Citrus Sinensis ID: 003417
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 821 | 2.2.26 [Sep-21-2011] | |||||||
| O04408 | 801 | Ent-copalyl diphosphate s | N/A | no | 0.912 | 0.935 | 0.589 | 0.0 | |
| E2IHE0 | 808 | Copal-8-ol diphosphate hy | N/A | no | 0.965 | 0.981 | 0.557 | 0.0 | |
| Q38802 | 802 | Ent-copalyl diphosphate s | yes | no | 0.890 | 0.911 | 0.568 | 0.0 | |
| Q6ET36 | 867 | Ent-copalyl diphosphate s | yes | no | 0.908 | 0.860 | 0.497 | 0.0 | |
| Q6Z5I0 | 800 | Ent-copalyl diphosphate s | no | no | 0.867 | 0.89 | 0.451 | 0.0 | |
| Q6E7D7 | 767 | Syn-copalyl diphosphate s | N/A | no | 0.886 | 0.949 | 0.447 | 0.0 | |
| Q5MQ85 | 800 | Ent-copalyl diphosphate s | N/A | no | 0.867 | 0.89 | 0.451 | 0.0 | |
| Q0JF02 | 767 | Syn-copalyl diphosphate s | no | no | 0.884 | 0.946 | 0.442 | 0.0 | |
| Q947C4 | 873 | Levopimaradiene synthase, | N/A | no | 0.724 | 0.681 | 0.452 | 1e-153 | |
| Q38710 | 868 | Abietadiene synthase, chl | N/A | no | 0.830 | 0.785 | 0.383 | 1e-146 |
| >sp|O04408|KSA_PEA Ent-copalyl diphosphate synthase, chloroplastic OS=Pisum sativum PE=2 SV=1 | Back alignment and function desciption |
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Score = 926 bits (2392), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/779 (58%), Positives = 567/779 (72%), Gaps = 30/779 (3%)
Query: 51 RCSAISRPLIQGEYADVFQNGLPVIKWKEI------VEDDIEEDRIESKVCASNEIKERV 104
RC AIS+ Q EY VFQ + +K EI V DD EE I + V
Sbjct: 42 RCRAISKSRTQ-EYEGVFQTNVATLKLSEINVEDVIVIDDEEEQDIRVGL---------V 91
Query: 105 HAIKSMLGSMEDGEISVSAYDTAWVALVEDIQGSGAPQFPSSLHWIANSQLPDGSWGDHL 164
+ IKS+L S+EDGEI++SAYDTAWVALVED+ PQFPSSL WIA +QL DGSWGD
Sbjct: 92 NKIKSILSSLEDGEITISAYDTAWVALVEDVNAISTPQFPSSLEWIAKNQLQDGSWGDSR 151
Query: 165 LFSAHDRLINTLACVVALRSWNIHHDKCHKGLLFFKENISKLENENDEHMPIGFEVAFPS 224
LFSAHDR+INTLACV+ALRSWN+H +KC KG++FF+EN+SKLENEN+EHMPIGFEVAFPS
Sbjct: 152 LFSAHDRIINTLACVIALRSWNMHSEKCDKGMIFFRENLSKLENENEEHMPIGFEVAFPS 211
Query: 225 LLEIARSLD-IEVPYDSPVLQKIYDKRNLKLTRIPKDIMHNVPTTLLHSLEGMPDLNWQK 283
LLE AR + + P DSP+L+ I++KR+ KLTRIPK+IMH VPTTLLHSLEGM L+W++
Sbjct: 212 LLEGARGIKPLMCPNDSPILKNIFEKRDEKLTRIPKEIMHKVPTTLLHSLEGMSGLDWKQ 271
Query: 284 LLKLQCQDGSFLFSPSSTAYALMQTKDENCLKYLTKAVQRFNGGVPNVYPVDIFEHLWAV 343
LLKLQ QDGSFLFSPSSTA+ALMQTKD NCLKYL V++FNGGVPNVYPVD+FEH+W V
Sbjct: 272 LLKLQSQDGSFLFSPSSTAFALMQTKDGNCLKYLNNVVKKFNGGVPNVYPVDLFEHIWVV 331
Query: 344 DRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYDV 403
DRL+RLGISR+F+ EIK+C++YV + W+E+GICWARN+ VQD+DDT+M FRLLRLHG+ V
Sbjct: 332 DRLERLGISRFFRHEIKDCMNYVSKIWSEKGICWARNSNVQDIDDTAMAFRLLRLHGHQV 391
Query: 404 SAEAFEHFEKGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQFSAKYLKAKT 463
SA F+HFE+ GEFFCF GQ TQAVTG+YNL+RASQVLFPGEKIL HAK FSAK LK K
Sbjct: 392 SAHVFKHFERNGEFFCFAGQCTQAVTGMYNLFRASQVLFPGEKILEHAKHFSAKVLKEKR 451
Query: 464 AA-DLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVWIGKTLYRMPY 522
A +L+DKWII K+LP EV +A+++PWYA L R+ETR YI+QYG E DVWIGKTLYRM Y
Sbjct: 452 EANELIDKWIIMKNLPEEVGYALDMPWYANLDRIETRFYIDQYGAESDVWIGKTLYRMAY 511
Query: 523 VNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKLDKFGITRRALLLAYFVASASIYE 582
VNN+ YLELAKLDYNNCQA H EW+ +Q WY +L +FG+++R LLLAYF+A+ SI+E
Sbjct: 512 VNNNNYLELAKLDYNNCQAQHLIEWNVIQTWYLESRLGEFGLSKRDLLLAYFLATGSIFE 571
Query: 583 PARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCISAWDYINRRRWDSNK 642
P R ER+AWAKT L+ETI Y + R+ F ++F + I DY RR NK
Sbjct: 572 PERSHERLAWAKTTALLETIKCYVRNE----DLRKDFAKKFNDHIDVRDYSIARRMKRNK 627
Query: 643 KGERFAGKTLLGTLNHIALDALVANGRDIGGNLREAWEKWLTTWQDDGNSHWGVAELLVQ 702
++L T+ I+ D ++ G +IG ++ + W+KWL++WQ +G+ G AELL+Q
Sbjct: 628 TEHELV-ESLFATIGEISWDVRLSYGHEIGYDMHQCWKKWLSSWQSEGDKCEGEAELLIQ 686
Query: 703 TINLSAGRLLSEELLCHPEYARLSYLTNRICHTLGHYHKQK--VQVNRNNNIGNNRITAL 760
INL + +SE L LTN ICH L Y K K ++ NI N+
Sbjct: 687 IINLCSNHWISEGPSMQSTIQHLLQLTNSICHKLSCYQKDKELKGISCQENITNSE---- 742
Query: 761 SVEPDMQELVQLVLQNSSSGIGSDVKQTFLTVAKSFYYCAYCDAETINSHIGKVLFQTV 819
VE MQELVQ+V Q + I +VK TF T+AKSFYY A+CD+ TIN HI KVLF+ V
Sbjct: 743 -VESKMQELVQMVFQKCPNDIDFNVKNTFFTIAKSFYYAAFCDSRTINFHIAKVLFEKV 800
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Catalyzes the conversion of geranylgeranyl diphosphate to the gibberellin precursor ent-copalyl diphosphate. Pisum sativum (taxid: 3888) EC: 5EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 3 |
| >sp|E2IHE0|CLDS_CISCR Copal-8-ol diphosphate hydratase, chloroplastic OS=Cistus creticus subsp. creticus GN=CLS PE=1 SV=1 | Back alignment and function description |
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| >sp|Q38802|KSA_ARATH Ent-copalyl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=GA1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q6ET36|CPS1_ORYSJ Ent-copalyl diphosphate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CPS1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6Z5I0|CPS2_ORYSJ Ent-copalyl diphosphate synthase 2 OS=Oryza sativa subsp. japonica GN=CPS2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6E7D7|CPS4_ORYSI Syn-copalyl diphosphate synthase OS=Oryza sativa subsp. indica GN=CPS4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5MQ85|CPS2_ORYSI Ent-copalyl diphosphate synthase 2 OS=Oryza sativa subsp. indica GN=CPS2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q0JF02|CPS4_ORYSJ Syn-copalyl diphosphate synthase OS=Oryza sativa subsp. japonica GN=CPS4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q947C4|TPSD1_GINBI Levopimaradiene synthase, chloroplastic OS=Ginkgo biloba GN=LPS PE=1 SV=1 | Back alignment and function description |
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| >sp|Q38710|TPSDV_ABIGR Abietadiene synthase, chloroplastic OS=Abies grandis GN=AS PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 821 | ||||||
| 224066499 | 795 | copalyl diphosphate synthase [Populus tr | 0.946 | 0.977 | 0.671 | 0.0 | |
| 255559426 | 800 | Ent-kaurene synthase A, chloroplast prec | 0.931 | 0.956 | 0.655 | 0.0 | |
| 224082644 | 807 | copalyl diphosphate synthase [Populus tr | 0.945 | 0.961 | 0.662 | 0.0 | |
| 333394165 | 807 | copalyl diphosphate synthase [Castanea m | 0.942 | 0.959 | 0.665 | 0.0 | |
| 359479685 | 818 | PREDICTED: ent-copalyl diphosphate synth | 0.941 | 0.944 | 0.673 | 0.0 | |
| 296085200 | 828 | unnamed protein product [Vitis vinifera] | 0.941 | 0.933 | 0.666 | 0.0 | |
| 449811539 | 799 | copalyl diphosphate synthase [Pyrus comm | 0.934 | 0.959 | 0.637 | 0.0 | |
| 62005632 | 825 | putative copalyl diphosphate synthase [S | 0.974 | 0.969 | 0.609 | 0.0 | |
| 356503551 | 806 | PREDICTED: ent-copalyl diphosphate synth | 0.917 | 0.934 | 0.619 | 0.0 | |
| 237510825 | 821 | copalyl diphosphate synthase [Coffea ara | 0.940 | 0.940 | 0.619 | 0.0 |
| >gi|224066499|ref|XP_002302110.1| copalyl diphosphate synthase [Populus trichocarpa] gi|222843836|gb|EEE81383.1| copalyl diphosphate synthase [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1099 bits (2842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/794 (67%), Positives = 637/794 (80%), Gaps = 17/794 (2%)
Query: 35 WPFQTKEKRINFNVRPRCSAISRPLIQGEYADVF--QNGLPVIKW-KEIVEDDIEEDRIE 91
W + + K+ NF+ RCSAIS+P QG YAD+F QNGLP+I W ++VEDD EED
Sbjct: 9 WLYGARGKQDNFHAHSRCSAISKPRTQG-YADLFHQQNGLPLINWPHDVVEDDTEED--A 65
Query: 92 SKVCASNEIKERVHAIKSMLGSMEDGEISVSAYDTAWVALVEDIQGSGAPQFPSSLHWIA 151
+KV + EI E V IK+ML MEDGEIS+SAYDTAWVALVEDI GSG PQFPSSL WIA
Sbjct: 66 AKVSVAKEIDEHVKTIKAMLEMMEDGEISISAYDTAWVALVEDINGSGLPQFPSSLQWIA 125
Query: 152 NSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIHHDKCHKGLLFFKENISKLENEND 211
N+QLPDGSWGD +F AHDRLINTLACVVAL+SWN+H +KC KG+LFF++N+ KLE+EN
Sbjct: 126 NNQLPDGSWGDAEIFLAHDRLINTLACVVALKSWNLHQEKCEKGMLFFRDNLCKLEDENA 185
Query: 212 EHMPIGFEVAFPSLLEIARSLDIEVPYDSPVLQKIYDKRNLKLTRIPKDIMHNVPTTLLH 271
EHMPIGFEVAFPSLLEIA+ LDIEVPYDSPVLQ+IY RNLKLTRIPKDIMHNVPTTLLH
Sbjct: 186 EHMPIGFEVAFPSLLEIAKKLDIEVPYDSPVLQEIYASRNLKLTRIPKDIMHNVPTTLLH 245
Query: 272 SLEGMPDLNWQKLLKLQCQDGSFLFSPSSTAYALMQTKDENCLKYLTKAVQRFNGGVPNV 331
SLEGMP L W++LLKLQ QDGSFLFSPSSTA+AL QTKD+NC++YL KAVQRF GGVPNV
Sbjct: 246 SLEGMPGLEWKRLLKLQSQDGSFLFSPSSTAFALSQTKDKNCMEYLNKAVQRFEGGVPNV 305
Query: 332 YPVDIFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSM 391
YPVD+FEH+WAVDRLQRLGISRYF+ +I EC++Y++RYWTE+GICWARN+ V D+DDT+M
Sbjct: 306 YPVDLFEHIWAVDRLQRLGISRYFESQIDECVNYIHRYWTEDGICWARNSEVHDIDDTAM 365
Query: 392 GFRLLRLHGYDVSAEAFEHFEKGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHA 451
GFR+LRL+G+ VSA+ F+HFEKGGEFFCF GQST AVTG++NLYRASQ+LFPGEKIL A
Sbjct: 366 GFRVLRLNGHHVSADVFKHFEKGGEFFCFAGQSTAAVTGMFNLYRASQLLFPGEKILEKA 425
Query: 452 KQFSAKYLKAKTAA-DLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDD 510
K+FS K+L+ K AA +LLDKW+I KDLPGEV FA+E+PW+A LPR+E+R YIEQYGGEDD
Sbjct: 426 KEFSFKFLREKQAANELLDKWLITKDLPGEVGFALEIPWHASLPRVESRFYIEQYGGEDD 485
Query: 511 VWIGKTLYRMPYVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKLDKFGITRRALL 570
VWIGKTLYRMPYVNN+ YL+LA+LDYNNCQA+HR EW + QKWY C L FGI+R+ LL
Sbjct: 486 VWIGKTLYRMPYVNNNEYLQLARLDYNNCQALHRIEWANFQKWYEECNLRDFGISRKTLL 545
Query: 571 LAYFVASASIYEPARWQERIAWAKTAVLVETITSYFDKQKD-SCKQRRAFVREFRNCISA 629
+YF+A+AS++EP R ER+AWAKT +L+E I SYF + D S QRR FV EF IS
Sbjct: 546 YSYFLAAASVFEPERSNERLAWAKTTILLEMIHSYFHEDDDNSGAQRRTFVHEFSTGIS- 604
Query: 630 WDYINRRRWDSNKKGERFAGKTLLGTLNHIALDALVANGRDIGGNLREAWEKWLTTWQDD 689
IN RR KK + K LLGTLN ++ AL +GRDI +LR AWE+WL +W+ +
Sbjct: 605 ---INGRR-SGTKKTRKELVKMLLGTLNQLSFGALEVHGRDISHSLRHAWERWLISWELE 660
Query: 690 GNSHWGVAELLVQTINLSAGRLLSEELLC-HPEYARLSYLTNRICHTLGHYHKQKVQVNR 748
G+ G AELLVQTI+L+AG +SEELL HP+Y +L+ LTNRIC+ LGHY K KV N
Sbjct: 661 GDRRRGEAELLVQTIHLTAGYKVSEELLVYHPQYEQLADLTNRICYQLGHYQKNKVHDNG 720
Query: 749 NNNI---GNNRITALSVEPDMQELVQLVLQNSSSGIGSDVKQTFLTVAKSFYYCAYCDAE 805
+ + +RIT +E DMQEL+QLV+Q +S GI +KQTFL VAKSFYY A+CD
Sbjct: 721 SYSTITGSTDRITTPQIESDMQELMQLVIQKTSDGIDPKIKQTFLQVAKSFYYTAFCDPG 780
Query: 806 TINSHIGKVLFQTV 819
TIN HI KVLF+TV
Sbjct: 781 TINYHIAKVLFETV 794
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559426|ref|XP_002520733.1| Ent-kaurene synthase A, chloroplast precursor, putative [Ricinus communis] gi|223540118|gb|EEF41695.1| Ent-kaurene synthase A, chloroplast precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224082644|ref|XP_002306777.1| copalyl diphosphate synthase [Populus trichocarpa] gi|222856226|gb|EEE93773.1| copalyl diphosphate synthase [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|333394165|gb|AEF32082.1| copalyl diphosphate synthase [Castanea mollissima] | Back alignment and taxonomy information |
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| >gi|359479685|ref|XP_002272869.2| PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|296085200|emb|CBI28695.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449811539|gb|AGF25267.1| copalyl diphosphate synthase [Pyrus communis] | Back alignment and taxonomy information |
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| >gi|62005632|dbj|BAD91286.1| putative copalyl diphosphate synthase [Scoparia dulcis] | Back alignment and taxonomy information |
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| >gi|356503551|ref|XP_003520571.1| PREDICTED: ent-copalyl diphosphate synthase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|237510825|gb|ACQ99373.1| copalyl diphosphate synthase [Coffea arabica] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 821 | ||||||
| TAIR|locus:2140260 | 802 | GA1 "GA REQUIRING 1" [Arabidop | 0.886 | 0.907 | 0.568 | 1.9e-225 | |
| UNIPROTKB|E2IHE0 | 808 | CLS "Copal-8-ol diphosphate hy | 0.822 | 0.835 | 0.582 | 1.4e-215 | |
| UNIPROTKB|Q6ET36 | 867 | CPS1 "Ent-copalyl diphosphate | 0.864 | 0.818 | 0.509 | 7.2e-194 | |
| UNIPROTKB|Q6Z5I0 | 800 | CPS2 "Ent-copalyl diphosphate | 0.867 | 0.89 | 0.455 | 1e-171 | |
| UNIPROTKB|G9MAN7 | 867 | mds "Miltiradiene synthase" [S | 0.617 | 0.584 | 0.443 | 4.5e-114 | |
| TAIR|locus:2206390 | 785 | GA2 "GA REQUIRING 2" [Arabidop | 0.685 | 0.717 | 0.315 | 1.2e-73 | |
| UNIPROTKB|Q84KL6 | 629 | PT1 "(-)-alpha-pinene synthase | 0.322 | 0.421 | 0.382 | 3.9e-46 | |
| UNIPROTKB|Q84KL4 | 627 | PT10 "(-)-alpha-terpineol synt | 0.399 | 0.523 | 0.344 | 1.3e-43 | |
| UNIPROTKB|Q84KL3 | 628 | PT30 "(+)-alpha-pinene synthas | 0.316 | 0.414 | 0.372 | 1.4e-42 | |
| UNIPROTKB|F1CKI9 | 627 | TPS-3car3 "Carene synthase 3, | 0.362 | 0.475 | 0.348 | 2.4e-40 |
| TAIR|locus:2140260 GA1 "GA REQUIRING 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2176 (771.0 bits), Expect = 1.9e-225, P = 1.9e-225
Identities = 433/761 (56%), Positives = 546/761 (71%)
Query: 69 QNGLPVI-KWKXXXXXXXXXXXXXSKVCASNEIKERVHAIKSMLGSMEDGEISVSAYDTA 127
Q+ LP+I +W+ S SN KE V ++K++L ++ DGEI++SAYDTA
Sbjct: 65 QHDLPLIHEWQQLQGEDAPQISVGSN---SNAFKEAVKSVKTILRNLTDGEITISAYDTA 121
Query: 128 WVALVEDIQGSGAPQFPSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNI 187
WVAL++ G P FPS++ WIA +QL DGSWGD LFS HDRLINTLACVVALRSWN+
Sbjct: 122 WVALID--AGDKTPAFPSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNL 179
Query: 188 HHDKCHKGLLFFKENISKLENENDEHMPIGFEVAFPSLLEIARSLDIEVPYDSPVLQKIY 247
+C+KG+ FF+ENI KLE+ENDEHMPIGFEVAFPSLLEIAR ++I+VPYDSPVL+ IY
Sbjct: 180 FPHQCNKGITFFRENIGKLEDENDEHMPIGFEVAFPSLLEIARGINIDVPYDSPVLKDIY 239
Query: 248 DKRNLKLTRIPKDIMHNVPTTLLHSLEGMPDLNWQKLLKLQCQDGSFLFSPSSTAYALMQ 307
K+ LKLTRIPK+IMH +PTTLLHSLEGM DL+W+KLLKLQ QDGSFLFSPSSTA+A MQ
Sbjct: 240 AKKELKLTRIPKEIMHKIPTTLLHSLEGMRDLDWEKLLKLQSQDGSFLFSPSSTAFAFMQ 299
Query: 308 TKDENCLKYLTKAVQRFNGGVPNVYPVDIFEHLWAVDRLQRLGISRYFQPEIKECLDYVY 367
T+D NCL+YL AV+RFNGGVPNV+PVD+FEH+W VDRLQRLGISRYF+ EIKECLDYV+
Sbjct: 300 TRDSNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVH 359
Query: 368 RYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYDVSAEAFEHFEKGGEFFCFVGQSTQA 427
RYWT+ GICWAR + VQD+DDT+M FRLLR HGY VSA+ F++FEK GEFFCFVGQS QA
Sbjct: 360 RYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNFEKEGEFFCFVGQSNQA 419
Query: 428 VTGVYNLYRASQVLFPGEKILGHAKQFSAKYLKAKTAAD-LLDKWIIAKDLPGEVAFAME 486
VTG++NLYRASQ+ FP E+IL +AK+FS YL K + L+DKWII KDLPGE+ FA+E
Sbjct: 420 VTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALE 479
Query: 487 VPWYACLPRLETRLYIEQYGGEDDVWIGKTLYRMPYVNNDVYLELAKLDYNNCQAVHRTE 546
+PWYA LPR+ETR YI+QYGGE+DVWIGKTLYRMPYVNN+ YLELAK DYNNCQA H+ E
Sbjct: 480 IPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLE 539
Query: 547 WDSLQKWYAACKLDKFGITRRALLLAYFVASASIYEPARWQERIAWAKTAVLVETITSYF 606
WD QKWY +L ++G+ R LL Y++A+A+I+E R ER+ WAK++VLV+ I+S F
Sbjct: 540 WDIFQKWYEENRLSEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAISSSF 599
Query: 607 DKQKDSCKQRRAFVREFRNCIS----AWDYINRRRWDSNKKGE----RFAGKTLLGTLNH 658
+ DS RR+F +F I+ + + N R ++ G R AG L+GTLN
Sbjct: 600 GESSDS---RRSFSDQFHEYIANARRSDHHFNDRNMRLDRPGSVQASRLAG-VLIGTLNQ 655
Query: 659 IALDALVANGRDIGGNLREAWEKWLTTWQDDGNSHWGVAELLVQTINLSAGRLLSEELLC 718
++ D +++GRD+ L +W W+ W+ G+ G EL+V+ I L L+
Sbjct: 656 MSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYGDE--GEGELMVKMIILMKNNDLTN-FFT 712
Query: 719 HPEYARLSYLTNRICHTLGHYHKQKVQVXXXXXXXXXXXTALSVEPDMQELVQLVLQNSS 778
H + RL+ + NRIC Y K + T S+E +M ++V+L L S
Sbjct: 713 HTHFVRLAEIINRICLPR-QYLKAR-------RNDEKEKTIKSMEKEMGKMVELAL--SE 762
Query: 779 SGIGSDVKQTFLTVAKSFYYCAYCDAETINSHIGKVLFQTV 819
S DV TFL VAK+FYY A C + + +HI KVLFQ V
Sbjct: 763 SDTFRDVSITFLDVAKAFYYFALC-GDHLQTHISKVLFQKV 802
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| UNIPROTKB|E2IHE0 CLS "Copal-8-ol diphosphate hydratase, chloroplastic" [Cistus creticus subsp. creticus (taxid:483148)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q6ET36 CPS1 "Ent-copalyl diphosphate synthase 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q6Z5I0 CPS2 "Ent-copalyl diphosphate synthase 2" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
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| UNIPROTKB|G9MAN7 mds "Miltiradiene synthase" [Selaginella moellendorffii (taxid:88036)] | Back alignment and assigned GO terms |
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| TAIR|locus:2206390 GA2 "GA REQUIRING 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q84KL6 PT1 "(-)-alpha-pinene synthase, chloroplastic" [Pinus taeda (taxid:3352)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q84KL4 PT10 "(-)-alpha-terpineol synthase, chloroplastic" [Pinus taeda (taxid:3352)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q84KL3 PT30 "(+)-alpha-pinene synthase, chloroplastic" [Pinus taeda (taxid:3352)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1CKI9 TPS-3car3 "Carene synthase 3, chloroplastic" [Picea sitchensis (taxid:3332)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O04408 | KSA_PEA | 5, ., 5, ., 1, ., 1, 3 | 0.5892 | 0.9123 | 0.9350 | N/A | no |
| Q6ET36 | CPS1_ORYSJ | 5, ., 5, ., 1, ., 1, 3 | 0.4974 | 0.9086 | 0.8604 | yes | no |
| Q38802 | KSA_ARATH | 5, ., 5, ., 1, ., 1, 3 | 0.5686 | 0.8903 | 0.9114 | yes | no |
| E2IHE0 | CLDS_CISCR | 4, ., 2, ., 1, ., 1, 3, 3 | 0.5570 | 0.9658 | 0.9814 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 4.2.3 | 0.766 |
| 3rd Layer | 5.5.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 821 | |||
| PLN02592 | 800 | PLN02592, PLN02592, ent-copalyl diphosphate syntha | 0.0 | |
| cd00684 | 542 | cd00684, Terpene_cyclase_plant_C1, Plant Terpene C | 1e-132 | |
| PLN02279 | 784 | PLN02279, PLN02279, ent-kaur-16-ene synthase | 1e-111 | |
| pfam01397 | 177 | pfam01397, Terpene_synth, Terpene synthase, N-term | 9e-55 | |
| pfam03936 | 270 | pfam03936, Terpene_synth_C, Terpene synthase famil | 8e-41 | |
| cd00868 | 284 | cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla | 1e-19 |
| >gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase | Back alignment and domain information |
|---|
Score = 1331 bits (3446), Expect = 0.0
Identities = 580/808 (71%), Positives = 658/808 (81%), Gaps = 21/808 (2%)
Query: 24 SSSFNSELPSFWPFQTKEKRINFNVRPRCSAISRPLIQGEYADVF--QNGLPVI-KWKEI 80
SSSF+S F K+KR N N+ RCSAIS+P Q EYADVF QNGLP+I KW EI
Sbjct: 1 SSSFSS---GVPLFVAKDKRRNGNIHCRCSAISKPRTQ-EYADVFEVQNGLPLINKWHEI 56
Query: 81 VEDDIEEDRIESKVCASNEIKERVHAIKSMLGSMEDGEISVSAYDTAWVALVEDIQGSGA 140
VEDDIEE+ SK SNEIKERV +KSML SMEDGEIS+SAYDTAWVALVEDI GSG
Sbjct: 57 VEDDIEEE--ASKGSVSNEIKERVKTVKSMLSSMEDGEISISAYDTAWVALVEDINGSGT 114
Query: 141 PQFPSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIHHDKCHKGLLFFK 200
PQFPSSL WIAN+QL DGSWGD LFSAHDRLINTLACVVAL+SWN+H +KC KG+ FF+
Sbjct: 115 PQFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLHPEKCEKGMSFFR 174
Query: 201 ENISKLENENDEHMPIGFEVAFPSLLEIARSLDIEVPYDSPVLQKIYDKRNLKLTRIPKD 260
ENI KLE+EN EHMPIGFEVAFPSLLEIA++LDIEVPYDSPVL++IY +RNLKLTRIPKD
Sbjct: 175 ENICKLEDENAEHMPIGFEVAFPSLLEIAKNLDIEVPYDSPVLKEIYAQRNLKLTRIPKD 234
Query: 261 IMHNVPTTLLHSLEGMPDLNWQKLLKLQCQDGSFLFSPSSTAYALMQTKDENCLKYLTKA 320
IMH VPTTLLHSLEGMP L+W+KLLKLQCQDGSFLFSPSSTA+ALMQTKDENCL+YL KA
Sbjct: 235 IMHKVPTTLLHSLEGMPGLDWEKLLKLQCQDGSFLFSPSSTAFALMQTKDENCLEYLNKA 294
Query: 321 VQRFNGGVPNVYPVDIFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARN 380
VQRFNGGVPNVYPVD+FEH+WAVDRLQRLGISRYF+PEIKEC+DYV+RYWTE GICWARN
Sbjct: 295 VQRFNGGVPNVYPVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARN 354
Query: 381 TRVQDLDDTSMGFRLLRLHGYDVSAEAFEHFEKGGEFFCFVGQSTQAVTGVYNLYRASQV 440
+ V D+DDT+MGFRLLRLHG+ VSA+ F+HFEKGGEFFCF GQSTQAVTG++NLYRASQV
Sbjct: 355 SHVHDIDDTAMGFRLLRLHGHQVSADVFKHFEKGGEFFCFAGQSTQAVTGMFNLYRASQV 414
Query: 441 LFPGEKILGHAKQFSAKYLKAKTAAD-LLDKWIIAKDLPGEVAFAMEVPWYACLPRLETR 499
LFPGEKIL +AK+FS+K+L+ K A+ LLDKWII KDLPGEV FA+E+PWYA LPR+ETR
Sbjct: 415 LFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWYASLPRVETR 474
Query: 500 LYIEQYGGEDDVWIGKTLYRMPYVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKL 559
YIEQYGGEDDVWIGKTLYRMPYVNN+ YLELAKLDYNNCQA+H+ EWD+ QKWY C L
Sbjct: 475 FYIEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNL 534
Query: 560 DKFGITRRALLLAYFVASASIYEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAF 619
+FG++R LLLAYF+A+ASI+EP R ER+AWAKT VLVE I+SYF+K+ S KQRRAF
Sbjct: 535 GEFGVSRSELLLAYFLAAASIFEPERSHERLAWAKTTVLVEAISSYFNKET-SSKQRRAF 593
Query: 620 VREFRNCISA--------WDYINRRRWDSNKKGERFAGKTLLGTLNHIALDALVANGRDI 671
+ EF ++ N RR S K GE G LLGTLN ++LDAL A+GRDI
Sbjct: 594 LHEFGYGYKINGRRSDHHFNDRNMRRSGSVKTGEELVG-LLLGTLNQLSLDALEAHGRDI 652
Query: 672 GGNLREAWEKWLTTWQDDGNSHWGVAELLVQTINLSAGRLLSEELLCHPEYARLSYLTNR 731
LR AWE WL W +G+ G AELLV+TINL+AGR LSEELL HP+Y +L+ LTNR
Sbjct: 653 SHLLRHAWEMWLLKWLLEGDGRQGEAELLVKTINLTAGRSLSEELLAHPQYEQLAQLTNR 712
Query: 732 ICHTLGHYHKQKVQVNRNNNIGNNRITALSVEPDMQELVQLVLQNSSSGIGSDVKQTFLT 791
IC+ LGHY K KV +N N T S+E DMQELVQLVLQNSS I +KQTFL
Sbjct: 713 ICYQLGHYKKNKVHINTYNP-EEKSKTTPSIESDMQELVQLVLQNSSDDIDPVIKQTFLM 771
Query: 792 VAKSFYYCAYCDAETINSHIGKVLFQTV 819
VAKSFYY AYCD TIN HI KVLF+ V
Sbjct: 772 VAKSFYYAAYCDPGTINYHIAKVLFERV 799
|
Length = 800 |
| >gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 | Back alignment and domain information |
|---|
| >gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase | Back alignment and domain information |
|---|
| >gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 821 | |||
| PLN02592 | 800 | ent-copalyl diphosphate synthase | 100.0 | |
| PLN02279 | 784 | ent-kaur-16-ene synthase | 100.0 | |
| cd00684 | 542 | Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C | 100.0 | |
| PF01397 | 183 | Terpene_synth: Terpene synthase, N-terminal domain | 100.0 | |
| PF03936 | 270 | Terpene_synth_C: Terpene synthase family, metal bi | 99.94 | |
| cd00868 | 284 | Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp | 99.93 | |
| cd00687 | 303 | Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl | 99.32 | |
| PLN02150 | 96 | terpene synthase/cyclase family protein | 99.1 | |
| cd00385 | 243 | Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym | 98.34 | |
| cd02889 | 348 | SQCY Squalene cyclase (SQCY) domain; found in clas | 97.92 | |
| TIGR01507 | 635 | hopene_cyclase squalene-hopene cyclase. SHC is an | 97.8 | |
| PF13243 | 109 | Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A | 97.7 | |
| cd02892 | 634 | SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; | 97.64 | |
| PF13243 | 109 | Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A | 97.61 | |
| TIGR03463 | 634 | osq_cycl 2,3-oxidosqualene cyclase. This model ide | 97.54 | |
| TIGR01787 | 621 | squalene_cyclas squalene/oxidosqualene cyclases. T | 97.45 | |
| TIGR01787 | 621 | squalene_cyclas squalene/oxidosqualene cyclases. T | 97.11 | |
| cd02892 | 634 | SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; | 97.03 | |
| TIGR01507 | 635 | hopene_cyclase squalene-hopene cyclase. SHC is an | 97.02 | |
| TIGR03463 | 634 | osq_cycl 2,3-oxidosqualene cyclase. This model ide | 96.95 | |
| PF13249 | 113 | Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B | 96.81 | |
| PF13249 | 113 | Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B | 96.73 | |
| cd00688 | 300 | ISOPREN_C2_like This group contains class II terpe | 96.69 | |
| cd02890 | 286 | PTase Protein prenyltransferase (PTase) domain, be | 96.33 | |
| cd00688 | 300 | ISOPREN_C2_like This group contains class II terpe | 96.31 | |
| cd02897 | 292 | A2M_2 Proteins similar to alpha2-macroglobulin (al | 96.28 | |
| cd02896 | 297 | complement_C3_C4_C5 Proteins similar to C3, C4 and | 95.88 | |
| cd02889 | 348 | SQCY Squalene cyclase (SQCY) domain; found in clas | 95.49 | |
| PLN03012 | 759 | Camelliol C synthase | 95.2 | |
| PLN02993 | 763 | lupeol synthase | 95.06 | |
| PLN03012 | 759 | Camelliol C synthase | 94.89 | |
| PLN02993 | 763 | lupeol synthase | 94.82 | |
| ) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432 | 44 | Prenyltrans: Prenyltransferase and squalene oxidas | 94.63 | |
| PF07678 | 246 | A2M_comp: A-macroglobulin complement component; In | 94.37 | |
| cd02891 | 282 | A2M_like Proteins similar to alpha2-macroglobulin | 93.87 | |
| PLN03201 | 316 | RAB geranylgeranyl transferase beta-subunit; Provi | 93.0 | |
| cd02890 | 286 | PTase Protein prenyltransferase (PTase) domain, be | 90.63 | |
| cd02894 | 287 | GGTase-II Geranylgeranyltransferase type II (GGTas | 90.32 | |
| COG1689 | 274 | Uncharacterized protein conserved in archaea [Func | 89.9 | |
| cd02897 | 292 | A2M_2 Proteins similar to alpha2-macroglobulin (al | 88.76 | |
| cd02893 | 299 | FTase Protein farnesyltransferase (FTase)_like pro | 85.96 | |
| TIGR02474 | 290 | pec_lyase pectate lyase, PelA/Pel-15E family. Memb | 83.9 | |
| cd02891 | 282 | A2M_like Proteins similar to alpha2-macroglobulin | 82.2 | |
| cd02895 | 307 | GGTase-I Geranylgeranyltransferase types I (GGTase | 81.31 | |
| cd02894 | 287 | GGTase-II Geranylgeranyltransferase type II (GGTas | 80.54 |
| >PLN02592 ent-copalyl diphosphate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-216 Score=1886.52 Aligned_cols=779 Identities=73% Similarity=1.201 Sum_probs=742.4
Q ss_pred cccccccccccCcccccccccCCcccchhhhhhc--CCcccc-ccchhccchhhhhhhhhhccchhhHHHHHHHHHHHhc
Q 003417 36 PFQTKEKRINFNVRPRCSAISRPLIQGEYADVFQ--NGLPVI-KWKEIVEDDIEEDRIESKVCASNEIKERVHAIKSMLG 112 (821)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (821)
+|+.|+++++++.+.+|+++++|+ |++|.++++ +|.|++ +|+++++||.+++. .+++.++.+++++++||+||.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ir~~l~ 86 (800)
T PLN02592 10 LFVAKDKRRNGNIHCRCSAISKPR-TQEYADVFEVQNGLPLINKWHEIVEDDIEEEA--SKGSVSNEIKERVKTVKSMLS 86 (800)
T ss_pred ccccccccccCceecccccccCCc-ccccccchhcccCCcccccHHhhcccccchhh--ccccchhhHHHHHHHHHHHHh
Confidence 689999999999999999999999 999999974 899975 77888888887774 466778899999999999999
Q ss_pred cCCCCCcccchhhhhhhhccccCCCCCCCCChhHHHHHHhccCCCCCCCCCCCCCchhhHhhhHHHHHHHHhhccCchhh
Q 003417 113 SMEDGEISVSAYDTAWVALVEDIQGSGAPQFPSSLHWIANSQLPDGSWGDHLLFSAHDRLINTLACVVALRSWNIHHDKC 192 (821)
Q Consensus 113 ~~~~g~~S~S~YDTAWVAmvp~~~g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~TLA~vlAL~~w~~~~~~i 192 (821)
+|++|++|||+||||||||||+++|+++||||+||+|||+||++|||||++.+++.+|||+||||||+||++||+++++|
T Consensus 87 ~~~~g~~S~S~YDTAWVAmVp~~~g~~~p~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i 166 (800)
T PLN02592 87 SMEDGEISISAYDTAWVALVEDINGSGTPQFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLHPEKC 166 (800)
T ss_pred cccCCCcCCcHHHhHHHhhcccCCCCCCCCCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhccHHHH
Confidence 99999999999999999999999999999999999999999999999999877889999999999999999999999999
Q ss_pred hhHHHHHHHhHhhhhccCCCCCCceEeEehhHHHHHHHhCCCCCCCCChhhHHHHHHhhhhhcCCCCccccccchhHHHH
Q 003417 193 HKGLLFFKENISKLENENDEHMPIGFEVAFPSLLEIARSLDIEVPYDSPVLQKIYDKRNLKLTRIPKDIMHNVPTTLLHS 272 (821)
Q Consensus 193 ~~Gl~fl~~nl~~~~~~~~~~~~vgfeii~P~Ll~~a~~lgl~~p~~~~~l~~l~~~r~~kL~r~~~~~~~~~p~~llhs 272 (821)
+||++||++|+++|.+++.+++|||||||||+||++|+++||+||++.+.+..|+++|+.||+|++++.+|++|++|+||
T Consensus 167 ~rGl~fi~~nl~~~~~~~~~~~pvGFeIifP~LLe~a~~lgL~~p~~~~~l~~i~~~r~~kL~r~~~~~~~~~p~~llhs 246 (800)
T PLN02592 167 EKGMSFFRENICKLEDENAEHMPIGFEVAFPSLLEIAKNLDIEVPYDSPVLKEIYAQRNLKLTRIPKDIMHKVPTTLLHS 246 (800)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCceEEeeHHHHHHHHHHcCCCCCCCcHHHHHHHHhhHHHHhhCchhhhccCcchHHHH
Confidence 99999999999999877778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcchHHHhhcccCCCcccCCccHHHHHHhccCchhHHHHHHHHHHHhcCCCCCCCccChhHHHHHHHHHHHcCCC
Q 003417 273 LEGMPDLNWQKLLKLQCQDGSFLFSPSSTAYALMQTKDENCLKYLTKAVQRFNGGVPNVYPVDIFEHLWAVDRLQRLGIS 352 (821)
Q Consensus 273 lEgl~~~d~~~v~~~~~~~GS~~~SPSaTAa~l~~~~d~~~l~YL~~~v~~~~g~VP~~yP~d~fe~Lw~VD~LqRLGIs 352 (821)
||||+++||++++++|++|||||+||||||||||+++|++|++||++++++++||||++||+|+||++|+||+||||||+
T Consensus 247 lEgl~~~dw~~v~~~q~~~GS~~~SPSaTAaaL~~~~d~~cl~YL~~~~~k~~GgVP~vyP~d~fE~LwlVDtLqRLGIs 326 (800)
T PLN02592 247 LEGMPGLDWEKLLKLQCQDGSFLFSPSSTAFALMQTKDENCLEYLNKAVQRFNGGVPNVYPVDLFEHIWAVDRLQRLGIS 326 (800)
T ss_pred HhccccCCHHHHhcccCCCCCccCCchHHHHHHhccCchHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhhccccccccCCCCCChHHHHHHHHHHHHcCCccchhhhhccccCCceeeccCCccchHHHHH
Q 003417 353 RYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYDVSAEAFEHFEKGGEFFCFVGQSTQAVTGVY 432 (821)
Q Consensus 353 ~~F~~EI~~~Ld~i~~~~~~~gi~~~~~~~~~DlddTAlaFrlLR~~Gy~VS~dvf~~F~~~g~F~~~~~e~~~dvs~~l 432 (821)
+||++||+++|+++|++|.++|++++++....|+|||||+||+||+|||+||||+|++|+++|+|+|+.+++++|++|||
T Consensus 327 ~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~~~g~F~~~~ge~~~Dv~glL 406 (800)
T PLN02592 327 RYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFEKGGEFFCFAGQSTQAVTGMF 406 (800)
T ss_pred cccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcCCCCccccccccccchHHHH
Confidence 99999999999999999987777776655568999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhccCCCChhHHHHHHHHHHHHHHHHhhc-cchhhhhhcCCChhHHHHhccCccccccchhHHHHHHHHhcCCCcc
Q 003417 433 NLYRASQVLFPGEKILGHAKQFSAKYLKAKTAA-DLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDV 511 (821)
Q Consensus 433 ~Ly~AS~l~~~gE~iL~eA~~fs~~~L~~~~~~-~~~Dkw~~s~~l~~eV~~aL~~P~~~~l~RleaR~yIe~Y~~~~~~ 511 (821)
|||||||+++|||.||++|+.||++||++.+.. .+.|||+++++|++||+|||++|||++|||||||+||++|++++++
T Consensus 407 ~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~~~l~RlEaR~yI~~Y~~~~~~ 486 (800)
T PLN02592 407 NLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWYASLPRVETRFYIEQYGGEDDV 486 (800)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhhcCcchHHHHHHHHHhcCCccc
Confidence 999999999999999999999999999998754 7889999999999999999999999999999999999999988999
Q ss_pred hhhhhhccCCCCCCHHHHHHHHhhhhhhhhchhhhHHHHHHHHHhcCCCcCCcchhhHHHHHHHHhhcccCCcchhHHHH
Q 003417 512 WIGKTLYRMPYVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKLDKFGITRRALLLAYFVASASIYEPARWQERIA 591 (821)
Q Consensus 512 wi~Kt~Yrm~~v~n~~lLeLAklDFn~~Qs~hq~El~~l~rWw~e~~l~~l~faR~r~ve~Yf~aaa~~fEPe~s~~Ri~ 591 (821)
|||||+||||+++|++||||||+|||+||++||+||++|+||||++||++|||+|||++|||||++|++||||||++|++
T Consensus 487 ~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L~~L~faRdr~ve~Yfwa~~~~feP~~s~~Ri~ 566 (800)
T PLN02592 487 WIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNLGEFGVSRSELLLAYFLAAASIFEPERSHERLA 566 (800)
T ss_pred chhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCCCcCCcchhHHHHHHHHHHHhhcCccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhccCCCcHHHHHHHHHHHHh---h-hhhhhhhhcccCCC----chhhHhHHHHHHHHHHHHHHHHH
Q 003417 592 WAKTAVLVETITSYFDKQKDSCKQRRAFVREFRN---C-ISAWDYINRRRWDS----NKKGERFAGKTLLGTLNHIALDA 663 (821)
Q Consensus 592 ~aK~~~L~tviDD~fD~ygts~eEl~~f~~~f~~---~-~~~wD~~~~~~lp~----~~~~k~~f~~aL~~t~nei~~~~ 663 (821)
|||+++|+|+|||+||+||| +|||++||++|++ | ..|||...+++||+ +|.||+|| .|||||+|||+.++
T Consensus 567 ~aK~~~LitviDD~fD~yGt-~eEl~~ft~~v~~~~~~~~~rWd~~~~~~lp~~~~~~~~mki~f-~aLy~tineia~~a 644 (800)
T PLN02592 567 WAKTTVLVEAISSYFNKETS-SKQRRAFLHEFGYGYKINGRRSDHHFNDRNMRRSGSVKTGEELV-GLLLGTLNQLSLDA 644 (800)
T ss_pred HHHHHHHHHhhcccccCCCC-HHHHHHHHHHHHhcccccccccCchhhhcccccccchhHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999999999998 9999999999973 4 35999989999988 34599999 99999999999999
Q ss_pred HHhcCcchHHHHHHHHHHHHHHHhhCCCcccchHHHHHHHHHhccCcccchhhcCChhHHHHHHHHHHHhhhhhhhHHHH
Q 003417 664 LVANGRDIGGNLREAWEKWLTTWQDDGNSHWGVAELLVQTINLSAGRLLSEELLCHPEYARLSYLTNRICHTLGHYHKQK 743 (821)
Q Consensus 664 ~~~~g~~i~~~L~~~W~~l~~~W~~eg~~~~~~~~llv~~~~l~~G~~l~eel~~~p~~~~l~~li~Rl~~DL~t~~~Ek 743 (821)
++.||+||++||+++|.+||++|+.+|+++.|.++++++++++++|+.++|+++++|+|.+++++|+||||||+++++|+
T Consensus 645 ~~~qGr~v~~~L~~~W~~l~~~w~~~g~~s~~~~~ilv~~~~l~~g~~lsee~l~~~~~~~l~~li~Rl~nDl~t~~~e~ 724 (800)
T PLN02592 645 LEAHGRDISHLLRHAWEMWLLKWLLEGDGRQGEAELLVKTINLTAGRSLSEELLAHPQYEQLAQLTNRICYQLGHYKKNK 724 (800)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHhcCceeccchhhHHHHHHHhcCCCCCHHHccchhHHHHHHHHHHHHHhhhHHhhhc
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred hhccccccccchhhhhhcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhccCChHHHHHHHhhccccccC
Q 003417 744 VQVNRNNNIGNNRITALSVEPDMQELVQLVLQNSSSGIGSDVKQTFLTVAKSFYYCAYCDAETINSHIGKVLFQTVD 820 (821)
Q Consensus 744 ~~G~~~YmkE~~~~i~~~iE~~~rEL~qlvl~~~~~~vp~~~Kq~flnvaR~fyY~a~~~~~~ik~hI~kVLfEPI~ 820 (821)
+.+.. +.+++.+++++.||.+||||+++|+++++++||++||++||+|||+|||.+||+|++|+.||++||||||+
T Consensus 725 ~~~~~-~~~~a~~~~~~~ie~~~~eL~~lvl~~~~~~vp~~cK~~f~~~~k~fy~~~~~~~~~~~~~i~~vl~epv~ 800 (800)
T PLN02592 725 VHINT-YNPEEKSKTTPSIESDMQELVQLVLQNSSDDIDPVIKQTFLMVAKSFYYAAYCDPGTINYHIAKVLFERVA 800 (800)
T ss_pred ccCCc-ccHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhCCCCC
Confidence 75432 34466678899999999999999998655689999999999999999999999999999999999999985
|
|
| >PLN02279 ent-kaur-16-ene synthase | Back alignment and domain information |
|---|
| >cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 | Back alignment and domain information |
|---|
| >PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family | Back alignment and domain information |
|---|
| >PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family | Back alignment and domain information |
|---|
| >cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 | Back alignment and domain information |
|---|
| >cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 | Back alignment and domain information |
|---|
| >PLN02150 terpene synthase/cyclase family protein | Back alignment and domain information |
|---|
| >cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 | Back alignment and domain information |
|---|
| >cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold | Back alignment and domain information |
|---|
| >TIGR01507 hopene_cyclase squalene-hopene cyclase | Back alignment and domain information |
|---|
| >PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A | Back alignment and domain information |
|---|
| >cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold | Back alignment and domain information |
|---|
| >PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A | Back alignment and domain information |
|---|
| >TIGR03463 osq_cycl 2,3-oxidosqualene cyclase | Back alignment and domain information |
|---|
| >TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases | Back alignment and domain information |
|---|
| >TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases | Back alignment and domain information |
|---|
| >cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold | Back alignment and domain information |
|---|
| >TIGR01507 hopene_cyclase squalene-hopene cyclase | Back alignment and domain information |
|---|
| >TIGR03463 osq_cycl 2,3-oxidosqualene cyclase | Back alignment and domain information |
|---|
| >PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C | Back alignment and domain information |
|---|
| >PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C | Back alignment and domain information |
|---|
| >cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement | Back alignment and domain information |
|---|
| >cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement | Back alignment and domain information |
|---|
| >cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) | Back alignment and domain information |
|---|
| >cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement | Back alignment and domain information |
|---|
| >cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold | Back alignment and domain information |
|---|
| >PLN03012 Camelliol C synthase | Back alignment and domain information |
|---|
| >PLN02993 lupeol synthase | Back alignment and domain information |
|---|
| >PLN03012 Camelliol C synthase | Back alignment and domain information |
|---|
| >PLN02993 lupeol synthase | Back alignment and domain information |
|---|
| >PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family | Back alignment and domain information |
|---|
| >PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family | Back alignment and domain information |
|---|
| >cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) | Back alignment and domain information |
|---|
| >PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional | Back alignment and domain information |
|---|
| >cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >COG1689 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
| >cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) | Back alignment and domain information |
|---|
| >cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family | Back alignment and domain information |
|---|
| >cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) | Back alignment and domain information |
|---|
| >cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 821 | ||||
| 3pya_A | 727 | Crystal Structure Of Ent-Copalyl Diphosphate Syntha | 0.0 | ||
| 3s9v_A | 785 | Abietadiene Synthase From Abies Grandis Length = 78 | 1e-147 | ||
| 3sae_A | 817 | Structure Of A Three-Domain Sesquiterpene Synthase: | 1e-119 | ||
| 3p5p_A | 764 | Crystal Structure Of Taxadiene Synthase From Pacifi | 1e-112 | ||
| 1hx9_A | 548 | Crystal Structure Of Teas W273s Form 1 Length = 548 | 2e-24 | ||
| 1hxg_A | 548 | Crystal Structure Of Teas W273sC440W Length = 548 | 2e-24 | ||
| 3n0f_A | 555 | Crystal Structure Of Isoprene Synthase From Grey Po | 2e-24 | ||
| 5eas_A | 548 | 5-Epi-Aristolochene Synthase From Nicotiana Tabacum | 3e-24 | ||
| 5eat_A | 548 | 5-Epi-Aristolochene Synthase From Nicotiana Tabacum | 3e-24 | ||
| 1hxc_A | 548 | Crystal Structure Of Teas C440w Length = 548 | 4e-24 | ||
| 4di5_A | 535 | Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt | 4e-24 | ||
| 5eau_A | 548 | 5-Epi-Aristolochene Synthase From Nicotiana Tabacum | 4e-24 | ||
| 3m01_A | 550 | The Crystal Structure Of 5-Epi-Aristolochene Syntha | 4e-24 | ||
| 3lz9_A | 550 | The Crystal Structure Of 5-Epi-Aristolochene Syntha | 1e-23 | ||
| 2ong_A | 543 | Crystal Structure Of Of Limonene Synthase With 2- F | 2e-22 | ||
| 1n1b_A | 549 | Crystal Structure Of (+)-bornyl Diphosphate Synthas | 2e-22 | ||
| 3g4d_A | 554 | Crystal Structure Of (+)-Delta-Cadinene Synthase Fr | 2e-21 | ||
| 2j5c_A | 569 | Rational Conversion Of Substrate And Product Specif | 1e-20 |
| >pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 | Back alignment and structure |
|
| >pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 | Back alignment and structure |
| >pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 | Back alignment and structure |
| >pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 | Back alignment and structure |
| >pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 | Back alignment and structure |
| >pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 | Back alignment and structure |
| >pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 | Back alignment and structure |
| >pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 | Back alignment and structure |
| >pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 | Back alignment and structure |
| >pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 | Back alignment and structure |
| >pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 | Back alignment and structure |
| >pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 | Back alignment and structure |
| >pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 | Back alignment and structure |
| >pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 | Back alignment and structure |
| >pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 | Back alignment and structure |
| >pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 | Back alignment and structure |
| >pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 | Back alignment and structure |
| >pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 | Back alignment and structure |
|---|
Score = 688 bits (1775), Expect = 0.0
Identities = 416/728 (57%), Positives = 523/728 (71%), Gaps = 21/728 (2%)
Query: 97 SNEIKERVHAIKSMLGSMEDGEISVSAYDTAWVALVEDIQGSGAPQFPSSLHWIANSQLP 156
SN KE V ++K++L ++ DGEI++SAYDTAWVAL++ G P FPS++ WIA +QL
Sbjct: 8 SNAFKEAVKSVKTILRNLTDGEITISAYDTAWVALIDA--GDKTPAFPSAVKWIAENQLS 65
Query: 157 DGSWGDHLLFSAHDRLINTLACVVALRSWNIHHDKCHKGLLFFKENISKLENENDEHMPI 216
DGSWGD LFS HDRLINTLACVVALRSWN+ +C+KG+ FF+ENI KLE+ENDEHMPI
Sbjct: 66 DGSWGDAYLFSYHDRLINTLACVVALRSWNLFPHQCNKGITFFRENIGKLEDENDEHMPI 125
Query: 217 GFEVAFPSLLEIARSLDIEVPYDSPVLQKIYDKRNLKLTRIPKDIMHNVPTTLLHSLEGM 276
GFEVAFPSLLEIAR ++I+VPYDSPVL+ IY K+ LKLTRIPK+IMH +PTTLLHSLEGM
Sbjct: 126 GFEVAFPSLLEIARGINIDVPYDSPVLKDIYAKKELKLTRIPKEIMHKIPTTLLHSLEGM 185
Query: 277 PDLNWQKLLKLQCQDGSFLFSPSSTAYALMQTKDENCLKYLTKAVQRFNGGVPNVYPVDI 336
DL+W+KLLKLQ QDGSFLFSPSSTA+A MQT+D NCL+YL AV+RFNGGVPNV+PVD+
Sbjct: 186 RDLDWEKLLKLQSQDGSFLFSPSSTAFAFMQTRDSNCLEYLRNAVKRFNGGVPNVFPVDL 245
Query: 337 FEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLL 396
FEH+W VDRLQRLGISRYF+ EIKECLDYV+RYWT+ GICWAR + VQD+DDT+M FRLL
Sbjct: 246 FEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLL 305
Query: 397 RLHGYDVSAEAFEHFEKGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQFSA 456
R HGY VSA+ F++FEK GEFFCFVGQS QAVTG++NLYRASQ+ FP E+IL +AK+FS
Sbjct: 306 RQHGYQVSADVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSY 365
Query: 457 KYLKAKTAA-DLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDDVWIGK 515
YL K +L+DKWII KDLPGE+ FA+E+PWYA LPR+ETR YI+QYGGE+DVWIGK
Sbjct: 366 NYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGK 425
Query: 516 TLYRMPYVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKLDKFGITRRALLLAYFV 575
TLYRMPYVNN+ YLELAK DYNNCQA H+ EWD QKWY +L ++G+ R LL Y++
Sbjct: 426 TLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRLSEWGVRRSELLECYYL 485
Query: 576 ASASIYEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCISAWDYINR 635
A+A+I+E R ER+ WAK++VLV+ I+S F + DS + E+ D+
Sbjct: 486 AAATIFESERSHERMVWAKSSVLVKAISSSFGESSDSRRSFSDQFHEYIANARRSDHHFN 545
Query: 636 RRWDSNKKGE----RFAGKTLLGTLNHIALDALVANGRDIGGNLREAWEKWLTTWQDDGN 691
R + L+GTLN ++ D +++GRD+ L +W W+ W+ G
Sbjct: 546 DRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYG- 604
Query: 692 SHWGVAELLVQTINLSAGRLLSEELLCHPEYARLSYLTNRICHTLGHYHKQKVQVNRNNN 751
G EL+V+ I L L+ H + RL+ + NRIC + ++
Sbjct: 605 -DEGEGELMVKMIILMKNNDLT-NFFTHTHFVRLAEIINRICLPRQYLKARRNDEKEK-- 660
Query: 752 IGNNRITALSVEPDMQELVQLVLQNSSSGIGSDVKQTFLTVAKSFYYCAYCDAETINSHI 811
T S+E +M ++V+L L S DV TFL VAK+FYY A C + + +HI
Sbjct: 661 ------TIKSMEKEMGKMVELALSE--SDTFRDVSITFLDVAKAFYYFALCG-DHLQTHI 711
Query: 812 GKVLFQTV 819
KVLFQ V
Sbjct: 712 SKVLFQKV 719
|
| >3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 | Back alignment and structure |
|---|
| >3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 | Back alignment and structure |
|---|
| >3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 | Back alignment and structure |
|---|
| >3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 | Back alignment and structure |
|---|
| >2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 | Back alignment and structure |
|---|
| >2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 | Back alignment and structure |
|---|
| >3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 | Back alignment and structure |
|---|
| >3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 | Back alignment and structure |
|---|
| >1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 821 | |||
| 3pya_A | 727 | ENT-copalyl diphosphate synthase, chloroplastic; c | 100.0 | |
| 3s9v_A | 785 | Abietadiene synthase, chloroplastic; alpha bundle/ | 100.0 | |
| 3sdr_A | 817 | Alpha-bisabolene synthase; lyase, terpene synthase | 100.0 | |
| 3p5p_A | 764 | Taxadiene synthase; class I and II terpene cyclase | 100.0 | |
| 3n0f_A | 555 | Isoprene synthase; terpene cyclase fold, hemiterpe | 100.0 | |
| 2ong_A | 543 | 4S-limonene synthase; monoterpene synthase, monote | 100.0 | |
| 3g4d_A | 554 | (+)-delta-cadinene synthase isozyme XC1; cyclase, | 100.0 | |
| 3m00_A | 550 | Aristolochene synthase; plant terpenoid cyclase, l | 100.0 | |
| 2j5c_A | 569 | 1,8-cineole synthase; terpene synthases, 1, monote | 100.0 | |
| 1n1b_A | 549 | (+)-bornyl diphosphate synthase; terpene synthase | 100.0 | |
| 1ps1_A | 337 | Pentalenene synthase; antibiotic biosynthesis, ses | 99.94 | |
| 1di1_A | 300 | Aristolochene synthase; sesquiterpene cyclase, iso | 99.93 | |
| 3bny_A | 320 | Aristolochene synthase; sesquiterpene cyclase, iso | 99.92 | |
| 3kb9_A | 382 | EPI-isozizaene synthase; terpenoid cyclase, alpha- | 99.86 | |
| 3v1v_A | 433 | 2-MIB synthase, 2-methylisoborneol synthase; class | 98.95 | |
| 2sqc_A | 631 | Squalene-hopene cyclase; isomerase, triterpene cyc | 97.92 | |
| 1w6k_A | 732 | Lanosterol synthase; cyclase, cholesterol, monotop | 97.84 | |
| 3dss_B | 331 | Geranylgeranyl transferase type-2 subunit beta; pr | 97.51 | |
| 2h6f_B | 437 | Protein farnesyltransferase beta subunit; ftase, f | 96.77 | |
| 1w6k_A | 732 | Lanosterol synthase; cyclase, cholesterol, monotop | 96.22 | |
| 1qqf_A | 277 | Protein (complement C3DG); alpha-alpha barrel, imm | 95.79 | |
| 1hzf_A | 367 | Complement factor C4A; alpha-alpha 6 barrel, immun | 95.54 | |
| 2wy7_A | 310 | Complement C3D fragment; immune system, immune res | 95.3 | |
| 1n4q_B | 377 | Geranyltransferase type-I beta subunit; protein ge | 94.61 | |
| 4acq_A | 1451 | Alpha-2-macroglobulin; hydrolase inhibitor, protei | 93.5 | |
| 2h6f_B | 437 | Protein farnesyltransferase beta subunit; ftase, f | 93.41 | |
| 3dss_B | 331 | Geranylgeranyl transferase type-2 subunit beta; pr | 93.25 | |
| 2sqc_A | 631 | Squalene-hopene cyclase; isomerase, triterpene cyc | 92.72 | |
| 1yyq_A | 374 | Trichodiene synthase; terpenoid cyclase fold, site | 90.06 | |
| 2hr0_B | 915 | Complement C3 alpha' chain; complement component C | 89.79 | |
| 1n4q_B | 377 | Geranyltransferase type-I beta subunit; protein ge | 84.47 | |
| 1hzf_A | 367 | Complement factor C4A; alpha-alpha 6 barrel, immun | 82.96 | |
| 1gxm_A | 332 | Pectate lyase; mechanism, elimination; 1.32A {Cell | 81.97 | |
| 3q7a_B | 520 | Farnesyltransferase beta subunit; protein prenyltr | 81.23 |
| >3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-202 Score=1764.16 Aligned_cols=700 Identities=60% Similarity=1.067 Sum_probs=660.6
Q ss_pred chhhHHHHHHHHHHHhccCCCCCcccchhhhhhhhccccCCCCCCCCChhHHHHHHhccCCCCCCCCCCCCCchhhHhhh
Q 003417 96 ASNEIKERVHAIKSMLGSMEDGEISVSAYDTAWVALVEDIQGSGAPQFPSSLHWIANSQLPDGSWGDHLLFSAHDRLINT 175 (821)
Q Consensus 96 ~~~~~~~~~~~i~~~~~~~~~g~~S~S~YDTAWVAmvp~~~g~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~d~ll~T 175 (821)
.++++++++++||+||.+|++|++|||+||||||||||++ +++||||+||+|||+||++|||||++++++.+|||+||
T Consensus 7 ~~~~~~~~~~~ir~~l~~~~~g~~S~S~YDTAWVAmvp~~--~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~T 84 (727)
T 3pya_A 7 NSNAFKEAVKSVKTILRNLTDGEITISAYDTAWVALIDAG--DKTPAFPSAVKWIAENQLSDGSWGDAYLFSYHDRLINT 84 (727)
T ss_dssp -CCHHHHHHHHHHHHHHTCCSCCCCCCHHHHHHHHTCBCS--SSSBSCHHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhccCCcccCcHHHhHHHhhccCC--CCCCCCHHHHHHHHhcCCCCCCCCCCCCcchhhHHHHH
Confidence 4678999999999999999999999999999999999998 56899999999999999999999998878999999999
Q ss_pred HHHHHHHHhhccCchhhhhHHHHHHHhHhhhhccCCCCCCceEeEehhHHHHHHHhCCCCCCCCChhhHHHHHHhhhhhc
Q 003417 176 LACVVALRSWNIHHDKCHKGLLFFKENISKLENENDEHMPIGFEVAFPSLLEIARSLDIEVPYDSPVLQKIYDKRNLKLT 255 (821)
Q Consensus 176 LA~vlAL~~w~~~~~~i~~Gl~fl~~nl~~~~~~~~~~~~vgfeii~P~Ll~~a~~lgl~~p~~~~~l~~l~~~r~~kL~ 255 (821)
||||+||++||+|+++|+||++||++|+++|++++.+++|||||||||+||++|+++||+||++.|.+..|.++|+.||+
T Consensus 85 LAcvlAL~~w~~~~~~i~rGl~fl~~nl~~~~~~~~~~~pvGfeiifP~Ll~~a~~~gl~~p~~~~~l~~i~~~r~~kL~ 164 (727)
T 3pya_A 85 LACVVALRSWNLFPHQCNKGITFFRENIGKLEDENDEHMPIGFEVAFPSLLEIARGINIDVPYDSPVLKDIYAKKELKLT 164 (727)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHGGGTTCCSSCCCCTTHHHHHHHHHHHHHHTTCCSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhccCCCCCCceeeeeHHHHHHHHHHcCcCCCCCchHHHHHHHhHHHHHh
Confidence 99999999999999999999999999999998776789999999999999999999999999999999999999999999
Q ss_pred CCCCccccccchhHHHHHhcCCCcchHHHhhcccCCCcccCCccHHHHHHhccCchhHHHHHHHHHHHhcCCCCCCCccC
Q 003417 256 RIPKDIMHNVPTTLLHSLEGMPDLNWQKLLKLQCQDGSFLFSPSSTAYALMQTKDENCLKYLTKAVQRFNGGVPNVYPVD 335 (821)
Q Consensus 256 r~~~~~~~~~p~~llhslEgl~~~d~~~v~~~~~~~GS~~~SPSaTAa~l~~~~d~~~l~YL~~~v~~~~g~VP~~yP~d 335 (821)
|++++.+|+.|++|+||||||+++||++++|+|++||||++||||||||||+++|++|++||+++|++++|+||++||+|
T Consensus 165 r~~~~~~~~~p~~llhslEgl~~~dw~~~~~~q~~~GS~~~SPsaTAa~l~~~~d~~~l~YL~~~v~k~~g~VP~~yP~d 244 (727)
T 3pya_A 165 RIPKEIMHKIPTTLLHSLEGMRDLDWEKLLKLQSQDGSFLFSPSSTAFAFMQTRDSNCLEYLRNAVKRFNGGVPNVFPVD 244 (727)
T ss_dssp HSCHHHHTTSCCGGGGGGGGCCCCCHHHHGGGCCTTSSBTTBHHHHHHHHHHHCCHHHHHHHHHHHHHTTTCCCSSCCCH
T ss_pred CCChhhccCCCchHHHHHhcccccCHHHHhcccCCCCCcccCHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhccccccccCCCCCChHHHHHHHHHHHHcCCccchhhhhccccCC
Q 003417 336 IFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFRLLRLHGYDVSAEAFEHFEKGG 415 (821)
Q Consensus 336 ~fe~Lw~VD~LqRLGIs~~F~~EI~~~Ld~i~~~~~~~gi~~~~~~~~~DlddTAlaFrlLR~~Gy~VS~dvf~~F~~~g 415 (821)
+||+||+||+||||||+|||++||+++|+++|++|.++|++++++....|+|+|||+|||||||||+||||||++|+++|
T Consensus 245 ~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~tAL~FRLLRqhGy~VS~DvF~~Fk~~G 324 (727)
T 3pya_A 245 LFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNFEKEG 324 (727)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHHHHHHHHHHHTTCCCCGGGGGGGEETT
T ss_pred HHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHHHHHHHHHHhCCCCCCHHHHHhccCCC
Confidence 99999999999999999999999999999999999888888876665689999999999999999999999999999999
Q ss_pred ceeeccCCccchHHHHHhHHhhhccCCCChhHHHHHHHHHHHHHHHHhhc-cchhhhhhcCCChhHHHHhccCccccccc
Q 003417 416 EFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQFSAKYLKAKTAA-DLLDKWIIAKDLPGEVAFAMEVPWYACLP 494 (821)
Q Consensus 416 ~F~~~~~e~~~dvs~~l~Ly~AS~l~~~gE~iL~eA~~fs~~~L~~~~~~-~~~Dkw~~s~~l~~eV~~aL~~P~~~~l~ 494 (821)
+|+|+.+++.+|++||||||||||+++|||.||++|+.||++||++.+.. .+.|||+++++|++||+|||++|||+++|
T Consensus 325 ~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~dkw~~~~~L~~~V~~aL~~P~~~~l~ 404 (727)
T 3pya_A 325 EFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLP 404 (727)
T ss_dssp EECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHTTCCCCSSEECSCHHHHHHHHHHSCGGGCCH
T ss_pred cccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCCcccccccCCcHHHHHHHHhcCcHhcCCh
Confidence 99999999999999999999999999999999999999999999987765 78899999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCcchhhhhhccCCCCCCHHHHHHHHhhhhhhhhchhhhHHHHHHHHHhcCCCcCCcchhhHHHHHH
Q 003417 495 RLETRLYIEQYGGEDDVWIGKTLYRMPYVNNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKLDKFGITRRALLLAYF 574 (821)
Q Consensus 495 RleaR~yIe~Y~~~~~~wi~Kt~Yrm~~v~n~~lLeLAklDFn~~Qs~hq~El~~l~rWw~e~~l~~l~faR~r~ve~Yf 574 (821)
|||||+||++|++++++|||||+||||+++|++||||||+|||+||++||+||++|+||||++||++|||+|||+|||||
T Consensus 405 RleaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~l~faRdr~ve~Yf 484 (727)
T 3pya_A 405 RVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRLSEWGVRRSELLECYY 484 (727)
T ss_dssp HHHHHHHHHHCCGGGCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcchhhhhhhccccccccHHHHHHHHHhHHHHHHHhHHHHhhhheeHHhcCcccCCchhhHHHHHHH
Confidence 99999999999988899999999999999999999999999999999999999999999999999889999999999999
Q ss_pred HHhhcccCCcchhHHHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHHHHhhhh-------hhhhhhccc---CCCchhh
Q 003417 575 VASASIYEPARWQERIAWAKTAVLVETITSYFDKQKDSCKQRRAFVREFRNCIS-------AWDYINRRR---WDSNKKG 644 (821)
Q Consensus 575 ~aaa~~fEPe~s~~Ri~~aK~~~L~tviDD~fD~ygts~eEl~~f~~~f~~~~~-------~wD~~~~~~---lp~~~~~ 644 (821)
|++|++||||||.+|++|||+++|+|||||+||+|| |||++||++|++|+. +|+. .+. .|+|++|
T Consensus 485 w~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG---eEl~~ft~av~rwd~~~~~~~~~~~~--~~~~~~~p~~~~m 559 (727)
T 3pya_A 485 LAAATIFESERSHERMVWAKSSVLVKAISSSFGESS---DSRRSFSDQFHEYIANARRSDHHFND--RNMRLDRPGSVQA 559 (727)
T ss_dssp HHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH---HHHHHHHHHHHHHC---------------------CHHHHH
T ss_pred HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHhcccccccccccccc--hhhcccCCCcHHH
Confidence 999999999999999999999999999999999999 999999998876663 2322 111 2888889
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHhhCCCcccchHHHHHHHHHhccCcccchhhcCChhHHH
Q 003417 645 ERFAGKTLLGTLNHIALDALVANGRDIGGNLREAWEKWLTTWQDDGNSHWGVAELLVQTINLSAGRLLSEELLCHPEYAR 724 (821)
Q Consensus 645 k~~f~~aL~~t~nei~~~~~~~~g~~i~~~L~~~W~~l~~~W~~eg~~~~~~~~llv~~~~l~~G~~l~eel~~~p~~~~ 724 (821)
|+|| .|||||+|||+.++++.||+|+++||+++|++|+++|..|+. .+.+++++++|++++|+.++| ++++|+|.+
T Consensus 560 k~~f-~aL~~t~nei~~~~~k~qg~~v~~~l~~~W~~~l~s~~~Ea~--~~EAellv~~I~l~sG~~l~e-~l~~~ey~~ 635 (727)
T 3pya_A 560 SRLA-GVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYGD--EGEGELMVKMIILMKNNDLTN-FFTHTHFVR 635 (727)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHSSSCGGG-GGSSHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcc--ccceeeeeeeeecCCCcchHh-hccChhHHH
Confidence 9999 999999999999999999999999999999999999999988 577899999999999999999 999999999
Q ss_pred HHHHHHHHh---hhhhhhHHHHhhccccccccchhhhhhcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhcc
Q 003417 725 LSYLTNRIC---HTLGHYHKQKVQVNRNNNIGNNRITALSVEPDMQELVQLVLQNSSSGIGSDVKQTFLTVAKSFYYCAY 801 (821)
Q Consensus 725 l~~li~Rl~---~DL~t~~~Ek~~G~~~YmkE~~~~i~~~iE~~~rEL~qlvl~~~~~~vp~~~Kq~flnvaR~fyY~a~ 801 (821)
|+++++++| |||++|++|+.+ +++++||++||||+|+|+++++++||++| +|++|+|+|||.+|
T Consensus 636 L~~ltn~icrllndl~~~~~E~~~-----------~~~~~IE~~mqEL~~lVl~~~~~~ip~~~--tf~~V~ksFYy~ay 702 (727)
T 3pya_A 636 LAEIINRICLPRQYLKARRNDEKE-----------KTIKSMEKEMGKMVELALSESDTFRDVSI--TFLDVAKAFYYFAL 702 (727)
T ss_dssp HHHHHHHHSCCCC------CHHHH-----------HHHHHHHHHHHHHHHHHHSCCTTTHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhccCCCCCCCcc--cHHHHHHHHHhhhc
Confidence 999999999 999999998843 67889999999999999998767999999 99999999999999
Q ss_pred CChHHHHHHHhhccccccC
Q 003417 802 CDAETINSHIGKVLFQTVD 820 (821)
Q Consensus 802 ~~~~~ik~hI~kVLfEPI~ 820 (821)
|+|+ |+.||+|||||||-
T Consensus 703 ~~p~-i~~hI~kVl~~~~~ 720 (727)
T 3pya_A 703 CGDH-LQTHISKVLFQKVG 720 (727)
T ss_dssp HTTS-CHHHHHHHHHSCCC
T ss_pred CCHH-HHHHHHHHHcCccc
Confidence 9998 99999999999984
|
| >3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} | Back alignment and structure |
|---|
| >3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* | Back alignment and structure |
|---|
| >3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* | Back alignment and structure |
|---|
| >3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* | Back alignment and structure |
|---|
| >2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* | Back alignment and structure |
|---|
| >3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* | Back alignment and structure |
|---|
| >3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* | Back alignment and structure |
|---|
| >2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} | Back alignment and structure |
|---|
| >1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* | Back alignment and structure |
|---|
| >1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A | Back alignment and structure |
|---|
| >1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A | Back alignment and structure |
|---|
| >3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* | Back alignment and structure |
|---|
| >3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* | Back alignment and structure |
|---|
| >3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* | Back alignment and structure |
|---|
| >2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* | Back alignment and structure |
|---|
| >1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* | Back alignment and structure |
|---|
| >3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* | Back alignment and structure |
|---|
| >2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... | Back alignment and structure |
|---|
| >1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* | Back alignment and structure |
|---|
| >1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A | Back alignment and structure |
|---|
| >1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 | Back alignment and structure |
|---|
| >2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A | Back alignment and structure |
|---|
| >1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* | Back alignment and structure |
|---|
| >4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... | Back alignment and structure |
|---|
| >3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* | Back alignment and structure |
|---|
| >2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* | Back alignment and structure |
|---|
| >1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A | Back alignment and structure |
|---|
| >2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... | Back alignment and structure |
|---|
| >1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* | Back alignment and structure |
|---|
| >1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 | Back alignment and structure |
|---|
| >1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* | Back alignment and structure |
|---|
| >3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 821 | ||||
| d1n1ba1 | 207 | a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha | 4e-56 | |
| d5easa1 | 197 | a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase | 2e-51 | |
| d1n1ba2 | 328 | a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth | 1e-37 | |
| d5easa2 | 328 | a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase | 2e-37 |
| >d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Terpenoid cyclases/Protein prenyltransferases family: Terpenoid cyclase N-terminal domain domain: (+)-bornyl diphosphate synthase species: Garden sage (Salvia officinalis) [TaxId: 38868]
Score = 189 bits (482), Expect = 4e-56
Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 7/176 (3%)
Query: 335 DIFEHLWAVDRLQRLGISRYFQPEIKECLDYVYRYWTEEGICWARNTRVQDLDDTSMGFR 394
+ + L + L+ LG+S +FQ EIKE L +Y DL T++GFR
Sbjct: 39 EPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHK---CFHNNEVEKMDLYFTALGFR 95
Query: 395 LLRLHGYDVSAEAFEHFEKGGEFFCFVGQSTQAVTGVYNLYRASQVLFPGEKILGHAKQF 454
LLR HG+++S + F F K + F Q G+ LY AS +L GE L A++F
Sbjct: 96 LLRQHGFNISQDVFNCF-KNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREF 154
Query: 455 SAKYLKAKTAADLLDKWIIAKDLPGEVAFAMEVPWYACLPRLETRLYIEQYGGEDD 510
+ K L+ K + I ++L + ++++P + + +E R +I+ Y D
Sbjct: 155 ATKCLQKKLDEGGNE---IDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPD 207
|
| >d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 | Back information, alignment and structure |
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| >d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 | Back information, alignment and structure |
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| >d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 | Back information, alignment and structure |
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Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 821 | |||
| d1n1ba2 | 328 | (+)-bornyl diphosphate synthase {Garden sage (Salv | 100.0 | |
| d5easa2 | 328 | 5-Epi-aristolochene synthase {Tobacco (Nicotiana t | 100.0 | |
| d1n1ba1 | 207 | (+)-bornyl diphosphate synthase {Garden sage (Salv | 100.0 | |
| d5easa1 | 197 | 5-Epi-aristolochene synthase {Tobacco (Nicotiana t | 100.0 | |
| d1ps1a_ | 311 | Pentalenene synthase {Streptomyces sp., UC5319 [Ta | 99.45 | |
| d1di1a_ | 300 | Aristolochene synthase {Fungus (Penicillium roquef | 98.61 | |
| d2sqca1 | 352 | Squalene-hopene cyclase {Alicyclobacillus acidocal | 97.75 | |
| d2sqca1 | 352 | Squalene-hopene cyclase {Alicyclobacillus acidocal | 96.57 | |
| d2sqca2 | 271 | Squalene-hopene cyclase {Alicyclobacillus acidocal | 96.42 | |
| d1w6ka2 | 279 | Lanosterol synthase {Human (Homo sapiens) [TaxId: | 96.4 | |
| d1w6ka1 | 448 | Lanosterol synthase {Human (Homo sapiens) [TaxId: | 96.36 | |
| d3dssb1 | 325 | Rab geranylgeranyltransferase, beta subunit {Rat ( | 95.93 | |
| d2sqca2 | 271 | Squalene-hopene cyclase {Alicyclobacillus acidocal | 95.59 | |
| d1w6ka1 | 448 | Lanosterol synthase {Human (Homo sapiens) [TaxId: | 93.28 | |
| d1r76a_ | 408 | Polygalacturonic acid lyase (pectate lyase) {Azosp | 83.54 | |
| d1gxma_ | 324 | Polygalacturonic acid lyase (pectate lyase) {Cellv | 82.37 |
| >d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} | Back information, alignment and structure |
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class: All alpha proteins fold: Terpenoid synthases superfamily: Terpenoid synthases family: Terpenoid cyclase C-terminal domain domain: (+)-bornyl diphosphate synthase species: Garden sage (Salvia officinalis) [TaxId: 38868]
Probab=100.00 E-value=4.7e-73 Score=616.52 Aligned_cols=286 Identities=16% Similarity=0.182 Sum_probs=246.6
Q ss_pred CCHHHHHHHHhhhhhhhhchhhhHHHHHHHHHhcCC-CcCCcchhhHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHhh
Q 003417 524 NNDVYLELAKLDYNNCQAVHRTEWDSLQKWYAACKL-DKFGITRRALLLAYFVASASIYEPARWQERIAWAKTAVLVETI 602 (821)
Q Consensus 524 ~n~~lLeLAklDFn~~Qs~hq~El~~l~rWw~e~~l-~~l~faR~r~ve~Yf~aaa~~fEPe~s~~Ri~~aK~~~L~tvi 602 (821)
.|++||||||+|||+||++||+||++|+|||+++|| ++|||+|||++||||||+|++||||||.+|++|||+++|+++|
T Consensus 1 ~N~~lLelAKlDFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~l~~ii 80 (328)
T d1n1ba2 1 MNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVI 80 (328)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhCCcccCCchHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhh
Confidence 399999999999999999999999999999999999 5799999999999999999999999999999999999999999
Q ss_pred hhhhccCCCcHHHHHHHHHHHHhhhhhhhhhhcccCCCchhhHhHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 003417 603 TSYFDKQKDSCKQRRAFVREFRNCISAWDYINRRRWDSNKKGERFAGKTLLGTLNHIALDALVANGRDIGGNLREAWEKW 682 (821)
Q Consensus 603 DD~fD~ygts~eEl~~f~~~f~~~~~~wD~~~~~~lp~~~~~k~~f~~aL~~t~nei~~~~~~~~g~~i~~~L~~~W~~l 682 (821)
||+||+||| +|||++||+ +++|||..+++.||+| ||+|| .+|++|+||++.++++.||+++++|++++|++|
T Consensus 81 DD~yD~ygt-~eEl~~ft~----ai~rWd~~~~~~lp~y--mk~~~-~~l~~~~~e~~~~~~~~~g~~~~~~lk~~w~~l 152 (328)
T d1n1ba2 81 DDIYDVYGT-LDELELFTD----TFKRWDTESITRLPYY--MQLCY-WGVHNYISDAAYDILKEHGFFCLQYLRKSVVDL 152 (328)
T ss_dssp HHHHHTTSC-HHHHHHHHH----HHHHTCSSGGGGSCHH--HHHHH-HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred hHHhcccCC-HHHHHHHHH----HHHhcCCcccccCcch--HHHHH-HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 999999998 999999887 5568888889999999 99999 999999999999999999999999999999999
Q ss_pred HH------HHhhCCCccc------------chHHHHHHHHHhccCcccc-h----hhcCChhHHHHHHHHHHHhhhhhhh
Q 003417 683 LT------TWQDDGNSHW------------GVAELLVQTINLSAGRLLS-E----ELLCHPEYARLSYLTNRICHTLGHY 739 (821)
Q Consensus 683 ~~------~W~~eg~~~~------------~~~~llv~~~~l~~G~~l~-e----el~~~p~~~~l~~li~Rl~~DL~t~ 739 (821)
++ +|.++||+|+ |.+.+++++++++ |...+ + ++.++|++++++++|+||||||++|
T Consensus 153 ~~ayl~EakW~~~g~vPt~eEYl~~~~vS~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~i~RL~nDi~~~ 231 (328)
T d1n1ba2 153 VEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTF-ANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTS 231 (328)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTS-TTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHhhceehhhHHHHHHHHHHhC-CCccchHHHHHHHhccHHHHHHHHHHHHHHhhhhhH
Confidence 97 7999999987 3333555555444 54433 3 3778999999999999999999999
Q ss_pred HHHHhhcccc-----ccccch-------hhhhhcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh--h---ccC
Q 003417 740 HKQKVQVNRN-----NNIGNN-------RITALSVEPDMQELVQLVLQNSSSGIGSDVKQTFLTVAKSFYY--C---AYC 802 (821)
Q Consensus 740 ~~Ek~~G~~~-----YmkE~~-------~~i~~~iE~~~rEL~qlvl~~~~~~vp~~~Kq~flnvaR~fyY--~---a~~ 802 (821)
++|+++|+++ ||+|++ ++++++||..||+|++++++. +++|++|+++|||+||++++ + +||
T Consensus 232 ~~E~~rg~~~s~v~cymke~~~s~eeA~~~i~~~ie~~wk~ln~e~l~~--~~vp~~~~~~~ln~aR~~~~~Y~~~Dgyt 309 (328)
T d1n1ba2 232 YFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAG--YPFPDGMVAGAANIGRVAQFIYLHGDGFG 309 (328)
T ss_dssp -------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHTC--CSSCHHHHHHHHHHHHHHHHHTTTSCCC-
T ss_pred HHHHhcCCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9999999997 999885 378899999999999999973 57999999999999999753 3 788
Q ss_pred ChH-HHHHHHhhccccccC
Q 003417 803 DAE-TINSHIGKVLFQTVD 820 (821)
Q Consensus 803 ~~~-~ik~hI~kVLfEPI~ 820 (821)
.|+ .|++||++||||||.
T Consensus 310 ~~~~~~k~~I~~ll~ePvs 328 (328)
T d1n1ba2 310 VQHSKTYEHIAGLLFEPYA 328 (328)
T ss_dssp ---CHHHHHHHHHHTSCCC
T ss_pred CCcHHHHHHHHHHhccCCC
Confidence 775 599999999999984
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| >d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
| >d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} | Back information, alignment and structure |
|---|
| >d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
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| >d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} | Back information, alignment and structure |
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| >d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} | Back information, alignment and structure |
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| >d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
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| >d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
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| >d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
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| >d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
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| >d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} | Back information, alignment and structure |
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| >d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} | Back information, alignment and structure |
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