Citrus Sinensis ID: 003408

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820--

MFWRMAGLSTASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTALHDRGRDSDDDDYQNRDYDVAALANNLSQAFRYGIYSNDDVDEAQGSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRVSHERAAGSLASPSPNIEETGVTNGGGHDQVTVGEDDLDDTATSAAVPVSKSEDSDVGKLPNDSVETGSCTTEKPPTWVEWRERPDSSNPSSADEPVSIPNGELQDQGGNGDVDVPEPSPSSSNTEDANITTTGELSKSIDENPSSKPSEPSESGSPSEPAESGTPSEPAESGTPSEPAESGTPSEPSESVDGNHPSSDPAATEVVKTVAKAEGTPEVTKDDKDVVNEAEN

ccccccccccccHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccHHHcccHHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHcccccccccccccccccHHHHccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

ccEEccccccccHHHHHHccccccHHHHccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHcccccHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccHHHHccccc

mfwrmaglstaspvetildkenftleelldedDIIQECKALNGRLINFLRERAQVEQLIQYIVVEapedaekrrtfkfpfvaceiFTCEVDIILKTLVEDEELMNLLFSflepkdshstllAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDkfsssdspevhANAAETLCSItrsappalaakisspnFIGRLFRHalensrpksvLVNSLSICIslldpkrltlgTYYMFNrqlthgstvtvnpetveGMLGRLGDLLKLLDVSSEESSLLTtygklqpplgkhrLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFfeypynnflhhHVENIILSClecknaplIEHLLHECNLVGKILEAeknftlkdsnkptvpaegrlpprignighLTRISNKLIQLGNNNSEIHAYLQensewndwQINVLSKRNTLENIYQwacgrptalhdrgrdsddddyqnrdYDVAALANNLSQAfrygiysnddvdeaqgslerddedvyfddesAEVVISSLrlgddqesgslftnsnwfafeddrvsheraagslaspspnieetgvtnggghdqvtvgeddlddtatsaavpvsksedsdvgklpndsvetgscttekpptwvewrerpdssnpssadepvsipngelqdqggngdvdvpepspsssntedanitttgelsksidenpsskpsepsesgspsepaesgtpsepaesgtpsepaesgtpsepsesvdgnhpssdpaaTEVVKTVAkaegtpevtkddkDVVNEAEN

mfwrmaglstaspvetilDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVeapedaekrrTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRqlthgstvtvnPETVEGMLGRLGDLLKLLDVSSEESSLLTtygklqpplgkhrLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKnftlkdsnkptvpaegrlpprigNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTALHDRGRDSDDDDYQNRDYDVAALANNLSQAFRYGIYSNDDVDEAQGSlerddedvyfdDESAEVVISSlrlgddqesgsLFTNSNWFAFEDDRVSHERaagslaspspnieetgvtngGGHDQVTVGEDDLDDTATSaavpvsksedsdvgklpndsvetgscttekpptwvewrerpDSSNPSSADEPVSIPNGELQDQGGNGDVDVPEPspsssntedanITTTgelsksidenpsskpsepsesgspsepaESGTPSEPAESGTPSEPAESGTPSEPSESVDGNHPSSDPAATEVVKTVakaegtpevtkddkdvvneaen

MFWRMAGLSTASPVETILDKENFTleelldeddIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMlgrlgdllklldvsseessllTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTALHdrgrdsddddyqnrdydVAALANNLSQAFRYGIYSNDDVDEAQGSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRVSHERAAGSLASPSPNIEETGVTNGGGHDQVTVGEDDLDDTATSAAVPVSKSEDSDVGKLPNDSVETGSCTTEKPPTWVEWRERPDSSNPSSADEPVSIPNGELQDQGGNGDVDVpepspsssNTEDANITTTGELSKSIDenpsskpsepsesgspsepaesgtpsepaesGTPSEPAESGTPSEPSESVDGNHPSSDPaatevvktvakaeGTPEVTKDDKDVVNEAEN

************PVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKF**************TLCSIT*****ALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTL****************RIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTAL**************RDYDVAALANNLSQAFRYGIYSN*****************YF*****EVVISSL**********LFTNSNWFAF*******************************************************************************************************************************************************************************************************************************************

MFWRM**LSTASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVV*******KRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLT*****************TVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNF******************RIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACG****************************NNLSQAFRYGIYSNDDVDEAQGSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRVSHERA*********************************************************************************************************************************************************************************************************************************

*********TASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKF*********ANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTALHDRGRDSDDDDYQNRDYDVAALANNLSQAFRYGIYSNDDVDEAQGSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRVSHERAAGSLASPSPNIEETGVTNGGGHDQVTVGEDDL***********************************KPPTWVE*****************SIPNGELQD*****************************************************************************************************TVAKAEGTPEVTKDDKDVVNEAEN

MFWRMAGLSTASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFN***THGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNF**************RLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVLSKRNTLENIYQWACGRPTALHDRGRDSDDDDYQNRDYDVAALANNLSQAFRYGIYSNDDV***Q*SLERDDEDVYFDDESAEVVISSLRLG***ESGSLF***************************************************************************************************************************************************************************************************************************************************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		822	2.2.26 [Sep-21-2011]
Q922D4		844	Serine/threonine-protein	yes	no	0.614	0.598	0.301	2e-67
Q5F471		873	Serine/threonine-protein	yes	no	0.616	0.580	0.301	1e-66
Q8R3Q2		923	Serine/threonine-protein	no	no	0.535	0.476	0.317	2e-66
Q5H9R7		873	Serine/threonine-protein	yes	no	0.615	0.579	0.293	6e-66
O75170		966	Serine/threonine-protein	no	no	0.535	0.455	0.318	2e-65
Q9UPN7		881	Serine/threonine-protein	no	no	0.619	0.577	0.289	8e-65
Q7TSI3		856	Serine/threonine-protein	no	no	0.616	0.592	0.293	1e-62
Q6NRF1		850	Serine/threonine-protein	N/A	no	0.577	0.558	0.293	4e-60
Q6NRI0		852	Serine/threonine-protein	N/A	no	0.577	0.557	0.293	1e-59
O74511		838	Extragenic suppressor of	yes	no	0.416	0.408	0.264	3e-23

>sp\|Q922D4\|PP6R3_MOUSE Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Mus musculus GN=Ppp6r3 PE=1 SV=1	Back alignment and function desciption

 Score =  257 bits (657), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 170/564 (30%), Positives = 301/564 (53%), Gaps = 59/564 (10%)

Query: 1   MFWRMAGLSTASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQ 60
           MFW+   L ++S ++T+L++E+ TL+EL+DE+D++QECKA N +LI FL +   +E L+ 
Sbjct: 1   MFWKF-DLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVS 59

Query: 61  YIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTL 120
           +I+ E P+D +++  +K+P ++CE+ T +V  +   L EDE L+  L+SFL  +   + L
Sbjct: 60  FIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLMKLYSFLLNESPLNPL 119

Query: 121 LAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTN 180
           LA +FSKV+  L+ RK   ++ ++K  ++ +  ++  IG ++IM++L+RL+   E     
Sbjct: 120 LASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPR 179

Query: 181 FTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITR------------SAPPAL 228
             + + W+ +  +++ +V+    S   + H+NA+++LC I R            + P  L
Sbjct: 180 -QDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQVQNSTEPDPL 238

Query: 229 AAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTL-GTYYMFNRQLTHGS 287
            A +     I +L  +     + +S +V+++ I ++LL+ +R T  G   +    ++H S
Sbjct: 239 LATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMSH-S 297

Query: 288 TVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTV 347
             +VN   +E + GRLG   +LL    ++S + TT+G L PP+G  RL ++  IS LL  
Sbjct: 298 ACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRLISSLLQT 357

Query: 348 GSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLEC--KNAP--------- 396
            + +   +L+   ++  ILD+FF+Y +NNFLH  VE  I   L    +NA          
Sbjct: 358 NTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDS 417

Query: 397 -----LIEHLLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKL 451
                L++HL  +C L+ +ILEA       D+N+      GR   R G +GHLTRI+N +
Sbjct: 418 TGDNLLLKHLFQKCQLIERILEA------WDTNEKKQAEGGR---RHGYMGHLTRIANCI 468

Query: 452 IQ---LGNNNSEIHAYLQE-----NSEWNDWQINVL---SKRNTLE---NIYQWACGRPT 497
           +     G N++ +   +++        W  +  N L   +KRNT++   + YQ       
Sbjct: 469 VHSTDKGPNSALVQQLIKDLPDEVRERWETFCTNSLGETNKRNTVDLAFSDYQMQQMTSN 528

Query: 498 ALHDRG----RDSDDDDYQNRDYD 517
            +   G    + +D DD  N  +D
Sbjct: 529 FIDQFGFNDEKFADQDDIGNVSFD 552

Regulatory subunit of protein phosphatase 6 (PP6). May function as a scaffolding PP6 subunit. May have an important role in maintaining immune self-tolerance.
Mus musculus (taxid: 10090)

>sp\|Q5F471\|PP6R3_CHICK Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Gallus gallus GN=PPP6R3 PE=2 SV=1	Back alignment and function description

>sp\|Q8R3Q2\|PP6R2_MOUSE Serine/threonine-protein phosphatase 6 regulatory subunit 2 OS=Mus musculus GN=Ppp6r2 PE=1 SV=1	Back alignment and function description

>sp\|Q5H9R7\|PP6R3_HUMAN Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Homo sapiens GN=PPP6R3 PE=1 SV=2	Back alignment and function description

>sp\|O75170\|PP6R2_HUMAN Serine/threonine-protein phosphatase 6 regulatory subunit 2 OS=Homo sapiens GN=PPP6R2 PE=1 SV=2	Back alignment and function description

>sp\|Q9UPN7\|PP6R1_HUMAN Serine/threonine-protein phosphatase 6 regulatory subunit 1 OS=Homo sapiens GN=PPP6R1 PE=1 SV=5	Back alignment and function description

>sp\|Q7TSI3\|PP6R1_MOUSE Serine/threonine-protein phosphatase 6 regulatory subunit 1 OS=Mus musculus GN=Ppp6r1 PE=1 SV=1	Back alignment and function description

>sp\|Q6NRF1\|P6R3B_XENLA Serine/threonine-protein phosphatase 6 regulatory subunit 3-B OS=Xenopus laevis GN=ppp6r3-b PE=2 SV=1	Back alignment and function description

>sp\|Q6NRI0\|P6R3A_XENLA Serine/threonine-protein phosphatase 6 regulatory subunit 3-A OS=Xenopus laevis GN=ppp6r3-a PE=2 SV=1	Back alignment and function description

>sp\|O74511\|EKC1_SCHPO Extragenic suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ekc1 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		822
255564407		783	conserved hypothetical protein [Ricinus	0.922	0.968	0.778	0.0
359483671		786	PREDICTED: serine/threonine-protein phos	0.889	0.930	0.790	0.0
297740815		785	unnamed protein product [Vitis vinifera]	0.888	0.929	0.790	0.0
356532415		881	PREDICTED: serine/threonine-protein phos	0.827	0.771	0.742	0.0
356558055		838	PREDICTED: serine/threonine-protein phos	0.905	0.887	0.691	0.0
449433551		769	PREDICTED: serine/threonine-protein phos	0.906	0.968	0.719	0.0
449490607		772	PREDICTED: LOW QUALITY PROTEIN: serine/t	0.906	0.965	0.712	0.0
357448461		794	Serine/threonine protein phosphatase 6 r	0.885	0.916	0.689	0.0
42562411		811	SIT4 phosphatase-associated-like protein	0.927	0.939	0.665	0.0
334182957		805	SIT4 phosphatase-associated-like protein	0.922	0.941	0.665	0.0

>gi\|255564407\|ref\|XP_002523200.1\| conserved hypothetical protein [Ricinus communis] gi\|223537607\|gb\|EEF39231.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score = 1155 bits (2989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/771 (77%), Positives = 658/771 (85%), Gaps = 13/771 (1%)

Query: 1   MFWRMAGLSTASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQ 60
           MFWRMAGLSTASPVETILDKENFTLEELLDED+IIQECKALNGRLINFLRERAQVEQLI+
Sbjct: 1   MFWRMAGLSTASPVETILDKENFTLEELLDEDEIIQECKALNGRLINFLRERAQVEQLIR 60

Query: 61  YIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTL 120
           YI+ EAPEDAEKRRTFKFPF+ACEIFTCEVDIILKTLVEDEELMNLLFSFLEP  +HSTL
Sbjct: 61  YIIEEAPEDAEKRRTFKFPFIACEIFTCEVDIILKTLVEDEELMNLLFSFLEPTQTHSTL 120

Query: 121 LAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTN 180
           LAGYFSKVVICLLLRKT+P MHYIKAHQ+I+ +LVDLIGITSIMEVLIRLIGADEHMYT+
Sbjct: 121 LAGYFSKVVICLLLRKTIPFMHYIKAHQQILNQLVDLIGITSIMEVLIRLIGADEHMYTS 180

Query: 181 FTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGR 240
           + ++MQWIE+T+VLEMIVDKFSSSDSPEVHAN AETLC+ITR APP LAAKISSPNFIGR
Sbjct: 181 YMDAMQWIEETDVLEMIVDKFSSSDSPEVHANTAETLCAITRFAPPGLAAKISSPNFIGR 240

Query: 241 LFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGML 300
           LFRHALE SRPKSVLVNSLSICISLLDPKRLTLG+Y+ +NRQL HGSTVTV+PETVEGML
Sbjct: 241 LFRHALEESRPKSVLVNSLSICISLLDPKRLTLGSYHTYNRQLNHGSTVTVSPETVEGML 300

Query: 301 GRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHG 360
             LGDLLKLLDV+S E+ LLTTYGKLQPPLGKHRLKIVEFISVLL+VGSEAAEKELI+ G
Sbjct: 301 DSLGDLLKLLDVASTENILLTTYGKLQPPLGKHRLKIVEFISVLLSVGSEAAEKELIQLG 360

Query: 361 AVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTL 420
           AV+RILDLFFEYPYNNFLHHHVENII SCLE K A LI+HLL ECNLVGKILEAEKN TL
Sbjct: 361 AVQRILDLFFEYPYNNFLHHHVENIIFSCLESKLAVLIQHLLRECNLVGKILEAEKNSTL 420

Query: 421 -KDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQINVL 479
             D+ KPT+PA+ R PPRIGNIGHLTRISNKLIQLGNNN +I A LQENSEW DW  NVL
Sbjct: 421 AADTGKPTLPADARPPPRIGNIGHLTRISNKLIQLGNNNGDILACLQENSEWTDWHANVL 480

Query: 480 SKRNTLENIYQWACGRPTALHDRGRDSDDDDYQNRDYDVAALANNLSQAFRYGIYSNDDV 539
           +KRN +EN+YQWACGRPTALH   RDSDDDDYQ+RDYDVAALANNLSQAFRYGIY NDDV
Sbjct: 481 TKRNAVENVYQWACGRPTALH-DRRDSDDDDYQDRDYDVAALANNLSQAFRYGIYGNDDV 539

Query: 540 DEAQGSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRVSHERAAG 599
           DE  GSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRV++ER+AG
Sbjct: 540 DEVHGSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRVANERSAG 599

Query: 600 SLASPSPNIEETGVTNGGGHDQVTVGE-DDLDDTATSAAVPVSKSEDSDVGKLPNDSVET 658
           +LAS SPN EE    +G G+D+V VGE DDLDDTATS+  P    +DS    L  DS E 
Sbjct: 600 ALASSSPNNEEPVFVDGAGNDEVMVGEDDDLDDTATSSPAPEPSLDDSSGNNLSEDSKEI 659

Query: 659 GSCTTEKPPTWVEWRERPDSSNPSSADEPVSIPNGELQ----DQGGNGDVDVPEPSPSSS 714
                EKP  WVEWRE PD+++P + D P  +PNGELQ    +QGG+GD  V +P  SS 
Sbjct: 660 --VGNEKPTVWVEWRETPDTNDPFNPDVP-PVPNGELQVDSENQGGDGDSAVADPVCSSD 716

Query: 715 NTEDANITTTGELSKSIDENPSSKPSEPSESGS--PSEPAESGTPSEPAES 763
            T + +    G  + S D +P++ PS  SESGS  PS P E     E  E+
Sbjct: 717 ATVNDSNAVEGSPNASND-SPTTNPSTSSESGSENPSSPNEVKMTVETEET 766

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359483671\|ref\|XP_002281685.2\| PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297740815\|emb\|CBI30997.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356532415\|ref\|XP_003534768.1\| PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|356558055\|ref\|XP_003547324.1\| PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|449433551\|ref\|XP_004134561.1\| PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449490607\|ref\|XP_004158654.1\| PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357448461\|ref\|XP_003594506.1\| Serine/threonine protein phosphatase 6 regulatory subunit [Medicago truncatula] gi\|355483554\|gb\|AES64757.1\| Serine/threonine protein phosphatase 6 regulatory subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|42562411\|ref\|NP_174335.4\| SIT4 phosphatase-associated-like protein [Arabidopsis thaliana] gi\|332193102\|gb\|AEE31223.1\| SIT4 phosphatase-associated-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|334182957\|ref\|NP_001185116.1\| SIT4 phosphatase-associated-like protein [Arabidopsis thaliana] gi\|332193104\|gb\|AEE31225.1\| SIT4 phosphatase-associated-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		822
TAIR\|locus:2028185		811	AT1G30470 "AT1G30470" [Arabido	0.847	0.859	0.671	1.3e-251
TAIR\|locus:2205185		802	AT1G07990 "AT1G07990" [Arabido	0.816	0.836	0.558	5.9e-199
TAIR\|locus:2057507		788	AT2G28360 "AT2G28360" [Arabido	0.799	0.833	0.538	4.4e-187
MGI\|MGI:1918724		923	Ppp6r2 "protein phosphatase 6,	0.469	0.418	0.302	8.1e-55
UNIPROTKB\|O75170		966	PPP6R2 "Serine/threonine-prote	0.469	0.399	0.300	3.3e-53
ZFIN\|ZDB-GENE-030131-3251		902	ppp6r3 "protein phosphatase 6,	0.462	0.421	0.282	1.3e-51
UNIPROTKB\|A7Z051		873	SAPS3 "SAPS3 protein" [Bos tau	0.462	0.435	0.297	3.4e-50
UNIPROTKB\|G3X7E2		834	PPP6R2 "Uncharacterized protei	0.468	0.461	0.299	4.5e-50
UNIPROTKB\|F1RMN3		880	PPP6R1 "Uncharacterized protei	0.326	0.304	0.290	9.1e-50
MGI\|MGI:2442163		856	Ppp6r1 "protein phosphatase 6,	0.326	0.313	0.301	1.7e-49

TAIR\|locus:2028185 AT1G30470 "AT1G30470" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2423 (858.0 bits), Expect = 1.3e-251, P = 1.3e-251
 Identities = 478/712 (67%), Positives = 561/712 (78%)

Query:     1 MFWRMAGLSTASPVETILDKENFTXXXXXXXXXIIQECKALNGRLINFLRERAQVEQLIQ 60
             MFWRMAGLSTAS VE ILDK++FT         IIQECKALNGRL+NFLRE+ QVEQLI+
Sbjct:     1 MFWRMAGLSTASAVEAILDKDSFTLEDLLDEDEIIQECKALNGRLLNFLREKVQVEQLIR 60

Query:    61 YIVVEAPEDAEKRRTFKFPFVACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTL 120
             YI+ E  ED EK+RTFKFPF+ACEIFTCE+++ILKTLVEDEELM LLFSFLE K++H++L
Sbjct:    61 YIIEEPLEDVEKKRTFKFPFIACEIFTCEIEMILKTLVEDEELMLLLFSFLEAKETHNSL 120

Query:   121 LAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTN 180
             LAGYFSKVVICLL+RKT+P M +IK HQEI+ +LVDLIGITSIMEVL RL+G DEH+Y+N
Sbjct:   121 LAGYFSKVVICLLVRKTIPFMQFIKDHQEILKQLVDLIGITSIMEVLKRLVGTDEHLYSN 180

Query:   181 FTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGR 240
             +T +MQWIEDT+VLEMIVDKF SS+SPEVHANAAE LC++ R APP LA K+SSP+  GR
Sbjct:   181 YTSAMQWIEDTDVLEMIVDKFGSSESPEVHANAAEILCTVARYAPPGLATKLSSPSCTGR 240

Query:   241 LFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMX 300
             L +H LE+SRPKSVLVNSLS+CISLLDPKR TLGTY+++ RQLTHGS VT NPETVEGM 
Sbjct:   241 LLKHTLEDSRPKSVLVNSLSVCISLLDPKRFTLGTYHIYGRQLTHGSMVT-NPETVEGML 299

Query:   301 XXXXXXXXXXXXXXXXXXXXTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHG 360
                                 TTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKE+IR G
Sbjct:   300 GSLGDLLMLLNVSSAEGVLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKEVIRLG 359

Query:   361 AVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEAEKNFTL 420
             AV+R+LDLFFEYPYNNFLHHHVEN+ILSC+E KN+ L++HLL ECNL+G ILEAEK+ TL
Sbjct:   360 AVKRVLDLFFEYPYNNFLHHHVENVILSCMESKNSQLVDHLLSECNLIGSILEAEKDSTL 419

Query:   421 K--DSNK--PTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSEIHAYLQENSEWNDWQI 476
                DS+K  PTVPAEG+ P RIGNIGHLTRISNKL+QL N+N EI ++LQENS+W DWQ 
Sbjct:   420 TAGDSDKLQPTVPAEGKKPLRIGNIGHLTRISNKLLQLANSNVEIQSHLQENSKWVDWQT 479

Query:   477 NVLSKRNTLENIYQWACGRPTALHXXXXXXXXXXXXXXXXXVAALANNLSQAFRYGIYSN 536
             +VLSKRNTLEN+Y WACGRPT+LH                 VAALANNLSQAFRYGIYSN
Sbjct:   480 DVLSKRNTLENVYSWACGRPTSLHDRSRDSDDDDYHDRDYDVAALANNLSQAFRYGIYSN 539

Query:   537 DDVDEAQGSLERDDEDVYFDDESAEVVISSLRLGDDQESGSLFTNSNWFAFEDDRVSHER 596
             DD+DEAQGS+ERDDEDVYFDDESAEVVISSLRLGDDQES SLFTNSNWFAF+DD+ ++ER
Sbjct:   540 DDMDEAQGSMERDDEDVYFDDESAEVVISSLRLGDDQESDSLFTNSNWFAFDDDKAANER 599

Query:   597 AAGSLASPSPNIEETGVTNGGGHDQVTVGE-DDLDDTATSAAVPVSKSEDSDVGKLPNDS 655
             +  S ASPSPN +  G  +G   D V +GE D+ + TA S+  PV    +    K P+++
Sbjct:   600 SMTSAASPSPNAD--G--DGEDDDDVVIGEADEFNATAASSP-PVDMETEDSTSKHPSEN 654

Query:   656 VETGSCTTEKPPTWVEWRERPDSSNPSSA--DEPVSIPNGELQDQGGNGDVD 705
                     EK P WVEWRE  +S+ P S+  +E   + NG++Q +  + D D
Sbjct:   655 PSEPE--PEKSPAWVEWRETSESTAPPSSNPEETTILSNGDVQIEKEDNDDD 704

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR\|locus:2205185 AT1G07990 "AT1G07990" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2057507 AT2G28360 "AT2G28360" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

MGI\|MGI:1918724 Ppp6r2 "protein phosphatase 6, regulatory subunit 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|O75170 PPP6R2 "Serine/threonine-protein phosphatase 6 regulatory subunit 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-3251 ppp6r3 "protein phosphatase 6, regulatory subunit 3" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|A7Z051 SAPS3 "SAPS3 protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|G3X7E2 PPP6R2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RMN3 PPP6R1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:2442163 Ppp6r1 "protein phosphatase 6, regulatory subunit 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		822
pfam04499		380	pfam04499, SAPS, SIT4 phosphatase-associated prote	2e-81
PHA03307		1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-09
PHA03307		1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-06
pfam04652		315	pfam04652, DUF605, Vta1 like	1e-05
TIGR02927		579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	7e-04
PHA03307		1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.001
PHA03307		1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.002
PRK13108		460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	0.002
pfam12361		318	pfam12361, DBP, Duffy-antigen binding protein	0.003
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003

>gnl\|CDD\|218113 pfam04499, SAPS, SIT4 phosphatase-associated protein	Back alignment and domain information

 Score =  265 bits (680), Expect = 2e-81
 Identities = 105/394 (26%), Positives = 183/394 (46%), Gaps = 48/394 (12%)

Query: 129 VICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWI 188
              LL RKT  ++ +I+  +  + + +  I   +IM++L++LI  ++      T  ++W+
Sbjct: 1   NENLLDRKTDEMLEFIRKQENFVDKFLKHIDTPAIMDLLLKLISTEK--PELPTGIIEWL 58

Query: 189 EDTNVLEMIVDKFSSSDSPEVHANAAETLCSITR------------SAPPALAAKISSPN 236
            +  ++  ++D  S     +V +NAA+ L +I                P  L  ++ S  
Sbjct: 59  NEQKLIPKLIDLLSPEYDSDVQSNAADFLKAIITISANQPLQLQSCIGPNELTRELVSEE 118

Query: 237 FIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETV 296
            + +L  + L+     S LVN + I I L+  K  +     ++    +H  +   +P  +
Sbjct: 119 SVEKLLDNMLDEEGNGSALVNGVGILIELIR-KNNSDYDEILYTTIESHPPS-ERDPIYL 176

Query: 297 EGMLG----RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLL------- 345
             +L      L D  +LL    ++  L TTYG L  PLG  R KIVE I+ LL       
Sbjct: 177 GSLLRLFSPHLPDFHQLLLNPPKKPLLTTTYGVLIEPLGFERFKIVELIAELLHCSNMGL 236

Query: 346 TVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCL-----ECKNAPLIEH 400
               +  + EL+    +  ILDLFF+YP+NNFLH+ VE+I+   L        N+ L+  
Sbjct: 237 LNVGDYLKIELVDLKIIPTILDLFFKYPWNNFLHNVVEDIVQQILNGPMDSGYNSFLVVD 296

Query: 401 LLHECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSE 460
           L  +CNL  +ILE +     K+S++    A+G   PR+G +GHLT I+ ++++       
Sbjct: 297 LFTDCNLTQRILEGQ-----KESDE--FQAKGG--PRLGYMGHLTLIAEEVVKFSEKYPP 347

Query: 461 ------IHAYLQENSEWNDWQINVLSKRNTLENI 488
                 I   ++ N EW ++    L +     N+
Sbjct: 348 ELISPLIKEAVE-NEEWEEYVEETLEETRERYNV 380

This family includes a conserved region from a group of yeast proteins that associate with the SIT4 phosphatase. This association is required for SIT4's role in G1 cyclin transcription and for bud formation. This family also includes homologous regions from other eukaryotes. Length = 380

>gnl\|CDD\|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	Back alignment and domain information

>gnl\|CDD\|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	Back alignment and domain information

>gnl\|CDD\|218191 pfam04652, DUF605, Vta1 like	Back alignment and domain information

>gnl\|CDD\|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase	Back alignment and domain information

>gnl\|CDD\|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	Back alignment and domain information

>gnl\|CDD\|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	Back alignment and domain information

>gnl\|CDD\|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed	Back alignment and domain information

>gnl\|CDD\|221548 pfam12361, DBP, Duffy-antigen binding protein	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		822
KOG2073		838	consensus SAP family cell cycle dependent phosphat	100.0
PF04499		475	SAPS: SIT4 phosphatase-associated protein; InterPr	100.0
KOG2073		838	consensus SAP family cell cycle dependent phosphat	99.11
KOG3546		1167	consensus Collagens (type XV) [Extracellular struc	96.82
KOG1924		1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	93.3
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	92.87
PF04499		475	SAPS: SIT4 phosphatase-associated protein; InterPr	91.94
KOG1924		1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	91.24
PF05804		708	KAP: Kinesin-associated protein (KAP)	88.6
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	87.95

>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=2.7e-110  Score=979.77  Aligned_cols=729  Identities=34%  Similarity=0.531  Sum_probs=609.1

Q ss_pred             CCccCCCCCCCChhhhhhcCCCCCHHHhhCChhHHHHHHhhchhHHHHhhcHHHHHHHHHHhhcCCCcchHhhhcccccc
Q 003408            1 MFWRMAGLSTASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPF   80 (822)
Q Consensus         1 MFWkf~g~~~~S~ID~LLdked~TLEeLLdEddlLQE~K~~N~kLIdFL~kpe~lekLI~YI~~e~~ed~e~k~~~Kyp~   80 (822)
                      |||+| +....+.++.+|+++.+||++||||++++||||.+|.||++||++|+++++|+.||++++++|.++|++||||+
T Consensus         1 ~f~~~-~~~~~~~~e~~l~~~~~~l~elldeed~~~e~~~~n~~l~~~l~~~e~~~~l~~~I~~e~~~d~D~k~~f~~p~   79 (838)
T KOG2073|consen    1 MFWDF-DLESSAEIELLLEKESDTLDELLDEEDILQECKLQNSKLLNFLKRPEVLEKLVEYIIEEPEEDADKKTRFKYPN   79 (838)
T ss_pred             Ccccc-ccchhHHHHHhcccchhHHHHhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhhhcCCCcccchhhhhcccc
Confidence            99999 67888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhccchHHHHHHhhcCHHHHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCc
Q 003408           81 VACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI  160 (822)
Q Consensus        81 iAsEILssdv~~I~d~Lvede~lL~~L~sfL~~~~~ln~llAgyFsKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~  160 (822)
                      |+||||||++|.|.++|++|+.+|.+||+||+++.|+|+++++||+|++++|+.||+.++|.||+++.++|+.|++||++
T Consensus        80 i~~Eilt~dv~~I~~~l~~de~ll~~l~s~l~~~~pln~~l~s~F~k~~~~Ll~~k~~~~~~f~k~~~~~v~~~l~hi~~  159 (838)
T KOG2073|consen   80 ISCEILTSDVWPISEALVEDESLLSLLYSILEHEPPLNPLLSSFFSKINSRLLDRKTEQILEFIKKKDNFVDLFLKHIDI  159 (838)
T ss_pred             HHHHHHhcCcHHHHHHHhccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHHcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcccccccccchhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhc-----CchhHHhhcCCh
Q 003408          161 TSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRS-----APPALAAKISSP  235 (822)
Q Consensus       161 ~aImDlLlrLIt~de~~~~~~~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~-----spn~L~~~L~S~  235 (822)
                      ++|||||+|+++|+++.++. +++++||+++++|+||+++++++.++++|+||+++||+|+|+     +|++|+++|+||
T Consensus       160 stlMD~Llkli~~de~~~p~-~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~  238 (838)
T KOG2073|consen  160 STLMDFLLKLISTDEPESPR-TDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESP  238 (838)
T ss_pred             cHHHHHHHHhccccCCCCch-HHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCH
Confidence            99999999999999999875 999999999999999999999999999999999999999999     899999999999


Q ss_pred             HHHHHHHHHHhcCCCCcceeccceeeeeecccccccccch--h-hhhcccccCCCccccCchhhHhHHHhHHHHHHhhcc
Q 003408          236 NFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGT--Y-YMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDV  312 (822)
Q Consensus       236 e~I~~Ll~~il~~~~~~S~Lvn~lsIli~LL~~~r~n~s~--y-~~~~~~l~~~~~~~~~pe~l~~il~~L~~l~~LL~~  312 (822)
                      ++|+|||++||++++++|++|++|++||++++++|.+...  | ..+.....+ ....+.+.++++|.+||++|++||.+
T Consensus       239 e~ieqLl~~ml~~~~s~s~lVs~i~vlI~ll~~~r~~~~~~~~~~i~~q~~~~-~d~~~~~~~l~~~~p~L~dF~~lL~~  317 (838)
T KOG2073|consen  239 ETIEQLLKIMLEDGTSLSVLVSGIIVLISLLNPRRDTVETNSTTTILSQPPSE-RDPIVLNELLGAMEPRLGDFVQLLLE  317 (838)
T ss_pred             HHHHHHHHHHccCCcchhhHHHHHHHHHHhcCcccccccccceeeeecCCccc-cCccchHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999886543  2 322222221 12234567789999999999999999


Q ss_pred             CccccccccccCcccCCCcchhhHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhc-
Q 003408          313 SSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLE-  391 (822)
Q Consensus       313 ~~~~~~l~Tt~G~l~pPLG~~RLKIvELIa~LL~~nn~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile-  391 (822)
                      ++....++||||.++||||++|||||||||+||||+++.+.++++..+++.+++|+||+|+||||||++|+.||..++. 
T Consensus       318 ~~~~~~l~tt~g~l~pPLG~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~~~~~~  397 (838)
T KOG2073|consen  318 PEKLDLLETTYGELEPPLGFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIVENLSD  397 (838)
T ss_pred             CccchhhhhhhhccCCCcchHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHHHhhhc
Confidence            9988899999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             --------CCChHHHHHHhhhcchHHHHHHHhhccccc--CCCCCCCCCCCCCCCCcchHHHHHHHH-HHHHHhcC---C
Q 003408          392 --------CKNAPLIEHLLHECNLVGKILEAEKNFTLK--DSNKPTVPAEGRLPPRIGNIGHLTRIS-NKLIQLGN---N  457 (822)
Q Consensus       392 --------~~n~~L~~~Lf~~~~Li~rIlea~k~~~~~--~~nk~t~~~~gk~~~R~GYMGHLt~IA-N~Lv~~~~---~  457 (822)
                              +.+..++.|++++|+|+.+|++++++....  ..++++..+.|+...|.|||||++||| |.++++..   .
T Consensus       398 ~~~~~~~~s~~~~~v~~~l~~c~l~~~~l~~~e~~e~~~~d~~~~~~~a~g~~~~~~g~~~h~~R~~pn~~vq~~~~~~~  477 (838)
T KOG2073|consen  398 ETNNDSNISADNEIVDHLLQDCQLSDNILNQWEDSEEDEGDEDDPSDGAFGGKEYRNGPIGHLTRIAPNVGDQLKIKLED  477 (838)
T ss_pred             cccccccCCCchHHHHHHHHHhhhhhhhhhcccccchhccccccchhhhhcCCcccCCccceeeecCcchhhhccccccc
Confidence                    788999999999999999999998876543  233567778877557999999999999 99999643   6


Q ss_pred             cHHHHHHHh--cchhHHHHHHHHhh------hhhhhhhhhhccCC-CCCccCCCCCCCCcccccCCcchHHHHHhhhhhh
Q 003408          458 NSEIHAYLQ--ENSEWNDWQINVLS------KRNTLENIYQWACG-RPTALHDRGRDSDDDDYQNRDYDVAALANNLSQA  528 (822)
Q Consensus       458 ~~~I~~~Lq--~~~~W~~f~~~~L~------k~N~venv~~~~~G-~p~~~~d~~~~sDddd~~d~d~d~~~~~~~l~qa  528 (822)
                      ...|+++|+  .+..|..|...++.      ++|.++++|.|.|| ++...+++.+..|++++.+++|++.+.+.++.++
T Consensus       478 ~~~i~~~L~~f~~~~w~~we~~v~~di~~~~~nn~v~~~y~~~~~~~~~~~id~~~~~~e~~~~d~~~~~~~~~~~i~~~  557 (838)
T KOG2073|consen  478 TNIISTLLEGFPEEPWNNWEHNVLFDIEQQIFNNTVDNSYNDFLGYLTSNFIDLTRFNDEEEKADRDYDVMGHLDNIADH  557 (838)
T ss_pred             hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCccchhhhhhhhhccHHHHhhhccccchhhccccccchhhhhHhhhh
Confidence            788999998  45789999888876      99999999999999 5999999999999988899999999999999998


Q ss_pred             -hhhccccCCchhhhccccccCCCccccCCCccceeeec---cccccccCCCcccc-cCCcccccccccccccccCCCCC
Q 003408          529 -FRYGIYSNDDVDEAQGSLERDDEDVYFDDESAEVVISS---LRLGDDQESGSLFT-NSNWFAFEDDRVSHERAAGSLAS  603 (822)
Q Consensus       529 -f~y~~~~~~d~~e~~~~~~~~~ed~~~~~~s~~~~~s~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  603 (822)
                       |+|+++.+..+.|..+...+  +..|||||+++|++++   +||||++..+++++ |++|++|+|++....++....  
T Consensus       558 ~F~~~~de~~~~~e~~~~~~~--~~q~~~dE~~~~~l~~~~~~~lgd~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--  633 (838)
T KOG2073|consen  558 NFSINIDENSPNAEDLEVEDR--LIQYFDDEKAETVLGAMGQLRLGDEDSEDSLKTWNGEELAGQDDKFDINDSEQDS--  633 (838)
T ss_pred             hccccccccCchhhhhhhhcc--ccccccccchheeecccccccccchhhhhhhhccccccccccccccCCCcccccc--
Confidence             99999999999999988888  8999999999999999   99999999999998 999999999977777644432  


Q ss_pred             CCCCccccCC-------CCCCCCCceeeccC-CCccccccCCCCCCCCCCCCCCCCCCCCcccCCCC--CCCCCcceecc
Q 003408          604 PSPNIEETGV-------TNGGGHDQVTVGED-DLDDTATSAAVPVSKSEDSDVGKLPNDSVETGSCT--TEKPPTWVEWR  673 (822)
Q Consensus       604 ~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  673 (822)
                       .....++..       ...++++..++|+- +...+.++-.. +...... ....+. .+...|+.  ++..|.|+.|.
T Consensus       634 -~~~~~D~e~~~t~n~~~~~~d~~~~~~~~~~~~~~~e~~~~~-~~~~~~~-~~~~~~-~~~~~p~~~~~~~~p~p~~~~  709 (838)
T KOG2073|consen  634 -YSGFFDVEEWETYNADEDNDDDTSSVIGEGGESPTGEPSWGE-DSDENGS-ADSTDG-TDEFTPDHPETENSPSPSKPP  709 (838)
T ss_pred             -cccccccccccCCCCccccccchhhhhhhcCCCCCCcccccc-CCCCCcc-cccCCC-ccccCCCCCcccCCCCCCCCc
Confidence             111111111       12223345566664 33323233222 2222111 111111 11122222  25668999999


Q ss_pred             cCCCCCCCCCCCCCcccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCccccccCCccCCCCCCCCCCCCCCCC
Q 003408          674 ERPDSSNPSSADEPVSIPNGELQDQGGNGDVDVPEPSPSSSNTEDANITTTGELSKSIDENPSSKPSEPSESGSP  748 (822)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~p~~~~~~~~p  748 (822)
                      +++....|..+     .|++.+++.++.++........ +..+..+|+..  ++|...+..++..-.++|.|+..
T Consensus       710 ~~~~~v~~~~~-----~~~~d~~s~~~~~n~~~~~~~~-s~~~~~~p~~~--a~~~~~~~~~e~~~~~~~~~~~~  776 (838)
T KOG2073|consen  710 GSAEGVSPKAS-----EPNGDVSSLGEQDNELTDSDEQ-SEGDETIPKRP--AVPDLTGKDTENAVVRSTAPDSE  776 (838)
T ss_pred             cchhccCCccc-----ccccccccccccCCCCCccccc-cccccCCCCCc--cccccccccccccccccCCCccc
Confidence            99887777652     3488888744443332222111 11112222222  56666777766666666655533

>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []	Back alignment and domain information

>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG3546 consensus Collagens (type XV) [Extracellular structures]	Back alignment and domain information

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []	Back alignment and domain information

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		822
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
3gdb_A		937	Endo-D, putative uncharacterized protein SPR0440;	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 61.4 bits (148), Expect = 9e-10
 Identities = 81/497 (16%), Positives = 148/497 (29%), Gaps = 167/497 (33%)

Query: 1   MFWRMAGLSTASPVETILDKENFTLEELLDED---------DIIQECKALNGRLINFLRE 51
           +FW    L   +  ET+L+     L   +D +         +I     ++   L   L+ 
Sbjct: 184 IFW--LNLKNCNSPETVLEMLQ-KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 52  RAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIF--TCEVDII--LKTLVEDEELMNLL 107
           +     L+   V+   ++A+    F     +C+I   T    +   L         ++  
Sbjct: 241 KPYENCLL---VLLNVQNAKAWNAFNL---SCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 108 FSFLEPKDSHSTLLAGYFSKVVICL--LLRKTVPLMHYI--KAHQEIMARL-----VDLI 158
              L P +  S LL  Y       L   +  T P    I  ++ ++ +A       V+  
Sbjct: 295 SMTLTPDEVKS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 159 GITSIMEVLIRLIGADE--HMYTN---FTE---------SMQWIE-DTNVLEMIVDKFSS 203
            +T+I+E  + ++   E   M+     F           S+ W +   + + ++V+K   
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 204 S--------------------------DSPEVHA------NAAETLCSITRSAPPALAAK 231
                                      +   +H       N  +T  S     PP L   
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI-PPYLDQY 472

Query: 232 ISSPNFIGRLFRHALENSRP--KSVLVNSLSICISLLDPKRLTLGTYYMF-NRQLTHGST 288
             S   IG    H L+N     +  L   +      LD         + F  +++ H ST
Sbjct: 473 FYS--HIGH---H-LKNIEHPERMTLFRMV-----FLD---------FRFLEQKIRHDST 512

Query: 289 VTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVG 348
                       G + + L            L  Y                +I       
Sbjct: 513 AWNAS-------GSILNTL--QQ--------LKFYKP--------------YIC------ 535

Query: 349 SEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLV 408
               + +      V  ILD         FL    EN+I S          ++     +L+
Sbjct: 536 ----DNDPKYERLVNAILD---------FLPKIEENLICS----------KY----TDLL 568

Query: 409 GKILEAEKNFTLKDSNK 425
              L AE     ++++K
Sbjct: 569 RIALMAEDEAIFEEAHK 585

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		822
4auo_C		40	Triple-helical collagen peptide; hydrolase-peptide	96.99
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	94.31
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	91.63
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	89.51
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	86.75
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	83.0

>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A {Synthetic construct}	Back alignment and structure

Probab=96.99  E-value=0.0012  Score=50.00  Aligned_cols=9  Identities=33%  Similarity=0.826  Sum_probs=3.3

Q ss_pred             CCCCCCCCC
Q 003408          746 GSPSEPAES  754 (822)
Q Consensus       746 ~~p~~p~~p  754 (822)
                      |.+|.+|.+
T Consensus         4 G~~G~~G~~   12 (40)
T 4auo_C            4 GPPGPPGPQ   12 (40)
T ss_dssp             CCCCCCCCC
T ss_pred             CCCCCCCCC
Confidence            333333333

PyMOL of 4auo

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

Probab=94.31  E-value=2.2  Score=47.65  Aligned_cols=236  Identities=16%  Similarity=0.148  Sum_probs=128.9

Q ss_pred             HHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCc--hHHHHHHHHHhcc-cccccc
Q 003408          103 LMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI--TSIMEVLIRLIGA-DEHMYT  179 (822)
Q Consensus       103 lL~~L~sfL~~~~~ln~llAgyFsKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~--~aImDlLlrLIt~-de~~~~  179 (822)
                      .+..|..+|...  .++.+.-.-+.++..|...++......+   ...+..|++.+..  ..+..-.+..+.. -..   
T Consensus       203 ~l~~Ll~lL~~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~---~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~---  274 (528)
T 4b8j_A          203 ALLPLLAQLNEH--TKLSMLRNATWTLSNFCRGKPQPSFEQT---RPALPALARLIHSNDEEVLTDACWALSYLSDG---  274 (528)
T ss_dssp             CHHHHHHTCCTT--CCHHHHHHHHHHHHHHHCSSSCCCHHHH---TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS---
T ss_pred             cHHHHHHHHhcC--CCHHHHHHHHHHHHHHHcCCCCCcHHHH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC---
Confidence            466777777433  2344445556677777765433322222   4456666665543  2333322222221 111   


Q ss_pred             cchhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceeccce
Q 003408          180 NFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSL  259 (822)
Q Consensus       180 ~~~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lvn~l  259 (822)
                       .....+.+.+.++++.|+..|... +..+...|+..|..|....+ .....+.....+..|+..+-.... ..+...++
T Consensus       275 -~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~A~  350 (528)
T 4b8j_A          275 -TNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRTVGNIVTGDD-AQTQCIIDHQALPCLLSLLTQNLK-KSIKKEAC  350 (528)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCH-HHHHHHHTTTHHHHHHHHHHSCCC-HHHHHHHH
T ss_pred             -CHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHHHHHHHcCCH-HHHHHHHHhhhHHHHHHHHcCCCc-HHHHHHHH
Confidence             112344556678899999988765 57888888888888876433 333344445556666554433211 11111222


Q ss_pred             eeeeecccccccccchhhhhcccccCCCccccCchhhHhHH--HhHHHHHHhhccCccccccccccCcccCCCcchhhHH
Q 003408          260 SICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGML--GRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKI  337 (822)
Q Consensus       260 sIli~LL~~~r~n~s~y~~~~~~l~~~~~~~~~pe~l~~il--~~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKI  337 (822)
                      .++-.|..                       .++..+..++  .-++.|+++|....                -..|..+
T Consensus       351 ~~L~nl~~-----------------------~~~~~~~~~~~~~~i~~L~~lL~~~~----------------~~v~~~a  391 (528)
T 4b8j_A          351 WTISNITA-----------------------GNKDQIQAVINAGIIGPLVNLLQTAE----------------FDIKKEA  391 (528)
T ss_dssp             HHHHHHHT-----------------------SCHHHHHHHHHTTCHHHHHHHHHHSC----------------HHHHHHH
T ss_pred             HHHHHHHC-----------------------CCHHHHHHHHHCCCHHHHHHHHhcCC----------------HHHHHHH
Confidence            21111110                       1122222222  13445556664321                1467788


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhc
Q 003408          338 VEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLE  391 (822)
Q Consensus       338 vELIa~LL~~nn~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile  391 (822)
                      +..+..|...+++.....|++.|+++.++++.-.  -+.-+...+..++..++.
T Consensus       392 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~--~d~~v~~~al~~L~~l~~  443 (528)
T 4b8j_A          392 AWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC--PDIRIVTVCLEGLENILK  443 (528)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC--SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHH
Confidence            9999999888667777888999999999998755  344555556666666653

PyMOL of 4b8j

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

Probab=91.63  E-value=4.4  Score=39.57  Aligned_cols=215  Identities=16%  Similarity=0.170  Sum_probs=116.9

Q ss_pred             HHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHHhhHHHHHHHHhhCch--HHHHHHHHHhcccccccccc
Q 003408          104 MNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGIT--SIMEVLIRLIGADEHMYTNF  181 (822)
Q Consensus       104 L~~L~sfL~~~~~ln~llAgyFsKIv~~LL~rk~~e~l~fL~~~~~ivd~LlkHI~~~--aImDlLlrLIt~de~~~~~~  181 (822)
                      +..|..+|.++.   +-..-.-++++..|..... +....+.. .+.+..|++.+...  .+....+..+..--..   .
T Consensus         4 i~~L~~~L~~~~---~~~~~~a~~~L~~l~~~~~-~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~   75 (252)
T 4hxt_A            4 VEKLVKLLTSTD---SETQKEAARDLAEIASGPA-SAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASG---P   75 (252)
T ss_dssp             HHHHHHHTTCSC---HHHHHHHHHHHHHHHTSCH-HHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS---C
T ss_pred             HHHHHHHHcCCC---HHHHHHHHHHHHHHhcCCc-HHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC---C
Confidence            566777887654   3333344567777766654 33333333 35777777777543  3333333332211100   0


Q ss_pred             hhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceeccceee
Q 003408          182 TESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSI  261 (822)
Q Consensus       182 ~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lvn~lsI  261 (822)
                      ......+.+.+.++.|+..|.. .+.++..+|+..|..|....+. ....+.....+..|++.+-...  ..+...++..
T Consensus        76 ~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~~l~~~~--~~~~~~a~~~  151 (252)
T 4hxt_A           76 DEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDE-AIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARA  151 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHH
T ss_pred             hHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHcCCC--HHHHHHHHHH
Confidence            1234456677899999998874 5688999999999999865432 2223333455555654333221  1122222222


Q ss_pred             eeecccccccccchhhhhcccccCCCccccCchhhHhHHH--hHHHHHHhhccCccccccccccCcccCCCcchhhHHHH
Q 003408          262 CISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVE  339 (822)
Q Consensus       262 li~LL~~~r~n~s~y~~~~~~l~~~~~~~~~pe~l~~il~--~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIvE  339 (822)
                      +-.|..                       ..+.....+..  -+..|+++|..+.                ...|..++.
T Consensus       152 L~~l~~-----------------------~~~~~~~~~~~~~~i~~L~~ll~~~~----------------~~v~~~a~~  192 (252)
T 4hxt_A          152 LANIAS-----------------------GPDEAIKAIVDAGGVEVLVKLLTSTD----------------SEVQKEAAR  192 (252)
T ss_dssp             HHHHTT-----------------------SCHHHHHHHHHTTHHHHHHHHTTCSC----------------HHHHHHHHH
T ss_pred             HHHHHc-----------------------CCHHHHHHHHHCcCHHHHHHHHCCCC----------------HHHHHHHHH
Confidence            222211                       01211222221  3445566664221                257778888


Q ss_pred             HHHHHHhcCcHHHHHHHHHhhhHHHHHHHHh
Q 003408          340 FISVLLTVGSEAAEKELIRHGAVRRILDLFF  370 (822)
Q Consensus       340 LIa~LL~~nn~~i~~~Li~~~ii~~LLdLFF  370 (822)
                      .+..|... ++...+.+.+.|+++.++.+.-
T Consensus       193 ~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~  222 (252)
T 4hxt_A          193 ALANIASG-PTSAIKAIVDAGGVEVLQKLLT  222 (252)
T ss_dssp             HHHHHTTS-BHHHHHHHHHTTHHHHHHHGGG
T ss_pred             HHHHHHcC-CHHHHHHHHHCCCHHHHHHHHC
Confidence            88888763 5556677888898888887764

PyMOL of 4hxt

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

Probab=89.51  E-value=7.2  Score=43.56  Aligned_cols=233  Identities=15%  Similarity=0.142  Sum_probs=115.0

Q ss_pred             HHHHHHhhcCCCCCCChhhhhhHHHHHHHHHhcC-chhHHHHHHHhhHHHHHHHHhhCch--HHHHHHHHHhcc-ccccc
Q 003408          103 LMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRK-TVPLMHYIKAHQEIMARLVDLIGIT--SIMEVLIRLIGA-DEHMY  178 (822)
Q Consensus       103 lL~~L~sfL~~~~~ln~llAgyFsKIv~~LL~rk-~~e~l~fL~~~~~ivd~LlkHI~~~--aImDlLlrLIt~-de~~~  178 (822)
                      .+..|..+|..   .++-+...-+.++..|.... +..-  +.. ...++..|++.+...  .+..-.+..+.. -..  
T Consensus       216 ~l~~L~~ll~~---~~~~v~~~a~~~L~~L~~~~~~~~~--~~~-~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~--  287 (530)
T 1wa5_B          216 AMEPILGLFNS---NKPSLIRTATWTLSNLCRGKKPQPD--WSV-VSQALPTLAKLIYSMDTETLVDACWAISYLSDG--  287 (530)
T ss_dssp             CHHHHHHGGGS---CCHHHHHHHHHHHHHHHCCSSSCCC--HHH-HGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS--
T ss_pred             cHHHHHHHhcc---CCHHHHHHHHHHHHHHhCCCCCCCc--HHH-HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--
Confidence            46666677754   23333334455666666543 2111  111 134566666655432  222222222221 111  


Q ss_pred             ccchhhhHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceeccc
Q 003408          179 TNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNS  258 (822)
Q Consensus       179 ~~~~~il~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lvn~  258 (822)
                        ....++.+.+.++++.|+..|.. .+..+..+|..+|..|....+. ..+.+.....+..|+..+-.. . ..+-..+
T Consensus       288 --~~~~~~~~~~~~~v~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~-~-~~vr~~A  361 (530)
T 1wa5_B          288 --PQEAIQAVIDVRIPKRLVELLSH-ESTLVQTPALRAVGNIVTGNDL-QTQVVINAGVLPALRLLLSSP-K-ENIKKEA  361 (530)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHTTCS-C-HHHHHHH
T ss_pred             --CHHHHHHHHhcCcHHHHHHHHCC-CChhhHHHHHHHHHHHHcCCHH-HHHHHHHcchHHHHHHHHcCC-C-HHHHHHH
Confidence              11234455567889999999864 4678888888888888754332 222222233444444322211 1 0111111


Q ss_pred             eeeeeecccccccccchhhhhcccccCCCccccCchhhHhHHH--hHHHHHHhhccCccccccccccCcccCCCcchhhH
Q 003408          259 LSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLK  336 (822)
Q Consensus       259 lsIli~LL~~~r~n~s~y~~~~~~l~~~~~~~~~pe~l~~il~--~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLK  336 (822)
                      +..+-.|.                       ...++.+..++.  -++.|+.+|..+.                -..|..
T Consensus       362 ~~aL~~l~-----------------------~~~~~~~~~~~~~~~l~~L~~lL~~~~----------------~~v~~~  402 (530)
T 1wa5_B          362 CWTISNIT-----------------------AGNTEQIQAVIDANLIPPLVKLLEVAE----------------YKTKKE  402 (530)
T ss_dssp             HHHHHHHT-----------------------TSCHHHHHHHHHTTCHHHHHHHHHHSC----------------HHHHHH
T ss_pred             HHHHHHHH-----------------------cCCHHHHHHHHHCCCHHHHHHHHhcCC----------------HHHHHH
Confidence            11111110                       012222222221  3445555554221                146777


Q ss_pred             HHHHHHHHHhcCcH--HHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHh
Q 003408          337 IVEFISVLLTVGSE--AAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCL  390 (822)
Q Consensus       337 IvELIa~LL~~nn~--~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~il  390 (822)
                      ++..+..|......  ...+.+++.|+++.|+++.-.-  +.-+...+..++..++
T Consensus       403 a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~al~aL~~l~  456 (530)
T 1wa5_B          403 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA--DNRIIEVTLDALENIL  456 (530)
T ss_dssp             HHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC--CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHH
Confidence            88888888886554  5556788999999999987542  4444445555555554

PyMOL of 1wa5

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

Probab=86.75  E-value=7.7  Score=43.13  Aligned_cols=165  Identities=15%  Similarity=0.120  Sum_probs=92.8

Q ss_pred             hHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceeccceeeeee
Q 003408          185 MQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICIS  264 (822)
Q Consensus       185 l~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lvn~lsIli~  264 (822)
                      .+.+.+.++++.|+..|....+..+...|+..|+.|....+ .....+.....+..|+..+-...  ..+...++..+-.
T Consensus       321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~-~~~~~~~~~~~i~~L~~lL~~~~--~~v~~~a~~aL~n  397 (528)
T 4b8j_A          321 TQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK-DQIQAVINAGIIGPLVNLLQTAE--FDIKKEAAWAISN  397 (528)
T ss_dssp             HHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTCHHHHHHHHHHSC--HHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCH-HHHHHHHHCCCHHHHHHHHhcCC--HHHHHHHHHHHHH
Confidence            34555678899999999876688999999999999986433 22223333344444444332221  0111111111111


Q ss_pred             cccccccccchhhhhcccccCCCccccCchhhHhHH--HhHHHHHHhhccCccccccccccCcccCCCcchhhHHHHHHH
Q 003408          265 LLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGML--GRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFIS  342 (822)
Q Consensus       265 LL~~~r~n~s~y~~~~~~l~~~~~~~~~pe~l~~il--~~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIvELIa  342 (822)
                      |..                      ...++....++  .-+..|+.+|..+.                -..|..++..+.
T Consensus       398 l~~----------------------~~~~~~~~~l~~~~~i~~L~~lL~~~d----------------~~v~~~al~~L~  439 (528)
T 4b8j_A          398 ATS----------------------GGSHDQIKYLVSEGCIKPLCDLLICPD----------------IRIVTVCLEGLE  439 (528)
T ss_dssp             HHH----------------------HSCHHHHHHHHHTTCHHHHHHGGGCSC----------------HHHHHHHHHHHH
T ss_pred             HHc----------------------CCCHHHHHHHHHCCCHHHHHHHHcCCC----------------HHHHHHHHHHHH
Confidence            110                      00122233332  13445666665321                146677888888


Q ss_pred             HHHhcCcH----------HHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhcC
Q 003408          343 VLLTVGSE----------AAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLEC  392 (822)
Q Consensus       343 ~LL~~nn~----------~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile~  392 (822)
                      .|+.....          .....+.+.|.+..|.+|  .+.-|.-++.....|+..++..
T Consensus       440 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L--~~~~~~~v~~~a~~il~~~~~~  497 (528)
T 4b8j_A          440 NILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENL--QSHDNNEIYEKAVKILEAYWMD  497 (528)
T ss_dssp             HHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHG--GGCSSHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHH--HcCCCHHHHHHHHHHHHHHCCC
Confidence            88875432          234566778888888775  4455777788888888888754

PyMOL of 4b8j

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

Probab=83.00  E-value=39  Score=35.95  Aligned_cols=161  Identities=15%  Similarity=0.144  Sum_probs=86.8

Q ss_pred             hHHHhhhHHHHHHHHhcCCCCCHHHHhhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcceeccceeeeee
Q 003408          185 MQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICIS  264 (822)
Q Consensus       185 l~WL~eq~LI~~Ll~~L~~s~s~ev~~NaaeiL~~IIr~spn~L~~~L~S~e~I~~Ll~~il~~~~~~S~Lvn~lsIli~  264 (822)
                      ...+.+.++++.|+..|. ..+..+...|+..|..|....+. ..+.+.....+..|+..+-. .. ..+-..++..+-.
T Consensus       227 ~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~-~~-~~vr~~a~~~L~~  302 (450)
T 2jdq_A          227 IQAVIDAGVCRRLVELLM-HNDYKVVSPALRAVGNIVTGDDI-QTQVILNCSALQSLLHLLSS-PK-ESIKKEACWTISN  302 (450)
T ss_dssp             HHHHHHTTTHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHH-HHHHHHTTTHHHHHHHHTTC-SS-HHHHHHHHHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHC-CCchhHHHHHHHHHHHHhhCChH-HHHHHHHCccHHHHHHHHcC-CC-HHHHHHHHHHHHH
Confidence            344556778999999886 45678888888988888765432 22223333444444443222 11 1111111111111


Q ss_pred             cccccccccchhhhhcccccCCCccccCchhhHhHHH--hHHHHHHhhccCccccccccccCcccCCCcchhhHHHHHHH
Q 003408          265 LLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFIS  342 (822)
Q Consensus       265 LL~~~r~n~s~y~~~~~~l~~~~~~~~~pe~l~~il~--~L~~l~~LL~~~~~~~~l~Tt~G~l~pPLG~~RLKIvELIa  342 (822)
                      |.                       ...+.....++.  -++.|+++|..+.                -..|..++..+.
T Consensus       303 l~-----------------------~~~~~~~~~~~~~~~l~~L~~~l~~~~----------------~~v~~~a~~~L~  343 (450)
T 2jdq_A          303 IT-----------------------AGNRAQIQTVIDANIFPALISILQTAE----------------FRTRKEAAWAIT  343 (450)
T ss_dssp             HT-----------------------TSCHHHHHHHHHTTHHHHHHHHHHHSC----------------HHHHHHHHHHHH
T ss_pred             HH-----------------------cCCHHHHHHHHHCCCHHHHHHHHhcCC----------------HHHHHHHHHHHH
Confidence            10                       011222222221  2334555554221                247788888999


Q ss_pred             HHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHh
Q 003408          343 VLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCL  390 (822)
Q Consensus       343 ~LL~~nn~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~il  390 (822)
                      .|...+++...+.+++.++++.|+++.-..  +.-+...+...+..++
T Consensus       344 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~  389 (450)
T 2jdq_A          344 NATSGGSAEQIKYLVELGCIKPLCDLLTVM--DSKIVQVALNGLENIL  389 (450)
T ss_dssp             HHHHHCCHHHHHHHHHHTCHHHHHHGGGSS--CHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHCCCHHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence            988875655566788899999999987643  3334444444444444

PyMOL of 2jdq

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		822
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	91.75
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	86.22
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	85.37

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.75  E-value=3.1  Score=41.51  Aligned_cols=77  Identities=13%  Similarity=0.218  Sum_probs=50.6

Q ss_pred             hhhHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhc----CCChHHHHHHhhhcchH
Q 003408          333 HRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLE----CKNAPLIEHLLHECNLV  408 (822)
Q Consensus       333 ~RLKIvELIa~LL~~nn~~i~~~Li~~~ii~~LLdLFFkYpwNNfLH~~Ve~II~~ile----~~n~~L~~~Lf~~~~Li  408 (822)
                      .|..++..+..|....+......|++.|+++.|++++ +..=..+... ...+|..++.    .....-...+|.++.++
T Consensus       330 v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll-~~~d~~~~~~-~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~  407 (434)
T d1q1sc_         330 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKIIQV-ILDAISNIFQAAEKLGETEKLSIMIEECGGL  407 (434)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHT-TSSCHHHHHH-HHHHHHHHHHHHHTTTCHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHh-cCCCHHHHHH-HHHHHHHHHHHHHhcCCcHHHHHHHHHcCCH
Confidence            5777888888888877666566789999999999876 4443233333 3334444442    23445566677777777


Q ss_pred             HHH
Q 003408          409 GKI  411 (822)
Q Consensus       409 ~rI  411 (822)
                      ++|
T Consensus       408 ~~i  410 (434)
T d1q1sc_         408 DKI  410 (434)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

PyMOL of d1q1sc_

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure