: 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413
LV ++L +DE + LD+ +K++ L VT++V PA + + + D
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADR 210
Query: 414 IILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+ +L +G++V G + + +++ P VA +
Sbjct: 211 VGVLVKGKLVQVGKPE---DLYDN-----PVSIQVASLI 241
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 78.0 bits (192), Expect = 1e-16
Identities = 49/272 (18%), Positives = 103/272 (37%), Gaps = 36/272 (13%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+LK VS + + ++G G+GK+T + + G I G +N
Sbjct: 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVR 70
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLG-VGTRYELLAELSRREKQAGIKPDPEID 301
+ ++ + L L V + L + ++ E +
Sbjct: 71 DKDGQLKVAD----------KNQLRLLRTRLTMVFQHFNLWSHMTVLENVM--------E 112
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
A ++ + ++ + L +G+D A + +SGGQ++RV+ L
Sbjct: 113 APIQVLGLSKHDARERALKYLAKVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEP 168
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
+VL DE ++ LD ++ + ++Q+ TM+V + + +I L +G+
Sbjct: 169 DVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMG-FARHVSSHVIFLHQGK 226
Query: 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFLQ 453
I +G + + F + P+ + FL+
Sbjct: 227 IEEEGDPE---QVFGN-----PQSPRLQQFLK 250
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 77.0 bits (189), Expect = 2e-16
Identities = 58/275 (21%), Positives = 104/275 (37%), Gaps = 55/275 (20%)
Query: 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238
S+K L ++S V+ ++LGP GAGKT + +AG D SG+I G ++
Sbjct: 8 SRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDV 64
Query: 239 NEFVPQR-TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ P++ A++ Q+ M V++ L+F R + +R
Sbjct: 65 TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP--------KRVLDT----- 111
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
+ L ++ D +SGG+++RV L
Sbjct: 112 ------------------------ARDLKIEHLLDRNP-----LTLSGGEQQRVALARAL 142
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417
V +L +DE + LD T + L + +T++ E + D I ++
Sbjct: 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVV 201
Query: 418 SEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+G+++ G + E FE P VA F+
Sbjct: 202 MDGKLIQVGKPE---EIFEK-----PVEGRVASFV 228
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 76.5 bits (188), Expect = 3e-16
Identities = 45/252 (17%), Positives = 90/252 (35%), Gaps = 42/252 (16%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-LRASGKITYCGHELNEF 241
++ +K + V ++ L+G GAGKTT + A+AG + + ++
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
+ + A + + E+TV E L K I
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAY---------------------NRKDKEGIK 116
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
++ + L + G +SGG+++ + G L+
Sbjct: 117 RDLEWIF-------------SLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRP 158
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
+L MDE S GL ++ + ++++ + T+++ Q A + +L GQ
Sbjct: 159 KLLMMDEPSLGLAPILVSEVFEVIQKI-NQEGTTILLV-EQNALGALKVAHYGYVLETGQ 216
Query: 422 IVYQGPRDNVLE 433
IV +G +L+
Sbjct: 217 IVLEGKASELLD 228
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 74.6 bits (183), Expect = 8e-16
Identities = 30/220 (13%), Positives = 74/220 (33%), Gaps = 47/220 (21%)
Query: 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238
S +L+ ++ ++ + GP G GKTTL+ ++ L G+I Y G +
Sbjct: 9 SVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPI 65
Query: 239 NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+ + ++ + + +++V + L GV + +
Sbjct: 66 TKV--KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA------------- 110
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
L+ + + + +S G +RV L+
Sbjct: 111 -----------------------LESVEVLDLKKKL------GELSQGTIRRVQLASTLL 141
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV 398
A + +D+ +D + ++ K + +++ + +I
Sbjct: 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 75.0 bits (184), Expect = 1e-15
Identities = 51/258 (19%), Positives = 84/258 (32%), Gaps = 60/258 (23%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
L +SG V+ + L+GP GAGK+TL+ +AG G I + G L +
Sbjct: 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM----TSGKGSIQFAGQPLEAWSATK 69
Query: 245 --RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
AY+SQ V L + +R E
Sbjct: 70 LALHRAYLSQQQTPPFATPVWHYLTLHQH------------DKTRTELL----------- 106
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
+ V L LD +SGG+ +RV +++
Sbjct: 107 ----------------NDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITP 145
Query: 363 -------VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415
+L +DE LD + + K L + + ++++ T
Sbjct: 146 QANPAGQLLLLDEPMNSLDVAQQSALDKILSAL-CQQGLAIVMSSHDLN-HTLRHAHRAW 203
Query: 416 LLSEGQIVYQGPRDNVLE 433
LL G+++ G R+ VL
Sbjct: 204 LLKGGKMLASGRREEVLT 221
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 68.5 bits (167), Expect = 2e-13
Identities = 47/252 (18%), Positives = 90/252 (35%), Gaps = 55/252 (21%)
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEM 260
LLGP GAGK+ + +AG + D G++ G ++ P +R ++ Q +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY 320
+V + + R + R + E+
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREM----------------------------------- 110
Query: 321 VLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQ 380
+ + D +SGG+++RV LV +L +DE + +D T
Sbjct: 111 ------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164
Query: 381 ICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGF 440
+ + L+ + DV ++ E L D++ ++ G+IV +G +
Sbjct: 165 LMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELFS------- 216
Query: 441 KCPERKGVADFL 452
+ VA+FL
Sbjct: 217 --AKNGEVAEFL 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 42.3 bits (98), Expect = 6e-05
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 201 LLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260
++ G PG GKTTL+ + +LGK + E + I+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 261 TVRETLDFSGRCLGVGTRYELL 282
+ T GV +Y
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEE 82
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.5 bits (91), Expect = 5e-04
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 201 LLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260
LLLGPPGAGK T + LA KLG ++G++ E + Y+ DL ++
Sbjct: 4 LLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDL 63
Query: 261 TVR 263
T
Sbjct: 64 TNE 66
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 38.8 bits (89), Expect = 0.001
Identities = 11/63 (17%), Positives = 19/63 (30%)
Query: 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLH 256
+RM +L G AGK+ ++ L L + A G + +
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGV 62
Query: 257 HGE 259
Sbjct: 63 SIG 65
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 39.2 bits (90), Expect = 0.001
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 9/88 (10%)
Query: 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-------LRASGKITYCGHEL-NEF 241
+ +V + L+ P GAGK+ L L LA ++ +G + Y E
Sbjct: 23 LPNMV-AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTA 81
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFS 269
+ R A + + L
Sbjct: 82 IHHRLHALGAHLSAEERQAVADGLLIQP 109
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Score = 38.4 bits (88), Expect = 0.002
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221
++ L V+ LL G PG+GKT+L A+ +
Sbjct: 10 QFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEET 56
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.6 bits (86), Expect = 0.002
Identities = 16/68 (23%), Positives = 25/68 (36%)
Query: 201 LLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260
+L+GPPGAGK T L + A+G + + + Q L ++
Sbjct: 6 VLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDI 65
Query: 261 TVRETLDF 268
V D
Sbjct: 66 MVNMIKDE 73
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 38.5 bits (89), Expect = 0.002
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 180 KKRSVRILKD-VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL 225
LK V I K R L GP +GKTTL AL G
Sbjct: 137 DSVVYDFLKCMVYNIPKK-RYWLFKGPIDSGKTTLAAALLELCGGKA 182
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (86), Expect = 0.003
Identities = 11/79 (13%), Positives = 23/79 (29%)
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250
G ++ +T + G GKT + LA + G + E +
Sbjct: 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLA 76
Query: 251 SQHDLHHGEMTVRETLDFS 269
V + + ++
Sbjct: 77 VAERYGLSGSDVLDNVAYA 95
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 37.3 bits (85), Expect = 0.003
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY 233
++ ++ GP G GK+T LA +L G I
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIIN 38
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.003
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 197 SRMTLLLGPPGAGKTTLMLALAGKLGKD 224
+R L GPPG GKTTL+ + L
Sbjct: 1 ARHVFLTGPPGVGKTTLIHKASEVLKSS 28
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 36.9 bits (84), Expect = 0.004
Identities = 13/69 (18%), Positives = 27/69 (39%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQH 253
+K S++ ++G PG+GK T + K G ++G + + + +
Sbjct: 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKG 64
Query: 254 DLHHGEMTV 262
L E +
Sbjct: 65 QLVPLETVL 73
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 824 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.71 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.5 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.44 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.75 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.35 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.26 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.72 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.71 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.42 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.25 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.22 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.08 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.06 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.05 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.9 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.9 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.89 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.86 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.86 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.84 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.82 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.73 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.57 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.52 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.52 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.52 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.45 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.34 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.29 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.27 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.25 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.2 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.2 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.13 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.1 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.07 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.06 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.0 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.96 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.94 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.91 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.91 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.9 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.87 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.87 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.87 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.78 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.73 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.68 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.68 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.62 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.6 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.6 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.59 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.58 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.58 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.57 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.57 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.53 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.48 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.47 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.46 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.45 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.43 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.43 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.41 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.4 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.33 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.32 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.31 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.29 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.27 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.27 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.22 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.2 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.19 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.17 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.16 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.15 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.11 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.05 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.01 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.0 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.94 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.93 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.84 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.8 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.67 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.59 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 94.56 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.53 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.53 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.5 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.49 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.48 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.43 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.34 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.31 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.3 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.24 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.1 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.1 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.06 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.04 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.97 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 93.95 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.88 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.86 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.8 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.79 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.75 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 93.72 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.64 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.61 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.6 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.59 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.54 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.5 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.46 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.37 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.36 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.36 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.28 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.25 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.22 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.06 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.04 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.01 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.99 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.96 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.95 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.95 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.89 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.88 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.83 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.82 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.81 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.78 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.72 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 92.7 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.64 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.62 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.58 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.57 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 92.56 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.53 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.37 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.37 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.34 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.32 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.32 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.24 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.24 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.22 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 92.17 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.15 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.09 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.06 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.02 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.0 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.93 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 91.88 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 91.77 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.73 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 91.7 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.67 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 91.66 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.6 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.58 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.54 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.53 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.45 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.38 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 91.37 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.37 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 91.37 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.32 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 91.32 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.12 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.11 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.86 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.68 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.52 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.47 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 90.27 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.17 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.12 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 89.79 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 89.73 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 89.67 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 89.61 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 89.61 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 89.33 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 89.32 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 89.19 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.97 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 88.9 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.66 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 88.31 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 88.18 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.95 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 87.82 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 86.93 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 86.27 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 85.87 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 85.83 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.59 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 85.45 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 85.1 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 84.65 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 84.45 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 84.28 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 83.93 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 83.19 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 82.65 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 81.33 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 81.24 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 81.08 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.1e-51 Score=420.42 Aligned_cols=218 Identities=26% Similarity=0.374 Sum_probs=155.6
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lT 261 (824)
++++|+||||+|++||+++|+|||||||||||++|+|+++|+ +|+|.+||+++....+ +|.+|||+|++.+++.+|
T Consensus 12 ~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~t 88 (232)
T d2awna2 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 88 (232)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC-----
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEECCCCchhhceeeeeccccccccchh
Confidence 467999999999999999999999999999999999999997 9999999999976654 467999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.|++.+++... .+...+++++|+.++|++..|+.+.+
T Consensus 89 v~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~l~~~~~~~~~~---- 130 (232)
T d2awna2 89 VAENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRKPKA---- 130 (232)
T ss_dssp --------------------------------------------------CHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhCCChhhhhCChhh----
Confidence 9999999876654310 11123467899999999999888765
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.|+++.++.|+|+|+++ |...++.++||||++|++|+
T Consensus 131 -LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vT-Hd~~~a~~~~dri~vm~~G~ 208 (232)
T d2awna2 131 -LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT-HDQVEAMTLADKIVVLDAGR 208 (232)
T ss_dssp ----------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEE-SCHHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999888899999876 55678999999999999999
Q ss_pred EEEecChhhHHHHHHHcCCCCCCCCCHHHH
Q 003389 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADF 451 (824)
Q Consensus 422 iv~~G~~~~~~~~f~~~G~~~p~~~~~adf 451 (824)
|+++|+++++.+ .|.+.-+++|
T Consensus 209 iv~~G~~~el~~--------~P~~~~v~~f 230 (232)
T d2awna2 209 VAQVGKPLELYH--------YPADRFVAGF 230 (232)
T ss_dssp EEEEECHHHHHH--------SCSBHHHHHH
T ss_pred EEEEeCHHHHHh--------CCCCHHHHHh
Confidence 999999999853 3555445554
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=3.3e-50 Score=414.32 Aligned_cols=223 Identities=24% Similarity=0.334 Sum_probs=192.5
Q ss_pred cccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEec
Q 003389 174 LHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQ 252 (824)
Q Consensus 174 ~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q 252 (824)
.++.+++.. .+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.+..+ ++.+|||+|
T Consensus 5 ~nlsk~y~~--~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q 79 (229)
T d3d31a2 5 ESLSRKWKN--FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQ 79 (229)
T ss_dssp EEEEEECSS--CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECT
T ss_pred EEEEEEeCC--EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CCEEEEccEeccccchhHhcceeecc
Confidence 344444432 4899999999999999999999999999999999999997 9999999999987554 467999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccc
Q 003389 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d 332 (824)
++.+++.+||+||+.|+.+.++... ..+++++++.+||.+..|
T Consensus 80 ~~~l~~~~tV~enl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~ 122 (229)
T d3d31a2 80 NYSLFPHMNVKKNLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLD 122 (229)
T ss_dssp TCCCCTTSCHHHHHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTT
T ss_pred ccccCccccHHHHHHHHHhhccccH-------------------------------------HHHHHHHHHHhcchhhHh
Confidence 9999999999999999876554311 123566889999999998
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
..+++ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.|.|+|+++| ...++.++||
T Consensus 123 ~~~~~-----LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtH-d~~~~~~~~d 196 (229)
T d3d31a2 123 RNPLT-----LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH-DQTEARIMAD 196 (229)
T ss_dssp SCGGG-----SCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEES-CHHHHHHHCS
T ss_pred CChhh-----CCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcC-CHHHHHHhCC
Confidence 88765 99999999999999999999999999999999999999999999998877899988765 5668999999
Q ss_pred eEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 003389 413 DIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (824)
||++|++|+++++|+++++. ..|...-+++|+
T Consensus 197 rv~vm~~G~iv~~g~~~el~--------~~P~~~~v~~fl 228 (229)
T d3d31a2 197 RIAVVMDGKLIQVGKPEEIF--------EKPVEGRVASFV 228 (229)
T ss_dssp EEEEESSSCEEEEECHHHHH--------SSCCTTHHHHHH
T ss_pred EEEEEECCEEEEEcCHHHHH--------hCCCCHHHHhcc
Confidence 99999999999999999984 356665566664
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.9e-50 Score=418.67 Aligned_cols=207 Identities=24% Similarity=0.354 Sum_probs=177.9
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lT 261 (824)
+.++|+||||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.+||+++....+ +|.+|||+|++.+++.+|
T Consensus 18 ~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 94 (239)
T d1v43a3 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMT 94 (239)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCC
T ss_pred CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEEcceecccCCcccceEEEEeechhhcccch
Confidence 467999999999999999999999999999999999999997 9999999999976544 467999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.|.++.++... . +...+++++|+.+||++.+|..+.
T Consensus 95 v~enl~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~----- 135 (239)
T d1v43a3 95 VYENIAFPLKIKKFPK----------D------------------------EIDKRVRWAAELLQIEELLNRYPA----- 135 (239)
T ss_dssp HHHHHHTTCC--CCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTSCTT-----
T ss_pred HHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhcCChh-----
Confidence 9999999887765421 1 112356789999999988887765
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||+|||||+.+|++|+|||||+|||+.++.+|.+.|+++.++.|+|+|+++| ...++.++||||++|++|+
T Consensus 136 ~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTH-d~~~a~~~~dri~vm~~G~ 214 (239)
T d1v43a3 136 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH-DQVEAMTMGDRIAVMNRGQ 214 (239)
T ss_dssp TCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEES-CHHHHHHHCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeC-CHHHHHHhCCEEEEEECCE
Confidence 599999999999999999999999999999999999999999999998877999998765 5668999999999999999
Q ss_pred EEEecChhhHH
Q 003389 422 IVYQGPRDNVL 432 (824)
Q Consensus 422 iv~~G~~~~~~ 432 (824)
|+++|+++++.
T Consensus 215 iv~~G~~~el~ 225 (239)
T d1v43a3 215 LLQIGSPTEVY 225 (239)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEcCHHHHH
Confidence 99999999984
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.6e-50 Score=417.94 Aligned_cols=219 Identities=23% Similarity=0.312 Sum_probs=190.7
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLH 256 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d~~ 256 (824)
...+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.+|||+|++.+
T Consensus 17 ~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L 93 (242)
T d1oxxk2 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (242)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCC---CceEEECCEEeecCchhhcchhhccceEEeccccc
Confidence 467999999999999999999999999999999999999997 999999999875421 14679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
+|.+||+||+.|+++.++... . +.+.+++++|+.+||++.+|..++
T Consensus 94 ~p~ltv~eni~~~l~~~~~~~----------~------------------------~~~~~v~~~l~~~gL~~~~~~~p~ 139 (242)
T d1oxxk2 94 YPNLTAFENIAFPLTNMKMSK----------E------------------------EIRKRVEEVAKILDIHHVLNHFPR 139 (242)
T ss_dssp CTTSCHHHHHHGGGTTSSCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTSCGG
T ss_pred cccccHHHHhhhhhHhhcCCH----------H------------------------HHHHHHHHHHhhcChHhhhhCChh
Confidence 999999999999987665421 0 112346789999999998888876
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+ |||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.++.|.|+|+++| ...++.++||||++
T Consensus 140 ~-----LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTH-d~~~~~~~~dri~v 213 (242)
T d1oxxk2 140 E-----LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH-DPADIFAIADRVGV 213 (242)
T ss_dssp G-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEES-CHHHHHHHCSEEEE
T ss_pred h-----CCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEEC-CHHHHHHhCCEEEE
Confidence 5 99999999999999999999999999999999999999999999998777999988765 56689999999999
Q ss_pred EcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 003389 417 LSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (824)
|++|+|++.|+++++.+ .|.+.-+++|+
T Consensus 214 m~~G~iv~~g~~~el~~--------~P~~~~~~~fl 241 (242)
T d1oxxk2 214 LVKGKLVQVGKPEDLYD--------NPVSIQVASLI 241 (242)
T ss_dssp EETTEEEEEECHHHHHH--------SCSSHHHHHHH
T ss_pred EECCEEEEEcCHHHHHh--------CCCCHHHHhcc
Confidence 99999999999999843 56665566664
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=6.8e-50 Score=415.04 Aligned_cols=218 Identities=28% Similarity=0.356 Sum_probs=189.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-------CCceEEEEecCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDL 255 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~i~yv~Q~d~ 255 (824)
+.++|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.... .++.+|||+|++.
T Consensus 15 ~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~ 91 (240)
T d1g2912 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC
T ss_pred CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEEecccchhhhcccccccceecccchh
Confidence 467999999999999999999999999999999999999997 999999999875322 1467999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (824)
+++.+||+||+.|+.+.++... .+ ...+++++|+.+||++.+|.++
T Consensus 92 L~~~ltV~eni~~~~~~~~~~~----------~e------------------------~~~~v~~~l~~~~l~~~~~~~p 137 (240)
T d1g2912 92 LYPHMTVYDNIAFPLKLRKVPR----------QE------------------------IDQRVREVAELLGLTELLNRKP 137 (240)
T ss_dssp CCTTSCHHHHHHHHHHHTTCCH----------HH------------------------HHHHHHHHHHHHTCGGGTTCCG
T ss_pred hcchhhhhHhhhhhHHHcCCCH----------HH------------------------HHHHHHHHHHHcCChhHhcCCh
Confidence 9999999999999987765421 11 1234678999999999888877
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
++ |||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.++.|.|+|+++ |..+++.++||||+
T Consensus 138 ~~-----LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vT-Hd~~~~~~~~drv~ 211 (240)
T d1g2912 138 RE-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVT-HDQVEAMTMGDRIA 211 (240)
T ss_dssp GG-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEE-SCHHHHHHHCSEEE
T ss_pred hh-----CCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEc-CCHHHHHHhCCEEE
Confidence 64 9999999999999999999999999999999999999999999999887799999876 45678999999999
Q ss_pred EEcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHH
Q 003389 416 LLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADF 451 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adf 451 (824)
+|++|+|++.|+++++. ..|.+.-+++|
T Consensus 212 vm~~G~iv~~G~~~el~--------~~P~~~~~~~f 239 (240)
T d1g2912 212 VMNRGVLQQVGSPDEVY--------DKPANTFVAGF 239 (240)
T ss_dssp EEETTEEEEEECHHHHH--------HSCSBHHHHHH
T ss_pred EEECCEEEEEcCHHHHH--------hCCCCHHHHHh
Confidence 99999999999999985 34655545555
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-49 Score=413.25 Aligned_cols=205 Identities=25% Similarity=0.321 Sum_probs=182.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC------CceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~~i~yv~Q~d~~~ 257 (824)
.++|+||||+|++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++..... ++.+|||+|++.++
T Consensus 18 ~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~ 94 (240)
T d3dhwc1 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLL 94 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCC
T ss_pred EEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcccc---CCceEEcCeEeeeCChhhhhhhhccccccccccccC
Confidence 46899999999999999999999999999999999999997 9999999999875442 25699999999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||+||+.|+++.++... . +...+++++|+.+||++.+|..++
T Consensus 95 ~~~tv~eni~~~l~~~~~~~--------------------~--------------~~~~~v~~~L~~vgL~~~~~~~~~- 139 (240)
T d3dhwc1 95 SSRTVFGNVALPLELDNTPK--------------------D--------------EVKRRVTELLSLVGLGDKHDSYPS- 139 (240)
T ss_dssp TTSBHHHHHHHHHHTTTCCT--------------------T--------------HHHHHHHHHHHHHSTTTTTSSCBS-
T ss_pred CCccHHHHHHHHHHHcCCCH--------------------H--------------HHHHHHHHHHHHcCCchhhhCChh-
Confidence 99999999999987665421 0 112346789999999998887776
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.++.|.|+|+++ |+..++..+||||++|
T Consensus 140 ----~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vT-Hdl~~~~~~~dri~vl 214 (240)
T d3dhwc1 140 ----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLIT-HEMDVVKRICDCVAVI 214 (240)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEB-SCHHHHHHHCSEEEEE
T ss_pred ----hCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEc-CCHHHHHHhCCEEEEE
Confidence 49999999999999999999999999999999999999999999999887789999876 5566899999999999
Q ss_pred cCCeEEEecChhhH
Q 003389 418 SEGQIVYQGPRDNV 431 (824)
Q Consensus 418 ~~G~iv~~G~~~~~ 431 (824)
++|+|++.|+++++
T Consensus 215 ~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 215 SNGELIEQDTVSEV 228 (240)
T ss_dssp ETTEEEEEEETTTT
T ss_pred ECCEEEEECCHHHH
Confidence 99999999999987
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.4e-47 Score=393.71 Aligned_cols=204 Identities=21% Similarity=0.236 Sum_probs=174.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCC-------ceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ-------RTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~-------~~i~yv~Q~d~~ 256 (824)
..+|+||||+|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.....+ +.+|||+|++.+
T Consensus 18 ~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l 94 (230)
T d1l2ta_ 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (230)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCC---cceeEECCEEcCcCChhhcchhhcceEEEEecchhh
Confidence 45899999999999999999999999999999999999997 99999999998765432 469999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc-cccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMV 335 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~v 335 (824)
+|.+||+||+.++...+..+.. +.+ +....+.++|+.+||.+ .++..+
T Consensus 95 ~~~~tv~eni~~~~~~~~~~~~--------------------~~~-----------~~~~~~~~~l~~~~L~~~~~~~~p 143 (230)
T d1l2ta_ 95 IPLLTALENVELPLIFKYRGAM--------------------SGE-----------ERRKRALECLKMAELEERFANHKP 143 (230)
T ss_dssp CTTSCHHHHHHHHHHTCCSSCC--------------------CHH-----------HHHHHHHHHHHHTTCCGGGTTCCG
T ss_pred CcCccHHHHHhHHHHHhccCCC--------------------CHH-----------HHHHHHHHHHHhhchhhhhhcCCh
Confidence 9999999999998765432210 000 01123566889999976 467666
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
. .|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.++.|+|+|+++|++ .+ .++||||+
T Consensus 144 ~-----~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~-a~~~drv~ 216 (230)
T d1l2ta_ 144 N-----QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-NV-ARFGERII 216 (230)
T ss_dssp G-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH-HH-HTTSSEEE
T ss_pred h-----hCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCH-HH-HHhCCEEE
Confidence 5 49999999999999999999999999999999999999999999999987899999988764 44 48999999
Q ss_pred EEcCCeEEEecCh
Q 003389 416 LLSEGQIVYQGPR 428 (824)
Q Consensus 416 lL~~G~iv~~G~~ 428 (824)
+|++|+|+++|+.
T Consensus 217 ~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 217 YLKDGEVEREEKL 229 (230)
T ss_dssp EEETTEEEEEEEC
T ss_pred EEECCEEEEeccC
Confidence 9999999999864
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1e-46 Score=390.07 Aligned_cols=210 Identities=24% Similarity=0.368 Sum_probs=182.0
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCHHHHHH
Q 003389 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLD 267 (824)
Q Consensus 189 ~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV~E~L~ 267 (824)
||||+++ +|+++|+|||||||||||++|+|+++|+ +|+|.+||+++....+ ++.+|||+|++.++|++||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhh
Confidence 8999995 6899999999999999999999999997 9999999999987654 467999999999999999999999
Q ss_pred HhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHH
Q 003389 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (824)
Q Consensus 268 f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGq 347 (824)
|+++.. . +.+ .+.+++++++.+||.+..|..+.+ |||||
T Consensus 93 ~~l~~~--~----------~~~------------------------~~~~v~~~l~~~gl~~~~~~~~~~-----LSGG~ 131 (240)
T d2onka1 93 YGLRNV--E----------RVE------------------------RDRRVREMAEKLGIAHLLDRKPAR-----LSGGE 131 (240)
T ss_dssp TTCTTS--C----------HHH------------------------HHHHHHHHHHTTTCTTTTTCCGGG-----SCHHH
T ss_pred hhhccc--C----------HHH------------------------HHHHHHHHHHhcCcHhhhhCChhh-----CCHHH
Confidence 975321 1 111 122467899999999988887764 99999
Q ss_pred HHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecC
Q 003389 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGP 427 (824)
Q Consensus 348 rqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~ 427 (824)
||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.|.|+|+++| ...++.++||||++|++|++++.|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtH-d~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH-DLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEES-CHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeC-CHHHHHHhCCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999999998877889888765 5668999999999999999999999
Q ss_pred hhhHHHHHHHcCCCCCCCCCHHHHHH
Q 003389 428 RDNVLEFFEHMGFKCPERKGVADFLQ 453 (824)
Q Consensus 428 ~~~~~~~f~~~G~~~p~~~~~adfl~ 453 (824)
++++.+ |+...++.|+.
T Consensus 211 ~~el~~---------~~~~~v~~fl~ 227 (240)
T d2onka1 211 LKELFS---------AKNGEVAEFLS 227 (240)
T ss_dssp HHHHHH---------SCCSSHHHHGG
T ss_pred HHHHhc---------CCCHHHHHHhC
Confidence 999853 33455777764
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-45 Score=385.04 Aligned_cols=209 Identities=24% Similarity=0.398 Sum_probs=172.6
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~ 259 (824)
.+.+|+||||+|++||.+||+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+|++.++ .
T Consensus 15 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~ 90 (241)
T d2pmka1 15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL-N 90 (241)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCT-T
T ss_pred CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCC---CCEEEECCEEecccchhhhhceEEEEecccccC-C
Confidence 356999999999999999999999999999999999999997 9999999999977643 47899999998766 5
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
.||+||+.++.. +.+.+.+.+++...+... ....++...+|.+|+ .
T Consensus 91 ~Ti~eNi~~~~~-------------------------~~~~~~~~~~~~~~~~~~--------~i~~~~~~~~t~i~~-~ 136 (241)
T d2pmka1 91 RSIIDNISLANP-------------------------GMSVEKVIYAAKLAGAHD--------FISELREGYNTIVGE-Q 136 (241)
T ss_dssp SBHHHHHCTTST-------------------------TCCHHHHHHHHHHHTCHH--------HHTTSTTGGGSBCST-T
T ss_pred ccccccccccCc-------------------------cccHHHHHHHHHHHhhHH--------HHHhhhcchhhhcCC-C
Confidence 699999988532 111222222222221111 133567788999985 4
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
+..|||||||||+|||||+.+|++|+||||||+||+.++.+|++.|+++.+ ++|+|+++|++. ..+.||+|++|++
T Consensus 137 g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~--~~~~~D~i~vl~~ 212 (241)
T d2pmka1 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLS--TVKNADRIIVMEK 212 (241)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEECSSGG--GGTTSSEEEEEET
T ss_pred CCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC--CCEEEEEECCHH--HHHhCCEEEEEEC
Confidence 567999999999999999999999999999999999999999999999974 789999877653 4578999999999
Q ss_pred CeEEEecChhhHHH
Q 003389 420 GQIVYQGPRDNVLE 433 (824)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (824)
|+|+++|+++++++
T Consensus 213 G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 213 GKIVEQGKHKELLS 226 (241)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999864
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.6e-46 Score=387.28 Aligned_cols=222 Identities=24% Similarity=0.317 Sum_probs=190.6
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGE 259 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~ 259 (824)
+++++|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.+.. .++.++||||++.+++.
T Consensus 13 g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ 89 (238)
T d1vpla_ 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRN 89 (238)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTT
T ss_pred CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECcEecccChHHHHhhEeEeeeccccCCC
Confidence 4577999999999999999999999999999999999999997 999999999876532 24679999999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||.||+.|.+.+++... .+ ....++.+++.++|.+..+.++++
T Consensus 90 ltv~e~l~~~~~~~~~~~--------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~~-- 133 (238)
T d1vpla_ 90 MQGIEYLRFVAGFYASSS--------------------SE--------------IEEMVERATEIAGLGEKIKDRVST-- 133 (238)
T ss_dssp SBHHHHHHHHHHHHCCCH--------------------HH--------------HHHHHHHHHHHHCCGGGGGSBGGG--
T ss_pred ccHHHHHHHHHHhcCCCH--------------------HH--------------HHHHHHHHHHhCCCHHHHhhhhhh--
Confidence 999999999876654321 00 112356788999999999888875
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
|||||||||+||++|+.+|++|||||||+|||+.++.+|.+.|+++++ .|+|||+++| ...++..+||||++|++
T Consensus 134 ---lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g~tii~~tH-~l~~~~~~~drv~vl~~ 208 (238)
T d1vpla_ 134 ---YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSH-NMLEVEFLCDRIALIHN 208 (238)
T ss_dssp ---CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEEC-CHHHHTTTCSEEEEEET
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeC-CHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999986 4899999765 56689999999999999
Q ss_pred CeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHh
Q 003389 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (824)
Q Consensus 420 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 455 (824)
|++++.|+++++.+-+ ..++..+++.++
T Consensus 209 G~iv~~g~~~el~~~~--------~~~~~~~~f~~~ 236 (238)
T d1vpla_ 209 GTIVETGTVEELKERY--------KAQNIEEVFEEV 236 (238)
T ss_dssp TEEEEEEEHHHHHHHT--------TCSSHHHHHHHH
T ss_pred CEEEEEcCHHHHHhcc--------CCchHHHHHHHh
Confidence 9999999999997532 344666666554
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3.3e-46 Score=389.04 Aligned_cols=206 Identities=23% Similarity=0.341 Sum_probs=175.9
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~ 257 (824)
+++++|+||||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++..... +..++|++|+..++
T Consensus 17 g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~ 93 (240)
T d1ji0a_ 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIF 93 (240)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCC
T ss_pred CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEecccccccccHHHHHHhcccccCcccccC
Confidence 3567999999999999999999999999999999999999997 9999999999876433 23489999999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc-CCCcccccccc
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMVG 336 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-gL~~~~dt~vg 336 (824)
+.+||+||+.+.+....... . .....+.+++.+ +|.+..++.++
T Consensus 94 ~~ltv~en~~~~~~~~~~~~---------------------~--------------~~~~~~~~~~~~~~l~~~~~~~~~ 138 (240)
T d1ji0a_ 94 PELTVYENLMMGAYNRKDKE---------------------G--------------IKRDLEWIFSLFPRLKERLKQLGG 138 (240)
T ss_dssp TTSBHHHHHHGGGTTCCCSS---------------------H--------------HHHHHHHHHHHCHHHHTTTTSBSS
T ss_pred CcccHHHHHHHHHHhcCCHH---------------------H--------------HHHHHHHHHHHhhChHHHHhCchh
Confidence 99999999988764432110 0 011234455555 67778887776
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+ |||||||||+|||||+.+|++|||||||+|||+.++.+|.+.|++++++ |+|+|++. |...++.++||||++
T Consensus 139 ~-----LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~-g~til~~t-H~l~~~~~~~drv~v 211 (240)
T d1ji0a_ 139 T-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE-GTTILLVE-QNALGALKVAHYGYV 211 (240)
T ss_dssp S-----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCCEEEEE-SCHHHHHHHCSEEEE
T ss_pred h-----CCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEe-CCHHHHHHhCCEEEE
Confidence 5 9999999999999999999999999999999999999999999999874 88888875 556789999999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|++++.|+++++.
T Consensus 212 l~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 212 LETGQIVLEGKASELL 227 (240)
T ss_dssp EETTEEEEEEEHHHHH
T ss_pred EECCEEEEEcCHHHHh
Confidence 9999999999999875
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6e-46 Score=390.59 Aligned_cols=219 Identities=23% Similarity=0.316 Sum_probs=182.6
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----------------Cce
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----------------QRT 246 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----------------~~~ 246 (824)
+.++|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++....+ ++.
T Consensus 14 ~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ 90 (258)
T d1b0ua_ 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTR 90 (258)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHH
T ss_pred CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCC---CCCEEECCEEeccCCccchhcccccHhHHHHHhcc
Confidence 467999999999999999999999999999999999999997 9999999999854321 256
Q ss_pred EEEEecCCCCCCCCCHHHHHHHhhh-hcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc
Q 003389 247 CAYISQHDLHHGEMTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL 325 (824)
Q Consensus 247 i~yv~Q~d~~~~~lTV~E~L~f~a~-~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l 325 (824)
+|||+|++.+++.+||.||+.++.. ..+.. +.+ ....+.++++.+
T Consensus 91 ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~ 136 (258)
T d1b0ua_ 91 LTMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------KHD------------------------ARERALKYLAKV 136 (258)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------HHH------------------------HHHHHHHHHHHT
T ss_pred eEEEEechhhccchhcchhhhhhHHHhcCCC----------HHH------------------------HHHHHHHHHHHc
Confidence 9999999999999999999998742 22211 000 112456789999
Q ss_pred CCCcc-ccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCc
Q 003389 326 GLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (824)
Q Consensus 326 gL~~~-~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~ 404 (824)
||.+. .+..++ .|||||||||+|||+|+.+|++|||||||+|||+.++.+|++.|+++++ .|.|+|+++ |+.
T Consensus 137 ~l~~~~~~~~p~-----~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~til~vt-Hdl 209 (258)
T d1b0ua_ 137 GIDERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVT-HEM 209 (258)
T ss_dssp TCCHHHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEEEC-SCH
T ss_pred CCchhhhccCcc-----cccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcc-cCCceEEEe-CCH
Confidence 99764 455555 5999999999999999999999999999999999999999999999987 488888765 667
Q ss_pred hhHHhhcCeEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHH
Q 003389 405 PETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQ 453 (824)
Q Consensus 405 ~e~~~lfD~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 453 (824)
.++..+||||++|++|+|+++|+++++.. .|.+.-+++|+.
T Consensus 210 ~~~~~~adri~vm~~G~iv~~g~~~ev~~--------~P~~~~~~~ll~ 250 (258)
T d1b0ua_ 210 GFARHVSSHVIFLHQGKIEEEGDPEQVFG--------NPQSPRLQQFLK 250 (258)
T ss_dssp HHHHHHCSEEEEEETTEEEEEECHHHHHH--------SCCSHHHHHHHH
T ss_pred HHHHHhCCEEEEEECCEEEEEcCHHHHHh--------CCCCHHHHHHHh
Confidence 78999999999999999999999999853 465544556553
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.7e-46 Score=390.13 Aligned_cols=220 Identities=23% Similarity=0.328 Sum_probs=176.3
Q ss_pred hcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEE
Q 003389 173 LLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAY 249 (824)
Q Consensus 173 ~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~y 249 (824)
++++.++|.+.+++|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||++++.... ++.++|
T Consensus 4 ~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 4 ARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCC---CCEEEECCEEeccccHHHHHhheEE
Confidence 3444455555567999999999999999999999999999999999999997 9999999999876543 577999
Q ss_pred EecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc
Q 003389 250 ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (824)
Q Consensus 250 v~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (824)
|+|++.+++. ||+||+.++...... .+...++........ ....+++
T Consensus 81 v~Q~~~lf~~-ti~eNi~~~~~~~~~------------------------~~~~~~~~~~~~~~~--------~~~~~~~ 127 (242)
T d1mv5a_ 81 VSQDSAIMAG-TIRENLTYGLEGDYT------------------------DEDLWQVLDLAFARS--------FVENMPD 127 (242)
T ss_dssp ECCSSCCCCE-EHHHHTTSCTTSCSC------------------------HHHHHHHHHHHTCTT--------TTTSSTT
T ss_pred EccccccCCc-chhhheecccccccc------------------------hhhHHHHHHHHHhhh--------hhccCcc
Confidence 9999887765 999999876432110 111111111111100 1235667
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh
Q 003389 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (824)
Q Consensus 330 ~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~ 409 (824)
..+|.+|+. ...|||||||||+|||||+.+|+||+||||||+||+.++.+|++.|+++++ ++|+|++.|++ +...
T Consensus 128 ~~~~~i~~~-g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l--~~~~ 202 (242)
T d1mv5a_ 128 QLNTEVGER-GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRL--STIV 202 (242)
T ss_dssp GGGCEESTT-SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--TSEEEEECCSH--HHHH
T ss_pred cccccccCC-CCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC--CCEEEEEECCH--HHHH
Confidence 788999864 557999999999999999999999999999999999999999999999974 78999987764 3456
Q ss_pred hcCeEEEEcCCeEEEecChhhHHH
Q 003389 410 LFDDIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 410 lfD~iilL~~G~iv~~G~~~~~~~ 433 (824)
.||+|++|++|+|+++|+++++++
T Consensus 203 ~~D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 203 DADKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp HCSEEEEEETTEECCCSCHHHHHH
T ss_pred hCCEEEEEECCEEEEECCHHHHHh
Confidence 799999999999999999999874
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.2e-46 Score=391.01 Aligned_cols=221 Identities=24% Similarity=0.349 Sum_probs=183.2
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCC----ceEEEEecCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCAYISQHDLHH 257 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~----~~i~yv~Q~d~~~ 257 (824)
++.++|+||||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++....++ +.++|++|++.++
T Consensus 15 g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~ 91 (254)
T d1g6ha_ 15 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL 91 (254)
T ss_dssp TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGG
T ss_pred CCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCC---CcEEEECCEeccchhHHHHHHhcCCccCCccccC
Confidence 3567999999999999999999999999999999999999997 99999999999765542 3499999999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||.||+.++...++......+ . .......+. +....+..+++.+++.+..|+.+++
T Consensus 92 ~~ltv~enl~~~~~~~~~~~~~~~----~---~~~~~~~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~ 150 (254)
T d1g6ha_ 92 KEMTVLENLLIGEICPGESPLNSL----F---YKKWIPKEE--------------EMVEKAFKILEFLKLSHLYDRKAGE 150 (254)
T ss_dssp GGSBHHHHHHGGGTSTTSCHHHHH----H---HCSSCCCCH--------------HHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred CCCeeeeeeeehhhhccccchhhh----h---hhcccccHH--------------HHHHHHHHHHHhcCcchhccCchhh
Confidence 999999999998655432211000 0 000001111 1112456789999999999988875
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
|||||||||+|||+|+.+|++|||||||+|||+.++.+|.+.|+++++ .|+|+|++. |..+++.++||||++|
T Consensus 151 -----LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~vs-Hdl~~~~~~~Drv~vm 223 (254)
T d1g6ha_ 151 -----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIE-HRLDIVLNYIDHLYVM 223 (254)
T ss_dssp -----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEC-SCCSTTGGGCSEEEEE
T ss_pred -----CCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CcHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999976 588888865 5677899999999999
Q ss_pred cCCeEEEecChhhHHH
Q 003389 418 SEGQIVYQGPRDNVLE 433 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (824)
++|+++++|+++++.+
T Consensus 224 ~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 224 FNGQIIAEGRGEEEIK 239 (254)
T ss_dssp ETTEEEEEEESHHHHH
T ss_pred eCCEEEEEecHHHHhh
Confidence 9999999999987643
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-45 Score=385.11 Aligned_cols=212 Identities=23% Similarity=0.370 Sum_probs=173.9
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~ 259 (824)
++.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+|++.+++
T Consensus 26 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~- 101 (251)
T d1jj7a_ 26 DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG- 101 (251)
T ss_dssp TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-
T ss_pred CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC---cCEEEECCEecchhhhHHHHHHhhhccccccccC-
Confidence 356999999999999999999999999999999999999997 9999999999876544 477999999998775
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
.||+||+.|+..... ......++....+ ... ...+|++..++.+++ .
T Consensus 102 ~tv~eni~~g~~~~~------------------------~~~~~~~~~~~~~------~~~--~i~~l~~g~~~~i~~-~ 148 (251)
T d1jj7a_ 102 RSLQENIAYGLTQKP------------------------TMEEITAAAVKSG------AHS--FISGLPQGYDTEVDE-A 148 (251)
T ss_dssp SBHHHHHHCSCSSCC------------------------CHHHHHHHHHHHT------CHH--HHHTSTTGGGCBCCS-S
T ss_pred cchhhhhhhhhcccc------------------------hHHHHHHHHHHHH------HHH--HHHhccccchhhHhc-c
Confidence 599999998642211 0011111111110 011 234677788898874 5
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
+..|||||||||+|||||+.+|++|+||||||+||+.++.+|++.|+++.+..++|+|+++|+. ++.+.||+|++|++
T Consensus 149 ~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l--~~~~~aDrI~vl~~ 226 (251)
T d1jj7a_ 149 GSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL--SLVEQADHILFLEG 226 (251)
T ss_dssp CSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH--HHHHTCSEEEEEET
T ss_pred CccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCH--HHHHhCCEEEEEEC
Confidence 6679999999999999999999999999999999999999999999999876688999987764 35578999999999
Q ss_pred CeEEEecChhhHHH
Q 003389 420 GQIVYQGPRDNVLE 433 (824)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (824)
|+|+++|+++++++
T Consensus 227 G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 227 GAIREGGTHQQLME 240 (251)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999864
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3.4e-45 Score=383.90 Aligned_cols=208 Identities=24% Similarity=0.390 Sum_probs=173.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
.++|+|||++|++||.++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+|++.++ ..
T Consensus 31 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~ 106 (255)
T d2hyda1 31 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF-SD 106 (255)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC-SS
T ss_pred CcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcc---ccccccCCEEcccCCHHHhhheeeeeeccccCC-CC
Confidence 56999999999999999999999999999999999999997 9999999999877543 47899999988776 46
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+|||.|+.. +...+++.+++...+... ....|++..||.+|+ ..
T Consensus 107 Ti~eNi~~g~~-------------------------~~~~~~~~~al~~~~l~~--------~i~~lp~gl~t~i~~-~g 152 (255)
T d2hyda1 107 TVKENILLGRP-------------------------TATDEEVVEAAKMANAHD--------FIMNLPQGYDTEVGE-RG 152 (255)
T ss_dssp BHHHHHGGGCS-------------------------SCCHHHHHHHHHHTTCHH--------HHHTSTTGGGCBCCG-GG
T ss_pred CHHHHHhccCc-------------------------CCCHHHHHHHHHHhCCHH--------HHHhccccccchhcC-CC
Confidence 99999988621 111223333333222111 133677888999986 45
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
..|||||||||+|||||+.+|++|+||||||+||+.++..|++.|+++.+ ++|+|+++|++. ....||+|++|++|
T Consensus 153 ~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~TvI~itH~~~--~~~~~D~ii~l~~G 228 (255)
T d2hyda1 153 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLS--TITHADKIVVIENG 228 (255)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSGG--GTTTCSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH--HHHhCCEEEEEECC
Confidence 67999999999999999999999999999999999999999999999874 789998877653 55789999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
+|++.|+++++++
T Consensus 229 ~iv~~G~~~eLl~ 241 (255)
T d2hyda1 229 HIVETGTHRELIA 241 (255)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999874
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.2e-44 Score=375.12 Aligned_cols=209 Identities=23% Similarity=0.363 Sum_probs=170.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
.++|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+|++.++. .
T Consensus 28 ~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ 103 (253)
T d3b60a1 28 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 103 (253)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCC---ccEEEECCcccchhhhhhhhheEEEEeeccccCC-c
Confidence 46999999999999999999999999999999999999997 9999999999877543 467999999887665 5
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
|+++|+.++... . .+.+++.+++...+. .+.++ .|++..+|.+|+ .+
T Consensus 104 ti~~n~~~~~~~-~-----------------------~~~~~i~~a~~~~~l------~~~i~--~l~~gl~t~~~~-~~ 150 (253)
T d3b60a1 104 TVANNIAYARTE-E-----------------------YSREQIEEAARMAYA------MDFIN--KMDNGLDTIIGE-NG 150 (253)
T ss_dssp BHHHHHHTTTTS-C-----------------------CCHHHHHHHHHTTTC------HHHHH--HSTTGGGSBCCT-TS
T ss_pred chhhhhhhcCcc-c-----------------------CCHHHHHHHHHHHhH------HHHHH--hccccchhhhcC-CC
Confidence 999999886211 0 111222222222211 11222 355677888885 46
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
..|||||||||+|||||+.+|++|+||||||+||+.++..|++.|+++.+ ++|+|+++|+. ++.+.||+|++|++|
T Consensus 151 ~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l--~~~~~~D~v~vl~~G 226 (253)
T d3b60a1 151 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRL--STIEQADEIVVVEDG 226 (253)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCG--GGTTTCSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCH--HHHHhCCEEEEEECC
Confidence 77999999999999999999999999999999999999999999999974 78999887665 345789999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
+|+++|+++++++
T Consensus 227 ~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 227 IIVERGTHSELLA 239 (253)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999874
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2e-40 Score=352.89 Aligned_cols=199 Identities=22% Similarity=0.289 Sum_probs=160.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
+++||+|||++|++||++||+||||||||||+++|+|+++|+ +|+|.++|+ ++|++|++.+++. ||
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~----------i~~v~Q~~~l~~~-tv 113 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR----------VSFCSQFSWIMPG-TI 113 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCSC----------EEEECSSCCCCSE-EH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC---CcEEEECCE----------EEEEeccccccCc-ee
Confidence 357999999999999999999999999999999999999997 999999983 8999999887764 99
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.|+..... .......+. . ........+.+..++.+|+ ....
T Consensus 114 ~eni~~~~~~~~-----------------------~~~~~~~~~---~--------~~~~~i~~l~~~~~~~~~~-~~~~ 158 (281)
T d1r0wa_ 114 KENIIFGVSYDE-----------------------YRYKSVVKA---C--------QLQQDITKFAEQDNTVLGE-GGVT 158 (281)
T ss_dssp HHHHTTTSCCCH-----------------------HHHHHHHHH---T--------TCHHHHTTSTTGGGCEECT-TCTT
T ss_pred eccccccccccc-----------------------hHHHHHHHH---H--------HhHHHHHhchhhhhhhhhh-hccC
Confidence 999988642210 000111110 0 1112355677778888875 4556
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+|||||+.+|+||+|||||+|||+.+..+|++.+.+... .++|+|++.|+. +..+.||+|++|++|+|
T Consensus 159 LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~-~~~tvi~itH~~--~~l~~aDrI~vl~~G~i 235 (281)
T d1r0wa_ 159 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRILVTSKM--EHLRKADKILILHQGSS 235 (281)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT-TTSEEEEECSCH--HHHHTCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEEechH--HHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999876433322 478888877664 45688999999999999
Q ss_pred EEecChhhHHH
Q 003389 423 VYQGPRDNVLE 433 (824)
Q Consensus 423 v~~G~~~~~~~ 433 (824)
+++|+++++..
T Consensus 236 ~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 236 YFYGTFSELQS 246 (281)
T ss_dssp EEEECHHHHHH
T ss_pred EEECCHHHHhc
Confidence 99999999864
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.3e-40 Score=340.48 Aligned_cols=198 Identities=25% Similarity=0.363 Sum_probs=169.3
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCC---ceEEEEecCCCCCCCCC
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMT 261 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~---~~i~yv~Q~d~~~~~lT 261 (824)
..|+||||+|++||+++|+||||||||||+++|+|+. ++ +|+|.++|+++...... ...+|++|+.......+
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CC---ceEEEECCEECCcCCHHHHHhhceeeeccccCCcccc
Confidence 4799999999999999999999999999999999975 44 89999999998765432 45799999987777789
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|.+++.+...-+ .....++++++.++|++..++.+.+
T Consensus 89 v~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~---- 125 (231)
T d1l7vc_ 89 VWHYLTLHQHDK---------------------------------------TRTELLNDVAGALALDDKLGRSTNQ---- 125 (231)
T ss_dssp HHHHHHHHCSCT---------------------------------------TCHHHHHHHHHHTTCTTTTTSBGGG----
T ss_pred HHHHhhhccchh---------------------------------------hHHHHHHHHHHhcCCHhHhCcChhh----
Confidence 999987753210 0112356688899999888877764
Q ss_pred CCCHHHHHHHHHHHHHHc-------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 342 GISGGQKKRVTTGEMLVG-------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~-------~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
|||||||||+||++|+. +|++|+|||||+|||+.++..+.+.|+++++ .|.|+|++. |...++.++||||
T Consensus 126 -LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~vt-Hdl~~~~~~~dri 202 (231)
T d1l7vc_ 126 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVMSS-HDLNHTLRHAHRA 202 (231)
T ss_dssp -CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEECC-CCHHHHHHHCSBC
T ss_pred -cCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe-CCHHHHHHHCCEE
Confidence 99999999999999996 6799999999999999999999999999976 588888875 4567899999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 003389 415 ILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (824)
++|++|+++++|+++++.
T Consensus 203 ~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 203 WLLKGGKMLASGRREEVL 220 (231)
T ss_dssp CBEETTEECCCSBHHHHS
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999999874
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.7e-38 Score=322.17 Aligned_cols=184 Identities=17% Similarity=0.261 Sum_probs=152.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
++||+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+. +..++|++|+..++..+||+
T Consensus 14 ~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~ 88 (200)
T d1sgwa_ 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVE 88 (200)
T ss_dssp SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHH
T ss_pred CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccC---CCEEEECCEehhHh--cCcEEEEeecccCCCCcCHH
Confidence 46999999999999999999999999999999999999997 99999999998753 56799999999999999999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
|++.+.+..++... +.+ .+.+.++.+++.+. +..++ .|
T Consensus 89 ~~l~~~~~~~~~~~---------------------~~~---------------~~~~~l~~~~~~~~-~~~~~-----~L 126 (200)
T d1sgwa_ 89 DYLKAVASLYGVKV---------------------NKN---------------EIMDALESVEVLDL-KKKLG-----EL 126 (200)
T ss_dssp HHHHHHHHHTTCCC---------------------CHH---------------HHHHHHHHTTCCCT-TSBGG-----GS
T ss_pred HHHHHHHHhcCCcc---------------------CHH---------------HHHHHHHHcCCccc-ccccC-----cC
Confidence 99998776554311 001 12345667776543 34454 49
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++.++.+ ++|++.||.. .+||.+.+|++
T Consensus 127 SgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~-~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 127 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG-IVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHS-EEEEEESSCC----TTSSEEEEGGG
T ss_pred CCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCC-EEEEEEechh----hhcchhhheee
Confidence 99999999999999999999999999999999999999999999987644 5555555543 57999999865
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.50 E-value=1.9e-15 Score=146.71 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
+|+|+++|.++++++..+|++|++|||... ......+.+.|.++.+..+.+++++.|+. +...++|++..+.+|++
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~i 157 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEIRRLPGAVL 157 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHHHTCTTSEEEEECCSS--CCSHHHHHHHTCTTCEE
T ss_pred hhhhhhHHHHHHHHHhcCCCceeecCCCcc--chhhHHHHHHHHHHhccCCCEEEEEEccH--HHHHhhceEEEEeCCEE
Confidence 789999999999999999999999998443 33445666777776665577888776654 45678999999999999
Q ss_pred EEecC
Q 003389 423 VYQGP 427 (824)
Q Consensus 423 v~~G~ 427 (824)
+.-++
T Consensus 158 ~~v~~ 162 (178)
T d1ye8a1 158 IELTP 162 (178)
T ss_dssp EECCT
T ss_pred EEECC
Confidence 86543
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.75 E-value=1.5e-08 Score=105.95 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=63.0
Q ss_pred CCCCCHHHHHHHHHHHHH----HcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 340 RRGISGGQKKRVTTGEML----VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aL----v~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
...+|+|||+...++..+ ..+++++++|||-++||+.....+.+.|++.++ +.=+|+++|.| ++.+.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitTHsp--~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITHNK--IVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECCCT--TGGGGCSEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCH--HHHHhcccEE
Confidence 456999999998887543 456789999999999999999999999999875 45677777765 6889999996
Q ss_pred E--EcCC
Q 003389 416 L--LSEG 420 (824)
Q Consensus 416 l--L~~G 420 (824)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEeCC
Confidence 6 4556
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.26 E-value=6.4e-07 Score=96.75 Aligned_cols=74 Identities=19% Similarity=0.367 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHHHHHHH----HcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 341 RGISGGQKKRVTTGEML----VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aL----v~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
..+|||||.++++|-.+ +.++++++||||+++||+.....+.+.|++++. .+.-+|+++|+| ++.+.+|+++.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~iTH~~--~~~~~ad~~~~ 407 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKN--TMFEKSDALVG 407 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCH--HHHTTCSEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeCCH--HHHHhcccEEE
Confidence 55899999998887443 457789999999999999999999999998864 344577777765 58899999876
Q ss_pred E
Q 003389 417 L 417 (824)
Q Consensus 417 L 417 (824)
+
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.72 E-value=3e-05 Score=78.04 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=34.9
Q ss_pred HHcCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEEccC
Q 003389 357 LVGTANVLYMDEISTGLDSSTTFQICKF-LKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 357 Lv~~p~iLlLDEPTsGLDs~t~~~I~~~-L~~l~~~~~~tvIisi~q~ 403 (824)
-+++..++++||+.+|=|+.....+... ++.+....+..++++.|.+
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchH
Confidence 3455679999999999999999888655 6667655456667766544
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.71 E-value=6.3e-05 Score=75.12 Aligned_cols=55 Identities=13% Similarity=0.054 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEEccC
Q 003389 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF-LKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 348 rqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~-L~~l~~~~~~tvIisi~q~ 403 (824)
-+|+.-..-.+++..++++||+.+|=|+.....+... ++.+.+ .+..+++++|++
T Consensus 102 l~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tTH~~ 157 (224)
T d1ewqa2 102 MEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYF 157 (224)
T ss_dssp HHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCH
T ss_pred HHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhh-cCcceEEeeech
Confidence 3333333333456689999999999999887766644 444544 467778877764
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.42 E-value=0.0019 Score=65.07 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=30.6
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG 219 (824)
+.+-|+++.+=+.||+++.|.|+||+|||||+.-|+-
T Consensus 21 G~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp SCTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CchhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3445676655589999999999999999999888874
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.25 E-value=0.0023 Score=62.96 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=42.6
Q ss_pred cCCcEeEEeCCCC---CCCHHHHHHHHHHHHHHHHhCCcEEEEEEccC---------chhHHhhcCeEEEEc
Q 003389 359 GTANVLYMDEIST---GLDSSTTFQICKFLKQMVHILDVTMIVALLQP---------APETYDLFDDIILLS 418 (824)
Q Consensus 359 ~~p~iLlLDEPTs---GLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~---------~~e~~~lfD~iilL~ 418 (824)
.+|++++.|-.+. +.+.......+..|.+++++.+.+++++.|.+ ...+..++|-|+.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 4789999996544 45666667777777777887888888876542 123456789998885
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=0.0017 Score=65.17 Aligned_cols=47 Identities=6% Similarity=0.097 Sum_probs=34.2
Q ss_pred HHcCCcEeEEeCCCC---C--CCHHHHHHHHHHHHHHHHhCCcEEEEEEccCc
Q 003389 357 LVGTANVLYMDEIST---G--LDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (824)
Q Consensus 357 Lv~~p~iLlLDEPTs---G--LDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~ 404 (824)
-..+|+++++|--++ + -|.....++++.|+++++..+++++++ ||+.
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v-~H~~ 180 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFL-HHAS 180 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEE-EEC-
T ss_pred hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehh-hhcc
Confidence 346899999996543 1 266677789999999998778887775 5543
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.08 E-value=0.0071 Score=58.29 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=38.7
Q ss_pred CCcEeEEeCCCCCC----CHHHHHHHHHHHHHHHHhCCcEEEEEEccCch--------hHHhhcCeEEEEc
Q 003389 360 TANVLYMDEISTGL----DSSTTFQICKFLKQMVHILDVTMIVALLQPAP--------ETYDLFDDIILLS 418 (824)
Q Consensus 360 ~p~iLlLDEPTsGL----Ds~t~~~I~~~L~~l~~~~~~tvIisi~q~~~--------e~~~lfD~iilL~ 418 (824)
+|++++.|--+.=. +......++..+.+.++..+.|++++.|+... .....+|.++.+.
T Consensus 125 ~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 125 RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred ccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence 78999999766532 33444455555556666678898887765532 3445688888774
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.0001 Score=68.40 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
+++|+|++|||||||++.|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 7899999999999999999977654
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.05 E-value=0.00014 Score=67.90 Aligned_cols=27 Identities=44% Similarity=0.636 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.|++++|.|||||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999997653
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.90 E-value=0.00016 Score=67.77 Aligned_cols=39 Identities=26% Similarity=0.298 Sum_probs=28.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~ 236 (824)
++++|+|++|||||||++.|...+......-|.|..+++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccC
Confidence 478999999999999999998877653223455544544
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.90 E-value=0.00023 Score=70.81 Aligned_cols=34 Identities=21% Similarity=0.420 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEe
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT 232 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~ 232 (824)
+|+.++++|+||+|||||+|.|.|...-. .|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhh---ccCcc
Confidence 47899999999999999999999875543 66664
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.00017 Score=67.10 Aligned_cols=28 Identities=25% Similarity=0.479 Sum_probs=25.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+.+.++.|+|||||||||+.+.|+..+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999998763
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=2.2e-05 Score=74.58 Aligned_cols=35 Identities=31% Similarity=0.235 Sum_probs=29.4
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-.++.++.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 356777777776 99999999999999999997554
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=9.2e-05 Score=69.22 Aligned_cols=27 Identities=44% Similarity=0.698 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLGKD 224 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~~~ 224 (824)
+.+.|.||||+|||||++.++..+...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 458999999999999999999988653
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.84 E-value=0.00021 Score=68.11 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
|+++.|+||||||||||.+.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987654
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.82 E-value=0.00027 Score=65.78 Aligned_cols=28 Identities=25% Similarity=0.250 Sum_probs=25.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
++|.++.|+|+|||||||+.++|+-++.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999997764
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.73 E-value=0.00027 Score=65.94 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+.++|.||+|||||||.+.|+..+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999997753
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.57 E-value=0.00044 Score=63.80 Aligned_cols=24 Identities=38% Similarity=0.700 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++.|.|||||||||+.+.|+..+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999765
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.52 E-value=0.00058 Score=63.46 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++|-.++|.|||||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 356678999999999999999999664
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.52 E-value=0.00059 Score=62.17 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG 219 (824)
+++.|.||||||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999998753
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.52 E-value=0.00052 Score=63.63 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.+++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999998764
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.45 E-value=0.00026 Score=70.58 Aligned_cols=34 Identities=29% Similarity=0.592 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEe
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT 232 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~ 232 (824)
+|+.++++|+||+|||||+|+|.|...-. .|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhh---hcccc
Confidence 47788999999999999999999875443 67665
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.34 E-value=0.00074 Score=62.43 Aligned_cols=22 Identities=59% Similarity=0.730 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++|+|||||||||+.+.|+-.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999665
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.0011 Score=62.93 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=26.9
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
|=+++|+++.|.||||||||||+.-++...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 679999999999999999999998887543
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.27 E-value=0.00098 Score=62.14 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
.++++|.|++||||||+.+.|+-.+..
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999977643
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.001 Score=65.01 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.|.++.|+||||||||||.+.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999987654
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.0007 Score=64.11 Aligned_cols=27 Identities=41% Similarity=0.428 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.|.++.|.|+|||||||+.+.|+-.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999997664
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.20 E-value=0.00095 Score=63.84 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||+|.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999863
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.0012 Score=60.02 Aligned_cols=23 Identities=48% Similarity=0.687 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+.|+||+||||||+-+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999999765
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.10 E-value=0.0013 Score=69.94 Aligned_cols=25 Identities=36% Similarity=0.678 Sum_probs=22.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHh
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALA 218 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~La 218 (824)
+.++.+++|+|||||||||+|.+|+
T Consensus 22 f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 22 FGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3556699999999999999999985
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.07 E-value=0.0014 Score=62.56 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+++|+|||||||||+.+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998654
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.06 E-value=0.00099 Score=63.87 Aligned_cols=28 Identities=32% Similarity=0.568 Sum_probs=24.3
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++.+.++.|+|||||||||+.+.|+-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999998654
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.00 E-value=0.001 Score=63.01 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999875
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.96 E-value=0.0015 Score=63.99 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+++|+||+|||||||++.|...+
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 68999999999999999997544
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.94 E-value=0.0015 Score=62.55 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-.++.|+|||||||||+.+.|+-.+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999765
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.91 E-value=0.0016 Score=61.43 Aligned_cols=24 Identities=33% Similarity=0.302 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
++||-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999986654
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.91 E-value=0.0025 Score=60.06 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||+++|.|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999853
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.90 E-value=0.0019 Score=61.39 Aligned_cols=27 Identities=44% Similarity=0.630 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++|-.+.|+|||||||||+-+.|+-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 356677899999999999999999554
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.87 E-value=0.0019 Score=60.24 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.87 E-value=0.0015 Score=61.34 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||+|.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999863
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.87 E-value=0.0017 Score=64.67 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
...++|.||||||||||.++|++.+.
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35689999999999999999998764
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.78 E-value=0.002 Score=61.74 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|||||||++.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.73 E-value=0.0021 Score=60.27 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.|+|||||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998765
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.68 E-value=0.0022 Score=58.06 Aligned_cols=23 Identities=43% Similarity=0.508 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36799999999999999999753
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.68 E-value=0.0025 Score=60.67 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++.|+|||||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998654
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.62 E-value=0.0024 Score=57.98 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++|+|++|+|||||++.|.+-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999764
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.60 E-value=0.0026 Score=59.18 Aligned_cols=23 Identities=43% Similarity=0.599 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+.|+|++||||||+.+.||-.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57889999999999999997763
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.60 E-value=0.0019 Score=60.01 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.|-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.59 E-value=0.0022 Score=59.97 Aligned_cols=26 Identities=27% Similarity=0.589 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
+++.|.|++||||||+.+.|+.++..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46788999999999999999988753
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.58 E-value=0.0028 Score=59.11 Aligned_cols=22 Identities=36% Similarity=0.702 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
.++|+|.+|+|||||+|+|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999975
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.58 E-value=0.0024 Score=60.70 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+.|+||+||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998665
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.57 E-value=0.0019 Score=60.87 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+||+|++|+|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998753
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.57 E-value=0.0026 Score=60.60 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
-+.|+||||||||||++.|+...+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred eEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999976543
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.53 E-value=0.0031 Score=59.53 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHh
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALA 218 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~La 218 (824)
++-+++.++|+|||||||+.+.|+
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 455799999999999999999885
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.48 E-value=0.0066 Score=63.28 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=29.5
Q ss_pred eeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC
Q 003389 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD 224 (824)
Q Consensus 190 vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~ 224 (824)
+...++.|.-++|.||.||||||||++|.+..++.
T Consensus 159 l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHHHhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence 34445667779999999999999999999998775
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.47 E-value=0.0036 Score=57.31 Aligned_cols=23 Identities=43% Similarity=0.725 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.46 E-value=0.0035 Score=59.61 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.+.|+||||+|||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999988543
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.45 E-value=0.0034 Score=61.03 Aligned_cols=28 Identities=36% Similarity=0.398 Sum_probs=25.3
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG 219 (824)
|=+++|+++.|.||||||||||..-++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 5699999999999999999999987763
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.43 E-value=0.0031 Score=57.59 Aligned_cols=22 Identities=45% Similarity=0.594 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++|+|++|+|||||++.+.+..
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998753
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.43 E-value=0.0034 Score=59.22 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+.|+|||||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999765
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.41 E-value=0.0037 Score=58.64 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999864
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.40 E-value=0.0035 Score=59.82 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.+++++|.||||||||.+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999996653
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.33 E-value=0.011 Score=57.24 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=28.4
Q ss_pred cccc-eeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 186 ILKD-VSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 186 IL~~-vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-|++ ++|=+++|+++.|.|+||+|||||..-++-.
T Consensus 22 ~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 22 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3444 2456999999999999999999998877644
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.32 E-value=0.003 Score=58.80 Aligned_cols=23 Identities=48% Similarity=0.777 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+.|+|++||||||+-+.||-.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45679999999999999997764
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.31 E-value=0.0037 Score=58.37 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+.|+|++||||||+-+.||-.+.
T Consensus 5 Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56889999999999999996653
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.29 E-value=0.0033 Score=60.60 Aligned_cols=24 Identities=46% Similarity=0.607 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+++|.|||||||||+-+.|+-.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 889999999999999999998774
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.27 E-value=0.0021 Score=60.03 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++++|||||+|+|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.27 E-value=0.0038 Score=59.72 Aligned_cols=23 Identities=43% Similarity=0.664 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+.|+||||||||||.+.|+-..+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999976543
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.22 E-value=0.0041 Score=58.50 Aligned_cols=22 Identities=68% Similarity=0.998 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.|+|||||||||+-+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999665
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.20 E-value=0.0039 Score=58.58 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.|+|||||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998654
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.19 E-value=0.0042 Score=57.31 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++|+|++|+|||||++.|.|..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 7899999999999999998753
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.17 E-value=0.0043 Score=58.47 Aligned_cols=22 Identities=45% Similarity=0.800 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.|+||+||||||+.+.|+-.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999654
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.16 E-value=0.0043 Score=59.34 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+.|+|||||||||+-+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999654
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.15 E-value=0.0046 Score=59.76 Aligned_cols=45 Identities=18% Similarity=0.338 Sum_probs=31.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH 257 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~ 257 (824)
++||-|++|||||||.+.|+-.+... + +. .....+..+++|+.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~----~--------~~--~~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQN----E--------VD--YRQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG----G--------SC--GGGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh----c--------cc--cCCCceEEEecccccc
Confidence 68999999999999999998665321 0 00 0124467888877654
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.11 E-value=0.0044 Score=58.50 Aligned_cols=21 Identities=33% Similarity=0.294 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
+||+|++.||||||++.|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999874
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.05 E-value=0.0066 Score=62.81 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=34.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGE 259 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~ 259 (824)
++||-|++||||||+.+.|..++... .....+..|++|+.+.+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhh-----------------cCCCceEEEeeeeeECCc
Confidence 78999999999999999998877431 012347888998888763
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.01 E-value=0.0051 Score=59.08 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.00 E-value=0.0053 Score=59.36 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+++|-|||||||||+-+.||-.+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999997764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.94 E-value=0.0042 Score=64.92 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
..-.++|.||||||||||++.|...+.
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999986554
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.93 E-value=0.0068 Score=59.39 Aligned_cols=27 Identities=37% Similarity=0.529 Sum_probs=24.0
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALA 218 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~La 218 (824)
|=+++|+++.|.||||||||||..-++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 569999999999999999999987554
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.84 E-value=0.0019 Score=59.24 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++|+|++|+|||||+|.|.|..
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999863
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.80 E-value=0.0059 Score=56.59 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|.+|||||||++.|.|.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.67 E-value=0.0061 Score=62.97 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
|+.-++++||||+|||+|.|+||..+.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHhhccc
Confidence 444567899999999999999998753
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.59 E-value=0.0082 Score=59.17 Aligned_cols=24 Identities=50% Similarity=0.794 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
..+.|.||||+||||+.++||..+
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999765
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.56 E-value=0.021 Score=55.54 Aligned_cols=92 Identities=15% Similarity=0.229 Sum_probs=58.1
Q ss_pred HcCCcEeEEeCCCCC-CCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHH----hhcCeEEEEcCCeEEEecChhh--
Q 003389 358 VGTANVLYMDEISTG-LDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY----DLFDDIILLSEGQIVYQGPRDN-- 430 (824)
Q Consensus 358 v~~p~iLlLDEPTsG-LDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~----~lfD~iilL~~G~iv~~G~~~~-- 430 (824)
....++|++|+.=.= =+...+..+...+..+.. .++.+|++...+..+.- ++..| |+.|-++.-.|.++
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~-~~~~iiits~~~p~~l~~~~~dL~SR---L~~g~~~~i~p~d~~~ 170 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQKLDGVSDRLVSR---FEGGILVEIELDNKTR 170 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGGGCTTSCHHHHHH---HHTSEEEECCCCHHHH
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhh-ccceEEEecCCcchhccccchHHHHH---hhCceEEEECCCcHHH
Confidence 446789999987432 246777778888887765 57788888776655442 12222 35666665545444
Q ss_pred ---HHHHHHHcCCCCCCCCCHHHHHHHh
Q 003389 431 ---VLEFFEHMGFKCPERKGVADFLQEV 455 (824)
Q Consensus 431 ---~~~~f~~~G~~~p~~~~~adfl~~v 455 (824)
+..++...|+..|+ ++.+|+.+-
T Consensus 171 ~~iL~~~a~~rgl~l~~--~v~~yl~~~ 196 (213)
T d1l8qa2 171 FKIIKEKLKEFNLELRK--EVIDYLLEN 196 (213)
T ss_dssp HHHHHHHHHHTTCCCCH--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCH--HHHHHHHHh
Confidence 23456677777765 567776553
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.53 E-value=0.0093 Score=58.00 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=31.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~ 239 (824)
++|.++-|.|.||||||||.+.|+-.+... ...-.+.++|..+.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~-~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRD-RRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEECHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh-cCceEEEEcchHHH
Confidence 578899999999999999999998654211 00124566765543
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.53 E-value=0.0074 Score=59.26 Aligned_cols=23 Identities=61% Similarity=0.982 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+++.||||+|||||.++|++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999997653
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.50 E-value=0.0078 Score=58.97 Aligned_cols=24 Identities=54% Similarity=0.823 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 200 TLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
+++.||||+|||||.++|+..+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHhccCC
Confidence 689999999999999999977653
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.49 E-value=0.0091 Score=58.29 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=25.4
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG 219 (824)
|=+++|+++.|.||||||||||...++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999999887764
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.48 E-value=0.0077 Score=60.51 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 38999999999999999999974
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.43 E-value=0.0084 Score=58.50 Aligned_cols=22 Identities=64% Similarity=0.937 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.|.||||+|||||.++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 7899999999999999999754
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.34 E-value=0.0089 Score=55.10 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++++|++|+|||||++.+.+-
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999988754
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.31 E-value=0.0088 Score=56.68 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.-+++|-|+.||||||+++.|+..+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998765
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.30 E-value=0.0088 Score=62.26 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
..-.++|.||||||||||+..|...+
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999998654
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.24 E-value=0.0097 Score=56.29 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 003389 199 MTLLLGPPGAGKTTLMLALA 218 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~La 218 (824)
++||.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.10 E-value=0.0087 Score=58.34 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
++++++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998774
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.10 E-value=0.012 Score=57.20 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=25.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+.|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999987664
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.06 E-value=0.011 Score=58.04 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++.++|.||+|+|||||++.++-..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 46789999999999999999887544
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.04 E-value=0.01 Score=55.09 Aligned_cols=22 Identities=55% Similarity=0.658 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++++|++|+|||||++.|.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999654
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.97 E-value=0.014 Score=58.74 Aligned_cols=29 Identities=45% Similarity=0.688 Sum_probs=23.6
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+++..-++|.||||+|||+|.++||..+.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 33446688999999999999999997654
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.95 E-value=0.012 Score=58.75 Aligned_cols=24 Identities=42% Similarity=0.576 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.-++|.||||+|||+|.++||...
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhcc
Confidence 457899999999999999999754
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.88 E-value=0.014 Score=57.24 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
+...++|.||+|+||||+++.|+..+..
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHhc
Confidence 3457899999999999999999987753
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.86 E-value=0.014 Score=56.11 Aligned_cols=27 Identities=33% Similarity=0.386 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999997764
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.80 E-value=0.011 Score=59.64 Aligned_cols=28 Identities=46% Similarity=0.780 Sum_probs=24.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+++..-++|-||||+|||+|.++||+.+
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 4455668899999999999999999875
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.79 E-value=0.013 Score=54.22 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++|+|++|+|||||++.+.+-
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998764
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.75 E-value=0.014 Score=54.13 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++++|++|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988754
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.72 E-value=0.81 Score=45.43 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
+..+++|.|..|.|||||.+.+...
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999988643
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.64 E-value=0.015 Score=57.00 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
+++|+|.+.||||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4999999999999999999875
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.61 E-value=0.015 Score=56.50 Aligned_cols=22 Identities=55% Similarity=0.976 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.|-||+|+|||||.++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6899999999999999999764
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.60 E-value=0.016 Score=62.88 Aligned_cols=44 Identities=25% Similarity=0.416 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQH 253 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~ 253 (824)
-++++||+|+|||-|.+.||+.+.-. -+..++..++ .+|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP-----Fv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP-----FIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC-----EEEEEGGGGC----------CCCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC-----EEEeecceee------ecceeecc
Confidence 68999999999999999999987532 2344443332 37888876
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.59 E-value=0.014 Score=53.80 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++|+|++|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 799999999999999988764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.54 E-value=0.016 Score=53.35 Aligned_cols=20 Identities=15% Similarity=0.414 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 003389 200 TLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG 219 (824)
++|+|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997764
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.50 E-value=0.015 Score=62.25 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++|+|.+|+|||||+|+|.|..
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999964
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.46 E-value=0.016 Score=53.91 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++++|++|+|||||++.+.+-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987653
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.37 E-value=0.017 Score=57.82 Aligned_cols=24 Identities=50% Similarity=0.769 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.-++|.||||+|||+|.++++...
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceeEEecCCCCCchHHHHHHHHHh
Confidence 347899999999999999999764
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.36 E-value=0.017 Score=57.64 Aligned_cols=23 Identities=57% Similarity=0.885 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-+++.||||+|||+|.++|++.+
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEecCCCCChhHHHHHHHHHc
Confidence 47899999999999999999754
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.36 E-value=0.0094 Score=61.85 Aligned_cols=25 Identities=40% Similarity=0.525 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
-++|.||+|+|||||++.|++++++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 4799999999999999999999865
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.28 E-value=0.022 Score=55.25 Aligned_cols=28 Identities=32% Similarity=0.316 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
+|.+++|=|+-||||||+.+.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 6899999999999999999999977653
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.25 E-value=0.02 Score=53.72 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++|+|++|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999998753
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.22 E-value=0.022 Score=55.39 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.+.+++++||+|+||||.+-=||-.+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999998877776553
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.06 E-value=0.02 Score=53.08 Aligned_cols=21 Identities=33% Similarity=0.738 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++|+|++|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999987654
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.025 Score=52.49 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 003389 200 TLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG 219 (824)
++|+|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.01 E-value=0.02 Score=52.69 Aligned_cols=21 Identities=33% Similarity=0.695 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++++|++|+|||||++.+.+-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987753
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.99 E-value=0.028 Score=51.88 Aligned_cols=22 Identities=45% Similarity=0.758 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++|+|++|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998764
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.96 E-value=0.023 Score=52.35 Aligned_cols=20 Identities=30% Similarity=0.624 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 003389 200 TLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG 219 (824)
++|+|.+|+|||||++.+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998775
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.95 E-value=0.021 Score=52.89 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|.+|+|||||++.+.+-
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999987653
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.95 E-value=0.02 Score=52.64 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.+.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999998653
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.89 E-value=0.023 Score=55.13 Aligned_cols=22 Identities=45% Similarity=0.661 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.|-||+|+||||+.++|+..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 6789999999999999998654
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.88 E-value=0.021 Score=52.84 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++|+|++|+|||||++.+.+-
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998864
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.83 E-value=0.024 Score=54.41 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 003389 199 MTLLLGPPGAGKTTLMLALA 218 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~La 218 (824)
++||.|+.||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.82 E-value=0.017 Score=57.07 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
++.|.||||+||||+++.++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 456679999999999999997653
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.81 E-value=0.024 Score=52.14 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++|+|++|+|||||++.+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998764
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.78 E-value=0.041 Score=52.03 Aligned_cols=32 Identities=31% Similarity=0.260 Sum_probs=25.8
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALA 218 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~La 218 (824)
.||..-..+ .|.-++|.||||+|||||...|.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 455444444 89999999999999999998876
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.72 E-value=0.016 Score=54.16 Aligned_cols=21 Identities=48% Similarity=0.648 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++++|++|+|||||++.|.+-
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999988643
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.70 E-value=0.024 Score=54.79 Aligned_cols=22 Identities=50% Similarity=0.943 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.|-||+|+||||+.++|+..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 6799999999999999999754
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.64 E-value=0.026 Score=52.88 Aligned_cols=20 Identities=40% Similarity=0.700 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 003389 200 TLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG 219 (824)
++|+|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.62 E-value=0.026 Score=51.91 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988754
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.58 E-value=0.027 Score=51.52 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 003389 200 TLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG 219 (824)
++|+|.+|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998874
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.57 E-value=0.026 Score=52.52 Aligned_cols=21 Identities=33% Similarity=0.768 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++++|.+|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=92.56 E-value=0.026 Score=54.78 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
..+++++||+|+||||.+-=||-.+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46889999999999998888886653
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.53 E-value=0.025 Score=51.74 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++|+|.+|+|||||++.+.+-
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998754
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.036 Score=51.38 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++|+|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6899999999999999998764
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.37 E-value=0.032 Score=53.70 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 003389 199 MTLLLGPPGAGKTTLMLALA 218 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~La 218 (824)
++||.|+.||||||..+.|.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 68999999999999999986
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.34 E-value=0.027 Score=52.11 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 003389 200 TLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG 219 (824)
++|+|.+|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.32 E-value=0.021 Score=52.99 Aligned_cols=21 Identities=43% Similarity=0.553 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++|+|++|+|||||++.+.+-
T Consensus 15 IvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999998753
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.32 E-value=0.025 Score=55.35 Aligned_cols=22 Identities=45% Similarity=0.706 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.|.||+|+||||+.++++-.+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6899999999999999998754
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.24 E-value=0.056 Score=51.02 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=24.4
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 003389 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 191 s~~I~~Ge~~aLlGpnGSGKSTLL~~LaG 219 (824)
+...-.|.=++|.|+||+|||||...|..
T Consensus 8 ~~v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 8 VLVDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 44556788999999999999999988763
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.24 E-value=0.038 Score=55.54 Aligned_cols=30 Identities=33% Similarity=0.507 Sum_probs=26.5
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
|=+++|+++.|.||||||||||+--++.-.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 789999999999999999999987776543
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.22 E-value=0.028 Score=53.24 Aligned_cols=21 Identities=38% Similarity=0.746 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++|+|++|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 889999999999999987753
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.17 E-value=0.059 Score=54.80 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-+||+|.|.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3899999999999999999975
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.15 E-value=0.029 Score=57.52 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+||+|.|.+|||||+|+|+|-.
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999863
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.09 E-value=0.033 Score=51.15 Aligned_cols=20 Identities=35% Similarity=0.652 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 003389 200 TLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG 219 (824)
++|+|.+|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999999875
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.06 E-value=0.022 Score=52.84 Aligned_cols=20 Identities=35% Similarity=0.710 Sum_probs=8.5
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 003389 200 TLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG 219 (824)
++|+|.+|+|||||++.|.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997775
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.02 E-value=0.034 Score=51.07 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 003389 200 TLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG 219 (824)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998764
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.00 E-value=0.029 Score=53.25 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+++|-|+-||||||+++.|+..+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999998764
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.93 E-value=0.046 Score=50.71 Aligned_cols=29 Identities=38% Similarity=0.491 Sum_probs=25.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.+||.+++|-|+=|||||||.|.++.-+.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 46899999999999999999999986553
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.88 E-value=0.033 Score=51.72 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4689999999999999988754
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=91.77 E-value=0.029 Score=59.07 Aligned_cols=28 Identities=43% Similarity=0.488 Sum_probs=25.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+++..+++.||||+||||+.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 6778999999999999999999999874
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.73 E-value=0.044 Score=51.99 Aligned_cols=23 Identities=39% Similarity=0.419 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+||+|...+|||||++.|.|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 79999999999999999998653
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=91.70 E-value=0.044 Score=58.41 Aligned_cols=29 Identities=34% Similarity=0.625 Sum_probs=25.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
.++-++.|.||.||||||+|.++...+..
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence 46679999999999999999999876643
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.67 E-value=0.037 Score=51.31 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003389 199 MTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG 219 (824)
-++|+|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.66 E-value=0.022 Score=58.03 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
++||-|+|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999987653
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.60 E-value=0.041 Score=50.72 Aligned_cols=21 Identities=29% Similarity=0.581 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++|+|++|+|||||++-+.+-
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998763
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.58 E-value=0.068 Score=50.09 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=26.4
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG 219 (824)
-||. ++..-.|.=++|.|+||+|||||...|..
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3444 55667899999999999999999877753
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.54 E-value=0.041 Score=50.61 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|.+|+|||||++-+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999977654
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.53 E-value=0.041 Score=53.56 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+-.+++++||+|+||||.+-=||-++
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44589999999999999877777554
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.45 E-value=0.028 Score=52.10 Aligned_cols=20 Identities=35% Similarity=0.489 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 003389 200 TLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG 219 (824)
++|+|++|+|||||++.+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997754
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.38 E-value=0.044 Score=50.48 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++++|.+|+|||||++-+.+-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999998743
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.37 E-value=0.047 Score=55.56 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH 257 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~ 257 (824)
++||-|++|||||||.+.|.-.+... . .....+..++.||.+.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~---~-------------~~~~~v~~iS~DdfY~ 71 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK---Y-------------GGEKSIGYASIDDFYL 71 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH---H-------------GGGSCEEEEEGGGGBC
T ss_pred EEEeECCCCCCHHHHHHHHHHHHHHH---h-------------CCCcceEeeccCCCCC
Confidence 78999999999999998886443210 0 0123477888887654
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.37 E-value=0.043 Score=51.23 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988754
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.37 E-value=0.062 Score=54.09 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|-|.+|||||+++|++--
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999753
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.32 E-value=0.045 Score=50.42 Aligned_cols=20 Identities=35% Similarity=0.718 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 003389 200 TLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG 219 (824)
++|+|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997654
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=91.32 E-value=0.046 Score=53.12 Aligned_cols=26 Identities=31% Similarity=0.291 Sum_probs=17.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.-.+++++||+|+||||.+-=||-.+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44679999999999999887777554
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.12 E-value=0.049 Score=50.27 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 003389 200 TLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG 219 (824)
++++|.+|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67899999999999998775
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.11 E-value=0.048 Score=50.26 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003389 199 MTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG 219 (824)
-++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.86 E-value=0.048 Score=53.00 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.+++++||+|+||||.+-=||-++.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999998877786654
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.68 E-value=0.055 Score=50.65 Aligned_cols=19 Identities=37% Similarity=0.623 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 003389 200 TLLLGPPGAGKTTLMLALA 218 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~La 218 (824)
+.|+|.+|+|||||++-+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999984
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.52 E-value=0.1 Score=48.53 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++++|++|+|||||++.+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999977654
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.47 E-value=0.067 Score=55.02 Aligned_cols=26 Identities=38% Similarity=0.646 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
|...++++||+|+|||.|.+.||-.+
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhhc
Confidence 44568899999999999999999765
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.27 E-value=0.058 Score=54.61 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-+++|+||-++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999864
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.17 E-value=0.061 Score=50.35 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 003389 200 TLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG 219 (824)
++|+|.+|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 79999999999999998764
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.12 E-value=0.067 Score=49.00 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++|+|.+|+|||||++-+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999987643
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=89.79 E-value=0.076 Score=54.81 Aligned_cols=26 Identities=38% Similarity=0.524 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
|.-++++.||||+|||.|.++||+..
T Consensus 122 ~~g~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 122 ASGMVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp ESEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHHh
Confidence 44467778999999999999999875
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.73 E-value=0.068 Score=50.21 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++|+|++|+|||||++.+.+-
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999887653
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.67 E-value=0.078 Score=53.80 Aligned_cols=23 Identities=17% Similarity=0.502 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++++|.-+||||||+|+|.|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=89.61 E-value=0.064 Score=53.99 Aligned_cols=30 Identities=40% Similarity=0.629 Sum_probs=27.1
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
|=++.|++|-|-||+|||||||...++...
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~a 81 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQA 81 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHHH
Confidence 788999999999999999999998887654
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.61 E-value=0.075 Score=51.46 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 003389 199 MTLLLGPPGAGKTTLMLALA 218 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~La 218 (824)
-++|+|++|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999874
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.33 E-value=0.065 Score=54.00 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=24.4
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG 219 (824)
+=++.|+++.|.||+|+|||||+-.++.
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHH
Confidence 5788999999999999999999765554
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=89.32 E-value=0.087 Score=52.96 Aligned_cols=21 Identities=52% Similarity=0.680 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 003389 198 RMTLLLGPPGAGKTTLMLALA 218 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~La 218 (824)
+-++|+|+.|||||||..+|.
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCCcHHHHHHHHH
Confidence 357999999999999999994
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=89.19 E-value=0.085 Score=53.57 Aligned_cols=30 Identities=30% Similarity=0.526 Sum_probs=26.1
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.|-.|+-.+|+|++|+|||||+..|+...
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999998643
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.97 E-value=0.088 Score=53.06 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++++|.-+||||||+|+|.|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999964
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.90 E-value=0.09 Score=48.95 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 003389 200 TLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG 219 (824)
++++|.+|+|||||++.+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999986654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.66 E-value=0.096 Score=50.26 Aligned_cols=22 Identities=36% Similarity=0.247 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|..+||||||++.|.+.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 3799999999999999999643
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.31 E-value=0.091 Score=51.13 Aligned_cols=22 Identities=50% Similarity=0.638 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++.|-|.-||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999988754
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=88.18 E-value=0.13 Score=49.95 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG 219 (824)
.++||.|+.||||||..+.|+.
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999964
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.95 E-value=0.13 Score=47.79 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
+.|+|..|+|||||++-+..-
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999998644
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.82 E-value=0.15 Score=51.40 Aligned_cols=21 Identities=29% Similarity=0.153 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 003389 198 RMTLLLGPPGAGKTTLMLALA 218 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~La 218 (824)
+-++|+|+.|||||||...|.
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 357999999999999999983
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.93 E-value=0.16 Score=49.15 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
++++|=|+-||||||+++.|+-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4788999999999999999997654
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.27 E-value=0.21 Score=46.04 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcCCC
Q 003389 200 TLLLGPPGAGKTTLMLALAGKLGKD 224 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l~~~ 224 (824)
++|||..|+|||||++-+....-|+
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~t 29 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEAG 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhhCCCCC
Confidence 6899999999999999886544443
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.87 E-value=0.18 Score=48.18 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
-+++.||+|+||||+.++++..+-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHhcc
Confidence 478899999999999999998654
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=85.83 E-value=0.14 Score=50.91 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=15.1
Q ss_pred EEEEEcCCCCcHHHHH-HHHh
Q 003389 199 MTLLLGPPGAGKTTLM-LALA 218 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL-~~La 218 (824)
-++|+|++||||||.| ..++
T Consensus 16 ~~lI~g~aGTGKTt~l~~rv~ 36 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNKIA 36 (306)
T ss_dssp EEEECCCTTSCHHHHHHHHHH
T ss_pred CEEEEeeCCccHHHHHHHHHH
Confidence 3689999999999754 4443
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.59 E-value=0.26 Score=46.72 Aligned_cols=27 Identities=33% Similarity=0.403 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
|.=-++|+|.-.+|||||++.|.|...
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCeEEEEEEccCCcHHHHHHHHHhhhc
Confidence 333589999999999999999998654
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.45 E-value=0.19 Score=50.32 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
-++|+||||.|||+++.-|+.+..
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHHH
Confidence 457999999999999999998763
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=85.10 E-value=0.15 Score=51.47 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=18.9
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLM 214 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL 214 (824)
.+.|+++.. | -+.|.|++||||||.|
T Consensus 16 Q~~~v~~~~-----g-~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 16 QQEAVRTTE-----G-PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp HHHHHHCCS-----S-CEEEEECTTSCHHHHH
T ss_pred HHHHHhCCC-----C-CEEEEecCCccHHHHH
Confidence 345777643 3 3789999999999765
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=84.65 E-value=0.22 Score=48.48 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.++|-||+|+||||+.++++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Confidence 467889999999999999987653
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.45 E-value=0.24 Score=47.23 Aligned_cols=23 Identities=39% Similarity=0.732 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
..|+||||.|||++..-|+.+..
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHHHH
Confidence 57999999999999999997763
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=84.28 E-value=0.21 Score=52.72 Aligned_cols=20 Identities=40% Similarity=0.612 Sum_probs=17.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 003389 199 MTLLLGPPGAGKTTLMLALA 218 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~La 218 (824)
-++|+|++|||||++++.|.
T Consensus 52 H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEeCCCCcHHHHHHHHH
Confidence 48999999999999987543
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=83.93 E-value=0.25 Score=50.53 Aligned_cols=27 Identities=48% Similarity=0.740 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+|.-..+++||+|+|||.|.+.||-.+
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCcchHHHHHHHHHHHh
Confidence 344467899999999999999999765
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.19 E-value=0.34 Score=48.62 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=25.4
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
..+-.|+..+|+|++|+|||||+.-++..
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 56789999999999999999998877643
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=82.65 E-value=0.31 Score=46.31 Aligned_cols=23 Identities=35% Similarity=0.313 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|..++|||||++.|.+..
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHH
Confidence 47999999999999999998754
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=81.33 E-value=0.35 Score=50.40 Aligned_cols=20 Identities=40% Similarity=0.738 Sum_probs=17.2
Q ss_pred CeEEEEEcCCCCcHHHHHHH
Q 003389 197 SRMTLLLGPPGAGKTTLMLA 216 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~ 216 (824)
+.++.|.||+|+||||++..
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHH
T ss_pred CCeEEEEcCCCCCceehHHH
Confidence 46899999999999998743
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=81.24 E-value=0.47 Score=47.16 Aligned_cols=27 Identities=37% Similarity=0.447 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.+-.++|+|-|.+|||||+|.|.|...
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEEecCccchhhhhhhhhccce
Confidence 334599999999999999999999754
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=81.08 E-value=0.35 Score=50.44 Aligned_cols=22 Identities=50% Similarity=0.821 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++++||+|+|||-|.|.||..+
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eeeeCCCCccHHHHHHHHHhhc
Confidence 6788999999999999999765
|