Citrus Sinensis ID: 003392
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 823 | 2.2.26 [Sep-21-2011] | |||||||
| Q8W4S4 | 821 | Vacuolar proton ATPase a3 | yes | no | 0.980 | 0.982 | 0.807 | 0.0 | |
| Q9SJT7 | 821 | Vacuolar proton ATPase a2 | no | no | 0.980 | 0.982 | 0.788 | 0.0 | |
| Q8RWZ7 | 817 | Vacuolar proton ATPase a1 | no | no | 0.978 | 0.985 | 0.644 | 0.0 | |
| Q54E04 | 815 | Vacuolar proton transloca | yes | no | 0.955 | 0.964 | 0.454 | 0.0 | |
| Q9HBG4 | 840 | V-type proton ATPase 116 | yes | no | 0.958 | 0.939 | 0.430 | 0.0 | |
| Q9Z1G4 | 839 | V-type proton ATPase 116 | yes | no | 0.951 | 0.933 | 0.436 | 0.0 | |
| P25286 | 838 | V-type proton ATPase 116 | yes | no | 0.946 | 0.929 | 0.426 | 0.0 | |
| Q920R6 | 833 | V-type proton ATPase 116 | no | no | 0.948 | 0.937 | 0.433 | 0.0 | |
| Q8AVM5 | 831 | V-type proton ATPase 116 | N/A | no | 0.944 | 0.935 | 0.435 | 0.0 | |
| Q5R422 | 837 | V-type proton ATPase 116 | yes | no | 0.950 | 0.934 | 0.426 | 0.0 |
| >sp|Q8W4S4|VHAA3_ARATH Vacuolar proton ATPase a3 OS=Arabidopsis thaliana GN=VHA-a3 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1341 bits (3470), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 653/809 (80%), Positives = 728/809 (89%), Gaps = 2/809 (0%)
Query: 16 MDLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEM 75
MDL RSE MQLVQ+I+P+ESAHLTVSYLG+LGL+QFKDLNSEKSPFQRTYAAQIK+C EM
Sbjct: 14 MDLMRSETMQLVQLIVPMESAHLTVSYLGDLGLVQFKDLNSEKSPFQRTYAAQIKRCGEM 73
Query: 76 ARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSE 135
ARK+RFF++QM KAG+ + D + DD+EVKLG+LEAELVEINAN DKLQR+++E
Sbjct: 74 ARKIRFFRDQMSKAGVPAKEMQGKENDIDLDDVEVKLGELEAELVEINANNDKLQRSYNE 133
Query: 136 LVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEMSADPSKQIKLG 195
L+EYKLVLQKAGEFFSSA SAA QQRE ESQQ GE +E+PLL + E S D +KQ+KLG
Sbjct: 134 LMEYKLVLQKAGEFFSSAHRSAADQQRETESQQAGEDLLESPLLQE-EKSIDSTKQVKLG 192
Query: 196 FIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFYSGERA 255
F+ GLVPREKSM FER+LFRATRGN+F+RQ V++EPV+DP SGEK EKNVFVVFYSGERA
Sbjct: 193 FLTGLVPREKSMVFERILFRATRGNIFIRQTVIEEPVIDPNSGEKAEKNVFVVFYSGERA 252
Query: 256 KNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQ 315
K+KILKIC+AFGANRYPF+E+ +QAQ I+EVSGRLSELKTT+DAGL R LLQTIGD+
Sbjct: 253 KSKILKICEAFGANRYPFSEDLGRQAQMITEVSGRLSELKTTIDAGLGQRNILLQTIGDK 312
Query: 316 FEQWNLLVKKEKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQIQDALERAAFDSNSQVG 375
FE WNL V+KEK+IYHTLNMLSLDVTKKCLV EGWSPVFA+++IQDAL+RAA DSNSQVG
Sbjct: 313 FELWNLKVRKEKAIYHTLNMLSLDVTKKCLVAEGWSPVFASREIQDALQRAAVDSNSQVG 372
Query: 376 AIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGD 435
+IFQVL TKESPPTYFRTNKFTSA QEIVDAYGVAKY+EANPGVFTIVTFPFLFAVMFGD
Sbjct: 373 SIFQVLRTKESPPTYFRTNKFTSAIQEIVDAYGVAKYQEANPGVFTIVTFPFLFAVMFGD 432
Query: 436 WGHGICLLLGTLVLIVREKKLASQKLDDITDMTFGGRYVILMMALFSIYTGLIYNEFFSV 495
WGHGIC+LL T+ LI++EKKLASQKL DI +M FGGRYVILMM+LFSIYTGLIYNEFFS+
Sbjct: 433 WGHGICILLATMYLILKEKKLASQKLGDIMEMAFGGRYVILMMSLFSIYTGLIYNEFFSI 492
Query: 496 PFEIFSHSAYACRDLSCSEATTVGLIKVRDTYPFGVDPVWHGSRSELPFLNSLKMKMSIL 555
PF +F+ SAY CRD+SCSEATT+GLIKVRDTYPFG+DPVWHGSRSELPFLNSLKMKMSIL
Sbjct: 493 PFPLFAPSAYDCRDVSCSEATTIGLIKVRDTYPFGLDPVWHGSRSELPFLNSLKMKMSIL 552
Query: 556 LGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLSLLIILKWITGSQADL 615
LGV+QMNLGII+SYFNA FF+ VNIW QFIPQ+IFLNSLFGYLS+LII+KW TGSQADL
Sbjct: 553 LGVSQMNLGIIMSYFNARFFKSSVNIWFQFIPQMIFLNSLFGYLSVLIIIKWCTGSQADL 612
Query: 616 YHVMIYMFLSPTDELGDNQLFPGQKTAQLVLLLLAFVSVPWMLLPKPFILKMQHQDRHQG 675
YHVMIYMFLSP DELG+NQLFP QKT QLVLL LA VSVP MLLPKPFILK QH+ RHQG
Sbjct: 613 YHVMIYMFLSPMDELGENQLFPHQKTLQLVLLFLALVSVPCMLLPKPFILKKQHEARHQG 672
Query: 676 QSYEALQSTDESLQPDTN-HDSHGHEEFEFSEVFVHQMIHTIEFVLGAVSNTASYLRLWA 734
Q+Y L TDESL +TN SHGHEEFEFSE+FVHQ+IHTIEFVLGAVSNTASYLRLWA
Sbjct: 673 QAYAPLDETDESLHVETNGGGSHGHEEFEFSEIFVHQLIHTIEFVLGAVSNTASYLRLWA 732
Query: 735 LSLAHSELSSVFYEKVLLLAWGYNNILILIVGIIVFIFATVGVLLVMETLSAFLHALRLH 794
LSLAHSELSSVFYEKVLLLAWGYNN LILIVG++VFIFATVGVLLVMETLSAFLHALRLH
Sbjct: 733 LSLAHSELSSVFYEKVLLLAWGYNNPLILIVGVLVFIFATVGVLLVMETLSAFLHALRLH 792
Query: 795 WVEFQNKFYEGDGYKFSPFSFALLDDEDE 823
WVEFQNKFYEGDGYKF+PF+F +EDE
Sbjct: 793 WVEFQNKFYEGDGYKFAPFTFIFTANEDE 821
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Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase. Involved in vacuolar nutrient storage (e.g. accumulation and storage of nitrate) and in tolerance to some toxic ions (e.g. zinc ions sequestration in vacuoles). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJT7|VHAA2_ARATH Vacuolar proton ATPase a2 OS=Arabidopsis thaliana GN=VHA-a2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8RWZ7|VHAA1_ARATH Vacuolar proton ATPase a1 OS=Arabidopsis thaliana GN=VHA-a1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q54E04|VATM_DICDI Vacuolar proton translocating ATPase 100 kDa subunit OS=Dictyostelium discoideum GN=vatM PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9HBG4|VPP4_HUMAN V-type proton ATPase 116 kDa subunit a isoform 4 OS=Homo sapiens GN=ATP6V0A4 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9Z1G4|VPP1_MOUSE V-type proton ATPase 116 kDa subunit a isoform 1 OS=Mus musculus GN=Atp6v0a1 PE=1 SV=3 | Back alignment and function description |
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| >sp|P25286|VPP1_RAT V-type proton ATPase 116 kDa subunit a isoform 1 OS=Rattus norvegicus GN=Atp6v0a1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q920R6|VPP4_MOUSE V-type proton ATPase 116 kDa subunit a isoform 4 OS=Mus musculus GN=Atp6v0a4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8AVM5|VPP1_XENLA V-type proton ATPase 116 kDa subunit a isoform 1 OS=Xenopus laevis GN=atp6v0a1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5R422|VPP1_PONAB V-type proton ATPase 116 kDa subunit a isoform 1 OS=Pongo abelii GN=ATP6V0A1 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 823 | ||||||
| 224103357 | 821 | predicted protein [Populus trichocarpa] | 0.997 | 1.0 | 0.829 | 0.0 | |
| 356545106 | 818 | PREDICTED: vacuolar proton translocating | 0.986 | 0.992 | 0.820 | 0.0 | |
| 356538733 | 818 | PREDICTED: V-type proton ATPase 116 kDa | 0.986 | 0.992 | 0.819 | 0.0 | |
| 224080403 | 821 | predicted protein [Populus trichocarpa] | 0.997 | 1.0 | 0.817 | 0.0 | |
| 255543805 | 814 | vacuolar proton atpase, putative [Ricinu | 0.987 | 0.998 | 0.845 | 0.0 | |
| 225427716 | 822 | PREDICTED: vacuolar proton translocating | 0.986 | 0.987 | 0.831 | 0.0 | |
| 357473431 | 822 | V-type proton ATPase 116 kDa subunit a i | 0.989 | 0.990 | 0.801 | 0.0 | |
| 33945876 | 815 | vacuolar proton-ATPase subunit-like prot | 0.979 | 0.988 | 0.806 | 0.0 | |
| 164605517 | 815 | CM0216.490.nc [Lotus japonicus] | 0.979 | 0.988 | 0.803 | 0.0 | |
| 297797892 | 820 | VHA-A3 [Arabidopsis lyrata subsp. lyrata | 0.980 | 0.984 | 0.803 | 0.0 |
| >gi|224103357|ref|XP_002313024.1| predicted protein [Populus trichocarpa] gi|222849432|gb|EEE86979.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1410 bits (3650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 683/823 (82%), Positives = 754/823 (91%), Gaps = 2/823 (0%)
Query: 1 MAELQSGGGGGCCPPMDLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSP 60
MAE ++GGG CCPPMDLFRSE MQLVQ+IIPIESAH TVSYLG+LGLLQFKDLN++KSP
Sbjct: 1 MAEARAGGG--CCPPMDLFRSEAMQLVQLIIPIESAHHTVSYLGDLGLLQFKDLNADKSP 58
Query: 61 FQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELV 120
FQRTYAAQIKK EMARKLRFFKEQM+KAGI+ K + + + DDLEVKLG+LEAELV
Sbjct: 59 FQRTYAAQIKKFGEMARKLRFFKEQMVKAGIIPLTKPGAQNEIDVDDLEVKLGELEAELV 118
Query: 121 EINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLT 180
E+NAN +KLQR+++ELVEYKLVL KAGEFFSSAL +A A Q+E+ESQQTGE +++ PLL
Sbjct: 119 EMNANNEKLQRSYNELVEYKLVLNKAGEFFSSALRNATALQKELESQQTGEESLDAPLLQ 178
Query: 181 DKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEK 240
DKE+ + SKQ+KLGFI GLVP+EKSM FER++FRATRGNV++RQA V+EPVVDPVSGEK
Sbjct: 179 DKEILNESSKQVKLGFITGLVPKEKSMPFERIIFRATRGNVYIRQAAVEEPVVDPVSGEK 238
Query: 241 MEKNVFVVFYSGERAKNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDA 300
+EKNV+VVFYSGE+AK KILKIC+AFGANRYPF E+F KQ Q ISEVSGR+SE+K +DA
Sbjct: 239 VEKNVYVVFYSGEKAKTKILKICEAFGANRYPFTEDFGKQIQMISEVSGRISEMKAAIDA 298
Query: 301 GLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQIQ 360
GL HR +LLQTIGDQF QWN LV+KEKSIYHTLNMLSLDVTKKCLV EGWSPVF TKQIQ
Sbjct: 299 GLFHRSHLLQTIGDQFVQWNTLVRKEKSIYHTLNMLSLDVTKKCLVAEGWSPVFGTKQIQ 358
Query: 361 DALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVF 420
DAL+RAAFDSNSQVG IFQVLHT E PPTYFRTNKFTSAFQ+IVDAYGVAKY+EANPGV+
Sbjct: 359 DALQRAAFDSNSQVGTIFQVLHTTELPPTYFRTNKFTSAFQDIVDAYGVAKYQEANPGVY 418
Query: 421 TIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLDDITDMTFGGRYVILMMAL 480
TIVTFPFLFAVMFGDWGHGIC+LL TLV I+REKKL+ QKL DIT+MTFGGRYVILMMAL
Sbjct: 419 TIVTFPFLFAVMFGDWGHGICMLLATLVFIIREKKLSGQKLGDITEMTFGGRYVILMMAL 478
Query: 481 FSIYTGLIYNEFFSVPFEIFSHSAYACRDLSCSEATTVGLIKVRDTYPFGVDPVWHGSRS 540
FSIYTGLIYNEFFSVPFE+F+ SAYACRDLSC +ATT GLIKVR TYPFGVDPVWHGSRS
Sbjct: 479 FSIYTGLIYNEFFSVPFELFAPSAYACRDLSCRDATTEGLIKVRPTYPFGVDPVWHGSRS 538
Query: 541 ELPFLNSLKMKMSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLS 600
ELPFLNSLKMKMSILLGVAQMNLGIILSYFNAT+F+ +NIW QFIPQ+IFLNSLFGYLS
Sbjct: 539 ELPFLNSLKMKMSILLGVAQMNLGIILSYFNATYFKNSLNIWFQFIPQMIFLNSLFGYLS 598
Query: 601 LLIILKWITGSQADLYHVMIYMFLSPTDELGDNQLFPGQKTAQLVLLLLAFVSVPWMLLP 660
LLII+KW TGSQADLYHVMIYMFLSPTDELG+N+LFP QKT Q+VLLLLA VSVPWMLLP
Sbjct: 599 LLIIVKWSTGSQADLYHVMIYMFLSPTDELGENELFPRQKTVQVVLLLLALVSVPWMLLP 658
Query: 661 KPFILKMQHQDRHQGQSYEALQSTDESLQPDTNHDSHGHEEFEFSEVFVHQMIHTIEFVL 720
KPF+LK QH+ RHQG+SY LQST+ESLQ +TNHDSHGHEEFEFSEVFVHQMIHTIEFVL
Sbjct: 659 KPFLLKKQHEARHQGESYTPLQSTEESLQLETNHDSHGHEEFEFSEVFVHQMIHTIEFVL 718
Query: 721 GAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYNNILILIVGIIVFIFATVGVLLV 780
GAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGY+NI IL++G IVFIFATVGVLLV
Sbjct: 719 GAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYHNIFILVIGAIVFIFATVGVLLV 778
Query: 781 METLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSFALLDDEDE 823
METLSAFLHALRLHWVEFQNKFYEGDGYKF PFSFAL++DEDE
Sbjct: 779 METLSAFLHALRLHWVEFQNKFYEGDGYKFYPFSFALVNDEDE 821
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356545106|ref|XP_003540986.1| PREDICTED: vacuolar proton translocating ATPase 100 kDa subunit-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356538733|ref|XP_003537855.1| PREDICTED: V-type proton ATPase 116 kDa subunit a isoform 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224080403|ref|XP_002306128.1| predicted protein [Populus trichocarpa] gi|222849092|gb|EEE86639.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255543805|ref|XP_002512965.1| vacuolar proton atpase, putative [Ricinus communis] gi|223547976|gb|EEF49468.1| vacuolar proton atpase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|225427716|ref|XP_002265086.1| PREDICTED: vacuolar proton translocating ATPase 100 kDa subunit [Vitis vinifera] gi|297744757|emb|CBI38019.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|357473431|ref|XP_003607000.1| V-type proton ATPase 116 kDa subunit a isoform [Medicago truncatula] gi|355508055|gb|AES89197.1| V-type proton ATPase 116 kDa subunit a isoform [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|33945876|emb|CAE45587.1| vacuolar proton-ATPase subunit-like protein [Lotus japonicus] | Back alignment and taxonomy information |
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| >gi|164605517|dbj|BAF98583.1| CM0216.490.nc [Lotus japonicus] | Back alignment and taxonomy information |
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| >gi|297797892|ref|XP_002866830.1| VHA-A3 [Arabidopsis lyrata subsp. lyrata] gi|297312666|gb|EFH43089.1| VHA-A3 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 823 | ||||||
| TAIR|locus:2120217 | 821 | VHA-A3 "vacuolar proton ATPase | 0.996 | 0.998 | 0.774 | 0.0 | |
| TAIR|locus:2050085 | 821 | VHA-A2 "vacuolar proton ATPase | 0.997 | 1.0 | 0.758 | 0.0 | |
| TAIR|locus:2056598 | 817 | VHA-A1 "vacuolar proton ATPase | 0.978 | 0.985 | 0.619 | 5.4e-269 | |
| ZFIN|ZDB-GENE-030131-3027 | 834 | atp6v0a1a "ATPase, H+ transpor | 0.699 | 0.690 | 0.429 | 3.7e-185 | |
| UNIPROTKB|F1NLH4 | 802 | ATP6V0A1 "V-type proton ATPase | 0.697 | 0.715 | 0.426 | 1.2e-177 | |
| DICTYBASE|DDB_G0291858 | 817 | vatM "vacuolar proton ATPase 1 | 0.951 | 0.958 | 0.444 | 4e-170 | |
| FB|FBgn0032373 | 814 | Vha100-5 "Vacuolar H[+] ATPase | 0.701 | 0.708 | 0.402 | 5.5e-169 | |
| MGI|MGI:103286 | 839 | Atp6v0a1 "ATPase, H+ transport | 0.703 | 0.690 | 0.429 | 1.3e-167 | |
| UNIPROTKB|F1PVU4 | 839 | ATP6V0A1 "Uncharacterized prot | 0.710 | 0.697 | 0.426 | 1.3e-165 | |
| UNIPROTKB|F1S1D6 | 832 | LOC100523018 "Uncharacterized | 0.698 | 0.691 | 0.428 | 5.7e-165 |
| TAIR|locus:2120217 VHA-A3 "vacuolar proton ATPase A3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3278 (1159.0 bits), Expect = 0., P = 0.
Identities = 638/824 (77%), Positives = 710/824 (86%)
Query: 1 MAELQSGGGGGCCPPMDLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSP 60
MAE SGGGGGCCPPMDL RSE MQLVQ+I+P+ESAHLTVSYLG+LGL+QFKDLNSEKSP
Sbjct: 1 MAE--SGGGGGCCPPMDLMRSETMQLVQLIVPMESAHLTVSYLGDLGLVQFKDLNSEKSP 58
Query: 61 FQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELV 120
FQRTYAAQIK+C EMARK+RFF++QM KAG+ + D + DD+EVKLG+LEAELV
Sbjct: 59 FQRTYAAQIKRCGEMARKIRFFRDQMSKAGVPAKEMQGKENDIDLDDVEVKLGELEAELV 118
Query: 121 EINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLT 180
EINAN DKLQR+++EL+EYKLVLQKAGEFFSSA SAA QQRE ESQQ GE +E+PLL
Sbjct: 119 EINANNDKLQRSYNELMEYKLVLQKAGEFFSSAHRSAADQQRETESQQAGEDLLESPLLQ 178
Query: 181 DKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEK 240
+ E S D +KQ+KLGF+ GLVPREKSM FER+LFRATRGN+F+RQ V++EPV+DP SGEK
Sbjct: 179 E-EKSIDSTKQVKLGFLTGLVPREKSMVFERILFRATRGNIFIRQTVIEEPVIDPNSGEK 237
Query: 241 MEKNVFVVFYSGERAKNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDA 300
EKNVFVVFYSGERAK+KILKIC+AFGANRYPF+E+ +QAQ I+EVSGRLSELKTT+DA
Sbjct: 238 AEKNVFVVFYSGERAKSKILKICEAFGANRYPFSEDLGRQAQMITEVSGRLSELKTTIDA 297
Query: 301 GLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQIQ 360
GL R LLQTIGD+FE WNL V+KEK+IYHTLNMLSLDVTKKCLV EGWSPVFA+++IQ
Sbjct: 298 GLGQRNILLQTIGDKFELWNLKVRKEKAIYHTLNMLSLDVTKKCLVAEGWSPVFASREIQ 357
Query: 361 DALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVF 420
DAL+RAA DSNSQVG+IFQVL TKESPPTYFRTNKFTSA QEIVDAYGVAKY+EANPGVF
Sbjct: 358 DALQRAAVDSNSQVGSIFQVLRTKESPPTYFRTNKFTSAIQEIVDAYGVAKYQEANPGVF 417
Query: 421 TIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLDDITDMTFGGRYVILMMAL 480
TIVTFPFLFAVMFGDWGHGIC+LL T+ LI++EKKLASQKL DI +M FGGRYVILMM+L
Sbjct: 418 TIVTFPFLFAVMFGDWGHGICILLATMYLILKEKKLASQKLGDIMEMAFGGRYVILMMSL 477
Query: 481 FSIYTGLIYNEFFSVPFEIFSHSAYACRDLSCSEATTVGLIKVRDTYPFGVDPVWHGSRS 540
FSIYTGLIYNEFFS+PF +F+ SAY CRD+SCSEATT+GLIKVRDTYPFG+DPVWHGSRS
Sbjct: 478 FSIYTGLIYNEFFSIPFPLFAPSAYDCRDVSCSEATTIGLIKVRDTYPFGLDPVWHGSRS 537
Query: 541 ELPFLNSLKMKMSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLS 600
ELPFLNSLKMKMSILLGV+QMNLGII+SYFNA FF+ VNIW QFIPQ+IFLNSLFGYLS
Sbjct: 538 ELPFLNSLKMKMSILLGVSQMNLGIIMSYFNARFFKSSVNIWFQFIPQMIFLNSLFGYLS 597
Query: 601 LLIILKWITGSQADLYHVMIYMFLSPTDELGDNQLFPGQKTAQLVLLLLAFVSVPWMLLP 660
+LII+KW TGSQADLYHVMIYMFLSP DELG+NQLFP QKT QLVLL LA VSVP MLLP
Sbjct: 598 VLIIIKWCTGSQADLYHVMIYMFLSPMDELGENQLFPHQKTLQLVLLFLALVSVPCMLLP 657
Query: 661 KPFILKMQHQDRHQGQSYEALQSTDESLQPDTNHDXXXXXXXXXXXXXXX-QMIHTIEFV 719
KPFILK QH+ RHQGQ+Y L TDESL +TN Q+IHTIEFV
Sbjct: 658 KPFILKKQHEARHQGQAYAPLDETDESLHVETNGGGSHGHEEFEFSEIFVHQLIHTIEFV 717
Query: 720 LGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWXXXXXXXXXXXXXXXXXATVGVLL 779
LGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAW ATVGVLL
Sbjct: 718 LGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYNNPLILIVGVLVFIFATVGVLL 777
Query: 780 VMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSFALLDDEDE 823
VMETLSAFLHALRLHWVEFQNKFYEGDGYKF+PF+F +EDE
Sbjct: 778 VMETLSAFLHALRLHWVEFQNKFYEGDGYKFAPFTFIFTANEDE 821
|
|
| TAIR|locus:2050085 VHA-A2 "vacuolar proton ATPase A2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2056598 VHA-A1 "vacuolar proton ATPase A1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-3027 atp6v0a1a "ATPase, H+ transporting, lysosomal V0 subunit a isoform 1a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NLH4 ATP6V0A1 "V-type proton ATPase 116 kDa subunit a isoform 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0291858 vatM "vacuolar proton ATPase 100-kDa subunit" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0032373 Vha100-5 "Vacuolar H[+] ATPase 100kD subunit 5" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:103286 Atp6v0a1 "ATPase, H+ transporting, lysosomal V0 subunit A1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PVU4 ATP6V0A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1S1D6 LOC100523018 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SJT7 | VHAA2_ARATH | No assigned EC number | 0.7883 | 0.9805 | 0.9829 | no | no |
| Q54E04 | VATM_DICDI | No assigned EC number | 0.4546 | 0.9550 | 0.9644 | yes | no |
| P25286 | VPP1_RAT | No assigned EC number | 0.4267 | 0.9465 | 0.9295 | yes | no |
| Q9I8D0 | VPP1_CHICK | No assigned EC number | 0.4213 | 0.9392 | 0.9224 | yes | no |
| A1A5G6 | VPP1_XENTR | No assigned EC number | 0.4262 | 0.9441 | 0.9283 | yes | no |
| Q8W4S4 | VHAA3_ARATH | No assigned EC number | 0.8071 | 0.9805 | 0.9829 | yes | no |
| O13742 | VPH1_SCHPO | No assigned EC number | 0.3735 | 0.9550 | 0.9458 | yes | no |
| P30628 | VPP1_CAEEL | No assigned EC number | 0.3950 | 0.9756 | 0.8872 | yes | no |
| P32563 | VPH1_YEAST | No assigned EC number | 0.3606 | 0.9368 | 0.9178 | yes | no |
| Q9Z1G4 | VPP1_MOUSE | No assigned EC number | 0.4365 | 0.9513 | 0.9332 | yes | no |
| Q9HBG4 | VPP4_HUMAN | No assigned EC number | 0.4305 | 0.9586 | 0.9392 | yes | no |
| Q5R422 | VPP1_PONAB | No assigned EC number | 0.4263 | 0.9501 | 0.9342 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 823 | |||
| pfam01496 | 707 | pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni | 0.0 | |
| COG1269 | 660 | COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su | 1e-92 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 4e-29 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 2e-23 |
| >gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family | Back alignment and domain information |
|---|
Score = 641 bits (1656), Expect = 0.0
Identities = 312/786 (39%), Positives = 437/786 (55%), Gaps = 90/786 (11%)
Query: 40 VSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSS---VK 96
V LGELGL+Q +DLN + S FQR + ++++C E+ RKLR + ++ K GI K
Sbjct: 1 VDALGELGLVQIRDLNEDVSAFQRKFVNEVRRCDEVERKLRKLESKIKKLGIPLKDTGGK 60
Query: 97 STTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTS 156
DLE ++ DLEAE+ E+ N + L++ +EL E+ VL + F
Sbjct: 61 PDVPPSKEFLDLEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFL------ 114
Query: 157 AAAQQREMESQQTGEMTIETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRA 216
+ E E L ++ +KLGF+AG++ REK +FER L+RA
Sbjct: 115 ----------DENLEELSELSNLDIDFKYLRGAEGLKLGFVAGVINREKLEAFERELWRA 164
Query: 217 TRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFYSGERAKNKILKICDAFGANRYPFNEE 276
RG ++RQA ++EP+ DP K VF++F+ G+ +K+ KI D+FG Y E
Sbjct: 165 CRG--YIRQAEIEEPLEDPK------KTVFIIFFVGKEDLDKVKKILDSFGFELYDVPET 216
Query: 277 FDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTLNML 336
++++ IS+V+ R+ EL+ L+ H +L I D+ W+ V KEK++Y TLN+
Sbjct: 217 EGERSELISKVNKRIEELQRVLEQTESHLEKVLVKIADELLAWDEQVSKEKAVYETLNLF 276
Query: 337 SLDVTKKCLVGEGWSPVFATKQIQDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKF 396
+ K L+ EGW P ++++ ALE A S S V +I + T E PPTY + NKF
Sbjct: 277 N--YDTKTLIAEGWVPAKDLEKLKAALENATEGSGS-VPSIENDIETNEEPPTYLKNNKF 333
Query: 397 TSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKL 456
T+ FQ IVDAYG+ KYRE +P FTI+TFPF F +MFGD G+G+ + L L+L++ EKKL
Sbjct: 334 TAPFQMIVDAYGIPKYREIDPTPFTIITFPFFFGMMFGDAGYGLLMFLIALLLVLLEKKL 393
Query: 457 ASQKLDDITDMTFGGRYVILMMALFSIYTGLIYNEFFSVPFEIFSHSAYACRDLSCSEAT 516
F GRY++L+M +FSIYTG IYN+ F IF S + + S T
Sbjct: 394 G--------KKKFKGRYILLLMGVFSIYTGFIYNDCFGKSLNIFG-SGWLWPVMIKSGET 444
Query: 517 TVGLIKVRDTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNATFFR 576
YPFG+DP W+G ++L FLNS KMK+SI+LGV M G+ L +FN F+
Sbjct: 445 LTLAPHE-GPYPFGIDPEWNGVENKLLFLNSYKMKLSIILGVIHMTFGLFLGFFNHVKFK 503
Query: 577 IGVNIWCQFIPQIIFLNSLFGYLSLLIILKWITGSQADLYHV------MIYMFLSPTDEL 630
++I FIPQ+ +L +FGYL +LII KW+ +I MFL P
Sbjct: 504 SKIDIKDAFIPQLSWLIIIFGYLVILIIYKWLVDWAKTSKPAPSLLIGLINMFLFP---- 559
Query: 631 GDNQLFPGQKTAQLVLLLLAFVSVPWMLLPKPFILKMQHQDRHQGQSYEALQSTDESLQP 690
Q+ L++LA V VP +LL KP L + +
Sbjct: 560 ----------GVQVFLVVLALVCVPILLLLKPLFLMREGKKG------------------ 591
Query: 691 DTNHDSHGHEEFEFSEVFVHQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKV 750
EFEF EV +HQ+IHTIEF LG VS+TASYLRLWALSLAH++LS+V V
Sbjct: 592 ----------EFEFGEVMIHQVIHTIEFCLGCVSHTASYLRLWALSLAHAQLSAVLNTMV 641
Query: 751 LLLAWGYNN-ILILIVGIIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYK 809
+L+ + I +++V IIVF+ + L+ME LSAFLHALRLH+VEF +KFYEG G K
Sbjct: 642 ILIGFESIGVIALVVVFIIVFVL-GHAINLIMEGLSAFLHALRLHYVEFFSKFYEGGGRK 700
Query: 810 FSPFSF 815
F PFSF
Sbjct: 701 FEPFSF 706
|
This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) subunits, as well as V-type ATP synthase subunit i. The V-type ATPases family are proton pumps that acidify intracellular compartments in eukaryotic cells for example yeast central vacuoles, clathrin-coated and synaptic vesicles. They have important roles in membrane trafficking processes. The 116kDa subunit (subunit a) in the V-type ATPase is part of the V0 functional domain responsible for proton transport. The a subunit is a transmembrane glycoprotein with multiple putative transmembrane helices it has a hydrophilic amino terminal and a hydrophobic carboxy terminal. It has roles in proton transport and assembly of the V-type ATPase complex. This subunit is encoded by two homologous gene in yeast VPH1 and STV1. Length = 707 |
| >gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 823 | |||
| KOG2189 | 829 | consensus Vacuolar H+-ATPase V0 sector, subunit a | 100.0 | |
| PF01496 | 759 | V_ATPase_I: V-type ATPase 116kDa subunit family ; | 100.0 | |
| PRK05771 | 646 | V-type ATP synthase subunit I; Validated | 100.0 | |
| COG1269 | 660 | NtpI Archaeal/vacuolar-type H+-ATPase subunit I [E | 100.0 | |
| PF14257 | 262 | DUF4349: Domain of unknown function (DUF4349) | 93.51 | |
| PF03223 | 371 | V-ATPase_C: V-ATPase subunit C; InterPro: IPR00490 | 89.76 | |
| PRK05771 | 646 | V-type ATP synthase subunit I; Validated | 82.89 |
| >KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-182 Score=1520.94 Aligned_cols=795 Identities=53% Similarity=0.885 Sum_probs=702.2
Q ss_pred CCCccccccCceEEEEeccccHHHHHHHhhccCcEEEecCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 003392 15 PMDLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSS 94 (823)
Q Consensus 15 ~~s~fRSe~M~~~~li~~~e~a~~~v~~Lg~lg~Vqf~Dln~~~~~~~r~~~~~i~r~eE~~~kl~~l~~~l~k~~i~~~ 94 (823)
|+||||||+|+++|+++|+|.|++||++|||+|+|||+|||+++++|||.|+++++||||||||+||++++++|.+++.+
T Consensus 1 ~~s~fRSE~M~L~Ql~l~~eaAy~~vaeLGelGlvqFrDLN~~v~afQR~fv~evrRcdemeRklrfl~~ei~k~~i~~~ 80 (829)
T KOG2189|consen 1 MGSLFRSEEMCLVQLFLQSEAAYQCVAELGELGLVQFRDLNPDVSAFQRKFVNEVRRCDEMERKLRFLESEIKKAGIPLP 80 (829)
T ss_pred CccccccccceeeEEEecHHHHHHHHHHhhccCeeEeeeCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999887764
Q ss_pred ---CCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHhhhhhhhccCC
Q 003392 95 ---VKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGE 171 (823)
Q Consensus 95 ---~~~~~~~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~~~~~~l~~~~~~~~~~~~~~~~i~~~~ 171 (823)
+..++|.+.+++++|++++++|+|+++++++.++|+++.++|.|++++|+++++||+.......+ . +....
T Consensus 81 ~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E~~~vl~~t~~Ff~~~~~~~~~--~--~~~~~-- 154 (829)
T KOG2189|consen 81 DLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELLELKYVLEKTDEFFSTSVQESFE--D--DETAD-- 154 (829)
T ss_pred CccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhc--c--hhhhh--
Confidence 45567788999999999999999999999999999999999999999999999999853211000 0 00000
Q ss_pred CCcCCCCccccccCCCCCCcceEEEEEEEEcCCCHHHHHHHHHHhhcCcEEEEeeccCCccccCCCCcccceEEEEEEEe
Q 003392 172 MTIETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFYS 251 (823)
Q Consensus 172 ~~~~~~ll~~~e~~~~~~~~~~~~~~~G~I~~~~~~~f~~~l~r~~~~~~~~~~~~i~~~~~~~~~~~~~~k~v~vv~~~ 251 (823)
....++... + ..+....++++++|+|++++...|+|.|||+||||+|++..++|+++.||.+|+..+|+||+|+++
T Consensus 155 -~~~~~~~~~-~--~~~~~~~~l~FvaGvI~r~k~~~fER~LWRa~Rgn~f~r~~~ie~~l~dp~Tge~~~K~vFivF~~ 230 (829)
T KOG2189|consen 155 -LGEGPLESA-E--KGPFDGLKLGFVAGVINREKVFAFERMLWRACRGNLFIRQSDIEEPLEDPKTGEPVEKNVFIVFFQ 230 (829)
T ss_pred -hcccccchh-c--cCCCCcccceeEEeeechhHHHHHHHHHHHHhccceEEEeecccccccCCccCCcceeEEEEEEee
Confidence 000111111 0 012334589999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHhhhccCcEEeeCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003392 252 GERAKNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYH 331 (823)
Q Consensus 252 ~~~~~~~v~~i~~~~~~~~~~~p~~~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~i~~ 331 (823)
|+..+.||+|||++++++.||+|+++..+++.+.+++.+++|++..+.++++.+...+....+.+..|...++|+|++|+
T Consensus 231 Geql~~kIkKIcd~f~a~~yp~p~~~~er~~~~~~v~~ri~DL~~Vl~~t~~~r~~vL~~~~~~l~~W~~~v~K~KaIyh 310 (829)
T KOG2189|consen 231 GEQLKQKIKKICDGFGATLYPCPESPEERKEMLLEVNTRISDLQTVLDQTEDHRSRVLQAAAKNLPSWLIKVRKEKAIYH 310 (829)
T ss_pred cHHHHHHHHHHHhccCcEeecCCCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccccCcEEEEEEEeecCCHHHHHHHHHhhhhcCCCceEEEEEecCCCCCCCcccccccchhhHHHHHHhccCCC
Q 003392 332 TLNMLSLDVTKKCLVGEGWSPVFATKQIQDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAK 411 (823)
Q Consensus 332 ~l~~~~~~~t~~~~~~~GWvP~~~~~~l~~~l~~~~~~~~~~v~~~~~~~~~~~~pPt~l~n~~~~~pFe~iv~~Yg~P~ 411 (823)
+||++++|.|+++++.|||||..+++.++++|++.+...|..++.+.+.+++++.|||+.|+|||+++||.|||.||+++
T Consensus 311 tLN~fn~Dvt~KCLIaE~W~P~~dl~~vq~aL~~~~~~sgS~v~~i~nv~~T~e~PPTy~RTNKFT~~FQ~IvDaYGVa~ 390 (829)
T KOG2189|consen 311 TLNMFNFDVTQKCLIAEGWCPVADLPDLQRALERGSEESGSQVPSILNVMETNEMPPTYFRTNKFTAGFQNIVDAYGVAS 390 (829)
T ss_pred HHhccCccccCceEEEEeecchhhHHHHHHHHHHhhhhcCCcchhhHhheecCCCCCcchhcchhhHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCcchhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhhhcccc-ccchhhhchhhHHHHHHHHHHHHHHHHHhc
Q 003392 412 YREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQK-LDDITDMTFGGRYVILMMALFSIYTGLIYN 490 (823)
Q Consensus 412 Y~EiDPt~~~ai~Fp~fFG~MfGD~GyGlll~l~~~~l~~~~~~~~~~~-~~~~~~~~~~gr~il~~~gi~si~~G~lyg 490 (823)
|+|+||+|++.|||||+|++||||+|||++++++|+|+++++||+.+.+ .+++++|+|+||||+++||++|||+|+|||
T Consensus 391 YrEvNPa~yTiITFPFLFAVMFGD~GHG~imlL~al~~Vl~Ekkl~~~k~~~EI~~mfF~GRYIIlLMGlFSiYTGliYN 470 (829)
T KOG2189|consen 391 YREVNPAPYTIITFPFLFAVMFGDLGHGLIMLLAALWMVLNEKKLASQKIGDEIFNMFFGGRYIILLMGLFSIYTGLIYN 470 (829)
T ss_pred ccccCCCceeEeehHHHHHHHhcccchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999998876 459999999999999999999999999999
Q ss_pred cccccccccccccccccccCCC----Ccccc---cccccccCcccccccCCCcCCCCCccccchhhHHHHHHHHHHHHHH
Q 003392 491 EFFSVPFEIFSHSAYACRDLSC----SEATT---VGLIKVRDTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNL 563 (823)
Q Consensus 491 ~fFG~~~~~fg~s~~~~~~~~~----~~~~~---~g~~~~~~~~~fg~dp~w~~~~~~l~f~ns~~m~~si~iGv~~~~~ 563 (823)
|+|+.++++|| |+|.++.+.. .+... .+..+.+.|||||+||+|+.+.|+|+|+||+|||+||++|++||++
T Consensus 471 D~FSks~niFg-S~W~~~~~~~~~~~~e~~~~p~~~~~~~~gpYPfGvDPiW~~a~N~L~FLNS~KMKmSIIlGi~hM~f 549 (829)
T KOG2189|consen 471 DFFSKSMNIFG-SSWSNPYNVTAVLCSEALLTPEIGGAKFGGPYPFGVDPIWHLADNKLSFLNSMKMKMSIILGIIHMTF 549 (829)
T ss_pred hhccccccccc-CcccCccccchhccccccccCCCCcccccCCCCCcCChhhhcccccchhhhhhHHHHHHHHHHHHHHH
Confidence 99999999996 9999875432 11111 1111234589999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCchhhHhhhhhHHHHHHHHHHHHHHHHHHHHhh------cCchhHHHHHHHhhcCCCCCCCCCccCC
Q 003392 564 GIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLSLLIILKWIT------GSQADLYHVMIYMFLSPTDELGDNQLFP 637 (823)
Q Consensus 564 g~~l~~~n~~~~~~~~~~~~~~~~~~l~~~~~~gyl~~~i~~~w~~------~~~p~l~~~~i~~~l~~~~~~~~~~~~~ 637 (823)
|+++++.|++++|++.|++++++||++|+.|+||||+++|+|||+. .++|||++++|||||.|+.. .+.++||
T Consensus 550 Gv~lS~~N~~~Fk~~~~I~~~FIPq~iFl~~iFgYL~~~IiyKW~~~~~~~~~~aPslLi~lInMFl~~~~~-~~~~lyp 628 (829)
T KOG2189|consen 550 GVILSVFNHIYFKSKLDIILVFIPQLIFLLSLFGYLVFLIIYKWLVFWAKTSNCAPSLLIMLINMFLFPGTD-AGFQLYP 628 (829)
T ss_pred HHHHHHHHHHHhccchheeeeccHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCchHHHHHHHHHhCCCCC-CccccCC
Confidence 9999999999999999999999999999999999999999999995 36999999999999999862 2238999
Q ss_pred chhhHHHHHHHHHHHHhhhhccchhhhhhhccccc----ccccccccccccccCC----CC-CCCC--CCCCCccchhHH
Q 003392 638 GQKTAQLVLLLLAFVSVPWMLLPKPFILKMQHQDR----HQGQSYEALQSTDESL----QP-DTNH--DSHGHEEFEFSE 706 (823)
Q Consensus 638 g~~~~~~~l~~~~~~~v~~~l~~~pl~~~~~~~~~----~~g~~~~~~~~~~~~~----~~-~~~~--~~~~~~~~~~~~ 706 (823)
+|..+|.+++++|++||||||++||++++++|+++ +++..+.....+++.. +. ++.+ +.++++++++||
T Consensus 629 ~Q~~vQ~~ll~~Al~cVPwmLl~KPl~l~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~fse 708 (829)
T KOG2189|consen 629 GQKQVQLILLVLALVCVPWMLLGKPLYLRRRHKNRLRERHQGQSAGRLDSTDGSVHGPTSDAEDGGGVGDGEEEEFEFSE 708 (829)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcchHHHHHHhhhccccccccchhcccccccccccCCccccccCCCCCCCCcCccchhh
Confidence 99999999999999999999999999998877653 1222222121111111 11 1111 113445688999
Q ss_pred HHHHHHHHHHHHHhhhchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCc---hhhHHHHHHHHHHHHHHHHHHHhh
Q 003392 707 VFVHQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYNN---ILILIVGIIVFIFATVGVLLVMET 783 (823)
Q Consensus 707 ~~i~~~i~~ie~vl~~lsntlSYlRL~Al~LAh~~La~vf~~~~~~~~~~~~~---~~~~i~~~~v~~~~~~~il~~le~ 783 (823)
++|||.|||||+||||+|||+||+||||||||||||++|+|+|++..+++.++ .+++++.+.+|+++|++++++|||
T Consensus 709 I~iHQaIHTIEf~LgcVShTASYLRLWALSLAHAQLSeVLW~Mvl~~g~~~~~~~g~i~~~~if~~f~~lTv~ILv~MEG 788 (829)
T KOG2189|consen 709 IFIHQAIHTIEFVLGCVSHTASYLRLWALSLAHAQLSEVLWTMVLRIGLGLGGYVGVIGLVALFGVFAVLTVAILVLMEG 788 (829)
T ss_pred HHhhhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999988875333 222344445677779999999999
Q ss_pred hhhHhhhhhhheeeecccccccCCccccccccccccCc
Q 003392 784 LSAFLHALRLHWVEFQNKFYEGDGYKFSPFSFALLDDE 821 (823)
Q Consensus 784 L~~fiH~lRL~~vEFf~KFY~G~G~~F~Pf~~~~~~~~ 821 (823)
||||+||||||||||+||||+|+|++|.||+++.++++
T Consensus 789 LSAfLHaLRLHWVEFqsKFy~G~Gy~F~PFsF~~~~~~ 826 (829)
T KOG2189|consen 789 LSAFLHALRLHWVEFQSKFYEGTGYKFEPFSFKLILDE 826 (829)
T ss_pred HHHHHHHHHHHHHHHhhhhcCCCCcccccceeehhhhh
Confidence 99999999999999999999999999999999988764
|
|
| >PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
| >PRK05771 V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] | Back alignment and domain information |
|---|
| >PF14257 DUF4349: Domain of unknown function (DUF4349) | Back alignment and domain information |
|---|
| >PF03223 V-ATPase_C: V-ATPase subunit C; InterPro: IPR004907 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
| >PRK05771 V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 823 | ||||
| 2nvj_A | 25 | Nmr Structures Of Transmembrane Segment From Subuni | 4e-04 |
| >pdb|2NVJ|A Chain A, Nmr Structures Of Transmembrane Segment From Subunit A From The Yeast Proton V-Atpase Length = 25 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber} Length = 357 | Back alignment and structure |
|---|
Score = 230 bits (588), Expect = 9e-69
Identities = 49/410 (11%), Positives = 107/410 (26%), Gaps = 61/410 (14%)
Query: 11 GCCPPMDLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIK 70
G + + M+ + + P A ++ L + G++ L ++ R +
Sbjct: 1 GSAGSGTIDDDDKMEKLIVAGPKRLARELLAELQKAGVVHIDPLRPDELGEYRLSPTEEA 60
Query: 71 KCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQ 130
+ + ++ + G+ + S + ++ E L + + + L+
Sbjct: 61 ELKRWEAVVSQAEQSLTVVGLATVPSSK-PFTGSLEEAEAVLRPVASRAEVLGKERAALE 119
Query: 131 RAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEMSADPSK 190
+ + +K +
Sbjct: 120 EEIQTIELFGKAAEKLAALAH-----------------------------------GLDE 144
Query: 191 QIKLGFIAGLV-PREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVF 249
+LG I LV E+ + + L A L E +E + +
Sbjct: 145 SPRLGVIPFLVAKPEELEAVRKALQEALADRFVLEA-------------EPLENQLAALV 191
Query: 250 YSGERAKNKILKICDAFGANRYPFNEEFD--KQAQAISEVSGRLSELKTTLDAGLLHRGN 307
G F + +A + + R L
Sbjct: 192 VVKRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVAR 251
Query: 308 LLQTIGDQFEQWNLLVKKEKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQIQDALERAA 367
L + G+ K E + Y + ++ K GW P A ++++AL R
Sbjct: 252 LSRESGEALIALWTRAKDEVARYKAVADMA--AGKYGAALMGWVPQKAKGKVEEALGRLR 309
Query: 368 FDSNSQVGAIFQVL---HTKESPPTYFRTNKFTSAFQEIVDAYGVAKYRE 414
Q+ F+ + H P + F+ + Y
Sbjct: 310 ----DQIVYTFEPVDEHHESHQVPVTLENPAWAKPFELLHGFLNTPAYGS 355
|
| >2nvj_A 25MER peptide from vacuolar ATP synthase subunit A, vacuolar isoform; ALFA helix, 3,10 helix, PI helix, hydrolase; NMR {Synthetic} Length = 26 | Back alignment and structure |
|---|
| >2jtw_A Transmembrane helix 7 of yeast vATPase; peptide, micelle-bound, membrane protein; NMR {Synthetic} PDB: 2rpw_X Length = 26 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 823 | |||
| 3rrk_A | 357 | V-type ATPase 116 kDa subunit; alpha beta fold, pr | 100.0 | |
| 2nvj_A | 26 | 25MER peptide from vacuolar ATP synthase subunit A | 98.99 | |
| 2jtw_A | 26 | Transmembrane helix 7 of yeast vATPase; peptide, m | 98.73 | |
| 1u7l_A | 392 | Vacuolar ATP synthase subunit C; hydrolase, struct | 85.81 |
| >3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-46 Score=410.99 Aligned_cols=341 Identities=14% Similarity=0.141 Sum_probs=247.2
Q ss_pred CccccccCceEEEEeccccHHHHHHHhhccCcEEEecCCCCCChhh--hhhH-HHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 003392 17 DLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQ--RTYA-AQIKKCAEMARKLRFFKEQMLKAGILS 93 (823)
Q Consensus 17 s~fRSe~M~~~~li~~~e~a~~~v~~Lg~lg~Vqf~Dln~~~~~~~--r~~~-~~i~r~eE~~~kl~~l~~~l~k~~i~~ 93 (823)
.|+||++|+|++|++|++.+++++++||++|+|||+|++++.+.++ +++. +++++|+++.++++++.+++.+...+.
T Consensus 7 ~~~~pekM~kv~l~~~~~~~~~vl~~L~~lg~vhi~d~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~L~~~~~~~ 86 (357)
T 3rrk_A 7 TIDDDDKMEKLIVAGPKRLARELLAELQKAGVVHIDPLRPDELGEYRLSPTEEAELKRWEAVVSQAEQSLTVVGLATVPS 86 (357)
T ss_dssp -------CEEEEEEECGGGHHHHHHHHHHHTCEEEEEECGGGGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred CCCChhheEEEEEEeEHHHHHHHHHHHHHcCcEEEEeccccccccccCCccchHHHhHHHHHHHHHHHHHHHhccccccc
Confidence 5899999999999999999999999999999999999998777776 5554 578999999999999999998654221
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHHhhhhhhhccCCC
Q 003392 94 SVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFF-SSALTSAAAQQREMESQQTGEM 172 (823)
Q Consensus 94 ~~~~~~~~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~~~~~~l-~~~~~~~~~~~~~~~~i~~~~~ 172 (823)
.++...+++++++.++++++++.++.+++++|+++++++++.+.+++....|- + +
T Consensus 87 ----~~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~~~~-------------------l- 142 (357)
T 3rrk_A 87 ----SKPFTGSLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALAHG-------------------L- 142 (357)
T ss_dssp ----SSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-------------------T-
T ss_pred ----ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcc-------------------C-
Confidence 01223458999999999999999999999999999999999977777666552 1 1
Q ss_pred CcCCCCccccccCCCCCCcceEEEEEEEE-cCCCHHHHHHHHHHhhcCcEEEEeeccCCccccCCCCcccceEEEEEEEe
Q 003392 173 TIETPLLTDKEMSADPSKQIKLGFIAGLV-PREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFYS 251 (823)
Q Consensus 173 ~~~~~ll~~~e~~~~~~~~~~~~~~~G~I-~~~~~~~f~~~l~r~~~~~~~~~~~~i~~~~~~~~~~~~~~k~v~vv~~~ 251 (823)
+ . ..++.+++|+| ++++.++|++.+++.+++..+... ++...+.++++++
T Consensus 143 --d---~-----------~~~~g~~~g~ip~~~~~~~~~~~l~~~~~~~~~~~~------------~~~~~~~~~vv~~- 193 (357)
T 3rrk_A 143 --D---E-----------SPRLGVIPFLVAKPEELEAVRKALQEALADRFVLEA------------EPLENQLAALVVV- 193 (357)
T ss_dssp --T---T-----------CTTEEEEEEEESCHHHHHHHHHHHHHHHTTSCEEEE------------EECSSSEEEEEEE-
T ss_pred --C---c-----------cceeeeeeEEecChhhHHHHHHHHHHhcCCeEEEEe------------ecCCCcEEEEEEE-
Confidence 1 1 34689999999 799999999999999888422211 1112244444444
Q ss_pred ChhhHHHHHHhhhccCcEEeeCCCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003392 252 GERAKNKILKICDAFGANRYPFNEEFD--KQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSI 329 (823)
Q Consensus 252 ~~~~~~~v~~i~~~~~~~~~~~p~~~~--~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~i 329 (823)
+++..++++++|+++||+++++|+..+ +|.+.++++++++++++++++++++++++..+.+...+..|...+.+++++
T Consensus 194 ~~~~~~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~ 273 (357)
T 3rrk_A 194 KRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVAR 273 (357)
T ss_dssp EGGGHHHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EHHHHHHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999998777 999999999999999999999999999999999899999999999999999
Q ss_pred HHHhccccccccCcEEEEEEEeecCCHHHHHHHHHhhhhcCCCceEEEEEecCCC---CCCCcccccccchhhHHHHHHh
Q 003392 330 YHTLNMLSLDVTKKCLVGEGWSPVFATKQIQDALERAAFDSNSQVGAIFQVLHTK---ESPPTYFRTNKFTSAFQEIVDA 406 (823)
Q Consensus 330 ~~~l~~~~~~~t~~~~~~~GWvP~~~~~~l~~~l~~~~~~~~~~v~~~~~~~~~~---~~pPt~l~n~~~~~pFe~iv~~ 406 (823)
|++++ .++.|+++++++||||++++++++++|++ ++ ..+.+.+.+++++ +.|||+++||+|++|||.||+|
T Consensus 274 ~~~~~--~~~~~~~~~~~~gWvp~~~~~~~~~~l~~-~~---~~~~~~~~~~~~~~~~~~pPt~l~n~~~~~~fe~iv~~ 347 (357)
T 3rrk_A 274 YKAVA--DMAAGKYGAALMGWVPQKAKGKVEEALGR-LR---DQIVYTFEPVDEHHESHQVPVTLENPAWAKPFELLHGF 347 (357)
T ss_dssp HHHHH--HHHTTCCSEEEEEEECTTTHHHHHHTCCS-SC---EEEEC---------------------------------
T ss_pred HHHHH--hhcccCcEEEEEEEeeHHHHHHHHHHHHh-cC---CceEEEEecCCccccCCCcCEeccCCchhhHHHHHHHh
Confidence 99999 56788999999999999999999999997 42 3556667777666 6899999999999999999999
Q ss_pred ccCCCCCccC
Q 003392 407 YGVAKYREAN 416 (823)
Q Consensus 407 Yg~P~Y~EiD 416 (823)
||+|+|+|+|
T Consensus 348 Yg~p~Y~EiD 357 (357)
T 3rrk_A 348 LNTPAYGSHD 357 (357)
T ss_dssp ----------
T ss_pred cCCCCCCCCC
Confidence 9999999998
|
| >2jtw_A Transmembrane helix 7 of yeast vATPase; peptide, micelle-bound, membrane protein; NMR {Synthetic} PDB: 2rpw_X | Back alignment and structure |
|---|
| >1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00