Citrus Sinensis ID: 003404

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820---
MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKHPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSIKKRIYVPGRILNVILDRQNIKASVR
cccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccEEEEEcccccccccccEEEccccccccccccccccEEEEcccccHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccEEEEEEccccccccccEEEEEcccccccccccEEEEccccHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHccccccccccccEEcccccccccEEEEEccccccccccEEEccccccccHHHHHHccccEEEEEccccccccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHccccccEEEEEcccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccHHHHHHHHHcccccccccccHHHHcccccccccHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEcccccEEccccccccccccccccccHHHcccccEEEEcccccEEEEEcEEEccccccccccHHHHHHHHccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccHHHHHccEEEEEEEccEEEEEEEEcccccHHHHHHHHcccHHHHHHHcccccEEEEEEcccEEEEEEcccccccccc
ccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHEccccccHcHHHHHHHHHHHHcccEEEEEcEEcccccccEEEEccEEEccccccccccEEEccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccEEEEEEEEcccccccccEEEEEEcccccEEEEEEEEEccccHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHccccccccccEEEccccccccEEEEEEEEEEcccccEEEEcccccHHHHHHHHHccccEEEEEEcccccccHHHHHcccccEEEccccEEcccccccccHHHHHHHHHHHHHHccccccEEEEEHHHHHHHHHHcccccccEEEccccccEEEccHHcccEEccccEEEcccccccccHHHcHHHHccccccccccccccccccccHccccEEEEEEcccccccccccHHHHHccccccHEccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccEEEEEEEEccccccccEEEcHHHccccccccccEEEHHHcccccccEEEccccccEEEcccccccccccccccHHHHHHHccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccHHHHHccEEEEEEEEccEEEEEEEEcccccHHHHHHHHHccHHHHHHHcccEEEEEEEEcccEEEEEEccccEEEEcc
mqgynvlhpmgwdafglpaeqyaietgthpkittLRNINRFRTQLKSLGfsydwnreistiepayyKWTQWIFLQLLKRGLAyqaevpvnwcpalgtvlaneevvdgvsergghpvirkpMRQWMLKITEYADRLLddlddldwpeSVKEMQRNWigrsegaemdfrvldsdgqerdikitvyttrpdtifGATYLvvapehpllsSLVSTTQSQNIEEYKNLasrksdlertelqkektgvfsgcyarnpasgeaiPIWVADYVlgsygtgaimavpahdtrdheFALKFDISIhsvvmpddesssqsekaytgeglivnssnlisgldinglscQEATSKVIEWAEKtgngkkkvnYKLRDWLFARQRywgepipvvfldgtgetvplheaelpltlpelddftptgtgepplskaVSWVQttehssgkparretstmpqwagsCWYYlrfmdpknskeLVDKtkerywspvdvyvgGAEHAVLHLLYARFWHKVLYDIgvvstkepfkcvinqgiilgEMQYMVCKdvdgsyisadstdtlgeyeqesipeekvmksgdffvmkdnpnIRLIARAHKMsksrgnvvnpddvvteygADSLRLYEMFmgpfrdsktwntsgiegVHRFLGRMWRLivgsslpdgtfkggtvvndeeptlEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYkwekhprkiIEPFILLlapyaphmsEELWFRLghsnslayesfpkanpdylkdstivlpiqingktrgtiqveegcseEEAFKLASLDEKLSKFldgksikkriyvpgrILNVILDRqnikasvr
MQGYNVLHPMGWDAFGLPAEQYAIETGthpkittlrnINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDgvsergghpvirkpmrqWMLKITEYADRLLDDLDDLDWPESVKEMqrnwigrsegaemdfrvldsdgqerdIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYknlasrksdlertelqkektgvfsgcyarnpasGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEwaektgngkkkvnyKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTtehssgkparretstmpqWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEqesipeekvmksgdFFVMKDNPNIRLIARAHkmsksrgnvvnpddvVTEYGADSLRLYEMFMGPfrdsktwntSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKHPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSkfldgksikkriyvpgrilnvildrqnikasvr
MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYAdrllddlddldWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPllsslvsttqsqNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKHPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSIKKRIYVPGRILNVILDRQNIKASVR
***YNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSL********************************GVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVV**************TGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLP*****************************************QWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISA***********************DFFVMKDNPNIRLIARA********NVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKHPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSIKKRIYVPGRILNVILDR********
MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDG***********EPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKHPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSIKKRIYVPGRILNVILDRQ*******
MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVV*************YTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPL*************************PQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKHPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSIKKRIYVPGRILNVILDRQNIKASVR
***YNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKHPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSIKKRIYVPGRILNVILDRQNIKAS*R
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKHPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSIKKRIYVPGRILNVILDRQNIKASVR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query823 2.2.26 [Sep-21-2011]
Q2S415863 Leucine--tRNA ligase OS=S yes no 0.962 0.917 0.579 0.0
B7GK53805 Leucine--tRNA ligase OS=A yes no 0.896 0.916 0.550 0.0
Q9K7S8806 Leucine--tRNA ligase OS=B yes no 0.896 0.915 0.540 0.0
C0ZB13805 Leucine--tRNA ligase OS=B yes no 0.895 0.915 0.531 0.0
B1HXY7805 Leucine--tRNA ligase OS=L yes no 0.896 0.916 0.531 0.0
C5D6D7805 Leucine--tRNA ligase OS=G yes no 0.896 0.916 0.549 0.0
A4IRY3805 Leucine--tRNA ligase OS=G yes no 0.896 0.916 0.543 0.0
A8FGG0804 Leucine--tRNA ligase OS=B yes no 0.893 0.914 0.535 0.0
P36430804 Leucine--tRNA ligase OS=B yes no 0.895 0.916 0.536 0.0
Q8EP12804 Leucine--tRNA ligase OS=O yes no 0.893 0.914 0.533 0.0
>sp|Q2S415|SYL_SALRD Leucine--tRNA ligase OS=Salinibacter ruber (strain DSM 13855 / M31) GN=leuS PE=3 SV=1 Back     alignment and function desciption
 Score =  980 bits (2533), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/811 (57%), Positives = 601/811 (74%), Gaps = 19/811 (2%)

Query: 2   QGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTI 61
           QG+NVLHPMGWDAFGLPAEQYA++T THP+ TT +NI +F+ QLK LGFSYDW REI+T 
Sbjct: 70  QGFNVLHPMGWDAFGLPAEQYALKTNTHPRETTEKNIAQFKRQLKRLGFSYDWQREINTT 129

Query: 62  EPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPM 121
           +P YYKWTQWIFLQL ++GLAYQ+E PV WC  LGTVLANEEV+DG SERGG+P  R PM
Sbjct: 130 DPDYYKWTQWIFLQLYEKGLAYQSEEPVWWCEELGTVLANEEVIDGKSERGGYPCERVPM 189

Query: 122 RQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKIT 181
           RQW+LKITEYADRLL+ L+DLDWPES KEMQRNWIGRSEGA + F ++ +D       + 
Sbjct: 190 RQWVLKITEYADRLLEGLEDLDWPESTKEMQRNWIGRSEGANVYFDLVGADD-----ALE 244

Query: 182 VYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTG 241
           VYTTRPDT+FGATY+V+APEH LL  + +    ++++EY   A RKS+ +R + Q +KTG
Sbjct: 245 VYTTRPDTLFGATYMVLAPEHELLDEITTDEHREDVDEYCRQALRKSERKRQQ-QGDKTG 303

Query: 242 VFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMP 301
           VF+G YA NP +GE IPIWVADYVL SYGTGAIMAVPAHD RDH FA K+D+ I  VV  
Sbjct: 304 VFTGGYAVNPVNGEEIPIWVADYVLVSYGTGAIMAVPAHDERDHAFANKYDLPIREVV-- 361

Query: 302 DDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKL 361
             E     E+AYTG+G  V+S+N    + +NGL  +EA   + EW ++   G++ VNY+L
Sbjct: 362 --EGGDIDEEAYTGDGPHVHSAN--EAVSLNGLRNEEAKEAITEWLDEEEKGERTVNYQL 417

Query: 362 RDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSW 421
           +DWLF+RQRYWGEP P+VF +  GE  P+ E ELP+TLP+LD F P+GT E PL+    W
Sbjct: 418 QDWLFSRQRYWGEPFPIVFTED-GEDKPVPEEELPVTLPDLDVFEPSGTPEGPLATIEDW 476

Query: 422 VQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGA 481
            +TT+  +G+PA+RET+TMPQWAGSCWYYLRF+DP N ++LVD  KE YW PVD+YVGG+
Sbjct: 477 RETTDPETGEPAQRETNTMPQWAGSCWYYLRFIDPDNDEQLVDPEKEEYWMPVDLYVGGS 536

Query: 482 EHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADST 541
           EHAVLHLLYARFWHKVLYD GVVSTKEPF+ +++QG+ILGE +Y   +D  G ++SA+  
Sbjct: 537 EHAVLHLLYARFWHKVLYDAGVVSTKEPFQTLVHQGMILGETEYTAYRDDAGEFVSAEQV 596

Query: 542 DTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGAD 601
           D   +     + +  V K GD FV+ D P +R+ AR+HKMSKSRGNV+NPDDVV EYGAD
Sbjct: 597 DDDADLTPVPVDDGDVKKDGDVFVLADRPAVRVDARSHKMSKSRGNVINPDDVVDEYGAD 656

Query: 602 SLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTL 661
           +LRLYEMFMGP    K W+T  +EGVHRFL R+WRL+V +        GG  V+DEEP  
Sbjct: 657 TLRLYEMFMGPLEQDKPWSTDDMEGVHRFLNRIWRLVVDAD------SGGLAVSDEEPDR 710

Query: 662 EQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKHPRKIIEPFILLLAPYAPH 721
           EQL TLH+ I  VTE+IE   FNT I+AMMEF+NAA KW+  PR++  PF+LLL+P+APH
Sbjct: 711 EQLRTLHRTIKTVTEDIEARDFNTAIAAMMEFVNAANKWDALPRQVATPFVLLLSPFAPH 770

Query: 722 MSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFK 781
           ++EELW RLGH  SLAY  +P  + + ++   + +P+Q++G  R TI+V     E +   
Sbjct: 771 LAEELWARLGHDQSLAYADWPAYDDELIRREVVEMPVQVDGTVRATIEVAADAEEADVLA 830

Query: 782 LASLDEKLSKFLDGKSIKKRIYVPGRILNVI 812
            A   E +++ LD + +++ IYVPG+I+N +
Sbjct: 831 TAKEAENVARHLDDEDLQREIYVPGQIVNFV 861

Salinibacter ruber (strain DSM 13855 / M31) (taxid: 309807)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 4
>sp|B7GK53|SYL_ANOFW Leucine--tRNA ligase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=leuS PE=3 SV=1 Back     alignment and function description
>sp|Q9K7S8|SYL_BACHD Leucine--tRNA ligase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=leuS PE=3 SV=1 Back     alignment and function description
>sp|C0ZB13|SYL_BREBN Leucine--tRNA ligase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=leuS PE=3 SV=1 Back     alignment and function description
>sp|B1HXY7|SYL_LYSSC Leucine--tRNA ligase OS=Lysinibacillus sphaericus (strain C3-41) GN=leuS PE=3 SV=1 Back     alignment and function description
>sp|C5D6D7|SYL_GEOSW Leucine--tRNA ligase OS=Geobacillus sp. (strain WCH70) GN=leuS PE=3 SV=1 Back     alignment and function description
>sp|A4IRY3|SYL_GEOTN Leucine--tRNA ligase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=leuS PE=3 SV=2 Back     alignment and function description
>sp|A8FGG0|SYL_BACP2 Leucine--tRNA ligase OS=Bacillus pumilus (strain SAFR-032) GN=leuS PE=3 SV=2 Back     alignment and function description
>sp|P36430|SYL_BACSU Leucine--tRNA ligase OS=Bacillus subtilis (strain 168) GN=leuS PE=3 SV=3 Back     alignment and function description
>sp|Q8EP12|SYL_OCEIH Leucine--tRNA ligase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=leuS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query823
356522021 972 PREDICTED: leucyl-tRNA synthetase-like [ 0.998 0.845 0.842 0.0
225444321 971 PREDICTED: leucyl-tRNA synthetase [Vitis 1.0 0.847 0.845 0.0
147773742893 hypothetical protein VITISV_036142 [Viti 1.0 0.921 0.845 0.0
224115854 974 predicted protein [Populus trichocarpa] 1.0 0.844 0.848 0.0
255554793 960 leucyl-tRNA synthetase, putative [Ricinu 1.0 0.857 0.837 0.0
357497939 1009 Leucyl-tRNA synthetase [Medicago truncat 1.0 0.815 0.784 0.0
15233478 973 leucyl-tRNA synthetase [Arabidopsis thal 1.0 0.845 0.794 0.0
449479692 1059 PREDICTED: leucine--tRNA ligase-like [Cu 0.997 0.775 0.823 0.0
449434392 978 PREDICTED: leucine--tRNA ligase-like [Cu 0.997 0.839 0.823 0.0
297809613 972 EMB2369 [Arabidopsis lyrata subsp. lyrat 1.0 0.846 0.792 0.0
>gi|356522021|ref|XP_003529648.1| PREDICTED: leucyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
 Score = 1436 bits (3717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 693/823 (84%), Positives = 760/823 (92%), Gaps = 1/823 (0%)

Query: 1   MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREIST 60
           MQGYNVLHPMGWDAFGLPAEQYAIETGTHPK+TT+RNINRFRTQLKSLGFSYDW+RE+ST
Sbjct: 151 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKLTTVRNINRFRTQLKSLGFSYDWDREVST 210

Query: 61  IEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKP 120
           IEP YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEV+DGVSERGGHPVIRKP
Sbjct: 211 IEPDYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVIDGVSERGGHPVIRKP 270

Query: 121 MRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKI 180
           MRQWMLKIT YADRLL+DLDDLDWPESVKEMQRNWIGRSEGAEM+F +LDSDG+ERDI I
Sbjct: 271 MRQWMLKITAYADRLLEDLDDLDWPESVKEMQRNWIGRSEGAEMEFCILDSDGKERDITI 330

Query: 181 TVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKT 240
            VYTTRPDTIFGATYLVVAPEHPLLSSLVS  QS+++E+Y +LASRKSDLERTELQKEKT
Sbjct: 331 IVYTTRPDTIFGATYLVVAPEHPLLSSLVSIAQSKHVEDYVDLASRKSDLERTELQKEKT 390

Query: 241 GVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVM 300
           GVF+GCYA+NPA+GEAIPIWVADYVLGSYGTGAIMAVPAHD+RD+EFALK+D+ I  VVM
Sbjct: 391 GVFTGCYAKNPANGEAIPIWVADYVLGSYGTGAIMAVPAHDSRDYEFALKYDVPICWVVM 450

Query: 301 PDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYK 360
           PDD+S  +S KA++GEG IVNSSN + GLDINGLS  EA  KVIEWAEK+GNGK+KVNYK
Sbjct: 451 PDDKSI-ESGKAFSGEGTIVNSSNTLVGLDINGLSSNEAALKVIEWAEKSGNGKRKVNYK 509

Query: 361 LRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVS 420
           LRDWLFARQRYWGEPIPV+FLD + ETVPL E ELPL LPELDDF+PTGTGEPPLSKAVS
Sbjct: 510 LRDWLFARQRYWGEPIPVIFLDDSDETVPLCETELPLILPELDDFSPTGTGEPPLSKAVS 569

Query: 421 WVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGG 480
           WV+TT+  SG+PA RET+TMPQWAGSCWYYLRFMDP NSKELVDKTKERYW PVDVYVGG
Sbjct: 570 WVKTTDSLSGRPATRETNTMPQWAGSCWYYLRFMDPHNSKELVDKTKERYWGPVDVYVGG 629

Query: 481 AEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADS 540
           AEHAVLHLLYARFWHKVL+DIGVVSTKEPF+CVINQGIILGE+QYM C+D  G+ ISADS
Sbjct: 630 AEHAVLHLLYARFWHKVLFDIGVVSTKEPFQCVINQGIILGEVQYMTCRDQVGNLISADS 689

Query: 541 TDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGA 600
           TD L E++ E IP EKVMKSGD FV+K++P+IRL ARAHKMSKSRGNVVNPDDVV+EYGA
Sbjct: 690 TDMLNEHKLEIIPAEKVMKSGDSFVLKEHPDIRLFARAHKMSKSRGNVVNPDDVVSEYGA 749

Query: 601 DSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPT 660
           DSLRLYEMFMGP RDSKTW+TSGIEGVHRFLGR WRLIVGS L DGTFK  TV  DEEPT
Sbjct: 750 DSLRLYEMFMGPLRDSKTWSTSGIEGVHRFLGRTWRLIVGSPLSDGTFKDRTVSVDEEPT 809

Query: 661 LEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKHPRKIIEPFILLLAPYAP 720
           +EQL  LHKCIAKVTEEIEGTRFNTGISAMMEF+NAAYKW+KHPR +IE F+LLL+PYAP
Sbjct: 810 IEQLRCLHKCIAKVTEEIEGTRFNTGISAMMEFLNAAYKWDKHPRSVIEAFVLLLSPYAP 869

Query: 721 HMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAF 780
           HM+EELW RLGH+ SLAYE FPKANP YLKDST+VLP+QINGKTRGTIQVEE C+EE+AF
Sbjct: 870 HMAEELWSRLGHTKSLAYEPFPKANPAYLKDSTVVLPVQINGKTRGTIQVEETCTEEDAF 929

Query: 781 KLASLDEKLSKFLDGKSIKKRIYVPGRILNVILDRQNIKASVR 823
            LAS DEKLSK+LDG+S+KKRIYVPG+ILNV+LDR+NIK  V+
Sbjct: 930 VLASRDEKLSKYLDGQSVKKRIYVPGKILNVVLDRKNIKVGVQ 972

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225444321|ref|XP_002264138.1| PREDICTED: leucyl-tRNA synthetase [Vitis vinifera] gi|302144097|emb|CBI23202.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147773742|emb|CAN74190.1| hypothetical protein VITISV_036142 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224115854|ref|XP_002317141.1| predicted protein [Populus trichocarpa] gi|222860206|gb|EEE97753.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255554793|ref|XP_002518434.1| leucyl-tRNA synthetase, putative [Ricinus communis] gi|223542279|gb|EEF43821.1| leucyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357497939|ref|XP_003619258.1| Leucyl-tRNA synthetase [Medicago truncatula] gi|355494273|gb|AES75476.1| Leucyl-tRNA synthetase [Medicago truncatula] Back     alignment and taxonomy information
>gi|15233478|ref|NP_192344.1| leucyl-tRNA synthetase [Arabidopsis thaliana] gi|4982478|gb|AAD36946.1|AF069441_6 putative leucyl tRNA synthetase [Arabidopsis thaliana] gi|7267192|emb|CAB77903.1| putative leucyl tRNA synthetase [Arabidopsis thaliana] gi|19310531|gb|AAL84999.1| AT4g04350/T19B17_7 [Arabidopsis thaliana] gi|25090241|gb|AAN72260.1| At4g04350/T19B17_7 [Arabidopsis thaliana] gi|332656983|gb|AEE82383.1| leucyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449479692|ref|XP_004155678.1| PREDICTED: leucine--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449434392|ref|XP_004134980.1| PREDICTED: leucine--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297809613|ref|XP_002872690.1| EMB2369 [Arabidopsis lyrata subsp. lyrata] gi|297318527|gb|EFH48949.1| EMB2369 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query823
TAIR|locus:2134887973 EMB2369 "EMBRYO DEFECTIVE 2369 1.0 0.845 0.777 0.0
TIGR_CMR|BA_4991802 BA_4991 "leucyl-tRNA synthetas 0.645 0.662 0.601 2.6e-230
TIGR_CMR|DET_0194813 DET_0194 "leucyl-tRNA syntheta 0.639 0.646 0.459 3.6e-174
TIGR_CMR|CHY_0393821 CHY_0393 "leucyl-tRNA syntheta 0.614 0.616 0.502 5.9e-174
UNIPROTKB|P67510969 leuS "Leucine--tRNA ligase" [M 0.854 0.725 0.429 4.8e-170
TIGR_CMR|CBU_0559820 CBU_0559 "leucyl-tRNA syntheta 0.608 0.610 0.449 4.9e-155
POMBASE|SPAC4G8.09874 SPAC4G8.09 "mitochondrial leuc 0.646 0.608 0.338 1.9e-136
TIGR_CMR|SPO_3432852 SPO_3432 "leucyl-tRNA syntheta 0.611 0.590 0.403 8.7e-132
TIGR_CMR|NSE_0506831 NSE_0506 "leucyl-tRNA syntheta 0.668 0.661 0.382 1.5e-121
TIGR_CMR|GSU_2209824 GSU_2209 "leucyl-tRNA syntheta 0.716 0.716 0.415 1.2e-120
TAIR|locus:2134887 EMB2369 "EMBRYO DEFECTIVE 2369" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3488 (1232.9 bits), Expect = 0., P = 0.
 Identities = 640/823 (77%), Positives = 722/823 (87%)

Query:     1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREIST 60
             MQGYNVLHPMGWDAFGLPAEQYAIETGTHPK TTL+NI+RFR QLKSLGFSYDW+RE+ST
Sbjct:   151 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKTTTLKNIDRFRLQLKSLGFSYDWDRELST 210

Query:    61 IEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKP 120
              EP YYKWTQWIFLQL K+GLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKP
Sbjct:   211 TEPDYYKWTQWIFLQLYKKGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKP 270

Query:   121 MRQWMLKITEYAXXXXXXXXXXXWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKI 180
             MRQWMLKIT YA           WPES+KEMQRNWIGRSEGAE++F +LD +G+E D +I
Sbjct:   271 MRQWMLKITAYADRLLEDLDELEWPESIKEMQRNWIGRSEGAELNFSILDGEGRETDKEI 330

Query:   181 TVYTTRPDTIFGATYLVVAPEHPXXXXXXXXXXXXNIEEYKNLASRKSDLERTELQKEKT 240
             TVYTTRPDT+FGATY+VVAPEH              +EEYK+ ASRKSDLERTELQK+KT
Sbjct:   331 TVYTTRPDTLFGATYMVVAPEHQLLSYFVTAEQKQQVEEYKDFASRKSDLERTELQKDKT 390

Query:   241 GVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVM 300
             GVF+GCYA+NPA+G+AIPIWVADYVL SYGTGAIMAVPAHDTRD+EFALK++I I  VV 
Sbjct:   391 GVFTGCYAKNPANGDAIPIWVADYVLASYGTGAIMAVPAHDTRDNEFALKYNIPIKWVVR 450

Query:   301 PDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYK 360
              +  SS  +++ Y G G+I NSS L +GLDIN LS +EA  KVIEWAE+TGNGKKKVNYK
Sbjct:   451 NEANSSDDAKQVYPGLGIIENSSTLETGLDINQLSSKEAALKVIEWAERTGNGKKKVNYK 510

Query:   361 LRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVS 420
             LRDWLFARQRYWGEPIP++ LD +GET+ + E+ELPLTLPEL+DFTPTGTGEPPLSKAVS
Sbjct:   511 LRDWLFARQRYWGEPIPILILDESGETIAISESELPLTLPELNDFTPTGTGEPPLSKAVS 570

Query:   421 WVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGG 480
             WV T + S+GKPA+RETSTMPQWAGSCWYYLRFMDPKN + LVDK KE+YWSPVDVYVGG
Sbjct:   571 WVNTVDPSTGKPAKRETSTMPQWAGSCWYYLRFMDPKNPEALVDKEKEKYWSPVDVYVGG 630

Query:   481 AEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADS 540
             AEHAVLHLLY+RFWHKVLYDIGVVSTKEPFKCVINQGIILGE+QY   KD +G+Y+SAD+
Sbjct:   631 AEHAVLHLLYSRFWHKVLYDIGVVSTKEPFKCVINQGIILGEVQYTAWKDQEGNYVSADT 690

Query:   541 TDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGA 600
              + L E++Q +IPEEKV+KSGD FV+K++P+IRLI R +KMSKSRGNVVNPDDVV EYGA
Sbjct:   691 EERLNEHQQVTIPEEKVIKSGDHFVLKEDPSIRLIPRVYKMSKSRGNVVNPDDVVLEYGA 750

Query:   601 DSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPT 660
             DSLRLYEMFMGPFRDSKTWNTSGIEGVHRFL R WRL++G    DG+FK GT+V D+EPT
Sbjct:   751 DSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLARTWRLVIGLPQSDGSFKDGTLVTDDEPT 810

Query:   661 LEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKHPRKIIEPFILLLAPYAP 720
             LEQL TLHKCIAKVTEEIE TRFNTGIS MMEF+NAAYKW   PR IIEPF+LLL+PYAP
Sbjct:   811 LEQLRTLHKCIAKVTEEIESTRFNTGISGMMEFVNAAYKWNNQPRGIIEPFVLLLSPYAP 870

Query:   721 HMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAF 780
             HM+EELW RLGH NSLAYESFPKANPDYLK++TIVLP+QINGKTRGTI+VEEGCSE++AF
Sbjct:   871 HMAEELWSRLGHPNSLAYESFPKANPDYLKNTTIVLPVQINGKTRGTIEVEEGCSEDDAF 930

Query:   781 KLASLDEKLSKFLDGKSIKKRIYVPGRILNVILDRQNIKASVR 823
              LAS D+KL K+LDG+SIKKRIYVPG+ILNVILDR N+K + +
Sbjct:   931 VLASQDDKLRKYLDGQSIKKRIYVPGKILNVILDRTNVKVTTK 973
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA;ISS
GO:0004823 "leucine-tRNA ligase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA;ISS
GO:0006429 "leucyl-tRNA aminoacylation" evidence=IEA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP;NAS
GO:0009507 "chloroplast" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA
GO:0006399 "tRNA metabolic process" evidence=RCA
GO:0009658 "chloroplast organization" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0010103 "stomatal complex morphogenesis" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016226 "iron-sulfur cluster assembly" evidence=RCA
GO:0016556 "mRNA modification" evidence=RCA
GO:0048481 "ovule development" evidence=RCA
TIGR_CMR|BA_4991 BA_4991 "leucyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0194 DET_0194 "leucyl-tRNA synthetase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0393 CHY_0393 "leucyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|P67510 leuS "Leucine--tRNA ligase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0559 CBU_0559 "leucyl-tRNA synthetase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
POMBASE|SPAC4G8.09 SPAC4G8.09 "mitochondrial leucine-tRNA ligase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3432 SPO_3432 "leucyl-tRNA synthetase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0506 NSE_0506 "leucyl-tRNA synthetase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2209 GSU_2209 "leucyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q92AZ9SYL_LISIN6, ., 1, ., 1, ., 40.52450.89550.9178yesno
A9VLA2SYL_BACWK6, ., 1, ., 1, ., 40.52760.89300.9164yesno
Q1MFI6SYL1_RHIL36, ., 1, ., 1, ., 40.52020.93430.9176yesno
C0M8N3SYL_STRE46, ., 1, ., 1, ., 40.51410.92460.9135yesno
B4U0A1SYL_STREM6, ., 1, ., 1, ., 40.51160.92460.9135yesno
Q8DS85SYL_STRMU6, ., 1, ., 1, ., 40.51900.92460.9135yesno
B7HSS7SYL_BACC76, ., 1, ., 1, ., 40.52820.89420.9177yesno
Q5KW09SYL_GEOKA6, ., 1, ., 1, ., 40.53490.89670.9167yesno
Q837N5SYL_ENTFA6, ., 1, ., 1, ., 40.52510.89300.9141yesno
A8FGG0SYL_BACP26, ., 1, ., 1, ., 40.53500.89300.9141yesno
B9J1E1SYL_BACCQ6, ., 1, ., 1, ., 40.52820.89420.9177yesno
Q81KK6SYL_BACAN6, ., 1, ., 1, ., 40.52700.89420.9177yesno
Q9K7S8SYL_BACHD6, ., 1, ., 1, ., 40.54040.89670.9156yesno
B5E6T0SYL_STRP46, ., 1, ., 1, ., 40.51280.92460.9135yesno
Q816T0SYL_BACCR6, ., 1, ., 1, ., 40.52820.89420.9177yesno
Q5HNF1SYL_STAEQ6, ., 1, ., 1, ., 40.51410.89300.9141yesno
Q4L7A3SYL_STAHJ6, ., 1, ., 1, ., 40.52020.89300.9141yesno
Q5M657SYL_STRT26, ., 1, ., 1, ., 40.51280.92460.9135yesno
Q72YY8SYL_BACC16, ., 1, ., 1, ., 40.52820.89420.9177yesno
A3CKP1SYL_STRSV6, ., 1, ., 1, ., 40.51280.92460.9135yesno
C3LAX2SYL_BACAC6, ., 1, ., 1, ., 40.52700.89420.9177yesno
Q97SS0SYL_STRPN6, ., 1, ., 1, ., 40.50920.92460.9135yesno
Q632V2SYL_BACCZ6, ., 1, ., 1, ., 40.52700.89420.9177yesno
C3PBK0SYL_BACAA6, ., 1, ., 1, ., 40.52700.89420.9177yesno
B1HXY7SYL_LYSSC6, ., 1, ., 1, ., 40.53130.89670.9167yesno
A0RJX2SYL_BACAH6, ., 1, ., 1, ., 40.52700.89420.9177yesno
A8AZ43SYL_STRGC6, ., 1, ., 1, ., 40.50920.92460.9135N/Ano
Q2S415SYL_SALRD6, ., 1, ., 1, ., 40.57950.96230.9177yesno
B7GK53SYL_ANOFW6, ., 1, ., 1, ., 40.55090.89670.9167yesno
A7GU19SYL_BACCN6, ., 1, ., 1, ., 40.52880.89300.9164yesno
B9E7H4SYL_MACCJ6, ., 1, ., 1, ., 40.52870.89180.9152yesno
P36430SYL_BACSU6, ., 1, ., 1, ., 40.53610.89550.9166yesno
B7IL05SYL_BACC26, ., 1, ., 1, ., 40.52880.89300.9164yesno
C5D6D7SYL_GEOSW6, ., 1, ., 1, ., 40.54960.89670.9167yesno
Q8CNU8SYL_STAES6, ., 1, ., 1, ., 40.51410.89300.9141yesno
Q49YI8SYL_STAS16, ., 1, ., 1, ., 40.51660.89300.9141yesno
A7Z7V7SYL_BACA26, ., 1, ., 1, ., 40.53740.89550.9166yesno
Q03MJ2SYL_STRTD6, ., 1, ., 1, ., 40.51280.92460.9135yesno
Q65FX8SYL_BACLD6, ., 1, ., 1, ., 40.53120.89550.9166yesno
B7H798SYL_BACC46, ., 1, ., 1, ., 40.52700.89420.9177yesno
Q6HCE2SYL_BACHK6, ., 1, ., 1, ., 40.52700.89420.9177yesno
A4IRY3SYL_GEOTN6, ., 1, ., 1, ., 40.54350.89670.9167yesno
C0MET9SYL_STRS76, ., 1, ., 1, ., 40.51650.92460.9135N/Ano
B1YKH4SYL_EXIS26, ., 1, ., 1, ., 40.52330.88820.9126yesno
C0ZB13SYL_BREBN6, ., 1, ., 1, ., 40.53190.89550.9155yesno
B7JT07SYL_BACC06, ., 1, ., 1, ., 40.52700.89420.9177yesno
B1I8Y2SYL_STRPI6, ., 1, ., 1, ., 40.51280.92460.9135yesno
Q73K81SYL_TREDE6, ., 1, ., 1, ., 40.53470.94770.9090yesno
Q8EP12SYL_OCEIH6, ., 1, ., 1, ., 40.53380.89300.9141yesno
C1EW09SYL_BACC36, ., 1, ., 1, ., 40.52700.89420.9177yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.40.946
3rd Layer6.1.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query823
PLN02563963 PLN02563, PLN02563, aminoacyl-tRNA ligase 0.0
TIGR00396842 TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba 0.0
PRK00390805 PRK00390, leuS, leucyl-tRNA synthetase; Validated 0.0
COG0495814 COG0495, LeuS, Leucyl-tRNA synthetase [Translation 0.0
PRK00390805 PRK00390, leuS, leucyl-tRNA synthetase; Validated 9e-99
pfam13603178 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, 1e-73
cd00812314 cd00812, LeuRS_core, catalytic core domain of leuc 3e-62
COG0525877 COG0525, ValS, Valyl-tRNA synthetase [Translation, 1e-60
TIGR00422861 TIGR00422, valS, valyl-tRNA synthetase 9e-54
cd07958117 cd07958, Anticodon_Ia_Leu_BEm, Anticodon-binding d 4e-42
cd00812314 cd00812, LeuRS_core, catalytic core domain of leuc 2e-40
TIGR00392861 TIGR00392, ileS, isoleucyl-tRNA synthetase 3e-35
COG0060933 COG0060, IleS, Isoleucyl-tRNA synthetase [Translat 2e-32
pfam00133606 pfam00133, tRNA-synt_1, tRNA synthetases class I ( 5e-32
cd00817382 cd00817, ValRS_core, catalytic core domain of valy 2e-31
PRK13208800 PRK13208, valS, valyl-tRNA synthetase; Reviewed 1e-25
cd00668312 cd00668, Ile_Leu_Val_MetRS_core, catalytic core do 1e-20
PRK06039 975 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewe 8e-19
PRK12300897 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed 4e-18
pfam08264148 pfam08264, Anticodon_1, Anticodon-binding domain o 3e-17
TIGR00395938 TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch 4e-16
cd00814319 cd00814, MetRS_core, catalytic core domain of meth 6e-16
PTZ00419 995 PTZ00419, PTZ00419, valyl-tRNA synthetase-like pro 9e-16
PRK13208800 PRK13208, valS, valyl-tRNA synthetase; Reviewed 3e-15
TIGR00395938 TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch 6e-15
cd00818338 cd00818, IleRS_core, catalytic core domain of isol 1e-14
PRK12300897 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed 4e-14
COG0143558 COG0143, MetG, Methionyl-tRNA synthetase [Translat 9e-14
PRK14900 1052 PRK14900, valS, valyl-tRNA synthetase; Provisional 1e-13
pfam09334388 pfam09334, tRNA-synt_1g, tRNA synthetases class I 2e-13
PRK05729874 PRK05729, valS, valyl-tRNA synthetase; Reviewed 7e-13
PRK05743912 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewe 7e-12
PLN02843 974 PLN02843, PLN02843, isoleucyl-tRNA synthetase 3e-11
cd00817382 cd00817, ValRS_core, catalytic core domain of valy 1e-10
PRK05729874 PRK05729, valS, valyl-tRNA synthetase; Reviewed 1e-10
PRK12268556 PRK12268, PRK12268, methionyl-tRNA synthetase; Rev 1e-10
PRK11893511 PRK11893, PRK11893, methionyl-tRNA synthetase; Rev 5e-10
PRK06039975 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewe 1e-09
PLN02943958 PLN02943, PLN02943, aminoacyl-tRNA ligase 1e-09
COG0143558 COG0143, MetG, Methionyl-tRNA synthetase [Translat 2e-09
PRK12268556 PRK12268, PRK12268, methionyl-tRNA synthetase; Rev 3e-09
PLN023811066 PLN02381, PLN02381, valyl-tRNA synthetase 7e-09
PRK12300897 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed 1e-08
PRK12267648 PRK12267, PRK12267, methionyl-tRNA synthetase; Rev 1e-08
PRK11893511 PRK11893, PRK11893, methionyl-tRNA synthetase; Rev 2e-08
TIGR00398530 TIGR00398, metG, methionyl-tRNA synthetase 4e-08
cd00668312 cd00668, Ile_Leu_Val_MetRS_core, catalytic core do 2e-07
PRK05743912 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewe 2e-07
cd00818338 cd00818, IleRS_core, catalytic core domain of isol 3e-07
pfam00133606 pfam00133, tRNA-synt_1, tRNA synthetases class I ( 4e-07
cd00814319 cd00814, MetRS_core, catalytic core domain of meth 6e-07
PRK14900 1052 PRK14900, valS, valyl-tRNA synthetase; Provisional 1e-06
PRK13804961 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisi 1e-06
PRK13804961 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisi 1e-06
pfam09334388 pfam09334, tRNA-synt_1g, tRNA synthetases class I 5e-06
TIGR00398530 TIGR00398, metG, methionyl-tRNA synthetase 1e-05
cd07959117 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding d 1e-05
PRK05729874 PRK05729, valS, valyl-tRNA synthetase; Reviewed 1e-04
cd07962135 cd07962, Anticodon_Ia_Val, Anticodon-binding domai 3e-04
PLN02943958 PLN02943, PLN02943, aminoacyl-tRNA ligase 5e-04
PLN02882 1159 PLN02882, PLN02882, aminoacyl-tRNA ligase 5e-04
PRK06039975 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewe 0.001
cd07961183 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding 0.001
PRK00133673 PRK00133, metG, methionyl-tRNA synthetase; Reviewe 0.002
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase Back     alignment and domain information 
 Score = 1655 bits (4287), Expect = 0.0
 Identities = 675/820 (82%), Positives = 746/820 (90%), Gaps = 2/820 (0%)

Query: 1   MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREIST 60
           MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTL+NI RFR+QLKSLGFSYDW+REIST
Sbjct: 146 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKSLGFSYDWDREIST 205

Query: 61  IEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKP 120
            EP YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG+SERGGHPVIRKP
Sbjct: 206 TEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKP 265

Query: 121 MRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKI 180
           MRQWMLKIT YADRLL+DLDDLDWPES+KEMQRNWIGRSEGAE+DF VLD +G+ERD KI
Sbjct: 266 MRQWMLKITAYADRLLEDLDDLDWPESIKEMQRNWIGRSEGAELDFSVLDGEGKERDEKI 325

Query: 181 TVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKT 240
           TVYTTRPDT+FGATYLVVAPEHPLLSSL +  Q + +EEY + ASRKSDLERTELQKEKT
Sbjct: 326 TVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERTELQKEKT 385

Query: 241 GVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVM 300
           GVF+G YA NPA+GEAIPIWVADYVLGSYGTGAIMAVPAHDTRD EFA KFD+ I  VV 
Sbjct: 386 GVFTGSYAINPATGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVK 445

Query: 301 PDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYK 360
           P D +   +EKAYTGEG+IVNSS+  SGLDINGLS +EA  KVIEW E+TGNGKKKVNYK
Sbjct: 446 PADGNEDDAEKAYTGEGVIVNSSS--SGLDINGLSSKEAAKKVIEWLEETGNGKKKVNYK 503

Query: 361 LRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVS 420
           LRDWLFARQRYWGEPIPVVFL+ +GE VP+ E++LPLTLPELDDFTPTGTGEPPL+KAVS
Sbjct: 504 LRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGEPPLAKAVS 563

Query: 421 WVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGG 480
           WV T + SSGKPARRET+TMPQWAGSCWYYLRFMDPKNS  LVDK KE+YW PVD+YVGG
Sbjct: 564 WVNTVDPSSGKPARRETNTMPQWAGSCWYYLRFMDPKNSNALVDKEKEKYWMPVDLYVGG 623

Query: 481 AEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADS 540
           AEHAVLHLLYARFWHKVLYDIGVVSTKEPF+C++NQG+ILGE++Y   KD DG Y+SAD+
Sbjct: 624 AEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADT 683

Query: 541 TDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGA 600
            D LGE +QE IPEEKV+KSGD FV+KD+P+IRLIARAHKMSKSRGNVVNPDDVV+EYGA
Sbjct: 684 ADRLGELQQEKIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSEYGA 743

Query: 601 DSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPT 660
           DSLRLYEMFMGP RDSKTW+TSG+EGVHRFLGR WRL+VG+ LPDG+F+ GTVV DEEP+
Sbjct: 744 DSLRLYEMFMGPLRDSKTWSTSGVEGVHRFLGRTWRLVVGAPLPDGSFRDGTVVTDEEPS 803

Query: 661 LEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKHPRKIIEPFILLLAPYAP 720
           LEQL  LHKCIAKVTEEIE TRFNT ISAMMEF NAAYKW+K PR+ IEPF+LLL+PYAP
Sbjct: 804 LEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTNAAYKWDKVPREAIEPFVLLLSPYAP 863

Query: 721 HMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAF 780
           H++EELWFRLGHSNSLAYE +P+ANP YL D T+VLP+QINGKTRGTI+VEEGCSE++AF
Sbjct: 864 HLAEELWFRLGHSNSLAYEPWPEANPSYLVDDTVVLPVQINGKTRGTIEVEEGCSEDDAF 923

Query: 781 KLASLDEKLSKFLDGKSIKKRIYVPGRILNVILDRQNIKA 820
            LAS DEKLSK+LDGK IKKRIYVPG+ILNVIL +QN+K 
Sbjct: 924 ALASQDEKLSKYLDGKEIKKRIYVPGKILNVILKQQNVKV 963

Length = 963
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|222257 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, Domain 2 Back     alignment and domain information
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|153412 cd07958, Anticodon_Ia_Leu_BEm, Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V) Back     alignment and domain information
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA Back     alignment and domain information
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) Back     alignment and domain information
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V) Back     alignment and domain information
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) Back     alignment and domain information
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|153415 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 823
PLN02563963 aminoacyl-tRNA ligase 100.0
KOG0435876 consensus Leucyl-tRNA synthetase [Translation, rib 100.0
TIGR00396842 leuS_bact leucyl-tRNA synthetase, eubacterial and 100.0
COG0495814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 100.0
PRK00390805 leuS leucyl-tRNA synthetase; Validated 100.0
COG0060933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 100.0
PRK06039 975 ileS isoleucyl-tRNA synthetase; Reviewed 100.0
PRK05743912 ileS isoleucyl-tRNA synthetase; Reviewed 100.0
COG0525877 ValS Valyl-tRNA synthetase [Translation, ribosomal 100.0
TIGR00392861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 100.0
PRK13804961 ileS isoleucyl-tRNA synthetase; Provisional 100.0
PTZ00427 1205 isoleucine-tRNA ligase, putative; Provisional 100.0
PTZ00419995 valyl-tRNA synthetase-like protein; Provisional 100.0
PLN02882 1159 aminoacyl-tRNA ligase 100.0
PRK13208800 valS valyl-tRNA synthetase; Reviewed 100.0
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 100.0
PLN023811066 valyl-tRNA synthetase 100.0
PLN02843974 isoleucyl-tRNA synthetase 100.0
PLN02943958 aminoacyl-tRNA ligase 100.0
PRK05729874 valS valyl-tRNA synthetase; Reviewed 100.0
TIGR00422861 valS valyl-tRNA synthetase. The valyl-tRNA synthet 100.0
KOG0433937 consensus Isoleucyl-tRNA synthetase [Translation, 100.0
PRK12300897 leuS leucyl-tRNA synthetase; Reviewed 100.0
TIGR00395938 leuS_arch leucyl-tRNA synthetase, archaeal and cyt 100.0
PLN02959 1084 aminoacyl-tRNA ligase 100.0
PF00133601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 100.0
KOG0432995 consensus Valyl-tRNA synthetase [Translation, ribo 100.0
KOG0434 1070 consensus Isoleucyl-tRNA synthetase [Translation, 100.0
PRK12267648 methionyl-tRNA synthetase; Reviewed 100.0
cd00817382 ValRS_core catalytic core domain of valyl-tRNA syn 100.0
PRK12268556 methionyl-tRNA synthetase; Reviewed 100.0
PLN02610 801 probable methionyl-tRNA synthetase 100.0
PLN02224616 methionine-tRNA ligase 100.0
PRK00133673 metG methionyl-tRNA synthetase; Reviewed 100.0
COG0143558 MetG Methionyl-tRNA synthetase [Translation, ribos 100.0
TIGR00398530 metG methionyl-tRNA synthetase. The methionyl-tRNA 100.0
PRK11893511 methionyl-tRNA synthetase; Reviewed 100.0
KOG0436578 consensus Methionyl-tRNA synthetase [Translation, 100.0
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 100.0
KOG0437 1080 consensus Leucyl-tRNA synthetase [Translation, rib 100.0
cd00812314 LeuRS_core catalytic core domain of leucyl-tRNA sy 100.0
PF09334391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 100.0
cd00814319 MetRS_core catalytic core domain of methioninyl-tR 100.0
cd00668312 Ile_Leu_Val_MetRS_core catalytic core domain of is 100.0
PF13603185 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; P 100.0
KOG1247567 consensus Methionyl-tRNA synthetase [Translation, 100.0
PRK00260463 cysS cysteinyl-tRNA synthetase; Validated 99.97
PTZ00399651 cysteinyl-tRNA-synthetase; Provisional 99.95
PRK12418384 cysteinyl-tRNA synthetase; Provisional 99.95
TIGR00435465 cysS cysteinyl-tRNA synthetase. This model finds t 99.95
TIGR03447411 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- 99.94
PRK14535699 cysS cysteinyl-tRNA synthetase; Provisional 99.94
PLN02946557 cysteine-tRNA ligase 99.94
PRK14536490 cysS cysteinyl-tRNA synthetase; Provisional 99.93
PRK14534481 cysS cysteinyl-tRNA synthetase; Provisional 99.9
cd00672213 CysRS_core catalytic core domain of cysteinyl tRNA 99.83
COG0215464 CysS Cysteinyl-tRNA synthetase [Translation, ribos 99.81
cd00674353 LysRS_core_class_I catalytic core domain of class 99.69
PF01406300 tRNA-synt_1e: tRNA synthetases class I (C) catalyt 99.69
PRK01611507 argS arginyl-tRNA synthetase; Reviewed 99.67
PRK00750510 lysK lysyl-tRNA synthetase; Reviewed 99.56
cd07961183 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of 99.54
KOG2007586 consensus Cysteinyl-tRNA synthetase [Translation, 99.52
cd07959117 Anticodon_Ia_Leu_AEc Anticodon-binding domain of a 99.43
cd07958117 Anticodon_Ia_Leu_BEm Anticodon-binding domain of b 99.41
cd07960180 Anticodon_Ia_Ile_BEm Anticodon-binding domain of b 99.39
PF08264153 Anticodon_1: Anticodon-binding domain of tRNA; Int 99.21
cd07962135 Anticodon_Ia_Val Anticodon-binding domain of valyl 99.14
cd07957129 Anticodon_Ia_Met Anticodon-binding domain of methi 99.14
TIGR00456566 argS arginyl-tRNA synthetase. This model recognize 99.07
TIGR00467515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 98.64
cd00671212 ArgRS_core catalytic core domain of arginyl-tRNA s 98.36
cd07375117 Anticodon_Ia_like Anticodon-binding domain of clas 98.27
PRK12451562 arginyl-tRNA synthetase; Reviewed 98.23
COG0018577 ArgS Arginyl-tRNA synthetase [Translation, ribosom 97.96
PLN02286576 arginine-tRNA ligase 97.75
PF01921360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 97.53
COG1384521 LysS Lysyl-tRNA synthetase (class I) [Translation, 97.24
PLN028821159 aminoacyl-tRNA ligase 95.99
PF00750354 tRNA-synt_1d: tRNA synthetases class I (R); InterP 95.85
cd00802143 class_I_aaRS_core catalytic core domain of class I 95.73
PRK06039975 ileS isoleucyl-tRNA synthetase; Reviewed 95.57
PTZ004271205 isoleucine-tRNA ligase, putative; Provisional 95.51
PRK149001052 valS valyl-tRNA synthetase; Provisional 95.44
TIGR00392861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 95.13
TIGR00422861 valS valyl-tRNA synthetase. The valyl-tRNA synthet 95.04
PRK05729874 valS valyl-tRNA synthetase; Reviewed 94.97
PRK13208800 valS valyl-tRNA synthetase; Reviewed 93.75
PLN02943958 aminoacyl-tRNA ligase 93.49
TIGR00467515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 93.44
COG0060933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 93.2
PRK05743912 ileS isoleucyl-tRNA synthetase; Reviewed 93.11
cd00802143 class_I_aaRS_core catalytic core domain of class I 92.89
TIGR00395938 leuS_arch leucyl-tRNA synthetase, archaeal and cyt 92.87
cd00805269 TyrRS_core catalytic core domain of tyrosinyl-tRNA 92.6
PTZ00419995 valyl-tRNA synthetase-like protein; Provisional 92.37
PRK13354410 tyrosyl-tRNA synthetase; Provisional 91.88
PLN023811066 valyl-tRNA synthetase 91.56
PLN02843974 isoleucyl-tRNA synthetase 91.32
cd00395273 Tyr_Trp_RS_core catalytic core domain of tyrosinyl 91.31
PRK12556332 tryptophanyl-tRNA synthetase; Provisional 90.99
PRK13804961 ileS isoleucyl-tRNA synthetase; Provisional 90.39
PF00579292 tRNA-synt_1b: tRNA synthetases class I (W and Y); 90.34
PF00133601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 90.32
PRK04156567 gltX glutamyl-tRNA synthetase; Provisional 89.61
PRK12300897 leuS leucyl-tRNA synthetase; Reviewed 88.47
PRK12284431 tryptophanyl-tRNA synthetase; Reviewed 88.42
PRK05912408 tyrosyl-tRNA synthetase; Validated 88.39
TIGR00233328 trpS tryptophanyl-tRNA synthetase. This model repr 85.19
PLN029591084 aminoacyl-tRNA ligase 84.98
COG0525877 ValS Valyl-tRNA synthetase [Translation, ribosomal 84.7
cd00418230 GlxRS_core catalytic core domain of glutamyl-tRNA 83.6
KOG04341070 consensus Isoleucyl-tRNA synthetase [Translation, 81.73
PRK00927333 tryptophanyl-tRNA synthetase; Reviewed 81.45
PTZ00126383 tyrosyl-tRNA synthetase; Provisional 80.94
PRK08560329 tyrosyl-tRNA synthetase; Validated 80.03
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information 
Probab=100.00  E-value=1.6e-189  Score=1691.28  Aligned_cols=818  Identities=83%  Similarity=1.364  Sum_probs=755.0

Q ss_pred             CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404            1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG   80 (823)
Q Consensus         1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g   80 (823)
                      |+||+|+|||||||||||||++|++.|++|++++.++++.|++||++||+++||+|+|+||||+|++++||+|.+||++|
T Consensus       146 m~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~G  225 (963)
T PLN02563        146 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRG  225 (963)
T ss_pred             hcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCChHHHHHHHHhhhcccC
Q 003404           81 LAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSE  160 (823)
Q Consensus        81 liy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~wp~~v~~~q~~wig~s~  160 (823)
                      |||+++++|||||.|+|+|||+||++|+||+||+++++++++||||+||+|+++|+++|+.|+||++|+.|||||||||.
T Consensus       226 liY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~nwiG~s~  305 (963)
T PLN02563        226 LAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKEMQRNWIGRSE  305 (963)
T ss_pred             CEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHHHHHHhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhhhhhhhccc
Q 003404          161 GAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKT  240 (823)
Q Consensus       161 ~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (823)
                      |++|+|++.+.++...+.+|+|||||||||||++||+|+|+|+|+..++..+....+++|+..+.+.+++++.....+++
T Consensus       306 g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~k~  385 (963)
T PLN02563        306 GAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERTELQKEKT  385 (963)
T ss_pred             eEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHhhhhccceec
Confidence            99999998643222224689999999999999999999999999988876666667788999888887777655556799


Q ss_pred             ceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCCCccccccccccceEe
Q 003404          241 GVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIV  320 (823)
Q Consensus       241 ~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~~~~~~~~~~g~~~  320 (823)
                      |.|+|.+++||++++.+|||.++||++++||||||+|||||++||+||++||||++++|++.++......+.|+++|+|+
T Consensus       386 g~~~g~~~~~P~~~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~y~~~G~l~  465 (963)
T PLN02563        386 GVFTGSYAINPATGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAYTGEGVIV  465 (963)
T ss_pred             ccccCcEEeccCCCCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCccccccccccccCceeEe
Confidence            99999999999999999999999999999999999999999999999999999999999753222122346789999999


Q ss_pred             cccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCCcCC
Q 003404          321 NSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLP  400 (823)
Q Consensus       321 ~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp  400 (823)
                      ||..  ...+++||..++|+++|+++|++.|.++..++|+|||||||||||||+|||+|||++||+++++++++||+.||
T Consensus       466 ns~~--~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~y~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv~lp  543 (963)
T PLN02563        466 NSSS--SGLDINGLSSKEAAKKVIEWLEETGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLP  543 (963)
T ss_pred             cCCC--cccccCCcCHHHHHHHHHHHHHhCCCCCCeeEecCCCceEeeecccCCceEEEEEcCCCcEEecchHhCcccch
Confidence            8863  12358999999999999999999999999999999999999999999999999999999899999999999999


Q ss_pred             cccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhhhhcCCCCChhhhhhhhccccCCceeeecC
Q 003404          401 ELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGG  480 (823)
Q Consensus       401 ~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~~~~p~n~~~~~~~~~~~~w~p~D~~v~G  480 (823)
                      ++.++.+.|.|.+||+++++|+++.||+||++++||+|||||||||||||+||++|+|.+++|+++..++|+|+|+|+||
T Consensus       544 e~~~~~~~~~g~~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Sswy~~r~~~p~~~~~~~~~~~~~~w~PvD~yigG  623 (963)
T PLN02563        544 ELDDFTPTGTGEPPLAKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWYYLRFMDPKNSNALVDKEKEKYWMPVDLYVGG  623 (963)
T ss_pred             hhhhcccCCCCCCchhcchhhhcCcCcCCCCCcEECCCcCCchhhccHHHHHHhCCCccccccCHHHHhCcCCCcEeecc
Confidence            98888888999999999999999999999999999999999999999999999999999999998888999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhhccc
Q 003404          481 AEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKS  560 (823)
Q Consensus       481 ~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (823)
                      .||+++||||+||||++|+++|++.+++||++|++||||+++++|.+|+|++|+|++.+++++.+....+.++.+.|...
T Consensus       624 ~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  703 (963)
T PLN02563        624 AEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKS  703 (963)
T ss_pred             HHHHhhHhHHHHHHHHHHHHhhccCCcccHHHHhccceeecCccccceecCCCcCccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999989999999999999988788888888888999999888


Q ss_pred             CCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHHHHHHHHHHHHc
Q 003404          561 GDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVG  640 (823)
Q Consensus       561 ~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~~~~~  640 (823)
                      +..+++.++..+.+.++++|||||+||+|+|.++|++||||+||||+|+++|..++.+|+++++.+++|||+|+|+++..
T Consensus       704 ~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~~rfL~rlwn~~~~  783 (963)
T PLN02563        704 GDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTSGVEGVHRFLGRTWRLVVG  783 (963)
T ss_pred             ccccccccCCcccccccccccccccCCcCCHHHHHHHcCcHHHHHHHHhCCCcccccccCHHHHHHHHHHHHHHHHHHHH
Confidence            88888866667778889999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             CCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhCccch
Q 003404          641 SSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKHPRKIIEPFILLLAPYAP  720 (823)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~~~~~~~~~l~~l~~lLaPi~P  720 (823)
                      .......+.++........+.++++++++++++++++|++|+|++|++++|+|++.+++|....+++++.+++||+||||
T Consensus       784 ~~~~~~~~~~~~~~~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n~l~~~~~~~~~~l~~ll~LLaPf~P  863 (963)
T PLN02563        784 APLPDGSFRDGTVVTDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTNAAYKWDKVPREAIEPFVLLLSPYAP  863 (963)
T ss_pred             hhhcccccCccccccCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhhh
Confidence            32111112111111122457889999999999999999999999999999999999998876678999999999999999


Q ss_pred             hhHHHHHHHcCCCCCccccCCCCCCcccccccccEEeEEEcceEEEEEEecCCCCHHHHHHHHhcChhHHhhhCCCCeEE
Q 003404          721 HMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSIKK  800 (823)
Q Consensus       721 ~~aEelw~~L~~~~sv~~~~WP~~~e~~l~~~~~~~~vqvngk~r~~i~v~~~~s~e~~~~~~~~~~~~~~~l~gk~i~k  800 (823)
                      |+|||||+.|+..+||+.++||++++.++.+++++++||||||+|++++++.+++++++++++++++.++++|+|++|+|
T Consensus       864 hiaEELW~~Lg~~~sv~~~~WP~~d~~~l~~~~~~~~vqiNGK~r~~i~v~~~~~~~~i~~~a~~~~~v~~~l~~k~i~K  943 (963)
T PLN02563        864 HLAEELWFRLGHSNSLAYEPWPEANPSYLVDDTVVLPVQINGKTRGTIEVEEGCSEDDAFALASQDEKLSKYLDGKEIKK  943 (963)
T ss_pred             hHHHHHHHHcCCCCeeeeCCCCCCCHHHhhcCceEEEEEECCEEeeEEEeCCCCCHHHHHHHHhcCHHHHHHhCCCCceE
Confidence            99999999999888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCEEEEEecCCcccc
Q 003404          801 RIYVPGRILNVILDRQNIKA  820 (823)
Q Consensus       801 vi~v~~kivN~v~~~~~~~~  820 (823)
                      +|+|||||||||++.+++++
T Consensus       944 ~I~vp~kivNiV~~~~~~~~  963 (963)
T PLN02563        944 RIYVPGKILNVILKQQNVKV  963 (963)
T ss_pred             EEEECCcEEEEEeCCCcCCC
Confidence            99999999999999999874

>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>PLN02882 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK13208 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02381 valyl-tRNA synthetase Back     alignment and domain information
>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>PLN02943 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK05729 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00422 valS valyl-tRNA synthetase Back     alignment and domain information
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A Back     alignment and domain information
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional Back     alignment and domain information
>PRK12418 cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase Back     alignment and domain information
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02946 cysteine-tRNA ligase Back     alignment and domain information
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases Back     alignment and domain information
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases Back     alignment and domain information
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases Back     alignment and domain information
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases Back     alignment and domain information
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases Back     alignment and domain information
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases Back     alignment and domain information
>TIGR00456 argS arginyl-tRNA synthetase Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains Back     alignment and domain information
>PRK12451 arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02286 arginine-tRNA ligase Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02882 aminoacyl-tRNA ligase Back     alignment and domain information
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>TIGR00422 valS valyl-tRNA synthetase Back     alignment and domain information
>PRK05729 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK13208 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02943 aminoacyl-tRNA ligase Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>PRK13354 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02381 valyl-tRNA synthetase Back     alignment and domain information
>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK12556 tryptophanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK05912 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00233 trpS tryptophanyl-tRNA synthetase Back     alignment and domain information
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00126 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK08560 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query823
1obh_A878 Leucyl-Trna Synthetase From Thermus Thermophilus Co 0.0
2v0c_A878 Leucyl-Trna Synthetase From Thermus Thermophilus Co 0.0
4aq7_A880 Ternary Complex Of E. Coli Leucyl-Trna Synthetase, 1e-161
3ziu_A637 Crystal Structure Of Mycoplasma Mobile Leucyl-trna 1e-81
3o0a_A219 Crystal Structure Of The Wild Type Cp1 Hydrolitic D 4e-39
3pz0_A221 The Crystal Structure Of Aaleurs-Cp1 Length = 221 3e-37
3pz5_A201 The Crystal Structure Of Aaleurs-Cp1-D20 Length = 2 1e-36
2ajg_A196 Crystal Structure Of The Editing Domain Of E. Coli 2e-29
1qu2_A917 Insights Into Editing From An Ile-Trna Synthetase S 2e-13
1wz2_A967 The Crystal Structure Of Leucyl-Trna Synthetase And 6e-12
1wkb_A810 Crystal Structure Of Leucyl-Trna Synthetase From Th 2e-11
1jzq_A821 Isoleucyl-Trna Synthetase Complexed With Isoleucyl- 1e-07
1gax_A862 Crystal Structure Of Thermus Thermophilus Valyl-Trn 2e-06
1gax_A862 Crystal Structure Of Thermus Thermophilus Valyl-Trn 4e-05
2csx_A497 Crystal Structure Of Aquifex Aeolicus Methionyl-Trn 2e-04
2d54_A502 Crystal Structure Of Methionyl Trna Synthetase Y225 6e-04
1woy_A500 Crystal Structure Of Methionyl Trna Synthetase Y225 6e-04
1a8h_A500 Methionyl-Trna Synthetase From Thermus Thermophilus 6e-04
2x1l_A524 Crystal Structure Of Mycobacterium Smegmatis Methio 8e-04
4dlp_A536 Crystal Structure Of Methionyl-Trna Synthetase Metr 9e-04
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Pre-Transfer Editing Substrate Analogue In Both Synthetic Active Site And Editing Site Length = 878 Back     alignment and structure 
Iteration: 1

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/829 (42%), Positives = 488/829 (58%), Gaps = 36/829 (4%)
Query: 1   MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREIST 60
           MQGY VLHPMGWDAFGLPAE  A++ G HPK  T  NI + +  L+ +G  YDW+RE++T
Sbjct: 68  MQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTT 127
Query: 61  IEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERG-GHPVIRK 119
            EP YY+W QWIFL++ ++GLAY+A+  VNWCP   TVLANE+VV+G   R    PV ++
Sbjct: 128 CEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKR 187
Query: 120 PMRQWMLKITEYAXXXXXXXXXXXWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIK 179
            + QW L+IT YA           WPE VK MQR WIGRSEGAE+ F V     + ++++
Sbjct: 188 ELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPV-----EGKEVR 242
Query: 180 ITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXXXXXNIEEYKNLASRKSDLERTELQKEK 239
           I V+TTRPDT+FGAT+LV+APEHP             +  Y   A RK+++ER    +EK
Sbjct: 243 IPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREK 302
Query: 240 TGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVV 299
           TGVF G YA NPA+GE IPIW ADYVL  YGTGAIMAVPAHD RD+EFA KF + I  V+
Sbjct: 303 TGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVI 362
Query: 300 -MPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVN 358
             P +      E+AY   G++VNS         +G   +E   KVI W E+ G GK +V 
Sbjct: 363 ERPGEPLPEPLERAYEEPGIMVNSGPF------DGTESEEGKRKVIAWLEEKGLGKGRVT 416
Query: 359 YKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPEL---DDFTPTGTGEPPL 415
           Y+LRDWL +RQRYWG PIP+V  +  G  VP+ E ELP+ LP+L   +D  P G    PL
Sbjct: 417 YRLRDWLISRQRYWGTPIPMVHCEACG-VVPVPEEELPVLLPDLKDVEDIRPKGKS--PL 473
Query: 416 SKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVD 475
                + +TT    G PA+R+T TM  +  S WYYLR+ DP N +   D  K   W PVD
Sbjct: 474 EAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVD 533
Query: 476 VYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSY 535
            Y+GG EHAVLHLLY+RF+ K L+D+G+V  +EPF+ +  QG++L    +    +V+GS 
Sbjct: 534 QYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPV-EVEGSV 592
Query: 536 IS-ADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDV 594
           +   + T    E  + ++  E V K G      ++  + L   A  MSKS+GN V     
Sbjct: 593 VRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPA-VMSKSKGNGVMVGPF 651
Query: 595 VTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLP----DGTFKG 650
           V E GAD  R+  +F  P  +   W   G++G  RFL R++R +           G F+ 
Sbjct: 652 VKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSGVFQA 711
Query: 651 GTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKHP------ 704
             +   +    E    LH+ + KVTE++E  RFNT I+A+MEF+NA Y++ K        
Sbjct: 712 EALEGKDR---ELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDRPVTPVY 768
Query: 705 RKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKT 764
           R  I  ++ +L P+APH++EELW      +SL    +P+ +   L+   + + +Q+NG+ 
Sbjct: 769 RTAIRYYLQMLFPFAPHLAEELWHWF-WPDSLFEAGWPELDEKALEKDVVEVAVQVNGRV 827
Query: 765 RGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSIKKRIYVPGRILNVIL 813
           RGTI + +    E A   A     +   L+GK + K IYVPG+ILN+++
Sbjct: 828 RGTIHIPKDAPLEVARAEALKVRNVRAHLEGKEVVKEIYVPGKILNLVV 876
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Sulphamoyl Analogue Of Leucyl-Adenylate In The Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3- Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The Editing Site Length = 878 Back     alignment and structure
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase, Trna(Leu) And Leucyl-Adenylate Analogue In The Aminoacylation Conformation Length = 880 Back     alignment and structure
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna Synthetase With Leu-ams In The Active Site Length = 637 Back     alignment and structure
>pdb|3O0A|A Chain A, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain From Aquifex Aeolicus Leucyl-Trna Length = 219 Back     alignment and structure
>pdb|3PZ0|A Chain A, The Crystal Structure Of Aaleurs-Cp1 Length = 221 Back     alignment and structure
>pdb|3PZ5|A Chain A, The Crystal Structure Of Aaleurs-Cp1-D20 Length = 201 Back     alignment and structure
>pdb|2AJG|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl- Trna Synthetase Length = 196 Back     alignment and structure
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase Structure With Trna(Ile) And Mupirocin Length = 917 Back     alignment and structure
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And Trna(Leucine) Complex Length = 967 Back     alignment and structure
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The Archaeon Pyrococcus Horikoshii Reveals A Novel Editing Domain Orientation Length = 810 Back     alignment and structure
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl- Adenylate Analogue Length = 821 Back     alignment and structure
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna Synthetase Complexed With Trna(Val) And Valyl-Adenylate Analogue Length = 862 Back     alignment and structure
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna Synthetase Complexed With Trna(Val) And Valyl-Adenylate Analogue Length = 862 Back     alignment and structure
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna Synthetase Complexed With Trna(Met) Length = 497 Back     alignment and structure
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a Mutant From Thermus Thermophilus Length = 502 Back     alignment and structure
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f Mutant From Thermus Thermophilus Length = 500 Back     alignment and structure
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus Length = 500 Back     alignment and structure
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Methionyl-Trna Synthetase In Complex With Methionine And Adenosine Length = 524 Back     alignment and structure
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From Brucella Melitensis Bound To Selenomethionine Length = 536 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query823
2v0c_A878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 0.0
4arc_A880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 0.0
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 1e-124
1wz2_A967 Leucyl-tRNA synthetase; ligase, riken structural g 1e-112
3o0a_A219 Leucyl-tRNA synthetase subunit alpha; CP1 hydrolyt 1e-100
2ajg_A196 Leucyl-tRNA synthetase; editing domain, ligase; 2. 4e-97
1ile_A821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 2e-24
1ile_A821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 8e-12
1ile_A821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 3e-04
3pz6_A311 Leurs, leucyl-tRNA synthetase; editing domain, gll 3e-21
1ffy_A917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 4e-17
1ffy_A917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 6e-10
1gax_A862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 1e-15
1gax_A862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 1e-10
1gax_A862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 1e-06
1rqg_A722 Methionyl-tRNA synthetase; translation, dimerizati 6e-14
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 5e-09
2wfd_A252 Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRN 9e-12
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 9e-12
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 6e-06
2wfg_A261 Cytosolic leucyl-tRNA synthetase; ligase, editing 2e-11
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 3e-11
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 2e-08
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 4e-11
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 4e-07
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 2e-10
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 4e-06
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 3e-10
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 5e-07
3tun_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 3e-09
3tun_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 3e-09
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 5e-09
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 8e-06
1wka_A147 Valyl-tRNA synthetase; editing, CP1, fidelity, the 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 Back     alignment and structure
 Score = 1244 bits (3220), Expect = 0.0
 Identities = 356/822 (43%), Positives = 487/822 (59%), Gaps = 24/822 (2%)

Query: 1   MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREIST 60
           MQGY VLHPMGWDAFGLPAE  A++ G HPK  T  NI + +  L+ +G  YDW+RE++T
Sbjct: 68  MQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTT 127

Query: 61  IEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSER-GGHPVIRK 119
            EP YY+W QWIFL++ ++GLAY+A+  VNWCP   TVLANE+VV+G   R    PV ++
Sbjct: 128 CEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKR 187

Query: 120 PMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIK 179
            + QW L+IT YA+RLL DL+ L+WPE VK MQR WIGRSEGAE+ F V   +      +
Sbjct: 188 ELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKEV-----R 242

Query: 180 ITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEK 239
           I V+TTRPDT+FGAT+LV+APEHPL   L +  + + +  Y   A RK+++ER    +EK
Sbjct: 243 IPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREK 302

Query: 240 TGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVV 299
           TGVF G YA NPA+GE IPIW ADYVL  YGTGAIMAVPAHD RD+EFA KF + I  V+
Sbjct: 303 TGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVI 362

Query: 300 MPDDESSSQ-SEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVN 358
               E   +  E+AY   G++VNS         +G   +E   KVI W E+ G GK +V 
Sbjct: 363 ERPGEPLPEPLERAYEEPGIMVNSGPF------DGTESEEGKRKVIAWLEEKGLGKGRVT 416

Query: 359 YKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTP-TGTGEPPLSK 417
           Y+LRDWL +RQRYWG PIP+V  +     VP+ E ELP+ LP+L D       G+ PL  
Sbjct: 417 YRLRDWLISRQRYWGTPIPMVHCE-ACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEA 475

Query: 418 AVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVY 477
              + +TT    G PA+R+T TM  +  S WYYLR+ DP N +   D  K   W PVD Y
Sbjct: 476 HPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQY 535

Query: 478 VGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYIS 537
           +GG EHAVLHLLY+RF+ K L+D+G+V  +EPF+ +  QG++L    +   +        
Sbjct: 536 IGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRL 595

Query: 538 ADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTE 597
            + T    E  + ++  E V K G      ++  +  + +   MSKS+GN V     V E
Sbjct: 596 PEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTL-HLWKPAVMSKSKGNGVMVGPFVKE 654

Query: 598 YGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDE 657
            GAD  R+  +F  P  +   W   G++G  RFL R++R +           G       
Sbjct: 655 QGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSGVFQAEAL 714

Query: 658 EPTLEQL-CTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKH------PRKIIEP 710
           E    +L   LH+ + KVTE++E  RFNT I+A+MEF+NA Y++ K        R  I  
Sbjct: 715 EGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDRPVTPVYRTAIRY 774

Query: 711 FILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQV 770
           ++ +L P+APH++EELW      +SL    +P+ +   L+   + + +Q+NG   GTI +
Sbjct: 775 YLQMLFPFAPHLAEELWHWFWP-DSLFEAGWPELDEKALEKDVVEVAVQVNGAVAGTIHI 833

Query: 771 EEGCSEEEAFKLASLDEKLSKFLDGKSIKKRIYVPGRILNVI 812
            +    E A   A     +   L+GK + K IYVPG+ILN++
Sbjct: 834 PKDAPLEVARAEALKVRNVRAHLEGKEVVKEIYVPGKILNLV 875
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880 Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 Back     alignment and structure
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A Length = 219 Back     alignment and structure
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A Length = 196 Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 Back     alignment and structure
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis} Length = 311 Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Length = 917 Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Length = 917 Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 Back     alignment and structure
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens} Length = 252 Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 Back     alignment and structure
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* Length = 261 Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 Back     alignment and structure
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 Back     alignment and structure
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 Back     alignment and structure
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A* Length = 147 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query823
4arc_A880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 100.0
2v0c_A878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 100.0
1ffy_A917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 100.0
1ile_A821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 100.0
1gax_A862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 100.0
1wz2_A967 Leucyl-tRNA synthetase; ligase, riken structural g 100.0
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 100.0
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 100.0
3u1f_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 100.0
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 100.0
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 100.0
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 100.0
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 100.0
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 100.0
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 100.0
3o0a_A219 Leucyl-tRNA synthetase subunit alpha; CP1 hydrolyt 100.0
2ajg_A196 Leucyl-tRNA synthetase; editing domain, ligase; 2. 100.0
3c8z_A414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 100.0
1wny_A186 Isoleucyl-tRNA synthetase; ligase, structural geno 100.0
3sp1_A501 Cysteinyl-tRNA synthetase; structural genomics, se 100.0
3tqo_A462 Cysteinyl-tRNA synthetase; protein synthesis, liga 99.97
1wka_A147 Valyl-tRNA synthetase; editing, CP1, fidelity, the 99.97
2wfd_A252 Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRN 99.96
1li5_A461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 99.96
2wfg_A261 Cytosolic leucyl-tRNA synthetase; ligase, editing 99.96
3pz6_A311 Leurs, leucyl-tRNA synthetase; editing domain, gll 99.94
1iq0_A592 Arginyl-tRNA synthetase; riken structural genomics 99.59
1irx_A523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 99.51
2zue_A629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 99.5
3fnr_A464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 99.44
1f7u_A607 Arginyl-tRNA synthetase; RNA-protein complex, amin 97.93
3aii_A553 Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta 96.47
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 96.03
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 93.78
2cfo_A492 Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s 93.61
1ile_A821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 93.6
1qtq_A553 GLNRS, protein (glutaminyl-tRNA synthetase); gluta 93.2
2yxn_A322 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 93.04
2el7_A337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 92.82
1y42_X392 Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR 92.75
2g36_A340 Tryptophanyl-tRNA synthetase; TM0492, structural g 92.63
1gax_A862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 92.4
2jan_A432 Tyrosyl-tRNA synthetase; protein biosynthesis, ami 92.11
2ts1_A419 Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 91.58
1n3l_A372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 91.46
1jil_A420 Tyrrs, tyrosyl-tRNA synthetase; truncation, based 91.45
2pid_A356 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 91.38
2hz7_A 851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 91.24
1yi8_B351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 91.21
1ffy_A917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 91.08
1h3f_A432 Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy 90.8
2yy5_A348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 90.69
1i6k_A328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 90.53
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 90.36
2o5r_A481 Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g 90.3
2zp1_A314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 90.11
2dlc_X394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 88.65
1f7u_A607 Arginyl-tRNA synthetase; RNA-protein complex, amin 88.19
3vgj_A373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 87.59
2ip1_A432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 86.56
1wz2_A967 Leucyl-tRNA synthetase; ligase, riken structural g 85.43
3sz3_A341 Tryptophanyl-tRNA synthetase; structural genomics, 85.35
1j09_A468 Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r 85.12
2cya_A364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 84.7
3al0_C592 Glutamyl-tRNA(Gln) amidotransferase subunit C, GL 84.21
3afh_A488 Glutamyl-tRNA synthetase 2; protein-substrate comp 84.19
3i05_A395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 84.18
2ja2_A498 Glutamyl-tRNA synthetase; non-discriminating gluta 84.03
2j5b_A348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 83.84
3tze_A406 Tryptophanyl-tRNA synthetase; structural genomics, 82.36
3n9i_A346 Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga 82.21
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 81.92
3prh_A388 Tryptophanyl-tRNA synthetase; TRPRS, protein biosy 81.24
3hv0_A393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 81.06
1r6t_A477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 80.9
1r6u_A437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 80.86
2cyc_A375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 80.32
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
Probab=100.00  E-value=3.9e-176  Score=1575.67  Aligned_cols=781  Identities=41%  Similarity=0.735  Sum_probs=659.5

Q ss_pred             CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404            1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG   80 (823)
Q Consensus         1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g   80 (823)
                      |+||+|+|+|||||||+|||++|++.|++|++|+.++++.|++||++||+++||+|+++||||+|++++||+|.+|+++|
T Consensus        88 m~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekG  167 (880)
T 4arc_A           88 MLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKG  167 (880)
T ss_dssp             HTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTT
T ss_pred             HcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCC-CChHHHHHHHHhhhccc
Q 003404           81 LAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDL-DWPESVKEMQRNWIGRS  159 (823)
Q Consensus        81 liy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l-~wp~~v~~~q~~wig~s  159 (823)
                      |||++.++|||||.|+|+|||+||++|+||+||++|++++++|||||||+|+++|+++|+.+ +||++|+.||+||||+|
T Consensus       168 liY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~~wig~s  247 (880)
T 4arc_A          168 LVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRS  247 (880)
T ss_dssp             CEEEEEECC------------------------------CEEEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHHHHHCEE
T ss_pred             CEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHHHhhcccccHHHHHHHHhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999 59999999999999999


Q ss_pred             CCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhhhhhhhcc
Q 003404          160 EGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEK  239 (823)
Q Consensus       160 ~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (823)
                      +|++|+|++.+.     +.+|.|||||||||||++||||||+|+|+..++..+  ..+++|+..+...+..++......+
T Consensus       248 ~g~~v~f~~~~~-----~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  320 (880)
T 4arc_A          248 EGVEITFNVNDY-----DNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENN--PELAAFIDECRNTKVAEAEMATMEK  320 (880)
T ss_dssp             EEEEEEEEETTC-----SSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGC--HHHHHHHTC----------------
T ss_pred             cceEEEEEecCC-----CceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcCh--HHHHHHHHHHhccCchhhhhcccee
Confidence            999999999532     468999999999999999999999999998876533  4567788777666665555445578


Q ss_pred             cceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCC-Cccccccccccce
Q 003404          240 TGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDES-SSQSEKAYTGEGL  318 (823)
Q Consensus       240 ~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~-~~~~~~~~~~~g~  318 (823)
                      .|.++|.+++||++|+++|||+++||+++|||||||+|||||++||+||++||||+++||++.++. ......+|+++|+
T Consensus       321 ~g~~~g~~~~~P~~~~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~  400 (880)
T 4arc_A          321 KGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGV  400 (880)
T ss_dssp             CEEEEEEEEECTTTCCEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCC
T ss_pred             eccccCcEEecCCCCCEeEEEEeCccccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCce
Confidence            899999999999999999999999999999999999999999999999999999999999875332 1123567999999


Q ss_pred             EecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCCc
Q 003404          319 IVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLT  398 (823)
Q Consensus       319 ~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~  398 (823)
                      ++++..      ++||+..+|+++|+++|++.|.+.+.++|+|||||||||||||+|||+|||++|| .+++++++||+.
T Consensus       401 ~~ns~~------~~Gl~~~eA~~~ii~~L~~~g~~~~~v~yrlrDW~iSRQRyWG~PIPi~~c~~cg-~v~v~~~~Lpv~  473 (880)
T 4arc_A          401 LFNSGE------FNGLDHEAAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGT-VMPTPDDQLPVI  473 (880)
T ss_dssp             BCSSGG------GTTCCHHHHHHHHHHHHHHTTSEEEEEEESCCCEECEESCSSSCBCCEEEETTSC-EEECCGGGCSCC
T ss_pred             eecCcc------cCCCCHHHHHHHHHHHHHHcCCcceeEEEEcccceeeeeeccCCcceEEEECCCC-eEeCChHHCccc
Confidence            988765      9999999999999999999999999999999999999999999999999997765 788999999999


Q ss_pred             CCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhhhhcCCCCChhhhhhhhccccCCceeee
Q 003404          399 LPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYV  478 (823)
Q Consensus       399 lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~~~~p~n~~~~~~~~~~~~w~p~D~~v  478 (823)
                      ||+.  +.+.|.| +||..+++|.++.||  |++++||+|||||||||||||+||++|+|.+.+++++..++|+|+|+|+
T Consensus       474 lp~~--~~~~~~g-~pl~~~~~w~~~~cp--g~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD~yi  548 (880)
T 4arc_A          474 LPED--VVMDGIT-SPIKADPEWAKTTVN--GMPALRETDTFDTFMESSWYYARYTCPQYKEGMLDSEAANYWLPVDIYI  548 (880)
T ss_dssp             CCSS--CCCCSSS-CHHHHSTTTTEEESS--SSEEEECCCEECTTTGGGTHHHHTTSTTCCSSSCCHHHHHHHCSEEEEE
T ss_pred             cchh--cccCCCC-CchHhCccceeeccC--CCcceeCCCcCCCcccCcHHHHhhcCCCccccccChHHHhccCCceEee
Confidence            9984  3445555 799999999999999  8899999999999999999999999999988899988889999999999


Q ss_pred             cChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCc--cccCCCCCccccccccccchhh
Q 003404          479 GGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGS--YISADSTDTLGEYEQESIPEEK  556 (823)
Q Consensus       479 ~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~--~~~~~~~~~~~~~~~~~~~~~~  556 (823)
                      ||+||+++||||+||||++|.++|++..++||++|++||||+++++|  .+|++|+  |++|++|+..+......+.   
T Consensus       549 gG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~ll~qGmVl~~~~~--~~d~~G~~~~~~~~~v~~~~~~~~~~~~---  623 (880)
T 4arc_A          549 GGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFY--YVGENGERNWVSPVDAIVERDEKGRIVK---  623 (880)
T ss_dssp             CCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEEECCCCEEEEEEE--EECTTSCEEEECSTTCEEEECTTCCEEE---
T ss_pred             cchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHeEEeceEeeccee--ccccCCcccccCHHHhcccccccccccc---
Confidence            99999999999999999999999999999999999999999988632  2688897  9999998764432211110   


Q ss_pred             hcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHHHHHHHHH
Q 003404          557 VMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWR  636 (823)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~  636 (823)
                              .+..+|...+...-+|||||+||+|+|.++|++||||++|||+|+.++++++++|+++.+++++||++|+|+
T Consensus       624 --------~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlwn  695 (880)
T 4arc_A          624 --------AKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWK  695 (880)
T ss_dssp             --------EECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHHH
T ss_pred             --------ccccCCccccccccccccCcCCCCCCHHHHHHHcCchHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHH
Confidence                    011233333333456999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhccc-------cchHHHH
Q 003404          637 LIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIE-GTRFNTGISAMMEFINAAYKWE-------KHPRKII  708 (823)
Q Consensus       637 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e-~~~f~~ai~~l~~~~~~~~~~~-------~~~~~~l  708 (823)
                      ++...... ..............|+++++++++++++|+++|+ +|+|++|++++|+|++.++++.       ...++++
T Consensus       696 ~~~~~~~~-~~~~~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efvn~l~k~~~~~~~~~~~l~~~l  774 (880)
T 4arc_A          696 LVYEHTAK-GDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAPTDGEQDRALMQEAL  774 (880)
T ss_dssp             HHHHHHHT-CCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHH
T ss_pred             HHHHHHhc-ccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHhhhccchHHHHHHHHHH
Confidence            87432100 0000000111245688999999999999999998 7999999999999999999863       2356899


Q ss_pred             HHHHHHhCccchhhHHHHHHHcCCCCCccccCCCCCCcccccccccEEeEEEcceEEEEEEecCCCCHHHHHHHHhcChh
Q 003404          709 EPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEK  788 (823)
Q Consensus       709 ~~l~~lLaPi~P~~aEelw~~L~~~~sv~~~~WP~~~e~~l~~~~~~~~vqvngk~r~~i~v~~~~s~e~~~~~~~~~~~  788 (823)
                      +.+++||+|||||+|||||+.|+..+||+.++||+++++++.++++++.||||||+|++++++.+++++++++++++++.
T Consensus       775 ~~ll~LLaPf~PhiaEElW~~Lg~~~sv~~~~wP~~d~~~l~~~~~~~~vqvngk~r~~~~v~~~~~~~~~~~~~~~~~~  854 (880)
T 4arc_A          775 LAVVRMLNPFTPHICFTLWQELKGEGDIDNAPWPVADEKAMVEDSTLVVVQVNGKVRAKITVPVDATEEQVRERAGQEHL  854 (880)
T ss_dssp             HHHHHHHTTTSHHHHHHHHHHTTCSSCGGGSCCCCCCHHHHCCSEEEEEEEETTEEEEEEEEETTCCHHHHHHHHHHCHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHcCCCCeEEeCCCCCCCHHHhccCceEEEEEEecceEEEEEcCCCCCHHHHHHHHhcCHH
Confidence            99999999999999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhCCCCeEEEEEeCCCEEEEEec
Q 003404          789 LSKFLDGKSIKKRIYVPGRILNVILD  814 (823)
Q Consensus       789 ~~~~l~gk~i~kvi~v~~kivN~v~~  814 (823)
                      ++++|+||+|+|+|+|||||||||++
T Consensus       855 ~~~~~~~~~~~k~i~v~~k~vn~v~~  880 (880)
T 4arc_A          855 VAKYLDGVTVRKVIYVPGKLLNLVVG  880 (880)
T ss_dssp             HHTTTTTCCCCEEEEETTTEEEEECC
T ss_pred             HHHHhCCCCceEEEEECCCEEEEEeC
Confidence            99999999999999999999999985
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A Back     alignment and structure
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A Back     alignment and structure
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Back     alignment and structure
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Back     alignment and structure
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A* Back     alignment and structure
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens} Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A* Back     alignment and structure
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis} Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Back     alignment and structure
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Back     alignment and structure
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Back     alignment and structure
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* Back     alignment and structure
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Back     alignment and structure
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Back     alignment and structure
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Back     alignment and structure
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Back     alignment and structure
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Back     alignment and structure
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Back     alignment and structure
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* Back     alignment and structure
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Back     alignment and structure
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Back     alignment and structure
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 Back     alignment and structure
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Back     alignment and structure
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Back     alignment and structure
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1 Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Back     alignment and structure
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} Back     alignment and structure
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Back     alignment and structure
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 823
d1h3na3494 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas 1e-54
d1h3na3494 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas 2e-34
d1h3na2192 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS 4e-40
d1pfva2350 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe 7e-30
d1pfva2350 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe 6e-07
d1ilea3452 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe 3e-29
d1ilea3452 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe 7e-21
d1ivsa4425 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase 9e-27
d1ivsa4425 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase 1e-19
d1ffya3450 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe 8e-23
d1ffya3450 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe 9e-16
d1ffya2194 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (Il 1e-21
d1rqga2361 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe 1e-20
d1rqga2361 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe 2e-08
d2d5ba2348 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR 2e-19
d2d5ba2348 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR 3e-08
d1udza_179 b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {T 6e-15
d1h3na1128 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS 1e-14
d1wkaa1143 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) 1e-10
d1li5a2315 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR 1e-06
d1irxa2317 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { 1e-04
d2d5ba1152 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (Me 0.002
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Leucyl-tRNA synthetase (LeuRS)
species: Thermus thermophilus [TaxId: 274]

 Score =  195 bits (495), Expect = 1e-54
 Identities = 105/286 (36%), Positives = 149/286 (52%), Gaps = 3/286 (1%)

Query: 345 EWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDD 404
            W EK    ++    +LRDWL +RQRYWG PIP+V        VP+ E ELP+ LP+L D
Sbjct: 211 NWPEKVKAMQRAWIGRLRDWLISRQRYWGTPIPMVH-CEACGVVPVPEEELPVLLPDLKD 269

Query: 405 FTP-TGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELV 463
                  G+ PL     + +TT    G PA+R+T TM  +  S WYYLR+ DP N +   
Sbjct: 270 VEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPF 329

Query: 464 DKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEM 523
           D  K   W PVD Y+GG EHAVLHLLY+RF+ K L+D+G+V  +EPF+ +  QG++L   
Sbjct: 330 DPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWT 389

Query: 524 QYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSK 583
            +   +         + T    E  + ++  E V K G      ++  +  + +   MSK
Sbjct: 390 DFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLH-LWKPAVMSK 448

Query: 584 SRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR 629
           S+GN V     V E GAD  R+  +F  P  +   W   G++G  R
Sbjct: 449 SKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWR 494
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 Back     information, alignment and structure
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 192 Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 Back     information, alignment and structure
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 194 Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 Back     information, alignment and structure
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 179 Back     information, alignment and structure
>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 128 Back     information, alignment and structure
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 143 Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 Back     information, alignment and structure
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 152 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query823
d1ffya3450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 100.0
d1h3na3494 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 100.0
d1ilea3452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 100.0
d1ivsa4425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 100.0
d1rqga2361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 100.0
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 100.0
d1h3na2192 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 100.0
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 100.0
d1wkaa1143 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 100.0
d1udza_179 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 99.97
d1ffya2194 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 99.96
d1li5a2315 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 99.8
d1h3na1128 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 99.72
d1ivsa2218 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 99.45
d1ilea1180 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 99.41
d1ffya1273 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 99.27
d1rqga1210 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 99.13
d1irxa2317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 99.0
d2d5ba1152 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 98.98
d1pfva1162 Methionyl-tRNA synthetase (MetRS) {Escherichia col 98.89
d1iq0a2370 Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi 96.49
d1f7ua2348 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 96.04
d1jila_323 Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au 90.74
d1h3fa1343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 88.42
d1j1ua_306 Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc 86.75
d1j09a2305 Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph 85.15
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=2.1e-65  Score=582.12  Aligned_cols=350  Identities=26%  Similarity=0.438  Sum_probs=268.6

Q ss_pred             CCCCcccccccCCccchHHHHHHHHhCCCCh------------HHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHH
Q 003404            1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPK------------ITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKW   68 (823)
Q Consensus         1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~------------~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~   68 (823)
                      |+||+|+|++||||||||||++|++.|.+++            +++.++++.++++|++||+++||+++|.|+||+|++.
T Consensus        83 m~G~~V~~~~G~D~~G~pie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~  162 (450)
T d1ffya3          83 MQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAA  162 (450)
T ss_dssp             TTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHH
T ss_pred             hcCCccccccccccCCcHHHHHHHhhCCccccccHHHHhhhcchhhhhhhhhHHHHHHHHhhhcccccccccccHHHHHH
Confidence            8999999999999999999999999988765            3478889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCChHHH
Q 003404           69 TQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESV  148 (823)
Q Consensus        69 ~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~wp~~v  148 (823)
                      +|++|.+|+++|+||++.++|+|||.|+|+|+++|++++.|+||+.+++.+.+.|||++++.+++.+++.++..+|+.  
T Consensus       163 v~~~f~~l~~~G~iy~~~~~v~~~p~~~~~~~~~e~~~~~~~r~~~~~~~~~~~qwf~~~~~~~~~~~~~~~~~~~~~--  240 (450)
T d1ffya3         163 QIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKV--  240 (450)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTSEESS--
T ss_pred             HHHHHHHHHHcCCeeccccccccccccCcccccccccccccccccCCceeeccccceeccccccccchhhcccccccc--
Confidence            999999999999999999999999999999999999999999999999999999999999998888765322111000  


Q ss_pred             HHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccC
Q 003404          149 KEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKS  228 (823)
Q Consensus       149 ~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (823)
                                                                                                      
T Consensus       241 --------------------------------------------------------------------------------  240 (450)
T d1ffya3         241 --------------------------------------------------------------------------------  240 (450)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCCCcc
Q 003404          229 DLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQ  308 (823)
Q Consensus       229 ~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~~  308 (823)
                                                                                                      
T Consensus       241 --------------------------------------------------------------------------------  240 (450)
T d1ffya3         241 --------------------------------------------------------------------------------  240 (450)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeeeccccCCcccEEEeCCCCcee
Q 003404          309 SEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETV  388 (823)
Q Consensus       309 ~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~  388 (823)
                                                  .........|+.           +++||||||||+||+|||+++|.++ +.+
T Consensus       241 ----------------------------~~~~~~~~~~~~-----------~~~Dw~iSRqr~WG~piP~~~~~~~-~~~  280 (450)
T d1ffya3         241 ----------------------------NWGKTRIYNMVR-----------DRGEWVISRQRVWGVPLPVFYAENG-EII  280 (450)
T ss_dssp             ----------------------------HHHHHHHHHHHH-----------HCCCEECEESCSSSCBCCCEECTTS-CEE
T ss_pred             ----------------------------cccceeeecccc-----------CccchheeeecccccCcceeecCCC-CEe
Confidence                                        001112223333           4789999999999999999999654 444


Q ss_pred             eCCCCccCCcCCcccccCCCCCCC---CCCcCCccceeecccCCCCCccccCCCccccccchhhhhhhcCCCCChhhhhh
Q 003404          389 PLHEAELPLTLPELDDFTPTGTGE---PPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDK  465 (823)
Q Consensus       389 ~v~~~~lpv~lp~~~~~~~~g~~~---~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~~~~p~n~~~~~~~  465 (823)
                      ..++...++.    +.....|...   .+......|....+..+++.+.|++|+||+||||++++.......        
T Consensus       281 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~wfds~~~~~~~~~~~--------  348 (450)
T d1ffya3         281 MTKETVNHVA----DLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETR--------  348 (450)
T ss_dssp             CCHHHHHHHH----HHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTTS--------
T ss_pred             cchhhhHHHH----HhhhhcCccccccccccccccccccccCCCCCcceeeeeeeccccccccccccccccc--------
Confidence            3221111000    0000011100   000000111112334567789999999999999987655432111        


Q ss_pred             hhccccCCceeeecChhhHHHHHHHHHHHHHHHHHh-cCccCCCccccccccceEeccceeeEEecCCCccccCCCCCcc
Q 003404          466 TKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDI-GVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTL  544 (823)
Q Consensus       466 ~~~~~w~p~D~~v~G~D~~~~Hlly~rfw~~~L~~~-~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~  544 (823)
                        ...++|+|++++|+||+       |||+..+... .+....+||++|++||||++.                      
T Consensus       349 --~~~~~P~d~~~~G~Di~-------r~w~~~~~~~~~~~~~~~Pfk~v~~hG~vld~----------------------  397 (450)
T d1ffya3         349 --PELSFPADMYLEGSDQY-------RGWFNSSITTSVATRGVSPYKFLLSHGFVMDG----------------------  397 (450)
T ss_dssp             --TTCCSSBSEEEEEGGGG-------TTHHHHHHHHHHHHHSSCSBSEEEEECCEECT----------------------
T ss_pred             --ccccCCCcccccCcchh-------hHHHHHHHHHHHHhcCCCCcceEEEcceEECC----------------------
Confidence              13457999999999997       7775544333 344567999999999999854                      


Q ss_pred             ccccccccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccch
Q 003404          545 GEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGI  624 (823)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i  624 (823)
                                                      +|+|||||+||+|+|.++|++||||+|||||++ +++++|++|+++.+
T Consensus       398 --------------------------------~G~KMSKS~GN~I~p~dii~~yGaDalR~~l~s-~~~~~D~~fs~~~l  444 (450)
T d1ffya3         398 --------------------------------EGKKMSKSLGNVIVPDQVVKQKGADIARLWVSS-TDYLADVRISDEIL  444 (450)
T ss_dssp             --------------------------------TSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHT-SCTTSCEECCHHHH
T ss_pred             --------------------------------CCCCCCCCCCCCcCHHHHHHHhCcHHHHHHHHc-CCCCCCcCcCHHHH
Confidence                                            389999999999999999999999999999985 66789999999888


Q ss_pred             HHHH
Q 003404          625 EGVH  628 (823)
Q Consensus       625 ~~~~  628 (823)
                      +++.
T Consensus       445 ~~~~  448 (450)
T d1ffya3         445 KQTS  448 (450)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            7754
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure