Citrus Sinensis ID: 003409

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820--
MAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEEPAEQPFDINSVPKEVKTQPLAEKKAPGKMPAGLGAPPSGPPSTVDAYEKLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAFEKPEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVASG
cccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHEEEccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccEEEEEEEEEccccEEEEEEEcccccccEEcEEEEEEEcccccccEEEEEEccccccccccEEEEEEEEcccccccEEEEEEEEEEEEEEEccccccccccccccccccccEEEcccccEEEcccccHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHccccccccccccccccccEEEEEEEEEcccEEEEEEEEEEccccEEEEEEEEEcccccHHHHHHHHHHcc
cccHHHcccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEEEcHHHHccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHccccccHHHccHHHcccccHcccccccccccccccccccHHHHHHHHHHHHccHHHHHccccccccccEEcccccccEEEEEEEEEcccEEEEEEEEEEccccEEEEEEEEEEEEccccEEEEEEEEEccccccccccEEEEEccccccccccEEEEEEEEEEEEEEccccccEccccEEEEEEcccEEEcHHHHEEEcccccHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHHccEEccccccccccccEEEEEEEEEEccccEEEEEEEEEEEcccEEEEEEEEEcccHHHHHHHHHHHHcc
maqplvkkdddrddeaeyspflgiekGAVLQEarvfndpqldprrcSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMkdmtsktdMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSltrgtvrsplAQCLLIRYTTQVIREAattqtgdrpfyDFLESCLRHKAEMVIFEAARAITELngvtnrelTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILreeggfeyKKAIVDSIVILIRDipdakengLLHLCEFIEDCEFTYLSTQILHFlgtegpktsdpskyIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRclydgddeepaeqpfdinsvpkevktqplaekkapgkmpaglgappsgppstVDAYEKLLSsipefsdfgklfkssapvelteaETEYAVNVVKHIFDRHVVFQynctntipeqlLENVTVIVDASEAEEFAEVaskplrslpydspgqifgafekpegvpavgkfSNMLRFIVKevdpttgdveddgvedeyqleDLEVVAADYVMKVGVSNFRNawesigpdfervdeyglgprESLAEAVSAVISLlgmqpcegtevvannsrshtcllsgvfIGNVKVLVRLQFGIDGPKEVAMKLAVrseddnvsDMIHEIVASG
maqplvkkdddrddeaEYSPflgiekgaVLQEARVfndpqldprrcSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKelspsadeVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTsltrgtvrsplaqCLLIRYTTQVIREAattqtgdrpfYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNkslisdqnrsIATLAITTllktgnessVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLgtegpktsdpSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDeepaeqpfdinsvpkevKTQPLAEKKAPGKMPAGLGAPPSGPPSTVDAYEKLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVaskplrslpYDSPGQIFGAFEKPEGVPAVGKFSNMLRFIVKEvdpttgdveddgVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLavrseddnvsdMIHEIVASG
MAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSiatlaittllKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEEPAEQPFDINSVPKEVKTQPLAEKKAPGKMpaglgappsgppsTVDAYEKLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDaseaeefaevasKPLRSLPYDSPGQIFGAFEKPEGVPAVGKFSNMLRFIVKEVDPTTgdveddgvedeYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVASG
********************FLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGP****PSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYD*******************************************************L*SIPEFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFA***************GQIFGAFEKPEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLA*******************
**********************GIEKGAVLQ*********LDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEEPAEQPFDINSV*****************************************SIPEFSDFGK**K******LTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAFEKPEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPC***********SHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVAS*
***************AEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEEPAEQPFDINSVPKEVKTQPLAEKKAPGKMPAGL*********TVDAYEKLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAFEKPEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVASG
*****************YSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEEPAEQPFDINSVPKEVK***********************PPSTVDAYEKLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAFEKPEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVAS*
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MAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKSLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDEEPAEQPFDINSVPKEVKTQPLAEKKAPGKMPAGLGAPPSGPPSTVDAYEKLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAFEKPEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVASG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query822 2.2.26 [Sep-21-2011]
Q6Z382889 Coatomer subunit gamma-2 yes no 1.0 0.924 0.804 0.0
Q0WW26886 Coatomer subunit gamma OS yes no 1.0 0.927 0.791 0.0
Q8H852884 Coatomer subunit gamma-1 no no 0.996 0.926 0.773 0.0
Q9I8E6873 Coatomer subunit gamma-2 N/A no 0.974 0.917 0.509 0.0
Q9PUE4873 Coatomer subunit gamma-2 yes no 0.975 0.918 0.503 0.0
A2VE21871 Coatomer subunit gamma-2 yes no 0.973 0.918 0.503 0.0
Q9UBF2871 Coatomer subunit gamma-2 yes no 0.973 0.918 0.501 0.0
Q9QXK3871 Coatomer subunit gamma-2 yes no 0.973 0.918 0.499 0.0
Q66JI9872 Coatomer subunit gamma-2 yes no 0.974 0.918 0.508 0.0
Q9Y678874 Coatomer subunit gamma-1 no no 0.976 0.918 0.496 0.0
>sp|Q6Z382|COPG2_ORYSJ Coatomer subunit gamma-2 OS=Oryza sativa subsp. japonica GN=Os07g0201100 PE=2 SV=1 Back     alignment and function desciption
 Score = 1432 bits (3706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 715/889 (80%), Positives = 768/889 (86%), Gaps = 67/889 (7%)

Query: 1   MAQPLV-KKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQ 59
           MAQPLV KKDDD D+E  YSPFLGIEKGAVLQEARVF+DPQLD RRC QVITKLLYLLNQ
Sbjct: 1   MAQPLVVKKDDDLDEEEYYSPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQ 60

Query: 60  GETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKT 119
           G+TFTK+EATEVFFA TKLFQS+D GLRRMVYLMIKELSPSADEVIIVTSSLMKDM SKT
Sbjct: 61  GDTFTKVEATEVFFATTKLFQSKDAGLRRMVYLMIKELSPSADEVIIVTSSLMKDMNSKT 120

Query: 120 DMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRW 179
           DMYRANAIRVLCRI D TLLTQIERYLKQAIVDKNPVVASAALVSGI+LLQT+PE+VKRW
Sbjct: 121 DMYRANAIRVLCRIIDSTLLTQIERYLKQAIVDKNPVVASAALVSGIYLLQTSPEVVKRW 180

Query: 180 SNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTT 239
           SNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRG+VRSPLAQCLLIRYT+
Sbjct: 181 SNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGSVRSPLAQCLLIRYTS 240

Query: 240 QVIREAA-TTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQL 298
           QVIRE++  +Q GDRPF+DFLESCLR+KAEMVI EAARAITELNGVT+RELTPAITVLQL
Sbjct: 241 QVIRESSMNSQGGDRPFFDFLESCLRNKAEMVILEAARAITELNGVTSRELTPAITVLQL 300

Query: 299 FLSSSKPVLRFAAVRTLNK-----------------SLISDQNRSIATLAITTLLKTGNE 341
           FLSSSKPVLRFAAVRTLNK                 SLISDQNRSIATLAITTLLKTGNE
Sbjct: 301 FLSSSKPVLRFAAVRTLNKVASTHPLAVTNCNIDMESLISDQNRSIATLAITTLLKTGNE 360

Query: 342 SSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYK 401
           SSVDRLMKQ+TNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYK
Sbjct: 361 SSVDRLMKQMTNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYK 420

Query: 402 KAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIR 461
           KAIVDSI+ILIRDIPDAKE+GL HLCEFIEDCEFTY+STQILHFLG EGPKTSDPSKYIR
Sbjct: 421 KAIVDSIIILIRDIPDAKESGLFHLCEFIEDCEFTYMSTQILHFLGNEGPKTSDPSKYIR 480

Query: 462 YIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDE----------- 510
           YIYNRV LENATVRA+AVSTLAKFGA+VD+LKPR+FVLLRRCL+DGDDE           
Sbjct: 481 YIYNRVILENATVRASAVSTLAKFGALVDSLKPRIFVLLRRCLFDGDDEVRDRATLYLKL 540

Query: 511 ------------------------------------EPAEQPFDINSVPKEVKTQPLAEK 534
                                               EP+E PFDI+SV  E K+QPLAEK
Sbjct: 541 LGGEATVGETEKDVNEFLFGSFDIPLVNLETSLQNYEPSEAPFDISSVSLETKSQPLAEK 600

Query: 535 KAPGKMPAGLGAPPSGPPSTVDA-YEKLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVN 593
           K  GK P G  +  SGP  TVDA YEKLLSSIPEF+ FGKLFKSSAPVELTEAETEY+VN
Sbjct: 601 KTTGKKPTGPASALSGPVPTVDASYEKLLSSIPEFAGFGKLFKSSAPVELTEAETEYSVN 660

Query: 594 VVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIF 653
           VVKHI+D HVV QYNCTNTIPEQLLE V V VDASEA+EF+EVA+K LRSLPYDSPGQ F
Sbjct: 661 VVKHIYDGHVVLQYNCTNTIPEQLLEEVVVFVDASEADEFSEVATKSLRSLPYDSPGQTF 720

Query: 654 GAFEKPEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGV 713
            AFEK EGV A GKFSN+L+FIVKEVDP+TG+ +DDGVEDEYQLEDLE+ +ADY++KVGV
Sbjct: 721 VAFEKLEGVLATGKFSNILKFIVKEVDPSTGEADDDGVEDEYQLEDLEITSADYMLKVGV 780

Query: 714 SNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCL 773
           SNFRNAWES+ P+ ERVDEYGLG RESLAEAVSAVI +LGMQPCEGT+VV +NSRSHTCL
Sbjct: 781 SNFRNAWESMDPESERVDEYGLGARESLAEAVSAVIGILGMQPCEGTDVVPSNSRSHTCL 840

Query: 774 LSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVASG 822
           LSGVFIGNVKVLVRL FG+ GPKEVAMKLAVRS+D  +SD IHEIVA+G
Sbjct: 841 LSGVFIGNVKVLVRLSFGLSGPKEVAMKLAVRSDDPEISDKIHEIVANG 889
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q0WW26|COPG_ARATH Coatomer subunit gamma OS=Arabidopsis thaliana GN=At4g34450 PE=1 SV=2 Back     alignment and function description
>sp|Q8H852|COPG1_ORYSJ Coatomer subunit gamma-1 OS=Oryza sativa subsp. japonica GN=Os03g0227000 PE=2 SV=2 Back     alignment and function description
>sp|Q9I8E6|COPG2_TAKRU Coatomer subunit gamma-2 OS=Takifugu rubripes GN=copg2 PE=3 SV=1 Back     alignment and function description
>sp|Q9PUE4|COPG2_DANRE Coatomer subunit gamma-2 OS=Danio rerio GN=copg2 PE=2 SV=2 Back     alignment and function description
>sp|A2VE21|COPG2_BOVIN Coatomer subunit gamma-2 OS=Bos taurus GN=COPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q9UBF2|COPG2_HUMAN Coatomer subunit gamma-2 OS=Homo sapiens GN=COPG2 PE=1 SV=1 Back     alignment and function description
>sp|Q9QXK3|COPG2_MOUSE Coatomer subunit gamma-2 OS=Mus musculus GN=Copg2 PE=2 SV=1 Back     alignment and function description
>sp|Q66JI9|COPG2_XENTR Coatomer subunit gamma-2 OS=Xenopus tropicalis GN=copg2 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y678|COPG1_HUMAN Coatomer subunit gamma-1 OS=Homo sapiens GN=COPG1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query822
224077826885 predicted protein [Populus trichocarpa] 0.996 0.925 0.852 0.0
224105405886 predicted protein [Populus trichocarpa] 1.0 0.927 0.851 0.0
449465393887 PREDICTED: coatomer subunit gamma-like [ 1.0 0.926 0.848 0.0
359475304887 PREDICTED: coatomer subunit gamma-2-like 1.0 0.926 0.861 0.0
255536821887 coatomer gamma subunit, putative [Ricinu 1.0 0.926 0.859 0.0
356545247887 PREDICTED: coatomer subunit gamma-like [ 1.0 0.926 0.845 0.0
356538767887 PREDICTED: coatomer subunit gamma-2-like 1.0 0.926 0.841 0.0
357467249887 Coatomer subunit gamma [Medicago truncat 1.0 0.926 0.829 0.0
356517094882 PREDICTED: coatomer subunit gamma-like [ 0.995 0.927 0.831 0.0
356508418886 PREDICTED: coatomer subunit gamma-like [ 1.0 0.927 0.832 0.0
>gi|224077826|ref|XP_002305424.1| predicted protein [Populus trichocarpa] gi|222848388|gb|EEE85935.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1534 bits (3972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 754/884 (85%), Positives = 800/884 (90%), Gaps = 65/884 (7%)

Query: 1   MAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQG 60
           MAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQG
Sbjct: 1   MAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQG 60

Query: 61  ETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTD 120
           ++FTK+EATEVFF+VTKLFQS+D+GLRRMVYL+IKELSPSADEVIIVTSSLMKDM SKTD
Sbjct: 61  DSFTKVEATEVFFSVTKLFQSKDLGLRRMVYLIIKELSPSADEVIIVTSSLMKDMNSKTD 120

Query: 121 MYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWS 180
           MYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQT PEIVKRWS
Sbjct: 121 MYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWS 180

Query: 181 NEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQ 240
           NEVQEAVQSRAALVQFHALALL QIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYT+Q
Sbjct: 181 NEVQEAVQSRAALVQFHALALLQQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTSQ 240

Query: 241 VIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFL 300
           VIRE ++TQTGDRPFYDFLESCLRHKAEMVIFEAARAITEL+GVT+RELTPAITVLQLFL
Sbjct: 241 VIRE-SSTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELSGVTSRELTPAITVLQLFL 299

Query: 301 SSSKPVLRFAAVRTLNK-----------------SLISDQNRSIATLAITTLLKTGNESS 343
           SSSKPVLRFAAVRTLNK                 SLISDQNRSIATLAITTLLKTGNESS
Sbjct: 300 SSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESS 359

Query: 344 VDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKA 403
           VDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKA
Sbjct: 360 VDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKA 419

Query: 404 IVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYI 463
           IVDSIVILIRDIP+AKE+GLLHLCEFIEDCEFTYLSTQILHFLG EGPKT+DPSKYIRYI
Sbjct: 420 IVDSIVILIRDIPEAKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTTDPSKYIRYI 479

Query: 464 YNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDE------------- 510
           YNRVHLENATVRAAAVSTLAKFGAMVDALKPR+FVLLRRC++D DDE             
Sbjct: 480 YNRVHLENATVRAAAVSTLAKFGAMVDALKPRIFVLLRRCIFDSDDEVRDRATLYLNTLG 539

Query: 511 ----------------------------------EPAEQPFDINSVPKEVKTQPLAEKKA 536
                                             EP+E+PFDI+SVPKEVK+QPL EKKA
Sbjct: 540 GDGEVVETDKEVKTFLFGDLDIPLVNLETSLKNYEPSEEPFDIHSVPKEVKSQPLVEKKA 599

Query: 537 PGKMPAGLGAPPSGPPSTVDAYEKLLSSIPEFSDFGKLFKSSAPVELTEAETEYAVNVVK 596
           PGK PAGLGAPP+GPPSTVDAYE+LLSSIPEFS+FGKLFKSSAPVELTEAETEYAVNVVK
Sbjct: 600 PGKKPAGLGAPPAGPPSTVDAYERLLSSIPEFSNFGKLFKSSAPVELTEAETEYAVNVVK 659

Query: 597 HIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAF 656
           HIFDRHVVFQYNCTNTIPEQLLENV+VIVDASEA++FAEVASKPLRSLPYD+PGQ F AF
Sbjct: 660 HIFDRHVVFQYNCTNTIPEQLLENVSVIVDASEADDFAEVASKPLRSLPYDTPGQTFVAF 719

Query: 657 EKPEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVSNF 716
           EKPEG+  VGKF+NMLRFIVKEVDP+TG+ E+DGVEDEYQLEDLEVVAAD++MKVGVSNF
Sbjct: 720 EKPEGITTVGKFTNMLRFIVKEVDPSTGEAEEDGVEDEYQLEDLEVVAADFMMKVGVSNF 779

Query: 717 RNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSG 776
           RNAWES+G DFERVDEYGLGPRESLAEAVSAVI+LLGMQPCEGTEVVA NSRSHTCLLSG
Sbjct: 780 RNAWESMGDDFERVDEYGLGPRESLAEAVSAVINLLGMQPCEGTEVVATNSRSHTCLLSG 839

Query: 777 VFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVA 820
           V +GNVKVLVRLQFGI+G ++VAMKL+VRSED+ + D IHEIV+
Sbjct: 840 VSLGNVKVLVRLQFGIEGSRDVAMKLSVRSEDEAIGDAIHEIVS 883

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224105405|ref|XP_002313799.1| predicted protein [Populus trichocarpa] gi|222850207|gb|EEE87754.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449465393|ref|XP_004150412.1| PREDICTED: coatomer subunit gamma-like [Cucumis sativus] gi|449496814|ref|XP_004160233.1| PREDICTED: coatomer subunit gamma-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359475304|ref|XP_003631645.1| PREDICTED: coatomer subunit gamma-2-like [Vitis vinifera] gi|297741448|emb|CBI32579.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255536821|ref|XP_002509477.1| coatomer gamma subunit, putative [Ricinus communis] gi|223549376|gb|EEF50864.1| coatomer gamma subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356545247|ref|XP_003541056.1| PREDICTED: coatomer subunit gamma-like [Glycine max] Back     alignment and taxonomy information
>gi|356538767|ref|XP_003537872.1| PREDICTED: coatomer subunit gamma-2-like [Glycine max] Back     alignment and taxonomy information
>gi|357467249|ref|XP_003603909.1| Coatomer subunit gamma [Medicago truncatula] gi|355492957|gb|AES74160.1| Coatomer subunit gamma [Medicago truncatula] Back     alignment and taxonomy information
>gi|356517094|ref|XP_003527225.1| PREDICTED: coatomer subunit gamma-like [Glycine max] Back     alignment and taxonomy information
>gi|356508418|ref|XP_003522954.1| PREDICTED: coatomer subunit gamma-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query822
TAIR|locus:2139479886 AT4G34450 [Arabidopsis thalian 0.385 0.357 0.883 0.0
UNIPROTKB|E1C7T8871 COPG2 "Coatomer subunit gamma" 0.625 0.590 0.566 1.2e-212
ZFIN|ZDB-GENE-000208-8873 copg2 "coatomer protein comple 0.632 0.595 0.554 2.5e-210
UNIPROTKB|A2VE21871 COPG2 "Coatomer subunit gamma- 0.625 0.590 0.557 2.2e-209
UNIPROTKB|Q9UBF2871 COPG2 "Coatomer subunit gamma- 0.624 0.588 0.561 2.9e-209
MGI|MGI:1858683871 Copg2 "coatomer protein comple 0.625 0.590 0.560 4.2e-208
UNIPROTKB|F1SNE9871 COPG2 "Coatomer subunit gamma" 0.625 0.590 0.555 1.1e-207
UNIPROTKB|E2RPG9874 COPG1 "Coatomer subunit gamma" 0.633 0.596 0.553 1.4e-207
UNIPROTKB|Q9Y678874 COPG1 "Coatomer subunit gamma- 0.633 0.596 0.553 2.9e-207
UNIPROTKB|P53620874 COPG1 "Coatomer subunit gamma- 0.633 0.596 0.553 6.1e-207
TAIR|locus:2139479 AT4G34450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1411 (501.8 bits), Expect = 0., Sum P(3) = 0.
 Identities = 281/318 (88%), Positives = 303/318 (95%)

Query:     1 MAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQG 60
             MAQPLVKKDDD DDE EYSPF+GIEKGAVLQEARVFNDPQ+DPRRCSQVITKLLYLLNQG
Sbjct:     1 MAQPLVKKDDDHDDELEYSPFMGIEKGAVLQEARVFNDPQVDPRRCSQVITKLLYLLNQG 60

Query:    61 ETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTD 120
             E+FTK+EATEVFF+VTKLFQS+D GLRRMVYL+IKELSPS+DEVIIVTSSLMKDM SK D
Sbjct:    61 ESFTKVEATEVFFSVTKLFQSKDTGLRRMVYLIIKELSPSSDEVIIVTSSLMKDMNSKID 120

Query:   121 MYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWS 180
             MYRANAIRVLCRI DGTLLTQIERYLKQAIVDKNPVV+SAALVSG+HLL+T PEIVKRWS
Sbjct:   121 MYRANAIRVLCRIIDGTLLTQIERYLKQAIVDKNPVVSSAALVSGLHLLKTNPEIVKRWS 180

Query:   181 NEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQ 240
             NEVQE +QSR+ALVQFHALALLHQIRQNDRLAVSKLV SLTRG+VRSPLAQCLLIRYT+Q
Sbjct:   181 NEVQEGIQSRSALVQFHALALLHQIRQNDRLAVSKLVGSLTRGSVRSPLAQCLLIRYTSQ 240

Query:   241 VIREAATT-QTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLF 299
             VIR+ A   Q+G+RPFY+FLESCLRHKAEMVI EAARAITEL+GVT+RELTPAITVLQLF
Sbjct:   241 VIRDMANHGQSGERPFYEFLESCLRHKAEMVILEAARAITELDGVTSRELTPAITVLQLF 300

Query:   300 LSSSKPVLRFAAVRTLNK 317
             LSS +PVLRFAAVRTLNK
Sbjct:   301 LSSPRPVLRFAAVRTLNK 318
GO:0005198 "structural molecule activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005798 "Golgi-associated vesicle" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030117 "membrane coat" evidence=IEA
GO:0030126 "COPI vesicle coat" evidence=IEA
GO:0030276 "clathrin binding" evidence=ISS
GO:0016020 "membrane" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
GO:0005886 "plasma membrane" evidence=IDA
UNIPROTKB|E1C7T8 COPG2 "Coatomer subunit gamma" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-000208-8 copg2 "coatomer protein complex, subunit gamma 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A2VE21 COPG2 "Coatomer subunit gamma-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UBF2 COPG2 "Coatomer subunit gamma-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1858683 Copg2 "coatomer protein complex, subunit gamma 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SNE9 COPG2 "Coatomer subunit gamma" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RPG9 COPG1 "Coatomer subunit gamma" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y678 COPG1 "Coatomer subunit gamma-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P53620 COPG1 "Coatomer subunit gamma-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0WW26COPG_ARATHNo assigned EC number0.79111.00.9277yesno
Q54HL0COPG_DICDINo assigned EC number0.47010.97560.8930yesno
Q9PUE4COPG2_DANRENo assigned EC number0.50390.97560.9186yesno
Q22498COPG_CAEELNo assigned EC number0.45080.97080.9172yesno
Q6DKD7COPG2_XENLANo assigned EC number0.50280.97440.9185N/Ano
Q6Z382COPG2_ORYSJNo assigned EC number0.80421.00.9246yesno
Q29AE5COPG_DROPSNo assigned EC number0.46350.97320.9111yesno
Q8I0G5COPG_DROMENo assigned EC number0.46810.97320.9060yesno
Q7PVF6COPG_ANOGANo assigned EC number0.48280.95860.9078yesno
A2VE21COPG2_BOVINNo assigned EC number0.50390.97320.9184yesno
P87140COPG_SCHPONo assigned EC number0.40590.96830.8795yesno
Q8H852COPG1_ORYSJNo assigned EC number0.77330.99630.9264nono
Q66JI9COPG2_XENTRNo assigned EC number0.50850.97440.9185yesno
Q9QXK3COPG2_MOUSENo assigned EC number0.49940.97320.9184yesno
Q9I8E6COPG2_TAKRUNo assigned EC number0.50910.97440.9175N/Ano
Q9UBF2COPG2_HUMANNo assigned EC number0.50170.97320.9184yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query822
COG5240898 COG5240, SEC21, Vesicle coat complex COPI, gamma s 0.0
pfam01602522 pfam01602, Adaptin_N, Adaptin N terminal region 1e-136
pfam08752269 pfam08752, Gamma-COP, Coatomer gamma subunit appen 1e-117
COG5096757 COG5096, COG5096, Vesicle coat complex, various su 4e-09
PTZ00429746 PTZ00429, PTZ00429, beta-adaptin; Provisional 5e-04
>gnl|CDD|227565 COG5240, SEC21, Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information 
 Score =  595 bits (1535), Expect = 0.0
 Identities = 298/903 (33%), Positives = 444/903 (49%), Gaps = 108/903 (11%)

Query: 7   KKDDDRDDEAEYSPFLGIEKGAVLQEAR-VFNDPQLDPRRCSQVITKLLYLLNQGETFTK 65
                         F  + +  +LQ+    FN   +  R   ++++ L YLL+ GE F +
Sbjct: 5   TYKKFMKT----KVFTTLTERTLLQDMNESFNKSPVSTRSARKLLSNLFYLLSTGELFPE 60

Query: 66  IEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKT-DMYRA 124
             AT +FFA+ KLFQ +D+ LR+ VY  IKELS   ++V++ TSS+MKD+     D  + 
Sbjct: 61  ATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVLMGTSSIMKDLNGGVPDDVKP 120

Query: 125 NAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQ 184
            AIR L  + DG  +   ERYL QA V  +    SAALV   HLL       KRW NE Q
Sbjct: 121 MAIRSLFSVIDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQ 180

Query: 185 EAVQSRAA----------------LVQFHALALLHQIRQNDRLAVSKLVTSLT-RGTVRS 227
           EAV                     + Q+HAL LL+Q ++ D++A  KLV       ++++
Sbjct: 181 EAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKN 240

Query: 228 PLAQCLLIRYTTQVIREAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELN--GVT 285
            LA  LL+R T ++++E +      RPF   L S L  K EMV  EAARA+  L+   V 
Sbjct: 241 QLAGVLLVRATVELLKENSQALLQLRPF---LNSWLSDKFEMVFLEAARAVCALSEENVG 297

Query: 286 NRELTPAITVLQLFLSSSKPVLRFAAVRTLNK-----------------SLISDQNRSIA 328
           ++ +   ++ L+ FL S++ VLRF+A+R LN+                 SLISD+NR+I+
Sbjct: 298 SQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTIS 357

Query: 329 TLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFL 388
           T AITTLLKTG E ++DRL+  I +F+ D++D FKI+ ++A+RSL L FP K  S ++FL
Sbjct: 358 TYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFL 417

Query: 389 SNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGT 448
            + L +EGG E+KK +VD+I   + + PD+KE  L  LC FIEDCE+  ++ +IL  LG 
Sbjct: 418 GSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGR 477

Query: 449 EGPKTSDPSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMV-DALKPR-VFVLLRRCLYD 506
           EGP+   P KY+R+IYNR+ LEN  VR+AAV  L+KF   + D + P+ V   L+RCL D
Sbjct: 478 EGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLND 537

Query: 507 GDD-------------------------------------------EEPAEQPFDINSVP 523
            DD                                           E+     FD+N V 
Sbjct: 538 QDDEVRDRASFLLRNMRLSDACEPLFSSDELGDIPSLELELIGYISEDSFATAFDVNQVR 597

Query: 524 K----EVKTQPLAEKKAPGKMPAGLGAPPSGPPSTVDA-----YEKLLSSIPEFSDFGKL 574
           K    E+K   L  KK+   +      P     S  D      Y   L SI +   FG+L
Sbjct: 598 KFTEDEMKAINLKRKKSETTLDTTESVPKEDANSKADPNIKTKYADELLSIEQIKPFGQL 657

Query: 575 FKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFA 634
             SS  + LTE E E+ V VVKH+F   +V Q+   NT+    L N  V++  +  ++  
Sbjct: 658 VNSSREIILTEPEAEFVVKVVKHVFKDRLVLQFLLENTLEGIQLSNGIVVLTPTGGDK-- 715

Query: 635 EVASKPLRSLPYDS--PGQIFGAFEKPEGVPAVGKFSNMLRFIVKEVDPTTGDVEDDGVE 692
               + ++    DS         F+K +     G   N L F  KE++  T + ED+G +
Sbjct: 716 --KEESIKVDQIDSSEGTLSIVRFKKLDWDIEEGYVVNGLFFTTKEIEGDTSEPEDEGFQ 773

Query: 693 DEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLL 752
           DEY ++  ++ A D+V  V + NF   ++ +    E           S  + +  ++   
Sbjct: 774 DEYSIDPFQITAGDFVRPVRIKNFPATFDRL--KREITFVLQGDIYASGKKILDKILLNS 831

Query: 753 GMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVS 812
              P E TE   N+S +H   L+G      KV +R++          +K+    E   V+
Sbjct: 832 MKIPTEETE-TPNDSNTHVMKLNGKAYHGTKVSIRVKMVYSMACGCTVKVYCDGESLYVT 890

Query: 813 DMI 815
            ++
Sbjct: 891 QLV 893

Length = 898
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region Back     alignment and domain information
>gnl|CDD|220003 pfam08752, Gamma-COP, Coatomer gamma subunit appendage domain Back     alignment and domain information
>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 822
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 100.0
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 100.0
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 100.0
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 100.0
PTZ00429746 beta-adaptin; Provisional 100.0
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 100.0
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 100.0
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 100.0
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 100.0
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 100.0
COG5096757 Vesicle coat complex, various subunits [Intracellu 100.0
PF08752151 COP-gamma_platf: Coatomer gamma subunit appendage 100.0
PF14806129 Coatomer_b_Cpla: Coatomer beta subunit appendage p 99.75
PF02296113 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal dom 99.69
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.38
PTZ00429746 beta-adaptin; Provisional 99.14
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.93
PRK09687280 putative lyase; Provisional 98.91
PRK09687280 putative lyase; Provisional 98.76
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.71
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.7
PF07718140 Coatamer_beta_C: Coatomer beta C-terminal region; 98.62
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.62
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 98.37
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.26
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 98.24
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.2
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.19
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 98.17
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 98.12
KOG0212675 consensus Uncharacterized conserved protein [Funct 98.12
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 98.09
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 97.98
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 97.94
PF14764459 SPG48: AP-5 complex subunit, vesicle trafficking 97.94
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 97.88
KOG0212675 consensus Uncharacterized conserved protein [Funct 97.85
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.8
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 97.73
COG5096757 Vesicle coat complex, various subunits [Intracellu 97.66
PF14807104 AP4E_app_platf: Adaptin AP4 complex epsilon append 97.62
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 97.58
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 97.52
PF05804708 KAP: Kinesin-associated protein (KAP) 97.39
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.33
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.29
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.23
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.14
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.1
KOG4224550 consensus Armadillo repeat protein VAC8 required f 97.08
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 97.04
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 96.96
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 96.9
TIGR02270410 conserved hypothetical protein. Members are found 96.89
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 96.87
KOG18241233 consensus TATA-binding protein-interacting protein 96.84
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 96.83
PF09066114 B2-adapt-app_C: Beta2-adaptin appendage, C-termina 96.66
KOG2259823 consensus Uncharacterized conserved protein [Funct 96.62
KOG18241233 consensus TATA-binding protein-interacting protein 96.6
KOG2259823 consensus Uncharacterized conserved protein [Funct 96.57
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.56
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 96.54
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.24
KOG04141251 consensus Chromosome condensation complex Condensi 96.05
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 96.01
TIGR02270410 conserved hypothetical protein. Members are found 95.98
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 95.73
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 95.53
KOG1242569 consensus Protein containing adaptin N-terminal re 95.49
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 95.42
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 95.31
KOG0414 1251 consensus Chromosome condensation complex Condensi 95.12
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 94.99
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 94.71
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 94.68
KOG1242569 consensus Protein containing adaptin N-terminal re 94.61
KOG09151702 consensus Uncharacterized conserved protein [Funct 94.58
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 94.54
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 94.41
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 94.06
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 93.99
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 93.49
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 93.38
PF05804708 KAP: Kinesin-associated protein (KAP) 93.24
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 93.15
KOG2973353 consensus Uncharacterized conserved protein [Funct 92.67
PF1036392 DUF2435: Protein of unknown function (DUF2435) 92.59
COG50981128 Chromosome condensation complex Condensin, subunit 92.24
KOG2025 892 consensus Chromosome condensation complex Condensi 92.17
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 92.15
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 92.09
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 91.16
KOG4413524 consensus 26S proteasome regulatory complex, subun 91.08
KOG4199461 consensus Uncharacterized conserved protein [Funct 91.02
COG50981128 Chromosome condensation complex Condensin, subunit 90.58
smart00638574 LPD_N Lipoprotein N-terminal Domain. 90.35
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 89.84
KOG1293678 consensus Proteins containing armadillo/beta-caten 89.63
KOG0413 1529 consensus Uncharacterized conserved protein relate 89.06
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 88.63
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 88.25
KOG2025892 consensus Chromosome condensation complex Condensi 87.12
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 86.96
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 86.89
PF02883115 Alpha_adaptinC2: Adaptin C-terminal domain; InterP 86.88
KOG12481176 consensus Uncharacterized conserved protein [Funct 86.71
KOG2062929 consensus 26S proteasome regulatory complex, subun 86.68
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 86.58
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 86.56
KOG4224550 consensus Armadillo repeat protein VAC8 required f 86.29
KOG09151702 consensus Uncharacterized conserved protein [Funct 85.93
KOG1293678 consensus Proteins containing armadillo/beta-caten 84.52
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 84.49
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 84.2
KOG2956516 consensus CLIP-associating protein [General functi 84.05
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 84.03
KOG04131529 consensus Uncharacterized conserved protein relate 82.34
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 81.47
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 81.46
KOG12401431 consensus Protein kinase containing WD40 repeats [ 80.35
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-143  Score=1193.33  Aligned_cols=803  Identities=60%  Similarity=0.931  Sum_probs=743.6

Q ss_pred             ccCCCCcCCCcccCCcccchhhhHHHHHhhhcCCCCChHHhHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCcc
Q 003409            6 VKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIG   85 (822)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~k~~~lqE~r~f~~~~~~~~k~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~   85 (822)
                      +|||+|+++  .++||.+++|++++||+|.||++|++++||+.+|.||+|++.+|+.|++.|++.+||+|+|+|||+|..
T Consensus         2 ~~~~~~~~~--~s~~f~~l~k~~vlqe~r~fnespvn~r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~   79 (865)
T KOG1078|consen    2 SKKDEEDGG--KSNVFQHLEKTTVLQEARTFNESPVNPRKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVS   79 (865)
T ss_pred             CccchhhcC--CCccccChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHH
Confidence            566655553  368999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHhCCCCcchhhhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 003409           86 LRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSG  165 (822)
Q Consensus        86 lKrl~YL~l~~~~~~~~~~lLviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l~d~~p~VRk~A~la~  165 (822)
                      +|||+|+++++++..++++++++|+++||++..++.+|+.|||+||+|.+..|.+.+++++++++.|++|.|+..|++..
T Consensus        80 LRr~vYl~Ikels~isedviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss  159 (865)
T KOG1078|consen   80 LRRMVYLAIKELSKISEDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSS  159 (865)
T ss_pred             HHHHHHHHHhhccccchhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhhcc
Q 003409          166 IHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVIREA  245 (822)
Q Consensus       166 ~~l~~~~pe~v~~~~~~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~Li~~l~~~~~~~~w~~v~llr~l~~~~~~~  245 (822)
                      +||++.+++.+++|.+++++...+.+.||||||+++||+|+++|+.++.+++..+..+...+|++.|.++|+....+.+ 
T Consensus       160 ~hll~~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~drla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~-  238 (865)
T KOG1078|consen  160 YHLLPISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKNDRLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKE-  238 (865)
T ss_pred             hhhhcccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccchhHHHHHHHHHHHHhhh-
Confidence            9999999999999999999999999999999999999999999999999999988877789999999999999987766 


Q ss_pred             cCCCCCchhhHHHHHHHhccCChhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHHHHHHhhcc--------
Q 003409          246 ATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNK--------  317 (822)
Q Consensus       246 ~~d~~~~~~l~~~l~~~L~~~~~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry~aL~~l~~--------  317 (822)
                        ++.....+++++..+|+|+..+|.|||+++++.+.+.....+.+++..|+.||+++++.+||+|+|+|++        
T Consensus       239 --~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~  316 (865)
T KOG1078|consen  239 --NQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA  316 (865)
T ss_pred             --cccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc
Confidence              4555667899999999999999999999999999877788899999999999999999999999999987        


Q ss_pred             ---------CcCCCCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCcccHHHHHHHH
Q 003409          318 ---------SLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFL  388 (822)
Q Consensus       318 ---------~lL~d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~aI~~la~k~~~~~~~~v~~l  388 (822)
                               .+++|.|++|.+.|+++|+++|+++|++++++++..|+.+++++||+.+|++|..||.+||.++..+++||
T Consensus       317 v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL  396 (865)
T KOG1078|consen  317 VTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFL  396 (865)
T ss_pred             ccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHH
Confidence                     78899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcCCchhHHHhhheecCCCCCCCCChHHHHHHHHhhcc
Q 003409          389 SNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTYLSTQILHFLGTEGPKTSDPSKYIRYIYNRVH  468 (822)
Q Consensus       389 ~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~~~~~~~~~i~wiLGEy~~~~~~~~~~i~~i~~~~~  468 (822)
                      .++|+++|+++++.+++++|..++..+|+.++.++.+||++|+||+++++...+++++|+.|+..++|.+|+|+||||++
T Consensus       397 ~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRvi  476 (865)
T KOG1078|consen  397 SNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVI  476 (865)
T ss_pred             HHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhhccccchHHHHHHHHHHhcCCCCC--------------------------------------
Q 003409          469 LENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLYDGDDE--------------------------------------  510 (822)
Q Consensus       469 ~e~~~vr~~~ltal~K~~~~~~~~~~~i~~ll~~~~~d~d~E--------------------------------------  510 (822)
                      +|+..||+++++|++||++.++.++++|..+++||..|.|+|                                      
T Consensus       477 LEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~~~l~~~~~~l~~s~~~le~~l~  556 (865)
T KOG1078|consen  477 LENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKDDVLNQNYSGLFVSIPGLERSLV  556 (865)
T ss_pred             hhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhhhhhcccccccccccchhHHHHH
Confidence            999999999999999999999999999999999999999999                                      


Q ss_pred             ----CccCCCCCCCCCCccccccchhhhcCCCCCCCCCCCCCCCCCCchhhHhhhhcCCccccccCCccccCCceeeccc
Q 003409          511 ----EPAEQPFDINSVPKEVKTQPLAEKKAPGKMPAGLGAPPSGPPSTVDAYEKLLSSIPEFSDFGKLFKSSAPVELTEA  586 (822)
Q Consensus       511 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ip~~~~~g~~~~~s~~v~lte~  586 (822)
                          +...++||+..+|...+..........  ..+....+........++|..+++.+|+|..+|++++|+.++.|||+
T Consensus       557 ~y~~~~~~~~fd~~~v~~~s~~~~~~~~~~~--k~~~~~~~~~~~~~~~d~~~~~l~~i~~~~~lgpl~kSs~~i~LTE~  634 (865)
T KOG1078|consen  557 SYITGSFATPFDIKSVPVKSQAEEPAINLEL--KQTLVKAPEKEKIPKVDEYAAELASIPEFKALGPLFKSSRPIELTEP  634 (865)
T ss_pred             HHhhccccccchhhcchhhcccccccccccc--cccccCCCcccCCCccchhHHHHhccchhhhcCccccccCcceeccc
Confidence                023344555555533322211111000  00000111222334457899999999999999999999999999999


Q ss_pred             ccceEEEEEEEeecceEEEEEEeecCCCcccceeEEEEEecCCCCCceEEEeccCCCCCCCCCceEEEEEeeCCC--CCc
Q 003409          587 ETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASEAEEFAEVASKPLRSLPYDSPGQIFGAFEKPEG--VPA  664 (822)
Q Consensus       587 e~ey~v~~~kh~~~~~ivl~f~v~Nt~~d~~L~nv~v~l~~~~~~~~~~~~~ip~~~L~~~~~~~~~v~~~~~~~--~~~  664 (822)
                      |+||+|.|+||+|.+|+||||.|+||++||+|+|++|++.+.++  |.+...+|+++|||++++++|+.++.+.+  ..+
T Consensus       635 e~e~~v~~vKh~f~~~~V~qf~~~Ntl~d~~L~~v~vv~~~~~~--~evl~~i~~~slpy~qp~~~~tl~~~p~~~p~~v  712 (865)
T KOG1078|consen  635 EAEYVVKVVKHVFKDHVVLQFDCTNTLNDQLLENVSVVLTPTGG--EEVLEKVPTMSLPYDQPGSAFTLVEFPKDDPWAI  712 (865)
T ss_pred             cceEEeeeeehhhccceEEEEeccCcchHHHHhhheeeecCCCC--ceeeeeccccCCCCCCCcceEEEEEcCCCCchhh
Confidence            99999999999999999999999999999999999999987766  88889999999999999999999988853  358


Q ss_pred             eeeeeceeeeEEeeeCCCCCCCCCCCccceEEccceeecccccccccCcCchHHHHhhcCCCceeEEEEecCCCCcHHHH
Q 003409          665 VGKFSNMLRFIVKEVDPTTGDVEDDGVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEA  744 (822)
Q Consensus       665 ~~~f~~~L~f~v~~~~~~tg~~~~~g~~d~y~L~~l~i~~~dfi~p~~~~~F~~~W~~~~~~~e~~~~~~l~~~~~~~~a  744 (822)
                      +|+|+|+|+|+++||||+||+|+|+||+|||.|||++++++|||+|+..++|.+.|++++  .|.+++|.|+..+++++|
T Consensus       713 ~~sf~~tlkFtvkdcdp~TgepdedGyeDEY~LEdlevtv~D~iqkv~k~NF~aawde~~--~e~eetF~Ls~~~tl~eA  790 (865)
T KOG1078|consen  713 AEGFGNTLKFTVKDCDPNTGEPDDEGYEDEYVLEDLEVTVGDFVQKVRKSNFPAAWDELG--FEAEETFNLSTVKSIQEA  790 (865)
T ss_pred             hccceeeEEEEEEecCCCCCCCCccCcccceeeeceeeehhhhhhHhhcccchhhHHhcC--cchheeeeccccchHHHH
Confidence            889999999999999999999999999999999999999999999999999999999997  678899999999999999


Q ss_pred             HHHHHHhhCCcccCCCccccCCCccceEEEEEEEecCceEEEEEEEeecCCcceEEEEEEecCCcchHHHHHHHHh
Q 003409          745 VSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVA  820 (822)
Q Consensus       745 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ag~~~~~~~vl~~~~~~~~~~~~~~~~~~vRs~~~~v~~~v~~~~~  820 (822)
                      +++|++.+||+||+++|.+|.+++.|+++++|+|+||++||++++++.+++ ||+++++|||+++.+++.+.+.+|
T Consensus       791 v~~Ii~~LgMqpcE~sd~vPenknsHtl~LsG~frgG~~vlvr~~ma~s~~-~vtm~Vtvrs~e~~~vd~Iva~v~  865 (865)
T KOG1078|consen  791 VKKIIDLLGMQPCERTEKVPENKNSHTLLLSGVFRGGYKVLVRAKMALSSG-GITMKVTVRSEDELVVDLIVALVG  865 (865)
T ss_pred             HHHHHHHhCCccccccccCCCCCCceEEEEeeeeeCCceEEEeeeeeecCC-CcEEEEEEecCCccHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999875 599999999999999999998875

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF08752 COP-gamma_platf: Coatomer gamma subunit appendage platform subdomain; InterPro: IPR014863 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF14806 Coatomer_b_Cpla: Coatomer beta subunit appendage platform Back     alignment and domain information
>PF02296 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal domain; InterPro: IPR003164 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query822
3tjz_B355 Crystal Structure Of Arf1 Bound To The GammaZETA-Co 6e-97
1pzd_A322 Structural Identification Of A Conserved Appendage 1e-53
1r4x_A275 Crystal Structure Analys Of The Gamma-Copi Appendag 7e-49
2xa7_B592 Ap2 Clathrin Adaptor Core In Active Complex With Ca 8e-05
2vgl_B591 Ap2 Clathrin Adaptor Core Length = 591 9e-05
>pdb|3TJZ|B Chain B, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 355 Back     alignment and structure 
Iteration: 1

 Score =  352 bits (902), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 187/356 (52%), Positives = 250/356 (70%), Gaps = 21/356 (5%)
Query: 5   LVKKDDDRDDEAE--YSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGET 62
           ++KK D +D+E+    +PF  +EK AVLQEARVFN+  ++PR+C+ ++TK+LYL+NQGE 
Sbjct: 1   MLKKFDKKDEESGGGSNPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEH 60
Query: 63  FTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMTSKTDMY 122
               EATE FFA+TKLFQS D  LRRM YL IKE+S  A++VIIVTSSL KDMT K D Y
Sbjct: 61  LGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDSY 120
Query: 123 RANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNE 182
           R  A+R LC+ITD T+L  IERY+KQAIVDK P V+S+ALVS +HLL+ + ++VKRW NE
Sbjct: 121 RGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNE 180
Query: 183 VQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTTQVI 242
            QEA  S   +VQ+HAL LL+ +R+NDRLAVSK+++  TR  ++SP A C++IR  ++ +
Sbjct: 181 AQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQL 240
Query: 243 REAATTQTGDRPFYDFLESCLRHKAEMVIFEAARAITELNGVTNRELTPAITVLQLFLSS 302
            +   ++  D P +DF+ESCLR+K EMV++EAA AI  L G + +EL PA++VLQLF SS
Sbjct: 241 EDEDGSR--DSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSS 298
Query: 303 SKPVLRFAAVRTLNK-----------------SLISDQNRSXXXXXXXXXXKTGNE 341
            K  LR+AAVRTLNK                 +L++D NRS          KTG+E
Sbjct: 299 PKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLLKTGSE 354
>pdb|1PZD|A Chain A, Structural Identification Of A Conserved Appendage Domain In The Carboxyl-terminus Of The Copi Gamma-subunit Length = 322 Back     alignment and structure
>pdb|1R4X|A Chain A, Crystal Structure Analys Of The Gamma-Copi Appendage Domain Length = 275 Back     alignment and structure
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 592 Back     alignment and structure
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core Length = 591 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query822
1pzd_A322 Coatomer gamma subunit; platform domain, appendage 1e-119
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 1e-117
1r4x_A275 Gamma1-COP, coatomer gamma subunit; appendage, bet 1e-105
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 1e-93
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 2e-32
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 1e-25
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-05
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 1e-04
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 2e-04
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 7e-04
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 4e-04
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 7e-04
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2 Length = 322 Back     alignment and structure
 Score =  361 bits (927), Expect = e-119
 Identities = 128/314 (40%), Positives = 188/314 (59%), Gaps = 9/314 (2%)

Query: 510 EEPAEQPFDINSVPKEVKTQPLAEKKAPGKMPAGLGAPPSGPPSTVDAYEKLLSSIPEFS 569
            EP+E+PFD+ SVP    T PLAE++           P     +  + +++ L+++PEF 
Sbjct: 15  LEPSEKPFDLKSVPLA--TAPLAEQRTESTPVTAAKQPEKVAATRQEIFQEQLAAVPEFQ 72

Query: 570 DFGKLFKSSA-PVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDAS 628
             G LFKSS  PV LTE+ETEY +   KH F  H+VFQ++CTNT+ +Q LENVTV ++ S
Sbjct: 73  GLGPLFKSSPEPVALTESETEYVIRCTKHTFTDHMVFQFDCTNTLNDQTLENVTVQMEPS 132

Query: 629 EAEEFAEVASKPLRSLPYDSPGQIFGAFEKPEGVPA--VGKFSNMLRFIVKEVDPTTGDV 686
           EA E   +   P RSLPY+ PG  +     P+  P      FS +++F VK+ DPTTG+ 
Sbjct: 133 EAYE--VLCYVPARSLPYNQPGTCYTLVALPKEDPTAVACTFSCVMKFTVKDCDPTTGEA 190

Query: 687 EDDGVEDEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVS 746
           +D+G EDEY LEDLEV  AD++ KV   NF  AW+ +G +F++ + + L   ++L EAV 
Sbjct: 191 DDEGYEDEYVLEDLEVTIADHIQKVMKLNFEAAWDEVGDEFQKEETFTLSTIKTLEEAVG 250

Query: 747 AVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRS 806
            ++  LGM PCE ++ V +N  +HT LL+GVF G   +LVR +  +     V M++  RS
Sbjct: 251 NIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLLLL--DTVTMQVTARS 308

Query: 807 EDDNVSDMIHEIVA 820
            ++   D++   V 
Sbjct: 309 SEELPVDIVLASVG 322
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355 Back     alignment and structure
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2 Length = 275 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query822
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 100.0
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 100.0
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 100.0
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 100.0
1r4x_A275 Gamma1-COP, coatomer gamma subunit; appendage, bet 100.0
1pzd_A322 Coatomer gamma subunit; platform domain, appendage 100.0
3hs8_A273 Adaptor protein complex AP-2, alpha 2 subunit; ada 99.93
1kyf_A247 Alpha-adaptin C; protein-peptide complex, endocyto 99.9
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.5
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.41
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.39
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.38
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.26
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.25
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.22
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.19
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.09
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.08
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.07
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.05
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 98.99
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 98.98
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.96
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 98.94
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 98.92
1qgr_A876 Protein (importin beta subunit); transport recepto 98.92
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 98.9
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 98.9
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 98.89
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 98.89
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 98.88
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 98.84
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.82
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 98.73
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.71
1qgr_A876 Protein (importin beta subunit); transport recepto 98.7
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.65
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 98.63
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 98.63
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.62
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 98.61
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 98.61
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.56
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 98.51
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.45
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.44
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.43
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.41
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.36
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.35
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.34
2g30_A258 AP-2 complex subunit beta-1; alpha-helical ARH pep 98.21
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.08
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 97.93
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 97.91
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 97.89
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.85
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.81
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.79
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 97.67
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.62
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 97.57
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.54
2x19_B963 Importin-13; nuclear transport, protein transport; 97.52
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 97.49
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.44
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 97.34
3nmz_A458 APC variant protein; protein-protein complex, arma 97.32
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.3
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 97.29
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 97.24
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 97.16
3nmz_A458 APC variant protein; protein-protein complex, arma 97.06
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 97.05
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 96.98
2x1g_F971 Cadmus; transport protein, developmental protein, 96.95
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 96.95
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 96.86
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 96.7
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 96.64
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 96.55
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 96.49
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 96.39
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 96.32
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 96.31
3grl_A651 General vesicular transport factor P115; vesicle t 96.16
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 95.14
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 95.04
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 94.62
2x1g_F971 Cadmus; transport protein, developmental protein, 94.41
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 93.11
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 92.83
2x19_B963 Importin-13; nuclear transport, protein transport; 92.67
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 92.06
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 91.37
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 90.65
3grl_A651 General vesicular transport factor P115; vesicle t 90.48
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 89.32
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 89.07
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 89.04
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 88.36
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 87.54
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 87.29
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 87.25
1lsh_A1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 87.18
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 86.75
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 86.02
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 85.94
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 83.86
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 80.92
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 80.4
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
Probab=100.00  E-value=5.4e-76  Score=697.41  Aligned_cols=496  Identities=18%  Similarity=0.258  Sum_probs=434.9

Q ss_pred             HHHHHh-hhc-CCCCChHHhHHHHHHHHHHHhcCCCCCccchhhhhhhhhhhcccCCccchhHHHHHHHHhCCCC-cchh
Q 003409           29 VLQEAR-VFN-DPQLDPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSA-DEVI  105 (822)
Q Consensus        29 ~lqE~r-~f~-~~~~~~~k~~~~l~kli~~~~~G~~f~~~e~s~lf~~v~kl~~s~d~~lKrl~YL~l~~~~~~~-~~~l  105 (822)
                      +++|+| .|+ +++.+.++++.+|+|+||++++|+     +++++|++|+|+++|+|+.+||+||||++.+++.. |.++
T Consensus        36 E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~-----d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~  110 (621)
T 2vgl_A           36 ELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGH-----DIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIR  110 (621)
T ss_dssp             HHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSC-----CCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC-----CCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHH
Confidence            445688 788 567888888888999999999999     78899999999999999999999999999999885 5589


Q ss_pred             hhhhhHHhhcCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHhh--cCCCHHHHHHHHHHHHhhcccChhHHH--HHHH
Q 003409          106 IVTSSLMKDMTSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAI--VDKNPVVASAALVSGIHLLQTTPEIVK--RWSN  181 (822)
Q Consensus       106 LviNsl~kDl~~~n~~vr~lALr~l~~I~~~~~~~~l~~~v~~~l--~d~~p~VRk~A~la~~~l~~~~pe~v~--~~~~  181 (822)
                      |+||+|+|||+|+||++||+|||+||+|++++|++++.++|++++  .|++|||||+|++|++|+|+.+|+.++  .|.+
T Consensus       111 L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~  190 (621)
T 2vgl_A          111 LINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTS  190 (621)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHH
Confidence            999999999999999999999999999999999999999999999  999999999999999999999999999  8999


Q ss_pred             HHHHHhcCCChhHHHHHHHHHHHHHhcChHHHHH----HHH---H-----------hcCCCCCChhHHHHHHHHHHhhhh
Q 003409          182 EVQEAVQSRAALVQFHALALLHQIRQNDRLAVSK----LVT---S-----------LTRGTVRSPLAQCLLIRYTTQVIR  243 (822)
Q Consensus       182 ~l~~ll~d~~~~V~~~al~lL~~i~~~d~~~i~~----Li~---~-----------l~~~~~~~~w~~v~llr~l~~~~~  243 (822)
                      .+.++|+|+|++|+.+|+.++++++++++..+..    ++.   +           +.+++.++||+|+++||+++.|.+
T Consensus       191 ~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~  270 (621)
T 2vgl_A          191 RVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPP  270 (621)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSS
T ss_pred             HHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCC
Confidence            9999999999999999999999999988764322    221   1           112225589999999999999865


Q ss_pred             cccCCCCCchhhHHHHHHHhc------------cCC--hhhHHHHHHHHhhccCCChHhHhhHHHHHHHHhcCCCchhHH
Q 003409          244 EAATTQTGDRPFYDFLESCLR------------HKA--EMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRF  309 (822)
Q Consensus       244 ~~~~d~~~~~~l~~~l~~~L~------------~~~--~aV~~ea~~~i~~l~~~~~~~~~~a~~~L~~~l~s~~~n~ry  309 (822)
                      .+  ||+..+.++++|..+++            |.|  +||+|||+++++++.. .+.++..+++.|+.|+.++++|+||
T Consensus       271 ~~--d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~~~~~~L~~~L~~~~~niry  347 (621)
T 2vgl_A          271 PE--DPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLVRACNQLGQFLQHRETNLRY  347 (621)
T ss_dssp             CS--SHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHSSCSCHHHHH
T ss_pred             CC--CHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcCCCcchHH
Confidence            32  45666778888877663            334  4999999999999974 5788889999999999999999999


Q ss_pred             HHHHhhcc-------------------CcCC-CCchhhHHHHHHHHhccCCcchHHHHHHHHHHhhhhcCHHHHHHHHHH
Q 003409          310 AAVRTLNK-------------------SLIS-DQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEA  369 (822)
Q Consensus       310 ~aL~~l~~-------------------~lL~-d~d~sIr~~aL~lL~~l~ne~Nv~~Iv~eL~~y~~~~~~~~k~~~v~a  369 (822)
                      +||+.+.+                   .+|+ |+|++||++||++|++++|++|++.|++||.+|+.+.|.+||.+++.+
T Consensus       348 ~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~  427 (621)
T 2vgl_A          348 LALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLK  427 (621)
T ss_dssp             HHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            99988754                   3567 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCcccHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhCCchHHHHHHHHHHHhhcCCchh-HHHhhheecCC
Q 003409          370 IRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKENGLLHLCEFIEDCEFTY-LSTQILHFLGT  448 (822)
Q Consensus       370 I~~la~k~~~~~~~~v~~l~~lL~~~g~~~v~~~iv~~i~~iv~~~p~~~~~~l~~L~~~l~~~~~~~-~~~~i~wiLGE  448 (822)
                      |+.||+|||++..||+++|+++|+..|++ +.+++|.++++++.++|+.|++++.+|+++++++...+ +.+.++|++||
T Consensus       428 I~~la~k~~~~~~~~v~~Ll~ll~~~~~~-v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGE  506 (621)
T 2vgl_A          428 VAILAEKYAVDYTWYVDTILNLIRIAGDY-VSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGE  506 (621)
T ss_dssp             HHHHHHHHCSSTHHHHHHHHHHHHHHGGG-SCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcc
Confidence            99999999999999999999999999888 88999999999999999999999999999999987664 45677899999


Q ss_pred             CCCCCCC-----hHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhccccchHHHHHHHHHHhc--CCCCC--CccCC----
Q 003409          449 EGPKTSD-----PSKYIRYIYNRVHLENATVRAAAVSTLAKFGAMVDALKPRVFVLLRRCLY--DGDDE--EPAEQ----  515 (822)
Q Consensus       449 y~~~~~~-----~~~~i~~i~~~~~~e~~~vr~~~ltal~K~~~~~~~~~~~i~~ll~~~~~--d~d~E--~~~~~----  515 (822)
                      ||+.+.+     |.++++.+++++..+++.||+++|+|++|++.++|++++.+..+|+.+..  |.|.|  +|+.+    
T Consensus       507 y~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~L  586 (621)
T 2vgl_A          507 FGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDSQLKNADVELQQRAVEYLRL  586 (621)
T ss_dssp             HTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHH
T ss_pred             hHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            9987654     67999999999999999999999999999999999999999999999998  88877  22222    


Q ss_pred             ---------CCCCCCCCccccccchhh
Q 003409          516 ---------PFDINSVPKEVKTQPLAE  533 (822)
Q Consensus       516 ---------~~~~~~~~~~~~~~~~~~  533 (822)
                               ..-+++||+++++++...
T Consensus       587 l~~~~~~~~~~vl~~~P~~~~~~~~ll  613 (621)
T 2vgl_A          587 STVASTDILATVLEEMPPFPERESSIL  613 (621)
T ss_dssp             HHSSCSTTTTTTSSSCCCCCCC-----
T ss_pred             HccCHHHHHHHHhhcCCCCCCcchHHH
Confidence                     223567787766654443
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2 Back     alignment and structure
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2 Back     alignment and structure
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus} Back     alignment and structure
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 822
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 1e-67
d1r4xa1163 b.1.10.3 (A:600-762) Coatomer gamma subunit C-term 1e-67
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 9e-55
d1r4xa2111 d.105.1.2 (A:763-873) Coatomer gamma subunit, C-te 4e-43
d1kyfa2114 d.105.1.1 (A:825-938) Alpa-adaptin AP2, C-terminal 2e-13
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 1e-04
>d1r4xa1 b.1.10.3 (A:600-762) Coatomer gamma subunit C-terminal domain, first subdomain {Human (Homo sapiens) [TaxId: 9606]} Length = 163 Back     information, alignment and structure
>d1r4xa2 d.105.1.2 (A:763-873) Coatomer gamma subunit, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1kyfa2 d.105.1.1 (A:825-938) Alpa-adaptin AP2, C-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query822
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 100.0
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 100.0
d1r4xa1163 Coatomer gamma subunit C-terminal domain, first su 100.0
d1r4xa2111 Coatomer gamma subunit, C-terminal subdomain {Huma 99.92
d1kyfa2114 Alpa-adaptin AP2, C-terminal subdomain {Mouse (Mus 99.79
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.36
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.35
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.23
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.97
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.89
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.65
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.61
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.48
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.44
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.38
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.34
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.29
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.27
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.25
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.18
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.15
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.14
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.1
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.04
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 97.83
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 97.8
d1kyfa1133 Alpha-adaptin AP2 ear domain, N-terminal subdomain 97.79
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.79
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.78
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.46
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.22
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 97.09
d1e42a2113 Beta2-adaptin AP2, C-terminal subdomain {Human (Ho 96.92
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.86
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.73
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 95.1
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 93.5
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 89.74
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 89.33
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 87.97
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 86.73
>d1r4xa1 b.1.10.3 (A:600-762) Coatomer gamma subunit C-terminal domain, first subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r4xa2 d.105.1.2 (A:763-873) Coatomer gamma subunit, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kyfa2 d.105.1.1 (A:825-938) Alpa-adaptin AP2, C-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kyfa1 b.1.10.1 (A:692-824) Alpha-adaptin AP2 ear domain, N-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e42a2 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure