Citrus Sinensis ID: 003437
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 820 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M3D6 | 725 | ABC transporter G family | yes | no | 0.435 | 0.492 | 0.469 | 2e-86 | |
| Q9M2V7 | 736 | ABC transporter G family | no | no | 0.379 | 0.422 | 0.517 | 3e-86 | |
| O80946 | 740 | ABC transporter G family | no | no | 0.397 | 0.440 | 0.497 | 9e-86 | |
| Q9ZUT0 | 755 | ABC transporter G family | no | no | 0.396 | 0.430 | 0.502 | 2e-85 | |
| Q9M2V5 | 708 | ABC transporter G family | no | no | 0.386 | 0.447 | 0.522 | 5e-85 | |
| Q9M2V6 | 662 | ABC transporter G family | no | no | 0.345 | 0.427 | 0.545 | 2e-82 | |
| Q9LFG8 | 739 | ABC transporter G family | no | no | 0.389 | 0.431 | 0.498 | 1e-80 | |
| Q9FNB5 | 727 | ABC transporter G family | no | no | 0.384 | 0.433 | 0.504 | 6e-80 | |
| Q93YS4 | 751 | ABC transporter G family | no | no | 0.314 | 0.343 | 0.456 | 3e-56 | |
| Q9FT51 | 737 | ABC transporter G family | no | no | 0.315 | 0.351 | 0.424 | 5e-54 |
| >sp|Q9M3D6|AB19G_ARATH ABC transporter G family member 19 OS=Arabidopsis thaliana GN=ABCG19 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 321 bits (822), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 179/381 (46%), Positives = 253/381 (66%), Gaps = 24/381 (6%)
Query: 11 KTLESLLDMDKSLAAKNNNNKDAVVAAAGLKMIP-GHGLEFKNLSYSIMKKQK-----KD 64
K +S D K+++ ++ L + P + L F NL Y + +++ ++
Sbjct: 35 KDCDSFRKGDSGDGVKSDDPAHHIIDVEALYVKPVPYVLNFNNLQYDVTLRRRFGFSRQN 94
Query: 65 GVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124
GV LL D+SG+A G+I+A++G SGAGKST +DALAGR+A+GSL GSV ++G+
Sbjct: 95 GV-----KTLLDDVSGEASDGDILAVLGASGAGKSTLIDALAGRVAEGSLRGSVTLNGEK 149
Query: 125 VTTS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL 183
V S +K++S+YVMQDD LFPMLTV ET MFA+E RLP S+S+ +K +RV L+DQLGL
Sbjct: 150 VLQSRLLKVISAYVMQDDLLFPMLTVKETLMFASEFRLPRSLSKSKKMERVEALIDQLGL 209
Query: 184 RSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKD 243
R+A +T IG+EG RGVSGGERRRVSIGIDIIH P +LFLDEPTSGLDST+A+ VV+ +K
Sbjct: 210 RNAANTVIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTNAFMVVQVLKR 269
Query: 244 IARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDGENS 303
IA++GSIV+M+IHQPS RI LLDR+I+L+RG+ V+ GSP +LP + FGR +P+ EN
Sbjct: 270 IAQSGSIVIMSIHQPSARIVELLDRLIILSRGKSVFNGSPASLPGFFSDFGRPIPEKENI 329
Query: 304 LEYLLDVIKEYDESTVGLGPLV----LYQRDGIKPDQAARTPFPKIPRTPASRSKHAISL 359
E+ LD+++E + S G LV +Q++ I Q+A P+T ++SL
Sbjct: 330 SEFALDLVRELEGSNEGTKALVDFNEKWQQNKISLIQSA-------PQTNKLDQDRSLSL 382
Query: 360 RSQA-FSFSTGNMTPGANSTQ 379
+ S S G + G++ +
Sbjct: 383 KEAINASVSRGKLVSGSSRSN 403
|
Confers selective resistance to kanamycin. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M2V7|AB16G_ARATH ABC transporter G family member 16 OS=Arabidopsis thaliana GN=ABCG16 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 320 bits (820), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 166/321 (51%), Positives = 224/321 (69%), Gaps = 10/321 (3%)
Query: 48 LEFKNLSYSIMKKQKKD--------GVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKS 99
L F NL+Y++ ++K D +K LL +ISG+ GEI+A++G SG+GKS
Sbjct: 73 LSFNNLTYNVSVRRKLDFHDLVPWRRTSFSKTKTLLDNISGETRDGEILAVLGASGSGKS 132
Query: 100 TFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEV 159
T +DALA RIA+GSL+G+V ++G+ + + +K++S+YVMQDD LFPMLTV ET MFAAE
Sbjct: 133 TLIDALANRIAKGSLKGTVTLNGEALQSRMLKVISAYVMQDDLLFPMLTVEETLMFAAEF 192
Query: 160 RLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSL 219
RLP S+ + +KK RV L+DQLG+R+A T IG+EG RG+SGGERRRVSIGIDIIH P +
Sbjct: 193 RLPRSLPKSKKKLRVQALIDQLGIRNAAKTIIGDEGHRGISGGERRRVSIGIDIIHDPIV 252
Query: 220 LFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279
LFLDEPTSGLDSTSA+ VV+ +K IA +GSI++M+IHQPS+R+ LLDR+I L+RG V+
Sbjct: 253 LFLDEPTSGLDSTSAFMVVKVLKRIAESGSIIIMSIHQPSHRVLSLLDRLIFLSRGHTVF 312
Query: 280 MGSPVALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQR--DGIKPDQA 337
GSP +LP+ AGFG +P+ EN E+ LD+I+E + S G LV + + +K
Sbjct: 313 SGSPASLPSFFAGFGNPIPENENQTEFALDLIRELEGSAGGTRGLVEFNKKWQEMKKQSN 372
Query: 338 ARTPFPKIPRTPASRSKHAIS 358
+T P P K AIS
Sbjct: 373 PQTLTPPASPNPNLTLKEAIS 393
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O80946|AB1G_ARATH ABC transporter G family member 1 OS=Arabidopsis thaliana GN=ABCG1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 318 bits (816), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 173/348 (49%), Positives = 232/348 (66%), Gaps = 22/348 (6%)
Query: 48 LEFKNLSYSIMKKQKKD----------------GVWITKEAYLLHDISGQAIRGEIMAIM 91
L F NL+Y++ + K D K LL++ISG+ GEIMA++
Sbjct: 67 LSFDNLTYNVSVRPKLDFRNLFPRRRTEDPEIAQTARPKTKTLLNNISGETRDGEIMAVL 126
Query: 92 GPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151
G SG+GKST +DALA RIA+GSL+G+V+++G+ + + +K++S+YVMQDD LFPMLTV E
Sbjct: 127 GASGSGKSTLIDALANRIAKGSLKGTVKLNGETLQSRMLKVISAYVMQDDLLFPMLTVEE 186
Query: 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGI 211
T MFAAE RLP S+ + +KK RV L+DQLG+R+A T IG+EG RG+SGGERRRVSIGI
Sbjct: 187 TLMFAAEFRLPRSLPKSKKKLRVQALIDQLGIRNAAKTIIGDEGHRGISGGERRRVSIGI 246
Query: 212 DIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIV 271
DIIH P LLFLDEPTSGLDSTSA+ VV+ +K IA++GSIV+M+IHQPS+R+ LLDR+I
Sbjct: 247 DIIHDPILLFLDEPTSGLDSTSAFMVVKVLKRIAQSGSIVIMSIHQPSHRVLGLLDRLIF 306
Query: 272 LARGRLVYMGSPVALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDG 331
L+RG VY GSP +LP FG +P+ EN E+ LD+I+E + S G L+ + +
Sbjct: 307 LSRGHTVYSGSPASLPRFFTEFGSPIPENENRTEFALDLIRELEGSAGGTRGLIEFNKKW 366
Query: 332 IK-PDQAARTPFPKIPRTPASRSKHAISLRSQ-AFSFSTGNMTPGANS 377
+ Q+ R P P TP S ++L+ A S S G + G S
Sbjct: 367 QEMKKQSNRQP----PLTPPSSPYPNLTLKEAIAASISRGKLVSGGES 410
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUT0|AB2G_ARATH ABC transporter G family member 2 OS=Arabidopsis thaliana GN=ABCG2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 317 bits (812), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 172/342 (50%), Positives = 232/342 (67%), Gaps = 17/342 (4%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEA---------YLLHDISGQAIRGEIMAIMGPSGAGK 98
L F +L+YS+ ++K + + + + LL+ ISG+A GE+MA++G SG+GK
Sbjct: 98 LSFTDLTYSVKIQKKFNPLACCRRSGNDSSVNTKILLNGISGEAREGEMMAVLGASGSGK 157
Query: 99 STFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAE 158
ST +DALA RIA+ SL GS+ ++G+ + +S K++S+YVMQDD LFPMLTV ET MF+AE
Sbjct: 158 STLIDALANRIAKDSLRGSITLNGEVLESSMQKVISAYVMQDDLLFPMLTVEETLMFSAE 217
Query: 159 VRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPS 218
RLP S+S+ +KK RV L+DQLGLRSA T IG+EG RGVSGGERRRVSIG DIIH P
Sbjct: 218 FRLPRSLSKKKKKARVQALIDQLGLRSAAKTVIGDEGHRGVSGGERRRVSIGNDIIHDPI 277
Query: 219 LLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
+LFLDEPTSGLDSTSAY V++ ++ IA++GSIV+M+IHQPSYRI LLD++I L++G V
Sbjct: 278 ILFLDEPTSGLDSTSAYMVIKVLQRIAQSGSIVIMSIHQPSYRIMGLLDQLIFLSKGNTV 337
Query: 279 YMGSPVALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAA 338
Y GSP LP + F +P+ EN E+ LD+I+E + ST G PLV + + + QA
Sbjct: 338 YSGSPTHLPQFFSEFKHPIPENENKTEFALDLIRELEYSTEGTKPLVEFHKQW-RAKQAP 396
Query: 339 RTPFPKIPRTPASRSKHAIS-------LRSQAFSFSTGNMTP 373
T S K AI+ L S A + ++ N+TP
Sbjct: 397 SYNNNNKRNTNVSSLKEAITASISRGKLVSGATNNNSSNLTP 438
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M2V5|AB18G_ARATH ABC transporter G family member 18 OS=Arabidopsis thaliana GN=ABCG18 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 316 bits (809), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 174/333 (52%), Positives = 238/333 (71%), Gaps = 16/333 (4%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAY--LLHDISGQAIRGEIMAIMGPSGAGKSTFLDAL 105
L F NLSY+++ +++ D + LL DI+G+A GEI+A++G SGAGKST +DAL
Sbjct: 63 LSFNNLSYNVVLRRRFDFSRRKTASVKTLLDDITGEARDGEILAVLGGSGAGKSTLIDAL 122
Query: 106 AGRIAQGSLEGSVRIDGKPVTTS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS 164
AGR+A+ SL+G+V ++G+ V S +K++S+YVMQDD LFPMLTV ET MFA+E RLP S
Sbjct: 123 AGRVAEDSLKGTVTLNGEKVLQSRLLKVISAYVMQDDLLFPMLTVKETLMFASEFRLPRS 182
Query: 165 ISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224
+ + +K +RV L+DQLGLR+A T IG+EG RGVSGGERRRVSIGIDIIH P LLFLDE
Sbjct: 183 LPKSKKMERVETLIDQLGLRNAADTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDE 242
Query: 225 PTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284
PTSGLDST+A+ VV+ +K IA++GS+V+M+IHQPS RI LLDR+I+L+ G+ V+ GSPV
Sbjct: 243 PTSGLDSTNAFMVVQVLKRIAQSGSVVIMSIHQPSARIIGLLDRLIILSHGKSVFNGSPV 302
Query: 285 ALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPK 344
+LP+ + FGR +P+ EN E+ LDVI+E + S+ G LV + + + +Q AR
Sbjct: 303 SLPSFFSSFGRPIPEKENITEFALDVIRELEGSSEGTRDLVEFN-EKWQQNQTARA---- 357
Query: 345 IPRTPASRSKHAISLRSQ-AFSFSTGNMTPGAN 376
T SR +SL+ A S S G + G++
Sbjct: 358 ---TTQSR----VSLKEAIAASVSRGKLVSGSS 383
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M2V6|AB17G_ARATH ABC transporter G family member 17 OS=Arabidopsis thaliana GN=ABCG17 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 307 bits (787), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 156/286 (54%), Positives = 213/286 (74%), Gaps = 3/286 (1%)
Query: 48 LEFKNLSYSIMKKQK---KDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDA 104
L F +L+Y++ +Q+ + G K LL+ I+G+A GEI+AI+G SGAGKST +DA
Sbjct: 22 LAFNDLTYNVTLQQRFGLRFGHSPAKIKTLLNGITGEAKEGEILAILGASGAGKSTLIDA 81
Query: 105 LAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS 164
LAG+IA+GSL+G+V ++G+ + + ++++S+YVMQ+D LFPMLTV ET MFAAE RLP S
Sbjct: 82 LAGQIAEGSLKGTVTLNGEALQSRLLRVISAYVMQEDLLFPMLTVEETLMFAAEFRLPRS 141
Query: 165 ISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224
+S+ +K+ RV L+DQLGL + +T IG+EG RGVSGGERRRVSIG DIIH P +LFLDE
Sbjct: 142 LSKSKKRNRVETLIDQLGLTTVKNTVIGDEGHRGVSGGERRRVSIGTDIIHDPIVLFLDE 201
Query: 225 PTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284
PTSGLDSTSA+ VV+ +K IAR+GSIV+M+IHQPS RI LDR+IVL+ G++V+ SP
Sbjct: 202 PTSGLDSTSAFMVVQVLKKIARSGSIVIMSIHQPSGRIMEFLDRVIVLSSGQIVFSDSPA 261
Query: 285 ALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRD 330
LP + FG +P+ EN E+ LD+IK+ + S G LV + R+
Sbjct: 262 TLPLFFSEFGSPIPEKENIAEFTLDLIKDLEGSPEGTRGLVEFNRN 307
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFG8|AB20G_ARATH ABC transporter G family member 20 OS=Arabidopsis thaliana GN=ABCG20 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (772), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 171/343 (49%), Positives = 229/343 (66%), Gaps = 24/343 (6%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEA------------YLLHDISGQAIRGEIMAIMGPSG 95
L FK+L+YS+ K+K + LL+ ISG+A GE+MA++G SG
Sbjct: 88 LSFKDLTYSVKIKKKFKPFPCCGNSPFDGNDMEMNTKVLLNGISGEAREGEMMAVLGASG 147
Query: 96 AGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMF 155
+GKST +DALA RI++ SL G + ++G+ + +S K++S+YVMQDD LFPMLTV ET MF
Sbjct: 148 SGKSTLIDALANRISKESLRGDITLNGEVLESSLHKVISAYVMQDDLLFPMLTVEETLMF 207
Query: 156 AAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIH 215
+AE RLP S+S+ +KK RV L+DQLGLR+A T IG+EG RGVSGGERRRVSIG DIIH
Sbjct: 208 SAEFRLPSSLSKKKKKARVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGTDIIH 267
Query: 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275
P +LFLDEPTSGLDSTSAY VV+ ++ IA++GSIV+M+IHQPSYRI LLD++I L+RG
Sbjct: 268 DPIILFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDKLIFLSRG 327
Query: 276 RLVYMGSPVALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPD 335
VY GSP LP + FG +P+ EN E+ LD+I+E ++S G LV + K
Sbjct: 328 NTVYSGSPTHLPQFFSEFGHPIPENENKPEFALDLIRELEDSPEGTKSLVEFH----KQW 383
Query: 336 QAARTPFPKIPRTPASRSKHAISLRSQ-AFSFSTGNMTPGANS 377
+A +T + SR +SL+ + S S G + GA +
Sbjct: 384 RAKQT-------SSQSRRNTNVSLKDAISASISRGKLVSGATN 419
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNB5|AB6G_ARATH ABC transporter G family member 6 OS=Arabidopsis thaliana GN=ABCG6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 299 bits (765), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 173/343 (50%), Positives = 234/343 (68%), Gaps = 28/343 (8%)
Query: 48 LEFKNLSYSIMKKQK--------------KDGVWITKEAYLLHDISGQAIRGEIMAIMGP 93
L F +L+YS+ ++K +G++ +K LL+ I+G+A GEI+A++G
Sbjct: 68 LSFTDLTYSVKVRRKFTWRRSVSSDPGAPSEGIFSSKTKTLLNGITGEARDGEILAVLGA 127
Query: 94 SGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETF 153
SG+GKST +DALA RIA+GSL+G+V ++G+ + + K +S+YVMQDD LFPMLTV ET
Sbjct: 128 SGSGKSTLIDALANRIAKGSLKGNVTLNGEVLNSKMQKAISAYVMQDDLLFPMLTVEETL 187
Query: 154 MFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDI 213
MFAAE RLP S+S+ +K RV L+DQLGLR+A +T IG+EG RG+SGGERRRVSIGIDI
Sbjct: 188 MFAAEFRLPRSLSKSKKSLRVQALIDQLGLRNAANTVIGDEGHRGISGGERRRVSIGIDI 247
Query: 214 IHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273
IH P LLFLDEPTSGLDSTSA SV++ +K IA++GS+V+MT+HQPSYR+ LLDR++ L+
Sbjct: 248 IHDPILLFLDEPTSGLDSTSALSVIKVLKRIAQSGSMVIMTLHQPSYRLLRLLDRLLFLS 307
Query: 274 RGRLVYMGSPVALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIK 333
RG+ V+ GSP LP A FG +P+ EN E+ LD+I+E + S G LV + + G +
Sbjct: 308 RGQTVFSGSPAMLPRFFAEFGHPIPEHENRTEFALDLIRELEGSAGGTRSLVEFNK-GFR 366
Query: 334 PDQAARTPFPKIPRTPASRS-KHAISLRSQAFSFSTGNMTPGA 375
+A PR+ S K AIS S S G + GA
Sbjct: 367 QRKAE-------PRSQTGLSLKEAISA-----SISKGKLVSGA 397
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93YS4|AB22G_ARATH ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (561), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 120/263 (45%), Positives = 167/263 (63%), Gaps = 5/263 (1%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
L+F++++Y ++ K+ V E +L ISG GE++A+MGPSG+GK+T L LAG
Sbjct: 157 LKFRDVTYKVVIKKLTSSV----EKEILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAG 212
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISR 167
RI+Q S GSV + KP + Y+K +V QDD LFP LTV ET +AA +RLP +++R
Sbjct: 213 RISQSSTGGSVTYNDKPYS-KYLKSKIGFVTQDDVLFPHLTVKETLTYAARLRLPKTLTR 271
Query: 168 DEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTS 227
++KK+R +++ +LGL T IG RGVSGGER+RVSIG +II PSLL LDEPTS
Sbjct: 272 EQKKQRALDVIQELGLERCQDTMIGGAFVRGVSGGERKRVSIGNEIIINPSLLLLDEPTS 331
Query: 228 GLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALP 287
GLDST+A + + DIA G V+ TIHQPS R+ D++I+L RG L+Y G
Sbjct: 332 GLDSTTALRTILMLHDIAEAGKTVITTIHQPSSRLFHRFDKLILLGRGSLLYFGKSSEAL 391
Query: 288 AHLAGFGRTVPDGENSLEYLLDV 310
+ + G + N E+LLD+
Sbjct: 392 DYFSSIGCSPLIAMNPAEFLLDL 414
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FT51|AB27G_ARATH ABC transporter G family member 27 OS=Arabidopsis thaliana GN=ABCG27 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (542), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 112/264 (42%), Positives = 167/264 (63%), Gaps = 5/264 (1%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
L+F +++Y + K G+ + E +L+ ISG A GE++A+MGPSG+GK+T L+AL G
Sbjct: 145 LKFIDITYKVTTK----GMTSSSEKSILNGISGSAYPGELLALMGPSGSGKTTLLNALGG 200
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISR 167
R Q ++ GSV + KP + ++K +V QDD LFP LTV ET + A +RLP +++
Sbjct: 201 RFNQQNIGGSVSYNDKPYS-KHLKTRIGFVTQDDVLFPHLTVKETLTYTALLRLPKTLTE 259
Query: 168 DEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTS 227
EK++R ++ +LGL T IG RGVSGGER+RV IG +I+ PSLL LDEPTS
Sbjct: 260 QEKEQRAASVIQELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIMTNPSLLLLDEPTS 319
Query: 228 GLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALP 287
LDST+A +V+ + IA+ G ++ TIHQPS R+ D+++VL+RG L+Y G
Sbjct: 320 SLDSTTALKIVQMLHCIAKAGKTIVTTIHQPSSRLFHRFDKLVVLSRGSLLYFGKASEAM 379
Query: 288 AHLAGFGRTVPDGENSLEYLLDVI 311
++ + G + N E+LLD++
Sbjct: 380 SYFSSIGCSPLLAMNPAEFLLDLV 403
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 820 | ||||||
| 224121142 | 812 | white-brown-complex ABC transporter fami | 0.979 | 0.988 | 0.769 | 0.0 | |
| 255579903 | 814 | ATP-binding cassette transporter, putati | 0.975 | 0.982 | 0.776 | 0.0 | |
| 449510949 | 813 | PREDICTED: LOW QUALITY PROTEIN: ABC tran | 0.976 | 0.985 | 0.731 | 0.0 | |
| 449439711 | 814 | PREDICTED: ABC transporter G family memb | 0.976 | 0.984 | 0.731 | 0.0 | |
| 225456187 | 801 | PREDICTED: ABC transporter G family memb | 0.970 | 0.993 | 0.735 | 0.0 | |
| 357521687 | 817 | ABC transporter G family member [Medicag | 0.982 | 0.986 | 0.743 | 0.0 | |
| 356512962 | 799 | PREDICTED: ABC transporter G family memb | 0.962 | 0.987 | 0.745 | 0.0 | |
| 356524706 | 794 | PREDICTED: ABC transporter G family memb | 0.945 | 0.976 | 0.739 | 0.0 | |
| 413916823 | 892 | hypothetical protein ZEAMMB73_719044 [Ze | 0.918 | 0.844 | 0.724 | 0.0 | |
| 242081115 | 955 | hypothetical protein SORBIDRAFT_07g00943 | 0.923 | 0.792 | 0.717 | 0.0 |
| >gi|224121142|ref|XP_002318509.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222859182|gb|EEE96729.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1254 bits (3246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 638/829 (76%), Positives = 703/829 (84%), Gaps = 26/829 (3%)
Query: 1 MANLGRMDTSKTLESLLDMDKSLAAKNNNNKDAVVAAAGLKMIPGHGLEFKNLSYSIMKK 60
M NLGR D + LE+LLDMDK+ K N V A K + GHGLEFKNLSYS+MKK
Sbjct: 1 MKNLGRSDANNNLETLLDMDKTALRKKNG-----VPAEPRKTMAGHGLEFKNLSYSVMKK 55
Query: 61 QKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRI 120
QKKDGVWITKEAYLL+DISGQAIRGE+MAIMGPSGAGKSTFLDA+AGRIA+GSL+GSVRI
Sbjct: 56 QKKDGVWITKEAYLLNDISGQAIRGEVMAIMGPSGAGKSTFLDAIAGRIARGSLQGSVRI 115
Query: 121 DGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQ 180
DGKPVTTSYMKM+SSYVMQDDQLFPMLTVFETFMFAAEVRLPPS+SR EKKKRV ELL Q
Sbjct: 116 DGKPVTTSYMKMISSYVMQDDQLFPMLTVFETFMFAAEVRLPPSVSRAEKKKRVDELLHQ 175
Query: 181 LGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240
LGL SATHTYIGNEG RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK
Sbjct: 176 LGLTSATHTYIGNEGNRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 235
Query: 241 VKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDG 300
VKDIAR GSI+LMTIHQPS+RIQMLLDRI +LARGRL+YMGSPVALP +L+ FGR +PDG
Sbjct: 236 VKDIARGGSIILMTIHQPSFRIQMLLDRITILARGRLIYMGSPVALPNYLSRFGRPLPDG 295
Query: 301 ENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPRTPAS--------- 351
ENS+EY LDVIKEYDESTVGL PLV YQRDGIKPDQAA+TP K PRT +
Sbjct: 296 ENSIEYFLDVIKEYDESTVGLDPLVFYQRDGIKPDQAAQTPVRKTPRTARTPRTPYMKTP 355
Query: 352 RSKHAISLRSQAFSFSTGNMTPGANSTQFDYYDDDDDDDEEFDKSLERKTAATPIINMQS 411
SK+AISLRSQ FS TG+MT A+S Q + D+DDDEEFD SLERK A TP MQS
Sbjct: 356 LSKYAISLRSQGFS-GTGDMTSQADSGQ--FDYYDEDDDEEFDNSLERKPARTP---MQS 409
Query: 412 GAYNNRLASQFYKDFSVWLYHGVVGTPRRRPSWTPARTPGRTPAKTPISGARSFVSGEYY 471
G +N RLASQFYK+F VW+YHG+ GTPRR PSWTPARTPGRTP KTP++G RS S +
Sbjct: 410 GVHNPRLASQFYKEFPVWVYHGIKGTPRRAPSWTPARTPGRTPGKTPMTGPRS-QSSSRF 468
Query: 472 STPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDMEEKVLDEPDHGPKFANPWLREVAVLS 531
STPQ SR K P + S DPY+PSYE E E+ LDE DHGPKFANPWLREVAVLS
Sbjct: 469 STPQHVVSRPKPPEFSNPSLDPYSPSYE---EFSCEEELDESDHGPKFANPWLREVAVLS 525
Query: 532 WRTALNVIRTPELFLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFFS 591
WRT LNV+RTPELFLSREIV AVMALILSSLFKNL H F+ INRLLNFYIFAVCLVFFS
Sbjct: 526 WRTVLNVVRTPELFLSREIVLAVMALILSSLFKNLGHPSFQDINRLLNFYIFAVCLVFFS 585
Query: 592 SNDAVPTFIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHS 651
SNDAVPTFIQERFIFIRET+HN+YRASSYV+SSL+VYLPFF +QGLTFAAIT+ LL L S
Sbjct: 586 SNDAVPTFIQERFIFIRETAHNSYRASSYVISSLIVYLPFFAVQGLTFAAITRFLLHLKS 645
Query: 652 SLLNFWMILFASLITTNAYVMLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPPY 711
+L NFW+IL+ASLITTNAYVMLVSALVPSYI GYAVVIATTALFFLTCGFFLKR IP Y
Sbjct: 646 NLFNFWLILYASLITTNAYVMLVSALVPSYITGYAVVIATTALFFLTCGFFLKRLQIPVY 705
Query: 712 WRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGPLGEVKLSKLHNTTAALLRPDC 771
WRWLHYISAIKYPFE +L+NEFKG CY+G P +LSPGPLGE++LS+LHN + L P+C
Sbjct: 706 WRWLHYISAIKYPFEGMLSNEFKGSRCYSGNPSELSPGPLGEIRLSQLHNDSK--LEPNC 763
Query: 772 TLIGEDIVYSMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYSKNVRK 820
LIG+DI++SMDI++++IW+DI ILLAWGVLYR FFYLVLRFYS N RK
Sbjct: 764 MLIGQDILFSMDIKMDSIWYDIAILLAWGVLYRFFFYLVLRFYSNNQRK 812
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255579903|ref|XP_002530787.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223529642|gb|EEF31588.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1238 bits (3204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 645/831 (77%), Positives = 711/831 (85%), Gaps = 31/831 (3%)
Query: 2 ANLGRMDTSKTLESLLDMDKSLAAKNNNNKDAVVAAAGLKMIPGHGLEFKNLSYSIMKKQ 61
A R +T+++LE+LLD+DK+ AA+ N + KMIPGHGLEF+++SYS+ KKQ
Sbjct: 3 AKASRKNTNRSLETLLDIDKTKAARKN-----AMPLDPRKMIPGHGLEFRDVSYSVKKKQ 57
Query: 62 KKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRID 121
KKDGVWIT+EAYLL+DISGQA+RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSV++D
Sbjct: 58 KKDGVWITREAYLLNDISGQAMRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVKVD 117
Query: 122 GKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQL 181
GKPVTTSYMKM+SSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISR+EKK+RVYELLDQL
Sbjct: 118 GKPVTTSYMKMISSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRNEKKQRVYELLDQL 177
Query: 182 GLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKV 241
GL S HTYIG+EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSA+SVVEKV
Sbjct: 178 GLTSTAHTYIGDEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAFSVVEKV 237
Query: 242 KDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDGE 301
K IA+ GSIVLMTIHQPSYRIQMLLDRI VLA GRLVYMGSP ALPA+L GF R VPDGE
Sbjct: 238 KHIAKGGSIVLMTIHQPSYRIQMLLDRIAVLASGRLVYMGSPAALPAYLCGFERPVPDGE 297
Query: 302 NSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPR----------TPAS 351
NSLEYLLDVIKEYDESTVGL PLVLYQR GIKPDQ ARTP PK P+ + +
Sbjct: 298 NSLEYLLDVIKEYDESTVGLDPLVLYQRQGIKPDQVARTPIPKTPKTPKTPRTPYTSTSG 357
Query: 352 RSKHAISLRSQAFSFSTGNMTPGANSTQFDYYDDDDDDDEEFDKSLERKTAATPIINMQS 411
+KHAI+L SQAFSF TG T A+S Q+ + DDDDDDD++FDKSLER+T +TP ++ QS
Sbjct: 358 SNKHAINLWSQAFSF-TG--TSRADSGQYGFNDDDDDDDDDFDKSLERRTMSTP-MHPQS 413
Query: 412 GAYNNRLASQFYKDFSVWLYHGVVGTPRRRPSWTPARTPGRTPAKTPISGARSFVSGEYY 471
G Y RLASQFYKDF VWLYHGV TPRR PSWTPA RTPAKTPISGARS VS ++
Sbjct: 414 GVYQPRLASQFYKDFPVWLYHGVKRTPRRAPSWTPA----RTPAKTPISGARSQVSSQFP 469
Query: 472 STPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDMEEKVLDEPDHGPKFANPWLREVAVLS 531
S Q PSR KTPV+FS+S D Y SY + + EE++LD P GPKFANPWLREVAVLS
Sbjct: 470 SA-QLAPSRPKTPVIFSSSVDSYTASYA-DFDLEEEELLDVPAQGPKFANPWLREVAVLS 527
Query: 532 WRTALNVIRTPELFLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFFS 591
WRTALNV+RTPELFLSREIV VMALILSSLFKNLS FKTINRLLNFYIFAVCLVFFS
Sbjct: 528 WRTALNVVRTPELFLSREIVLTVMALILSSLFKNLSEPTFKTINRLLNFYIFAVCLVFFS 587
Query: 592 SNDAVPTFIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHS 651
SNDAVPTFIQERFIFIRETSHNAYRASSYVVSSLLVYLPFF IQG TFAAIT+ L L S
Sbjct: 588 SNDAVPTFIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFAIQGFTFAAITRFALHLKS 647
Query: 652 SLLNFWMILFASLITTNAYVMLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPPY 711
+L NFW+IL+ASLITTNAYVMLVSALVPSYI GYAVVIATTALFFLTCGFFLKR IP Y
Sbjct: 648 NLFNFWIILYASLITTNAYVMLVSALVPSYITGYAVVIATTALFFLTCGFFLKRTQIPIY 707
Query: 712 WRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGPLGEVKLSKLHN--TTAALLRP 769
WRWLHYISAIKYPFEA+L+NEFKG +CYNG P DLSPGPLGE+K SKLHN TT
Sbjct: 708 WRWLHYISAIKYPFEAMLSNEFKGTKCYNGNPVDLSPGPLGEIKTSKLHNNFTTGT---- 763
Query: 770 DCTLIGEDIVYSMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYSKNVRK 820
+C LIGEDI++SMDI+++N+W+D+LILLAWGVLYRLFFY+VLRFYSKN RK
Sbjct: 764 NCPLIGEDILFSMDIKMDNLWYDVLILLAWGVLYRLFFYVVLRFYSKNERK 814
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449510949|ref|XP_004163819.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1226 bits (3172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 609/832 (73%), Positives = 693/832 (83%), Gaps = 31/832 (3%)
Query: 1 MANLGRMDTSKTLESLLDMDKSLAAKNNNNKDAVVAAAGLKMIPGHGLEFKNLSYSIMKK 60
MA GR +++LE+L+D+DK K + A K +PG GLEF NLSYS++KK
Sbjct: 1 MAVDGRRGVNRSLETLIDIDK----KAVAARAAAPLPQLQKTVPGQGLEFNNLSYSVIKK 56
Query: 61 QKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRI 120
KKDGVWI +E YLL+DISGQA+RGEIMAI+GPSGAGKSTFLDALAGR+A+GSLEGSVRI
Sbjct: 57 YKKDGVWIKRETYLLNDISGQALRGEIMAILGPSGAGKSTFLDALAGRMAKGSLEGSVRI 116
Query: 121 DGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQ 180
DGKPVT SYMKMVSSYVMQDDQLFPMLTVFETFMF+AEVRLP SISR+EKK RVYEL+DQ
Sbjct: 117 DGKPVTASYMKMVSSYVMQDDQLFPMLTVFETFMFSAEVRLPSSISREEKKNRVYELIDQ 176
Query: 181 LGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240
LGL+SA HTYIG+EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSA+SVVEK
Sbjct: 177 LGLQSAMHTYIGDEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAFSVVEK 236
Query: 241 VKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDG 300
VK+IAR GSIVLMTIHQPSYRIQ+LLDRI VLARGRL+Y+G P+ L AHL+GFGR VP+G
Sbjct: 237 VKEIARNGSIVLMTIHQPSYRIQLLLDRITVLARGRLIYVGGPLNLSAHLSGFGRPVPNG 296
Query: 301 ENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPRTPASRSKHA---- 356
EN++EYLLDVIKEYDESTVGL PLV+YQR GIKPDQ ARTP PK PRTP ++
Sbjct: 297 ENNIEYLLDVIKEYDESTVGLEPLVVYQRHGIKPDQVARTPVPKTPRTPYKKTTGPGPGP 356
Query: 357 -------ISLRSQAFSFSTGNMTPGANSTQFD-YYDDDDDDDEEFDKSLERKTAATPIIN 408
++LRSQAFS MT G NS+QFD Y +D++D++FD+SLERK+ T + N
Sbjct: 357 GSGGAKFLNLRSQAFS-----MTSGPNSSQFDSAYAYEDNEDDDFDRSLERKSTKTSVHN 411
Query: 409 MQSGAYNNRLASQFYKDFSVWLYHGVVGTPRRRPSWTPARTPGRTPAKTPISGARSFVSG 468
+SG +N RLAS+FYKD S W+Y+GV GTP R PSWTPARTPG+TPAKTP+SG RS +
Sbjct: 412 -RSGVHNPRLASEFYKDLSAWVYNGVRGTPHRNPSWTPARTPGQTPAKTPMSGVRSGI-- 468
Query: 469 EYYSTPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDMEEKVLDEPDHGPKFANPWLREVA 528
+ Q S K P VFS S D + PS++ D+EE VLDEPDHGPK+ANPWLREV
Sbjct: 469 ---VSSQIPSSHAKIPSVFSMSMDSHFPSFQD--TDIEE-VLDEPDHGPKYANPWLREVI 522
Query: 529 VLSWRTALNVIRTPELFLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLV 588
VLSWRTALNVIRTPELFLSREIV VMALILSS+FKNL H F+ +NRLLNFYIFAVCLV
Sbjct: 523 VLSWRTALNVIRTPELFLSREIVLTVMALILSSMFKNLGHASFRDVNRLLNFYIFAVCLV 582
Query: 589 FFSSNDAVPTFIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLK 648
FFSSNDAVPTFIQERFIFIRETSHNAYRASSYV+SSL+VYLPFF IQG TFA IT+ L
Sbjct: 583 FFSSNDAVPTFIQERFIFIRETSHNAYRASSYVISSLIVYLPFFAIQGFTFAVITQFWLH 642
Query: 649 LHSSLLNFWMILFASLITTNAYVMLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHI 708
L S+LL FW+ LFASLITTNAYVMLVSALVPSYI GYA+VIATTA+FFLTCGFFLKR I
Sbjct: 643 LKSNLLYFWITLFASLITTNAYVMLVSALVPSYITGYAIVIATTAIFFLTCGFFLKRTQI 702
Query: 709 PPYWRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGPLGEVKLSKLHNTTAALLR 768
P YWRWLHYISAIKYPFE+LL NEFKGK CY+G P DLSPGP+G+V+ SKLHNT+ L+
Sbjct: 703 PVYWRWLHYISAIKYPFESLLINEFKGKRCYSGNPSDLSPGPMGDVRFSKLHNTSTD-LK 761
Query: 769 PDCTLIGEDIVYSMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYSKNVRK 820
PDC LIGED+++SMDI +E+IW+D+ ILLAWG LYRLFFY+VLRFYSKN RK
Sbjct: 762 PDCLLIGEDVLFSMDINMESIWYDVAILLAWGFLYRLFFYVVLRFYSKNERK 813
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439711|ref|XP_004137629.1| PREDICTED: ABC transporter G family member 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1226 bits (3171), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 609/833 (73%), Positives = 693/833 (83%), Gaps = 32/833 (3%)
Query: 1 MANLGRMDTSKTLESLLDMDKSLAAKNNNNKDAVVAAAGLKMIPGHGLEFKNLSYSIMKK 60
MA GR +++LE+L+D+DK K + A K +PG GLEF NLSYS++KK
Sbjct: 1 MAVDGRRGVNRSLETLIDIDK----KAVAARAAAPLPQLQKTVPGQGLEFNNLSYSVIKK 56
Query: 61 QKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRI 120
KKDGVWI +E YLL+DISGQA+RGEIMAI+GPSGAGKSTFLDALAGR+A+GSLEGSVRI
Sbjct: 57 YKKDGVWIKRETYLLNDISGQALRGEIMAILGPSGAGKSTFLDALAGRMAKGSLEGSVRI 116
Query: 121 DGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQ 180
DGKPVT SYMKMVSSYVMQDDQLFPMLTVFETFMF+AEVRLP SISR+EKK RVYEL+DQ
Sbjct: 117 DGKPVTASYMKMVSSYVMQDDQLFPMLTVFETFMFSAEVRLPSSISREEKKNRVYELIDQ 176
Query: 181 LGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240
LGL+SA HTYIG+EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSA+SVVEK
Sbjct: 177 LGLQSAMHTYIGDEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAFSVVEK 236
Query: 241 VKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDG 300
VK+IAR GSIVLMTIHQPSYRIQ+LLDRI VLARGRL+Y+G P+ L AHL+GFGR VP+G
Sbjct: 237 VKEIARNGSIVLMTIHQPSYRIQLLLDRITVLARGRLIYVGGPLNLSAHLSGFGRPVPNG 296
Query: 301 ENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPRTPASRSKHA---- 356
EN++EYLLDVIKEYDESTVGL PLV+YQR GIKPDQ ARTP PK PRTP ++
Sbjct: 297 ENNIEYLLDVIKEYDESTVGLEPLVVYQRHGIKPDQVARTPVPKTPRTPYKKTTGPGPGP 356
Query: 357 --------ISLRSQAFSFSTGNMTPGANSTQFD-YYDDDDDDDEEFDKSLERKTAATPII 407
++LRSQAFS MT G NS+QFD Y +D++D++FD+SLERK+ T +
Sbjct: 357 GSGLGAKFLNLRSQAFS-----MTSGPNSSQFDSAYAYEDNEDDDFDRSLERKSTKTSVH 411
Query: 408 NMQSGAYNNRLASQFYKDFSVWLYHGVVGTPRRRPSWTPARTPGRTPAKTPISGARSFVS 467
N +SG +N RLAS+FYKD S W+Y+GV GTP R PSWTPARTPG+TPAKTP+SG RS +
Sbjct: 412 N-RSGVHNPRLASEFYKDLSAWVYNGVRGTPHRNPSWTPARTPGQTPAKTPMSGVRSGI- 469
Query: 468 GEYYSTPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDMEEKVLDEPDHGPKFANPWLREV 527
+ Q S K P VFS S D + PS++ D+EE VLDEPDHGPK+ANPWLREV
Sbjct: 470 ----VSSQIPSSHAKIPSVFSMSMDSHFPSFQD--TDIEE-VLDEPDHGPKYANPWLREV 522
Query: 528 AVLSWRTALNVIRTPELFLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCL 587
VLSWRTALNVIRTPELFLSREIV VMALILSS+FKNL H F+ +NRLLNFYIFAVCL
Sbjct: 523 IVLSWRTALNVIRTPELFLSREIVLTVMALILSSMFKNLGHASFRDVNRLLNFYIFAVCL 582
Query: 588 VFFSSNDAVPTFIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLL 647
VFFSSNDAVPTFIQERFIFIRETSHNAYRASSYV+SSL+VYLPFF IQG TFA IT+ L
Sbjct: 583 VFFSSNDAVPTFIQERFIFIRETSHNAYRASSYVISSLIVYLPFFAIQGFTFAVITQFWL 642
Query: 648 KLHSSLLNFWMILFASLITTNAYVMLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGH 707
L S+LL FW+ LFASLITTNAYVMLVSALVPSYI GYA+VIATTA+FFLTCGFFLKR
Sbjct: 643 HLKSNLLYFWITLFASLITTNAYVMLVSALVPSYITGYAIVIATTAIFFLTCGFFLKRTQ 702
Query: 708 IPPYWRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGPLGEVKLSKLHNTTAALL 767
IP YWRWLHYISAIKYPFE+LL NEFKGK CY+G P DLSPGP+G+V+ SKLHNT+ L
Sbjct: 703 IPVYWRWLHYISAIKYPFESLLINEFKGKRCYSGNPSDLSPGPMGDVRFSKLHNTSTD-L 761
Query: 768 RPDCTLIGEDIVYSMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYSKNVRK 820
+PDC LIGED+++SMDI +E+IW+D+ ILLAWG LYRLFFY+VLRFYSKN RK
Sbjct: 762 KPDCLLIGEDVLFSMDINMESIWYDVAILLAWGFLYRLFFYVVLRFYSKNERK 814
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456187|ref|XP_002278856.1| PREDICTED: ABC transporter G family member 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1189 bits (3075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 607/825 (73%), Positives = 678/825 (82%), Gaps = 29/825 (3%)
Query: 1 MANLGRMDTSKTLESLLDMDKSLAAKNNNNKDAVVAAAGLKMIPGHGLEFKNLSYSIMKK 60
MA + R ++ LE+LL MDKS+ +N V KMIPG GLEF NLSYS+ K+
Sbjct: 1 MAKVSRTGRNRNLETLLVMDKSVKIENQ-----AVTHEPRKMIPGQGLEFSNLSYSVPKQ 55
Query: 61 QKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRI 120
QKKDG ITKE YLL+D+SGQA+RGEIMAI+GPSGAGKSTFLDALAGRIA+GSLEGSV+I
Sbjct: 56 QKKDGATITKEVYLLNDLSGQAVRGEIMAILGPSGAGKSTFLDALAGRIARGSLEGSVKI 115
Query: 121 DGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQ 180
+GKPV+ SYMKMVSSYVMQDDQLF MLTVFET MFAAEVRLPPSISR EK+KRV+EL+DQ
Sbjct: 116 NGKPVSASYMKMVSSYVMQDDQLFAMLTVFETLMFAAEVRLPPSISRSEKRKRVFELIDQ 175
Query: 181 LGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240
LGL+SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKP LLFLDEPTSGLDSTSAYSVVEK
Sbjct: 176 LGLQSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPPLLFLDEPTSGLDSTSAYSVVEK 235
Query: 241 VKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDG 300
V+DIAR+GSIVLMTIHQPS+RIQMLLDRI VLARGRL+Y G P LP +L+ FGR VPDG
Sbjct: 236 VQDIARSGSIVLMTIHQPSFRIQMLLDRITVLARGRLIYTGRPTDLPTYLSAFGRPVPDG 295
Query: 301 ENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPRTP-----ASRSKH 355
ENSLEYLLDVIKEYDEST+G+ PLVLYQRDGIKPDQ ARTP PK P+TP + +
Sbjct: 296 ENSLEYLLDVIKEYDESTIGVDPLVLYQRDGIKPDQVARTPIPKTPKTPNTPYRKTPASQ 355
Query: 356 AISLRSQAFSFSTGNMTPGANSTQFDYYDDDDDDDEEFDKSLERKTAATPIINMQSGAYN 415
SLRSQ FSTGN TP ++ +Y+DDDDDD + SLERK ATP S AYN
Sbjct: 356 LFSLRSQP--FSTGNSTPRLDA----HYNDDDDDDFD--NSLERKI-ATPKHFHGSAAYN 406
Query: 416 NRLASQFYKDFSVWLYHGVVGTPRRRPSWTPARTPGRTPAKTPISGARSFVSGEYYSTPQ 475
RLAS FYKDF VWLY+GV GTPRR P+WTPARTPGRTP KTP++G R +VS YS PQ
Sbjct: 407 PRLASHFYKDFPVWLYNGVKGTPRRPPTWTPARTPGRTPGKTPMAGPRRYVSSR-YSLPQ 465
Query: 476 QNPSRLKTPVVFSTSTDPYAPSYEQELEDMEEKVLDEPDHGPKFANPWLREVAVLSWRTA 535
Q P+ +KTP VFS S + Y SYE E+E VLDEP+H KFANPWLREVAVLSWR
Sbjct: 466 QTPAHVKTP-VFSPSAETYEASYELEME-----VLDEPEHRAKFANPWLREVAVLSWRNI 519
Query: 536 LNVIRTPELFLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFFSSNDA 595
LN+IRTPELFLSREIV VMALILSSLF NL KT+NRLLNFYIFAVCLVFFSSNDA
Sbjct: 520 LNIIRTPELFLSREIVLLVMALILSSLFPNLGDDSLKTVNRLLNFYIFAVCLVFFSSNDA 579
Query: 596 VPTFIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSSLLN 655
VPTFIQERFIF+RET+HNAYRASSYVVSSL+VYLPFF IQGLTFA IT+ +L L S ++
Sbjct: 580 VPTFIQERFIFMRETAHNAYRASSYVVSSLIVYLPFFAIQGLTFAMITRYILHLKSDVIF 639
Query: 656 FWMILFASLITTNAYVMLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWL 715
FW+IL+ASLITTNAYVMLVSALVPSYI GYAVVIATTALFFL+CGFFLKR IP YW WL
Sbjct: 640 FWLILYASLITTNAYVMLVSALVPSYITGYAVVIATTALFFLSCGFFLKRTKIPNYWIWL 699
Query: 716 HYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGPLGEVKLSKLHNTTAALLRPDCTLIG 775
HYISAIKYPFEALL NEF+G CY G+P DLSPGPLG + S HN ++ +CTLIG
Sbjct: 700 HYISAIKYPFEALLINEFQGTRCYKGSPADLSPGPLGNLNYSPEHNKFVSI---NCTLIG 756
Query: 776 EDIVYSMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYSKNVRK 820
+DI+ SMD+Q++NIW+DI ILL WGVLYRLFFY+VLRFYSKN RK
Sbjct: 757 DDILSSMDLQLKNIWYDIAILLGWGVLYRLFFYVVLRFYSKNERK 801
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357521687|ref|XP_003631132.1| ABC transporter G family member [Medicago truncatula] gi|258518201|gb|ACV73541.1| STR [Medicago truncatula] gi|258518203|gb|ACV73542.1| STR [Medicago truncatula] gi|355525154|gb|AET05608.1| ABC transporter G family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1186 bits (3068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 618/831 (74%), Positives = 683/831 (82%), Gaps = 25/831 (3%)
Query: 1 MANLGRMDTSKTLESLLDMDKSLAAKNNNNKDAVVAAAGLKMIPGHGLEFKNLSYSIMKK 60
MA L R T+K+LESL+D K N N+ K IPG+GLEF NLSYSI+KK
Sbjct: 1 MARLERDGTNKSLESLMDSHKPGGTTTNLNQ-----LRTQKSIPGYGLEFTNLSYSIIKK 55
Query: 61 QKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRI 120
QKKDGVWI KE YLLHDISGQAI+GEIMAIMGPSGAGKSTFLDALAGRIA+GSL+GSVRI
Sbjct: 56 QKKDGVWINKETYLLHDISGQAIKGEIMAIMGPSGAGKSTFLDALAGRIAKGSLQGSVRI 115
Query: 121 DGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQ 180
DGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRV+ELL++
Sbjct: 116 DGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVHELLNK 175
Query: 181 LGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240
LGL+SATHTYIG+EGRRGVSGGERRRVSIGI+IIHKPSLLFLDEPTSGLDSTSAYSVVEK
Sbjct: 176 LGLQSATHTYIGDEGRRGVSGGERRRVSIGIEIIHKPSLLFLDEPTSGLDSTSAYSVVEK 235
Query: 241 VKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDG 300
+KDIA+ GSIVLMTIHQPS+RIQMLLD+I +LARGRL+YMG P AL HL+GFGR VPDG
Sbjct: 236 IKDIAQGGSIVLMTIHQPSFRIQMLLDKITILARGRLIYMGRPDALHTHLSGFGRPVPDG 295
Query: 301 ENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPRTPASR----SKHA 356
EN++EYLLDVI EYD++TVGL PLV YQ DG KPD AA TP PK PRTP R SKH
Sbjct: 296 ENNIEYLLDVITEYDQATVGLDPLVQYQHDGHKPDPAAMTPVPKPPRTPYRRNTPASKHM 355
Query: 357 ISLRSQAFSFSTGNMTPGANSTQFDYYDDDDDDDEEFDKSLERKTAATPIINMQSGAYNN 416
ISLRSQ F+ TP +S+QF DDD+DDDE FD SLER++ T + SG Y
Sbjct: 356 ISLRSQGFTAG----TPQPDSSQFGLDDDDNDDDENFDNSLERRSVQTSRNIVTSGVY-P 410
Query: 417 RLASQFY-----KDFSVWLYHGVVGTPRRRPSWTPARTPGRTPAKTPISGARSFVSGEYY 471
RLASQFY KDFSVWLY+GVVGTPRR PSWTPARTPG TP KTP+SG RSFVS ++
Sbjct: 411 RLASQFYQDFSAKDFSVWLYNGVVGTPRRPPSWTPARTPGWTPGKTPLSGPRSFVSNQHS 470
Query: 472 STPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDME-EKVLDEPDHGPKFANPWLREVAVL 530
++ Q KT V S D A SY E+ E E+VLDEPD GPK+ANPWLREVAVL
Sbjct: 471 ASYQDPYYIQKTNTVVGQSMDYSATSYAPSYEEFEIEEVLDEPDLGPKYANPWLREVAVL 530
Query: 531 SWRTALNVIRTPELFLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFF 590
SWRT LNVIRTPELF SREIV VMAL+LS++FKNL F INRLLNFYIFAVCLVFF
Sbjct: 531 SWRTVLNVIRTPELFASREIVLTVMALVLSTIFKNLGDTTFIDINRLLNFYIFAVCLVFF 590
Query: 591 SSNDAVPTFIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLH 650
SSNDAVP+FI ERFIFIRETSHNAYRASSYV+SSL+VYLPFF +QGLTFA ITKL+L L
Sbjct: 591 SSNDAVPSFIMERFIFIRETSHNAYRASSYVISSLIVYLPFFAVQGLTFAVITKLMLHLK 650
Query: 651 SSLLNFWMILFASLITTNAYVMLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPP 710
S+L NFWMILFASLITTNAYVMLVSALVPSYI GYAVVIATTALFFLTCGFFLKR IP
Sbjct: 651 SNLFNFWMILFASLITTNAYVMLVSALVPSYITGYAVVIATTALFFLTCGFFLKRTQIPA 710
Query: 711 YWRWLHYISAIKYPFEALLTNEFK-GKECYNGAPGDLSPGPLGEVKLSKLHNTTAALLRP 769
YW+WLHYISAIKYPFE LL NEFK + CY+G DLSPGPLG+VK SK HN + L
Sbjct: 711 YWKWLHYISAIKYPFEGLLINEFKNNRGCYSGNKADLSPGPLGDVKPSKHHNASLPL--- 767
Query: 770 DCTLIGEDIVYSMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYSKNVRK 820
+C L+GED++ +MDI +E++W+DILILLAWGVLYR FFYLVLRFYSKN RK
Sbjct: 768 NC-LLGEDVLSTMDITMESLWYDILILLAWGVLYRFFFYLVLRFYSKNERK 817
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512962|ref|XP_003525183.1| PREDICTED: ABC transporter G family member 18-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1184 bits (3063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 619/830 (74%), Positives = 678/830 (81%), Gaps = 41/830 (4%)
Query: 1 MANLGRMDTSKTLESLLDMDKSLAAKNNNNKDAVVAAAGLKMIPGHGLEFKNLSYSIMKK 60
MA R +K+LE+L+D DK +N N K IPG+GLEF NLSYSI+KK
Sbjct: 1 MARPERTGRNKSLETLIDSDKPGMGRNVNQLKTQ------KSIPGYGLEFSNLSYSIIKK 54
Query: 61 QKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRI 120
QK DGVWI KE YLLHDISGQAI+GEIMAIMGPSGAGKSTFLDALAGRIA+GSLEGSVRI
Sbjct: 55 QKNDGVWINKETYLLHDISGQAIKGEIMAIMGPSGAGKSTFLDALAGRIAKGSLEGSVRI 114
Query: 121 DGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQ 180
DGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISR EKKKRVYELLDQ
Sbjct: 115 DGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRSEKKKRVYELLDQ 174
Query: 181 LGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240
LGL+SATHTYIG+EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK
Sbjct: 175 LGLQSATHTYIGDEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 234
Query: 241 VKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDG 300
VKDIAR GSIVLMTIHQPS+RIQMLLD+I VLARGRL+YMG P A+ AH++ FGR VPDG
Sbjct: 235 VKDIARGGSIVLMTIHQPSFRIQMLLDQITVLARGRLIYMGRPDAVQAHMSRFGRPVPDG 294
Query: 301 ENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPRTPASR----SKHA 356
ENS+EYLLDVI EYD++TVGL PLV +QRDG+KPD AA TP P+ PRTP R SKH
Sbjct: 295 ENSIEYLLDVISEYDQATVGLDPLVQFQRDGLKPDPAAMTPVPRTPRTPYKRNTPASKHM 354
Query: 357 ISLRSQAFSFSTGNMTPGANSTQFDYYDDDDDDDEEFDKSLERKTAATPIINMQSGAYNN 416
ISLRSQ F+ G P +S F Y+ +DDDD++ + SLERK+A TP NM SG +
Sbjct: 355 ISLRSQG--FTAGTQQP--DSVPFSYHGEDDDDEDFDN-SLERKSAPTP-RNMISGVH-P 407
Query: 417 RLASQFY-----KDFSVWLYHGVVGTPRRRPSWTPARTPGRTPAKTPISGARSFVSGEYY 471
RLASQFY KDFSVWLYHGVVGTP R+PSWTPARTPG T KTP+SG RS VS +Y
Sbjct: 408 RLASQFYKDFSAKDFSVWLYHGVVGTPHRQPSWTPARTPGWTTGKTPMSGPRSAVSNQYS 467
Query: 472 STPQQNPSRLKTPVVFSTSTDPYAPSYEQ-ELEDMEEKVLDEPDHGPKFANPWLREVAVL 530
+ P V S D A SYE E+E+ VLDE + G K+ANPWLREVAVL
Sbjct: 468 A----------APAVVGQSMDYSATSYEGFEIEE----VLDELNFGSKYANPWLREVAVL 513
Query: 531 SWRTALNVIRTPELFLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFF 590
SWRTALNVIRTPELFLSREIV VMALILS++F+NLSH FK INRLLNFYIFAVCLVFF
Sbjct: 514 SWRTALNVIRTPELFLSREIVLTVMALILSNIFRNLSHPLFKDINRLLNFYIFAVCLVFF 573
Query: 591 SSNDAVPTFIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLH 650
SSNDAVP+FI ERFIFIRETSHNAYRASSYV+SSL+VYLPFF +QG TFA ITK +L L
Sbjct: 574 SSNDAVPSFIMERFIFIRETSHNAYRASSYVISSLIVYLPFFAVQGFTFAVITKKMLHLR 633
Query: 651 SSLLNFWMILFASLITTNAYVMLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPP 710
SSLL FW+IL+ASLITTNAYVMLVSALVPSYI GYAVVIATTALFFLTCGFFLKR HIP
Sbjct: 634 SSLLYFWLILYASLITTNAYVMLVSALVPSYITGYAVVIATTALFFLTCGFFLKRTHIPI 693
Query: 711 YWRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGPLGEVKLSKLHNTTAALLRPD 770
YWRWLHYISAIKYPFEALLTNEF CY G DLSPGPLG++KLSK HN++ P
Sbjct: 694 YWRWLHYISAIKYPFEALLTNEFNNLNCYTGNLTDLSPGPLGDLKLSKHHNSSL----PA 749
Query: 771 CTLIGEDIVYSMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYSKNVRK 820
L+GEDI+ SMDI ++NIW+DILILLAWGVL R FFYLVLRFYSKN RK
Sbjct: 750 NCLLGEDILSSMDITMDNIWYDILILLAWGVLCRFFFYLVLRFYSKNERK 799
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524706|ref|XP_003530969.1| PREDICTED: ABC transporter G family member 18-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1160 bits (3000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 606/820 (73%), Positives = 666/820 (81%), Gaps = 45/820 (5%)
Query: 10 SKTLESLLDMDKSLAAKNNNNKDAVVAAAGLKMIPGHGLEFKNLSYSIMKKQKKDGVWIT 69
+K+LE+L+D DK +N N K IPG+GLEF NLSYSI+KKQKKDGVWI
Sbjct: 11 NKSLETLMDSDKPGIGRNVNQLKIQ------KSIPGYGLEFSNLSYSIIKKQKKDGVWIN 64
Query: 70 KEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY 129
KE+YLLHDISGQAI+GE+MAIMGPSGAGKSTFLDALAGRIA+GSLEGSVRIDGKPVTTSY
Sbjct: 65 KESYLLHDISGQAIKGEVMAIMGPSGAGKSTFLDALAGRIAKGSLEGSVRIDGKPVTTSY 124
Query: 130 MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHT 189
MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISR EKKKRVYELLDQLGL+SATHT
Sbjct: 125 MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRSEKKKRVYELLDQLGLQSATHT 184
Query: 190 YIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGS 249
YIG+EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR GS
Sbjct: 185 YIGDEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARGGS 244
Query: 250 IVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDGENSLEYLLD 309
IVLMTIHQPS+RIQMLLD+I VLARGRL+YMG + AH++ FGR VPDGENS+EYLLD
Sbjct: 245 IVLMTIHQPSFRIQMLLDQITVLARGRLIYMGKADEVQAHMSRFGRPVPDGENSIEYLLD 304
Query: 310 VIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIP---RTPASRSKHAISLRSQAFSF 366
VI EYD++TVGL PLV +QRDG+KP AA TP P+ P TPA SKH ISLRSQ F
Sbjct: 305 VISEYDQATVGLDPLVQFQRDGLKPHPAAMTPVPRTPYKRNTPA--SKHMISLRSQG--F 360
Query: 367 STGNMTPGANSTQFDYYDDDDDDDEEFDKSLERKTAATPIINMQSGAYNNRLASQFY--- 423
+ G P + + D +D D+ SLERK+A TP NM SG + RLASQFY
Sbjct: 361 TAGTQQPDSADDEDDDDAEDFDN------SLERKSAPTP-RNMTSGVH-QRLASQFYQDF 412
Query: 424 --KDFSVWLYHGVVGTPRRRPSWTPARTPGRTPAKTPISGARSFVSGEYYSTPQQNPSRL 481
KDFSVWLYHGVVGTPRR+PSWTPARTPG TP KTP+SG S VS +Y +
Sbjct: 413 SAKDFSVWLYHGVVGTPRRQPSWTPARTPGWTPGKTPMSGPTSAVSNQYSA--------- 463
Query: 482 KTPVVFSTSTDPYAPSYEQ-ELEDMEEKVLDEPDHGPKFANPWLREVAVLSWRTALNVIR 540
P V S D A SYE E+E+ VLDEP+ G K+ANPWLREVAVLSWRTALNVIR
Sbjct: 464 -APFVVGQSMDYSATSYEGFEIEE----VLDEPNFGSKYANPWLREVAVLSWRTALNVIR 518
Query: 541 TPELFLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFFSSNDAVPTFI 600
TPELFLSREIV AVMALILSS+F NLSH F+ INRLLNFYIFAVCLVFFSSNDAVP+FI
Sbjct: 519 TPELFLSREIVLAVMALILSSIFGNLSHPFFEDINRLLNFYIFAVCLVFFSSNDAVPSFI 578
Query: 601 QERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSSLLNFWMIL 660
ERFIFIRETSHNAYRASSYV+SSL+VYLPFF +QG TFA ITK +L L SSLL FW+IL
Sbjct: 579 MERFIFIRETSHNAYRASSYVISSLIVYLPFFAVQGFTFAVITKKMLHLRSSLLYFWLIL 638
Query: 661 FASLITTNAYVMLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISA 720
+ASLITTNAYVMLVSALVPSYI GYAVVIATTALFFLTCGFFLKR IP YW WLHYISA
Sbjct: 639 YASLITTNAYVMLVSALVPSYITGYAVVIATTALFFLTCGFFLKRTQIPFYWMWLHYISA 698
Query: 721 IKYPFEALLTNEFKGKECYNGAPGDLSPGPLGEVKLSKLHNTTAALLRPDCTLIGEDIVY 780
IKYPFEALLTNEF CY G +LS GPLG++KLSK HN++ P L+G+DI+
Sbjct: 699 IKYPFEALLTNEFNNLNCYTGNLAELSHGPLGDLKLSKHHNSSL----PANCLLGKDILS 754
Query: 781 SMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYSKNVRK 820
SMDI ++NIW+DILILLAW VLYR FFYLVLRFYSKN RK
Sbjct: 755 SMDITMDNIWYDILILLAWDVLYRFFFYLVLRFYSKNERK 794
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413916823|gb|AFW56755.1| hypothetical protein ZEAMMB73_719044 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 1125 bits (2911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/780 (72%), Positives = 641/780 (82%), Gaps = 27/780 (3%)
Query: 44 PGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLD 103
PG GLEFK LSYS++KKQKKDGV + KE YLL+DISGQA+RG++ AI+GPSGAGKSTFLD
Sbjct: 137 PGQGLEFKELSYSVIKKQKKDGVKVKKEVYLLNDISGQALRGQVTAILGPSGAGKSTFLD 196
Query: 104 ALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP 163
ALAGRIA+GSLEGSV IDG+ VTTSYMK +SSYVMQDDQLFPMLTV ET FAAEVRLPP
Sbjct: 197 ALAGRIAKGSLEGSVSIDGRSVTTSYMKQISSYVMQDDQLFPMLTVLETLRFAAEVRLPP 256
Query: 164 SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLD 223
S+SR EK RV+EL++QLGL++ HTYIG+EG RGVSGGERRRVSIG DIIHKPSLLFLD
Sbjct: 257 SLSRAEKLNRVWELIEQLGLQTTAHTYIGDEGIRGVSGGERRRVSIGTDIIHKPSLLFLD 316
Query: 224 EPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
EPTSGLDSTSAYSVVEKVK+IA+ GSIVLMTIHQPS+RIQMLLDRI++LARGRL+Y+G+P
Sbjct: 317 EPTSGLDSTSAYSVVEKVKEIAKGGSIVLMTIHQPSFRIQMLLDRIVILARGRLIYLGTP 376
Query: 284 VALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFP 343
+ LP HLAGFGR VPDGENS+EYLLDVIKEYDEST+GL PLV YQRDG KPD+AA+TP P
Sbjct: 377 LTLPTHLAGFGRPVPDGENSIEYLLDVIKEYDESTLGLEPLVAYQRDGSKPDEAAKTPIP 436
Query: 344 KIPRTPASRSKH--AISLRSQAFSFSTGNMTPGANS-TQFDYYDDDDDDDEEFDKSLERK 400
K PRTP +S I L+S FS +TG TP AN + F+ Y + DD+DEEFD SLERK
Sbjct: 437 KTPRTPYQKSVQFRQIQLKSNQFSVTTG--TPHANPMSNFESY-NIDDEDEEFDNSLERK 493
Query: 401 TAATPIINMQSGAYNNRLASQFYKDFSVWLYHGVVGTPRRRPSWTPARTPGRTPAKTPIS 460
+ TP ++ + Y+ RLASQFYKDFSVW+YHGV GTP R+P+WTPARTP RTP +
Sbjct: 494 S-HTP-LHTGTSTYHPRLASQFYKDFSVWVYHGVTGTPHRKPTWTPARTPARTPVSS--Y 549
Query: 461 GARSFVSGEYYSTPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDMEEKVLDEPDHGPKFA 520
RS V+ ++ P Q+P + PV P PSY + ++E LD P+ GPKFA
Sbjct: 550 QQRSRVATPQHAPPPQSP---REPVF-----KPEEPSYHEYQLELEP--LDAPEDGPKFA 599
Query: 521 NPWLREVAVLSWRTALNVIRTPELFLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNF 580
NPW REV VLSWRTALNV+RTPELFLSREIV AVMALILS+LF LS +F TINRLLNF
Sbjct: 600 NPWFREVVVLSWRTALNVVRTPELFLSREIVLAVMALILSTLFHRLSDANFTTINRLLNF 659
Query: 581 YIFAVCLVFFSSNDAVPTFIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFA 640
YIFAVCLVFFSSNDAVPTFIQERFIFIRE SHNAYRASSYVVSSL+VYLPFF IQG TFA
Sbjct: 660 YIFAVCLVFFSSNDAVPTFIQERFIFIRERSHNAYRASSYVVSSLIVYLPFFAIQGFTFA 719
Query: 641 AITKLLLKLHSSLLNFWMILFASLITTNAYVMLVSALVPSYIAGYAVVIATTALFFLTCG 700
ITK +L L SSL+NFW+ILFASLITTNAYVMLVSALVPSYI GYAVVIATTALFF+TCG
Sbjct: 720 VITKFMLHLQSSLVNFWIILFASLITTNAYVMLVSALVPSYITGYAVVIATTALFFITCG 779
Query: 701 FFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGPLGEVKLSKLH 760
FFLKR IP WRWLHYISAIKYPFEALL NEFKG ECY G LSPGPLG+V S L+
Sbjct: 780 FFLKRTMIPMAWRWLHYISAIKYPFEALLVNEFKGSECYVGTQNQLSPGPLGQV--SNLN 837
Query: 761 NTTAALLRPDCTLIGEDIVYSMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYSKNVRK 820
+T+ C L+G+D++ +MDI I+NIW D+ ILLAWGVLYRL FY+VLRFYSKN RK
Sbjct: 838 STSTT-----CPLVGQDVLSTMDIAIDNIWIDVAILLAWGVLYRLVFYVVLRFYSKNERK 892
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242081115|ref|XP_002445326.1| hypothetical protein SORBIDRAFT_07g009430 [Sorghum bicolor] gi|241941676|gb|EES14821.1| hypothetical protein SORBIDRAFT_07g009430 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 1122 bits (2902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/790 (71%), Positives = 646/790 (81%), Gaps = 33/790 (4%)
Query: 39 GLKMI--PGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGA 96
G K+I PG GLEFK LSYS++KKQKKDGV + KE YLL+DISGQA+RG++ AI+GPSGA
Sbjct: 191 GEKVINFPGQGLEFKELSYSVIKKQKKDGVKVKKEVYLLNDISGQALRGQVTAILGPSGA 250
Query: 97 GKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFA 156
GKSTFLDALAGRIA+GSLEGSV IDG+ VTTSYMK +SSYVMQDDQLFPMLTV ET FA
Sbjct: 251 GKSTFLDALAGRIAKGSLEGSVSIDGRSVTTSYMKQISSYVMQDDQLFPMLTVLETLRFA 310
Query: 157 AEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHK 216
AEVRLPPS+SR EK KRV+EL++QLGL++ HTYIG+EG RGVSGGERRRVSIG DIIHK
Sbjct: 311 AEVRLPPSLSRAEKLKRVWELIEQLGLQTTAHTYIGDEGIRGVSGGERRRVSIGTDIIHK 370
Query: 217 PSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276
PSLLFLDEPTSGLDSTSAYSVVEKVK+IA+ GSIVLMTIHQPS+RIQMLLDRI++LARGR
Sbjct: 371 PSLLFLDEPTSGLDSTSAYSVVEKVKEIAKGGSIVLMTIHQPSFRIQMLLDRIVILARGR 430
Query: 277 LVYMGSPVALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQ 336
L+Y+GSP+ LPAHLAGFGR VPDGENS+EYLLDVIKEYDEST+GL PLV YQRDG KPD+
Sbjct: 431 LIYLGSPITLPAHLAGFGRPVPDGENSIEYLLDVIKEYDESTLGLDPLVAYQRDGSKPDE 490
Query: 337 AARTPFPKIPRTPASRSKH--AISLRSQAFSFSTGNMTPGANST--QFDYYDDDDDDDEE 392
AA+TP PK PRTP +S + L+S FS +TG TP A +T F+ Y + DD++EE
Sbjct: 491 AAKTPIPKTPRTPHQKSVQFRQMQLKSNQFSAATG--TPHATNTFSNFESY-NIDDEEEE 547
Query: 393 FDKSLERKTAATPIINMQSGAYNNRLASQFYKDFSVWLYHGVVGTPRRRPSWTPARTPGR 452
FD SLERK+ TP ++ + Y+ RLASQFYKDFSVW+YHGV GTP R+P+W+ TP R
Sbjct: 548 FDNSLERKS-HTP-LHTGTSTYHPRLASQFYKDFSVWVYHGVTGTPHRKPTWS---TPAR 602
Query: 453 TPAKTPISGARSFVSGEYYSTPQQN--PSRLKTPVVFSTSTDPYAPSYEQELEDMEEKVL 510
TPA+TP+S S+ ++TPQ P PV P PSY + +E + L
Sbjct: 603 TPARTPMS---SYHQRSRFATPQHAPPPQSPHEPVF-----KPEEPSYHE--YQLELEPL 652
Query: 511 DEPDHGPKFANPWLREVAVLSWRTALNVIRTPELFLSREIVFAVMALILSSLFKNLSHHD 570
D P+ GPKFANPWLREVAVLSWRTALNV+RTPELFLSREIV VMALILS+LF LS +
Sbjct: 653 DAPEDGPKFANPWLREVAVLSWRTALNVVRTPELFLSREIVLTVMALILSTLFHRLSDSN 712
Query: 571 FKTINRLLNFYIFAVCLVFFSSNDAVPTFIQERFIFIRETSHNAYRASSYVVSSLLVYLP 630
F TINRLLNFYIFAVCLVFFSSNDAVPTFIQERFIFIRE SHNAYRASSYV+SSL+VYLP
Sbjct: 713 FITINRLLNFYIFAVCLVFFSSNDAVPTFIQERFIFIRERSHNAYRASSYVISSLIVYLP 772
Query: 631 FFGIQGLTFAAITKLLLKLHSSLLNFWMILFASLITTNAYVMLVSALVPSYIAGYAVVIA 690
FF IQG TFA ITK +L LHS+L+NFW+ILFASLITTNAYVMLVSALVPSYI GYAVVIA
Sbjct: 773 FFAIQGFTFAVITKYMLHLHSNLVNFWIILFASLITTNAYVMLVSALVPSYITGYAVVIA 832
Query: 691 TTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGP 750
TTALFF+TCGFFLKR IP WRWLHYISAIKYPFEALL NEFKG CY G LSPGP
Sbjct: 833 TTALFFITCGFFLKRTKIPMAWRWLHYISAIKYPFEALLVNEFKGDHCYVGTQNQLSPGP 892
Query: 751 LGEVKLSKLHNTTAALLRPDCTLIGEDIVYSMDIQIENIWFDILILLAWGVLYRLFFYLV 810
LG+V S L+ T+ C L+G+D++ +MDI I+NIW D+ ILLAWGVLYRL FY+V
Sbjct: 893 LGQV--SNLNATSTT-----CPLVGQDVLDTMDISIDNIWIDVAILLAWGVLYRLIFYVV 945
Query: 811 LRFYSKNVRK 820
LRFYSKN RK
Sbjct: 946 LRFYSKNERK 955
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 820 | ||||||
| TAIR|locus:2097258 | 736 | ABCG16 "ATP-binding cassette G | 0.395 | 0.440 | 0.453 | 1.8e-112 | |
| TAIR|locus:2039682 | 740 | ABCG1 "ATP-binding cassette G1 | 0.370 | 0.410 | 0.483 | 2.3e-112 | |
| TAIR|locus:2173184 | 727 | ABCG6 "ATP-binding cassette G6 | 0.368 | 0.415 | 0.481 | 1e-111 | |
| TAIR|locus:2049806 | 755 | ABCG2 "ATP-binding cassette G2 | 0.391 | 0.425 | 0.470 | 3.4e-111 | |
| TAIR|locus:2083946 | 739 | ABCG20 "ATP-binding cassette G | 0.390 | 0.433 | 0.464 | 2.4e-108 | |
| TAIR|locus:2097218 | 708 | ABCG18 "ATP-binding cassette G | 0.385 | 0.446 | 0.476 | 3.1e-106 | |
| TAIR|locus:2097208 | 662 | ABCG17 "ATP-binding cassette G | 0.345 | 0.427 | 0.489 | 1.3e-105 | |
| TAIR|locus:2100641 | 725 | ABCG19 "ATP-binding cassette G | 0.406 | 0.459 | 0.454 | 1.5e-104 | |
| TAIR|locus:2009640 | 590 | ABCG10 "ATP-binding cassette G | 0.318 | 0.442 | 0.379 | 1.5e-74 | |
| TAIR|locus:2054142 | 649 | ABCG5 "ATP-binding cassette G5 | 0.291 | 0.368 | 0.377 | 1.8e-66 |
| TAIR|locus:2097258 ABCG16 "ATP-binding cassette G16" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 705 (253.2 bits), Expect = 1.8e-112, Sum P(2) = 1.8e-112
Identities = 152/335 (45%), Positives = 215/335 (64%)
Query: 48 LEFKNLSYSIMKKQKKDG----VW----ITKEAYLLHDISGQAIRGEIMAIMGPSGAGKS 99
L F NL+Y++ ++K D W +K LL +ISG+ GEI+A++G SG+GKS
Sbjct: 73 LSFNNLTYNVSVRRKLDFHDLVPWRRTSFSKTKTLLDNISGETRDGEILAVLGASGSGKS 132
Query: 100 TFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEV 159
T +DALA RIA+GSL+G+V ++G+ + + +K++S+YVMQDD LFPMLTV ET MFAAE
Sbjct: 133 TLIDALANRIAKGSLKGTVTLNGEALQSRMLKVISAYVMQDDLLFPMLTVEETLMFAAEF 192
Query: 160 RLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSL 219
RLP S+ + +KK RV L+DQLG+R+A T IG+ DIIH P +
Sbjct: 193 RLPRSLPKSKKKLRVQALIDQLGIRNAAKTIIGDEGHRGISGGERRRVSIGIDIIHDPIV 252
Query: 220 LFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279
LFLDEPTSGLDSTSA+ VV+ +K IA +GSI++M+IHQPS+R+ LLDR+I L+RG V+
Sbjct: 253 LFLDEPTSGLDSTSAFMVVKVLKRIAESGSIIIMSIHQPSHRVLSLLDRLIFLSRGHTVF 312
Query: 280 MGSPVALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAAR 339
GSP +LP+ AGFG +P+ EN E+ LD+I+E + S G LV + + K + +
Sbjct: 313 SGSPASLPSFFAGFGNPIPENENQTEFALDLIRELEGSAGGTRGLVEFNK---KWQEMKK 369
Query: 340 TPFPKIPRTPASRSKHAISLRSQAFSFSTGNMTPG 374
P+ PAS + + + + S S G + G
Sbjct: 370 QSNPQTLTPPASPNPNLTLKEAISASISRGKLVSG 404
|
|
| TAIR|locus:2039682 ABCG1 "ATP-binding cassette G1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 2.3e-112, Sum P(2) = 2.3e-112
Identities = 150/310 (48%), Positives = 204/310 (65%)
Query: 70 KEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY 129
K LL++ISG+ GEIMA++G SG+GKST +DALA RIA+GSL+G+V+++G+ + +
Sbjct: 105 KTKTLLNNISGETRDGEIMAVLGASGSGKSTLIDALANRIAKGSLKGTVKLNGETLQSRM 164
Query: 130 MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHT 189
+K++S+YVMQDD LFPMLTV ET MFAAE RLP S+ + +KK RV L+DQLG+R+A T
Sbjct: 165 LKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLPKSKKKLRVQALIDQLGIRNAAKT 224
Query: 190 YIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGS 249
IG+ DIIH P LLFLDEPTSGLDSTSA+ VV+ +K IA++GS
Sbjct: 225 IIGDEGHRGISGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFMVVKVLKRIAQSGS 284
Query: 250 IVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDGENSLEYLLD 309
IV+M+IHQPS+R+ LLDR+I L+RG VY GSP +LP FG +P+ EN E+ LD
Sbjct: 285 IVIMSIHQPSHRVLGLLDRLIFLSRGHTVYSGSPASLPRFFTEFGSPIPENENRTEFALD 344
Query: 310 VIKEYDESTVGLGPLVLYQRDGIK-PDQAARTPFPKIPRTPASRSKHAISLRSQ-AFSFS 367
+I+E + S G L+ + + + Q+ R P P TP S ++L+ A S S
Sbjct: 345 LIRELEGSAGGTRGLIEFNKKWQEMKKQSNRQP----PLTPPSSPYPNLTLKEAIAASIS 400
Query: 368 TGNMTPGANS 377
G + G S
Sbjct: 401 RGKLVSGGES 410
|
|
| TAIR|locus:2173184 ABCG6 "ATP-binding cassette G6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 1.0e-111, Sum P(2) = 1.0e-111
Identities = 152/316 (48%), Positives = 208/316 (65%)
Query: 64 DGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK 123
+G++ +K LL+ I+G+A GEI+A++G SG+GKST +DALA RIA+GSL+G+V ++G+
Sbjct: 98 EGIFSSKTKTLLNGITGEARDGEILAVLGASGSGKSTLIDALANRIAKGSLKGNVTLNGE 157
Query: 124 PVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL 183
+ + K +S+YVMQDD LFPMLTV ET MFAAE RLP S+S+ +K RV L+DQLGL
Sbjct: 158 VLNSKMQKAISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLSKSKKSLRVQALIDQLGL 217
Query: 184 RSATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKD 243
R+A +T IG+ DIIH P LLFLDEPTSGLDSTSA SV++ +K
Sbjct: 218 RNAANTVIGDEGHRGISGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSALSVIKVLKR 277
Query: 244 IARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDGENS 303
IA++GS+V+MT+HQPSYR+ LLDR++ L+RG+ V+ GSP LP A FG +P+ EN
Sbjct: 278 IAQSGSMVIMTLHQPSYRLLRLLDRLLFLSRGQTVFSGSPAMLPRFFAEFGHPIPEHENR 337
Query: 304 LEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPRTPASRS-KHAISLRSQ 362
E+ LD+I+E + S G LV + + G + +A PR+ S K AIS
Sbjct: 338 TEFALDLIRELEGSAGGTRSLVEFNK-GFRQRKAE-------PRSQTGLSLKEAISA--- 386
Query: 363 AFSFSTGNMTPGANST 378
S S G + GA +T
Sbjct: 387 --SISKGKLVSGATTT 400
|
|
| TAIR|locus:2049806 ABCG2 "ATP-binding cassette G2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 688 (247.2 bits), Expect = 3.4e-111, Sum P(2) = 3.4e-111
Identities = 161/342 (47%), Positives = 213/342 (62%)
Query: 48 LEFKNLSYSIMKKQKK------------DGVWITKEAYLLHDISGQAIRGEIMAIMGPSG 95
L F +L+YS+ K QKK D TK LL+ ISG+A GE+MA++G SG
Sbjct: 98 LSFTDLTYSV-KIQKKFNPLACCRRSGNDSSVNTK--ILLNGISGEAREGEMMAVLGASG 154
Query: 96 AGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMF 155
+GKST +DALA RIA+ SL GS+ ++G+ + +S K++S+YVMQDD LFPMLTV ET MF
Sbjct: 155 SGKSTLIDALANRIAKDSLRGSITLNGEVLESSMQKVISAYVMQDDLLFPMLTVEETLMF 214
Query: 156 AAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNXXXXXXXXXXXXXXXXXXDIIH 215
+AE RLP S+S+ +KK RV L+DQLGLRSA T IG+ DIIH
Sbjct: 215 SAEFRLPRSLSKKKKKARVQALIDQLGLRSAAKTVIGDEGHRGVSGGERRRVSIGNDIIH 274
Query: 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275
P +LFLDEPTSGLDSTSAY V++ ++ IA++GSIV+M+IHQPSYRI LLD++I L++G
Sbjct: 275 DPIILFLDEPTSGLDSTSAYMVIKVLQRIAQSGSIVIMSIHQPSYRIMGLLDQLIFLSKG 334
Query: 276 RLVYMGSPVALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPD 335
VY GSP LP + F +P+ EN E+ LD+I+E + ST G PLV + + +
Sbjct: 335 NTVYSGSPTHLPQFFSEFKHPIPENENKTEFALDLIRELEYSTEGTKPLVEFHKQW-RAK 393
Query: 336 QAARTPFPKIPRTPASRSKHAISLRSQAFSFSTGNMTPGANS 377
QA T S K AI+ S S G + GA +
Sbjct: 394 QAPSYNNNNKRNTNVSSLKEAITA-----SISRGKLVSGATN 430
|
|
| TAIR|locus:2083946 ABCG20 "ATP-binding cassette G20" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 677 (243.4 bits), Expect = 2.4e-108, Sum P(2) = 2.4e-108
Identities = 159/342 (46%), Positives = 215/342 (62%)
Query: 48 LEFKNLSYSI-MKKQKK----------DGVWITKEA-YLLHDISGQAIRGEIMAIMGPSG 95
L FK+L+YS+ +KK+ K DG + LL+ ISG+A GE+MA++G SG
Sbjct: 88 LSFKDLTYSVKIKKKFKPFPCCGNSPFDGNDMEMNTKVLLNGISGEAREGEMMAVLGASG 147
Query: 96 AGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMF 155
+GKST +DALA RI++ SL G + ++G+ + +S K++S+YVMQDD LFPMLTV ET MF
Sbjct: 148 SGKSTLIDALANRISKESLRGDITLNGEVLESSLHKVISAYVMQDDLLFPMLTVEETLMF 207
Query: 156 AAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNXXXXXXXXXXXXXXXXXXDIIH 215
+AE RLP S+S+ +KK RV L+DQLGLR+A T IG+ DIIH
Sbjct: 208 SAEFRLPSSLSKKKKKARVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGTDIIH 267
Query: 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275
P +LFLDEPTSGLDSTSAY VV+ ++ IA++GSIV+M+IHQPSYRI LLD++I L+RG
Sbjct: 268 DPIILFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDKLIFLSRG 327
Query: 276 RLVYMGSPVALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPD 335
VY GSP LP + FG +P+ EN E+ LD+I+E ++S G LV + +
Sbjct: 328 NTVYSGSPTHLPQFFSEFGHPIPENENKPEFALDLIRELEDSPEGTKSLVEFHKQW---- 383
Query: 336 QAARTPFPKIPRTPASRSKHAISLRSQAFSFSTGNMTPGANS 377
+A +T T S K AIS S S G + GA +
Sbjct: 384 RAKQTSSQSRRNTNVSL-KDAISA-----SISRGKLVSGATN 419
|
|
| TAIR|locus:2097218 ABCG18 "ATP-binding cassette G18" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 691 (248.3 bits), Expect = 3.1e-106, Sum P(2) = 3.1e-106
Identities = 159/334 (47%), Positives = 221/334 (66%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAY---LLHDISGQAIRGEIMAIMGPSGAGKSTFLDA 104
L F NLSY+++ +++ D K A LL DI+G+A GEI+A++G SGAGKST +DA
Sbjct: 63 LSFNNLSYNVVLRRRFD-FSRRKTASVKTLLDDITGEARDGEILAVLGGSGAGKSTLIDA 121
Query: 105 LAGRIAQGSLEGSVRIDGKPVTTS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP 163
LAGR+A+ SL+G+V ++G+ V S +K++S+YVMQDD LFPMLTV ET MFA+E RLP
Sbjct: 122 LAGRVAEDSLKGTVTLNGEKVLQSRLLKVISAYVMQDDLLFPMLTVKETLMFASEFRLPR 181
Query: 164 SISRDEKKKRVYELLDQLGLRSATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLD 223
S+ + +K +RV L+DQLGLR+A T IG+ DIIH P LLFLD
Sbjct: 182 SLPKSKKMERVETLIDQLGLRNAADTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLD 241
Query: 224 EPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
EPTSGLDST+A+ VV+ +K IA++GS+V+M+IHQPS RI LLDR+I+L+ G+ V+ GSP
Sbjct: 242 EPTSGLDSTNAFMVVQVLKRIAQSGSVVIMSIHQPSARIIGLLDRLIILSHGKSVFNGSP 301
Query: 284 VALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFP 343
V+LP+ + FGR +P+ EN E+ LDVI+E + S+ G LV + + +Q AR
Sbjct: 302 VSLPSFFSSFGRPIPEKENITEFALDVIRELEGSSEGTRDLVEFNEKW-QQNQTARA--- 357
Query: 344 KIPRTPASRSKHAISLRSQ-AFSFSTGNMTPGAN 376
T SR +SL+ A S S G + G++
Sbjct: 358 ----TTQSR----VSLKEAIAASVSRGKLVSGSS 383
|
|
| TAIR|locus:2097208 ABCG17 "ATP-binding cassette G17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 670 (240.9 bits), Expect = 1.3e-105, Sum P(2) = 1.3e-105
Identities = 140/286 (48%), Positives = 197/286 (68%)
Query: 48 LEFKNLSYSIMKKQK---KDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDA 104
L F +L+Y++ +Q+ + G K LL+ I+G+A GEI+AI+G SGAGKST +DA
Sbjct: 22 LAFNDLTYNVTLQQRFGLRFGHSPAKIKTLLNGITGEAKEGEILAILGASGAGKSTLIDA 81
Query: 105 LAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS 164
LAG+IA+GSL+G+V ++G+ + + ++++S+YVMQ+D LFPMLTV ET MFAAE RLP S
Sbjct: 82 LAGQIAEGSLKGTVTLNGEALQSRLLRVISAYVMQEDLLFPMLTVEETLMFAAEFRLPRS 141
Query: 165 ISRDEKKKRVYELLDQLGLRSATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDE 224
+S+ +K+ RV L+DQLGL + +T IG+ DIIH P +LFLDE
Sbjct: 142 LSKSKKRNRVETLIDQLGLTTVKNTVIGDEGHRGVSGGERRRVSIGTDIIHDPIVLFLDE 201
Query: 225 PTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284
PTSGLDSTSA+ VV+ +K IAR+GSIV+M+IHQPS RI LDR+IVL+ G++V+ SP
Sbjct: 202 PTSGLDSTSAFMVVQVLKKIARSGSIVIMSIHQPSGRIMEFLDRVIVLSSGQIVFSDSPA 261
Query: 285 ALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRD 330
LP + FG +P+ EN E+ LD+IK+ + S G LV + R+
Sbjct: 262 TLPLFFSEFGSPIPEKENIAEFTLDLIKDLEGSPEGTRGLVEFNRN 307
|
|
| TAIR|locus:2100641 ABCG19 "ATP-binding cassette G19" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 700 (251.5 bits), Expect = 1.5e-104, Sum P(2) = 1.5e-104
Identities = 154/339 (45%), Positives = 218/339 (64%)
Query: 40 LKMIPGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKS 99
+K +P + L F NL Y + +++ LL D+SG+A G+I+A++G SGAGKS
Sbjct: 66 VKPVP-YVLNFNNLQYDVTLRRRFGFSRQNGVKTLLDDVSGEASDGDILAVLGASGAGKS 124
Query: 100 TFLDALAGRIAQGSLEGSVRIDGKPVTTS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAE 158
T +DALAGR+A+GSL GSV ++G+ V S +K++S+YVMQDD LFPMLTV ET MFA+E
Sbjct: 125 TLIDALAGRVAEGSLRGSVTLNGEKVLQSRLLKVISAYVMQDDLLFPMLTVKETLMFASE 184
Query: 159 VRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPS 218
RLP S+S+ +K +RV L+DQLGLR+A +T IG+ DIIH P
Sbjct: 185 FRLPRSLSKSKKMERVEALIDQLGLRNAANTVIGDEGHRGVSGGERRRVSIGIDIIHDPI 244
Query: 219 LLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
+LFLDEPTSGLDST+A+ VV+ +K IA++GSIV+M+IHQPS RI LLDR+I+L+RG+ V
Sbjct: 245 VLFLDEPTSGLDSTNAFMVVQVLKRIAQSGSIVIMSIHQPSARIVELLDRLIILSRGKSV 304
Query: 279 YMGSPVALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAA 338
+ GSP +LP + FGR +P+ EN E+ LD+++E + S G LV + K Q
Sbjct: 305 FNGSPASLPGFFSDFGRPIPEKENISEFALDLVRELEGSNEGTKALVDFNE---KWQQNK 361
Query: 339 RTPFPKIPRTPASRSKHAISLRSQA-FSFSTGNMTPGAN 376
+ P+T ++SL+ S S G + G++
Sbjct: 362 ISLIQSAPQTNKLDQDRSLSLKEAINASVSRGKLVSGSS 400
|
|
| TAIR|locus:2009640 ABCG10 "ATP-binding cassette G10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 444 (161.4 bits), Expect = 1.5e-74, Sum P(2) = 1.5e-74
Identities = 102/269 (37%), Positives = 150/269 (55%)
Query: 48 LEFKNLSYSIMKKQKKD----GVWITKEA-YLLHDISGQAIRGEIMAIMGPSGAGKSTFL 102
LE KNLSY I K G+ KE +L D+S A EI AI GPSGAGK+T L
Sbjct: 19 LETKNLSYRIGGNTPKFSNLCGLLSEKEEKVILKDVSCDARSAEITAIAGPSGAGKTTLL 78
Query: 103 DALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP 162
+ LAG+++ G + G V ++G+P+ + VS +V Q+D LFP LTV ET ++A +RL
Sbjct: 79 EILAGKVSHGKVSGQVLVNGRPMDGPEYRRVSGFVPQEDALFPFLTVQETLTYSALLRL- 137
Query: 163 PSISRDEKKKRVYELLDQLGLRSATHTYIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFL 222
R + +V L+ +LGL + IG +++H P+++ +
Sbjct: 138 -KTKRKDAAAKVKRLIQELGLEHVADSRIGQGSRSGISGGERRRVSIGVELVHDPNVILI 196
Query: 223 DEPTSGLDSTSAYSVVEKVKDIA-RTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
DEPTSGLDS SA VV +KD+ + G +++TIHQP +RI +DRI++L+ G +V G
Sbjct: 197 DEPTSGLDSASALQVVTLLKDMTIKQGKTIVLTIHQPGFRILEQIDRIVLLSNGMVVQNG 256
Query: 282 SPVALPAHLAGFGRTVPDGENSLEYLLDV 310
S +L + G +P N LEY +D+
Sbjct: 257 SVYSLHQKIKFSGHQIPRRVNVLEYAIDI 285
|
|
| TAIR|locus:2054142 ABCG5 "ATP-binding cassette G5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 410 (149.4 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
Identities = 92/244 (37%), Positives = 143/244 (58%)
Query: 70 KEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY 129
K ++L ++ +A EI+AI+GPSGAGKS+ L+ LA R+ + GSV ++ +PV +
Sbjct: 58 KVKHVLKGVTCRAKPWEILAIVGPSGAGKSSLLEILAARLIPQT--GSVYVNKRPVDRAN 115
Query: 130 MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHT 189
K +S YV Q D LFP+LTV ET +F+A++RL + DE + RV L+ +LGL +
Sbjct: 116 FKKISGYVTQKDTLFPLLTVEETLLFSAKLRL--KLPADELRSRVKSLVHELGLEAVATA 173
Query: 190 YIGNXXXXXXXXXXXXXXXXXXDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-G 248
+G+ ++IH P +L LDEPTSGLDSTSA +++ +K +A T G
Sbjct: 174 RVGDDSVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALLIIDMLKHMAETRG 233
Query: 249 SIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDGENSLEYLL 308
+++TIHQP +RI + +++LA G + GS L +L G P EN +E+ +
Sbjct: 234 RTIILTIHQPGFRIVKQFNSVLLLANGSTLKQGSVDQLGVYLRSNGLHPPLHENIVEFAI 293
Query: 309 DVIK 312
+ I+
Sbjct: 294 ESIE 297
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 820 | |||
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 6e-87 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-71 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-65 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-57 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-56 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-54 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-50 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 7e-45 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-42 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 7e-40 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-39 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-38 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 8e-38 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-36 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 7e-36 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-35 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 7e-35 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-34 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-34 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-33 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 1e-32 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-32 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-32 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-32 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 4e-32 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-32 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 6e-32 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 7e-32 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 7e-32 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-31 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-31 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 6e-31 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 8e-31 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-30 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-30 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-30 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-30 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-30 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 4e-30 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 5e-30 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-29 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-29 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-29 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-29 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-29 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-29 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-29 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 7e-29 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-28 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-28 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-28 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-28 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 5e-28 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 8e-28 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-27 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-27 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-27 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-27 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-27 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-27 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-27 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 6e-27 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 6e-27 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 8e-27 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-26 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-26 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-26 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-25 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 5e-25 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 7e-25 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-24 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-24 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-24 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-24 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 9e-24 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 9e-24 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-23 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-23 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-23 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-23 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-23 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-23 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-23 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-23 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 6e-23 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 8e-23 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-22 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-22 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-22 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-22 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 3e-22 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-22 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-22 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 4e-22 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-21 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-21 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-21 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-21 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-21 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-21 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-21 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-21 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-21 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 4e-21 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-21 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 5e-21 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 7e-21 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 8e-21 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 9e-21 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-20 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-20 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-20 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-20 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-20 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 4e-20 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 5e-20 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 8e-20 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-19 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-19 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-19 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-19 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-19 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-19 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-19 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-19 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-19 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-19 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-19 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 4e-19 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-19 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 6e-19 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 7e-19 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 9e-19 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 9e-19 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-18 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-18 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-18 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-18 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-18 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-18 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-18 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-18 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-18 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-18 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-18 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-18 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-18 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 5e-18 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 7e-18 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-17 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-17 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-17 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-17 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-17 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-17 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-17 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-17 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-17 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 5e-17 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 5e-17 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 6e-17 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 6e-17 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 6e-17 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 8e-17 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 9e-17 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-16 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-16 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-16 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-16 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-16 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-16 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-16 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-16 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 4e-16 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 5e-16 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-16 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 6e-16 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 6e-16 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 6e-16 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 8e-16 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 8e-16 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 8e-16 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 8e-16 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-15 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-15 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-15 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-15 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-15 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-15 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-15 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-15 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-15 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 4e-15 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 5e-15 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 6e-15 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 6e-15 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 8e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 9e-15 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 9e-15 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-14 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-14 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-14 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-14 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-14 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-14 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 3e-14 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-14 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 3e-14 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-14 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 4e-14 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 4e-14 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 4e-14 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 5e-14 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 7e-14 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 7e-14 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 8e-14 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-13 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-13 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-13 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-13 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-13 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-13 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-13 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-13 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 4e-13 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-13 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 4e-13 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 5e-13 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 6e-13 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 7e-13 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-13 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 9e-13 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-12 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-12 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-12 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-12 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-12 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-12 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-12 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-12 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-12 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-12 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-12 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 4e-12 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 4e-12 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 4e-12 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 5e-12 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 6e-12 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 7e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 8e-12 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 8e-12 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 8e-12 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-11 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-11 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-11 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-11 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-11 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-11 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-11 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-11 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-11 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-11 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 4e-11 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-11 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-11 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 5e-11 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-11 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-11 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 6e-11 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-10 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-10 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-10 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-10 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-10 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-10 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-10 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-10 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-10 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-10 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 3e-10 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-10 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 5e-10 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 6e-10 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 8e-10 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-09 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 1e-09 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-09 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-09 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-09 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-09 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-09 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-09 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 5e-09 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 5e-09 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 5e-09 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 6e-09 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-08 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-08 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-08 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-08 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 4e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 7e-08 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 7e-08 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 7e-08 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 8e-08 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-07 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-07 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-07 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-07 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-07 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-07 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 4e-07 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 7e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 8e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 8e-07 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-06 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-06 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-06 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 3e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-06 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 6e-06 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 1e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-05 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-05 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-05 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 2e-05 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 3e-05 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-05 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 4e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 6e-05 | |
| pfam13481 | 154 | pfam13481, AAA_25, AAA domain | 6e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 6e-05 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 7e-05 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 7e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 7e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 8e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 8e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 1e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 1e-04 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 2e-04 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-04 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 2e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 5e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 7e-04 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 7e-04 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 8e-04 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 8e-04 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 0.001 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 0.002 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 0.002 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.003 | |
| pfam13555 | 60 | pfam13555, AAA_29, P-loop containing region of AAA | 0.004 | |
| cd13125 | 409 | cd13125, MATE_like_10, Uncharacterized subfamily o | 0.004 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 288 bits (738), Expect = 6e-87
Identities = 108/249 (43%), Positives = 158/249 (63%), Gaps = 2/249 (0%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSL-EGSVRIDGKPVTTSYMKM 132
LL ++SG A GE++A+MG SGAGK+T ++ALA R +G GSV ++G P+ M+
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 133 VSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG 192
+S+YV QDD P LTV E MF A +R+P +++ EK++RV E+L LGLR +T IG
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 193 NEGR-RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIV 251
GR +G+SGGER+R++ +++ P LLF DEPTSGLDS AYSVV+ +K +A+ G +
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 252 LMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDGENSLEYLLDVI 311
+ TIHQPS + L D+II++A GR+ Y+GSP + G P+ N ++ + V+
Sbjct: 220 ICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVL 279
Query: 312 KEYDESTVG 320
S
Sbjct: 280 AVIPGSENE 288
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 232 bits (595), Expect = 1e-71
Identities = 95/234 (40%), Positives = 134/234 (57%), Gaps = 43/234 (18%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
L F+NL+ ++ LL ++SG+A GE+ AIMGPSGAGKST L+ALAG
Sbjct: 4 LSFRNLTVTVKSS------PSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAG 57
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISR 167
R + G V I+G+P+ + + YV QDD L P LTV ET MFAA++
Sbjct: 58 RRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL-------- 109
Query: 168 DEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTS 227
RG+SGGER+RVSI ++++ PSLLFLDEPTS
Sbjct: 110 -----------------------------RGLSGGERKRVSIALELVSNPSLLFLDEPTS 140
Query: 228 GLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
GLDS+SA V+ ++ +A TG ++ +IHQPS I L D++++L++GR++Y G
Sbjct: 141 GLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 2e-65
Identities = 95/223 (42%), Positives = 134/223 (60%), Gaps = 9/223 (4%)
Query: 60 KQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS-LEGSV 118
K K K A +L+D+S G++MAI+G SG+GK+T LDA++GR+ G G +
Sbjct: 12 KAKNWN----KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQI 67
Query: 119 RIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELL 178
+G+P + +YV QDD L P LTV ET + A +RLP S +KKRV
Sbjct: 68 LFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRV---- 123
Query: 179 DQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVV 238
+ + LR T IG +G+SGGERRRVSI + ++ P +L LDEPTSGLDS +A ++V
Sbjct: 124 EDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLV 183
Query: 239 EKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
+ +AR IV++TIHQP + L DRI++L+ G +VY G
Sbjct: 184 STLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 1e-57
Identities = 99/247 (40%), Positives = 155/247 (62%), Gaps = 1/247 (0%)
Query: 64 DGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK 123
D +E +L+ ++G A GEI+A++GPSG+GKST L+ALAGRI + G++ + +
Sbjct: 73 DETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNR 132
Query: 124 PVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL 183
T +K + +V QDD L+P LTV ET +F + +RLP S+++ EK ++ +LGL
Sbjct: 133 KPTKQILKR-TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGL 191
Query: 184 RSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKD 243
+T IGN RG+SGGER+RVSI +++ PSLL LDEPTSGLD+T+AY +V +
Sbjct: 192 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGS 251
Query: 244 IARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDGENS 303
+A+ G ++ ++HQPS R+ + D ++VL+ GR ++ G A+ G + N
Sbjct: 252 LAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNP 311
Query: 304 LEYLLDV 310
++LLD+
Sbjct: 312 ADFLLDL 318
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 2e-56
Identities = 84/273 (30%), Positives = 134/273 (49%), Gaps = 26/273 (9%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+E +NL+ K+ L +S + GEI ++GP+GAGK+T L LAG
Sbjct: 5 IEVRNLT-----KKYGGDKTA------LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAG 53
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSS--YVMQDDQLFPMLTVFETFMFAAEVRLPPSI 165
+ S G + + G V K+ YV Q+ L+P LTV E F A +
Sbjct: 54 LLKPTS--GEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK- 110
Query: 166 SRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEP 225
+E ++R+ ELL+ GL + + R +SGG ++R+SI + ++H P LL LDEP
Sbjct: 111 --EEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEP 163
Query: 226 TSGLDSTSAYSVVEKVKDIARTG-SIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284
TSGLD S + E ++++A+ G +L++ H + L DR+I+L G+++ G+P
Sbjct: 164 TSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPE 222
Query: 285 ALPAHLAGFGR-TVPDGENSLEYLLDVIKEYDE 316
L G G + L LL+ +K
Sbjct: 223 ELKEKFGGKGVIELEPERLELAELLEGLKLVKG 255
|
Length = 293 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 1e-54
Identities = 88/236 (37%), Positives = 130/236 (55%), Gaps = 49/236 (20%)
Query: 48 LEFKNLSYSI-MKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA 106
L +KNL+Y++ +K K+ LL++ISG G + A+MG SGAGK+T LD LA
Sbjct: 4 LTWKNLNYTVPVKGGKRQ---------LLNNISGYVKPGTLTALMGESGAGKTTLLDVLA 54
Query: 107 GRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSIS 166
GR G + G + I+G+P+ ++ + + YV Q D P LTV E F+A +R
Sbjct: 55 GRKTAGVITGEILINGRPLDKNFQR-STGYVEQQDVHSPNLTVREALRFSALLR------ 107
Query: 167 RDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPT 226
G+S +R+R++IG+++ KPS+LFLDEPT
Sbjct: 108 -------------------------------GLSVEQRKRLTIGVELAAKPSILFLDEPT 136
Query: 227 SGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR-GRLVYMG 281
SGLDS +AY++V +K +A +G +L TIHQPS I DR+++L R G+ VY G
Sbjct: 137 SGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 2e-50
Identities = 72/325 (22%), Positives = 125/325 (38%), Gaps = 26/325 (8%)
Query: 500 QELEDMEEKVLDEPDHGPKF--ANPWLREVAVLSWRTALNVIRTPELFLSREIVFAVMAL 557
++ + ++ W + L R+ L+V+R P L R I + A+
Sbjct: 314 NLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAI 373
Query: 558 ILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFFSSNDAVPTFIQERFIFIRETSHNAYRA 617
++ ++ N ++F + F + + F E +F+RET YR
Sbjct: 374 LIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRV 433
Query: 618 SSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSSLLNFWMILFASLITTNA---YVMLV 674
S+Y ++ + LP F I F +IT ++ L S +F LF + N + L+
Sbjct: 434 SAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLI 493
Query: 675 SALVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFK 734
S S V F L GFF+ IP Y++WL Y+S +Y E LL N++
Sbjct: 494 SCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW- 552
Query: 735 GKECYNGAPGDLSPGPLGEVKLSKLHNTTAALLRPDCTLIGEDIVYSMDIQIENIWFDIL 794
D+ T C GE I+ ++ + +++ D++
Sbjct: 553 ---------SDVDNIEC-------TSANTTG----PCPSSGEVILETLSFRNADLYLDLI 592
Query: 795 ILLAWGVLYRLFFYLVLRFYSKNVR 819
L+ +RL Y LR + R
Sbjct: 593 GLVILIFFFRLLAYFALRIRIRRKR 617
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 7e-45
Identities = 76/233 (32%), Positives = 112/233 (48%), Gaps = 27/233 (11%)
Query: 49 EFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108
E KNLS+S + L DIS +GE + I+GP+G+GKST L L G
Sbjct: 1 ELKNLSFS----------YPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50
Query: 109 IAQGSLEGSVRIDGKPVTTSYMKMVS---SYVMQ--DDQLFPMLTVFETFMFAAEVRLPP 163
+ G G V +DGK +T +K + V Q DDQ F TV E F E
Sbjct: 51 L--GPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFF-GPTVEEEVAFGLENL--- 104
Query: 164 SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLD 223
+ +E ++RV E L+ +GL +SGG+++RV+I + P +L LD
Sbjct: 105 GLPEEEIEERVEEALELVGLEGLRDRSPFT-----LSGGQKQRVAIAGVLAMDPDILLLD 159
Query: 224 EPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276
EPT+GLD ++E +K + G +++ H + L DR+IVL G+
Sbjct: 160 EPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDL-LLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 3e-42
Identities = 96/272 (35%), Positives = 160/272 (58%), Gaps = 20/272 (7%)
Query: 49 EFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108
++NL+Y + K KK+ + +L+++ G G + A+MG SGAGK+T L+ LA R
Sbjct: 761 HWRNLTYEV--KIKKE------KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAER 812
Query: 109 IAQGSLEGSVRI-DGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISR 167
+ G + G R+ +G+P+ +S+ + YV Q D P TV E+ F+A +R P S+S+
Sbjct: 813 VTTGVITGGDRLVNGRPLDSSFQR-SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSK 871
Query: 168 DEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKP-SLLFLDEPT 226
EK + V E++ L + S +G G G++ +R+R++IG++++ KP LLFLDEPT
Sbjct: 872 SEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPT 930
Query: 227 SGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG-RLVYMGSPVA 285
SGLDS +A+S+ + ++ +A G +L TIHQPS + DR+++L +G + VY G +
Sbjct: 931 SGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFG-DLG 989
Query: 286 LPAH--LAGF----GRTVPDGENSLEYLLDVI 311
+H + F P+ N E++L+VI
Sbjct: 990 ENSHTIINYFEKHGAPKCPEDANPAEWMLEVI 1021
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 7e-40
Identities = 68/215 (31%), Positives = 104/215 (48%), Gaps = 35/215 (16%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ-GSLEGSVRIDGKPV--TT 127
+ +L D SG GE++ ++G G+G ST L ALA R S+EG + +G P
Sbjct: 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78
Query: 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
YV ++D FP LTV ET FA +
Sbjct: 79 EKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------- 111
Query: 188 HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR- 246
GNE RG+SGGER+RVSI ++ + S+L D T GLDS++A +++ ++ +A
Sbjct: 112 ----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADV 167
Query: 247 TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
+ ++++Q S I L D+++VL GR +Y G
Sbjct: 168 LKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 1e-39
Identities = 97/296 (32%), Positives = 159/296 (53%), Gaps = 10/296 (3%)
Query: 3 NLGRMDTSKTLESLLDMDKSLAAKNNNNKDAVVAAAGLKMIPGHGLEFKNLSYSI----- 57
+L D + T E + + + N ++ AA G+ G L F L+ S
Sbjct: 816 SLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNY 875
Query: 58 ---MKKQKKD-GVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS 113
M + K+ GV + LL +++G G + A+MG SGAGK+T +D LAGR G
Sbjct: 876 FVDMPAEMKEQGVTEDR-LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 934
Query: 114 LEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKR 173
+EG +RI G P +S Y Q+D P +TV E+ +++A +RLP +S++EK
Sbjct: 935 IEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMF 994
Query: 174 VYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTS 233
V E+++ + L + +G G G+S +R+R++I ++++ PS++F+DEPTSGLD+ +
Sbjct: 995 VDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1054
Query: 234 AYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAH 289
A V+ V++ TG V+ TIHQPS I D ++++ RG V P+ +H
Sbjct: 1055 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSH 1110
|
Length = 1470 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 2e-38
Identities = 74/238 (31%), Positives = 120/238 (50%), Gaps = 27/238 (11%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+E KN+S K G + L D++ + GE +AI+GPSG+GKST L+ L G
Sbjct: 2 IELKNVS-----KIYGLGGEKVE---ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG 53
Query: 108 RIAQGSLEGSVRIDGKPVTT-SYMKMVS------SYVMQDDQLFPMLTVFETFMFAAEVR 160
+ + + G V I+GK +T S ++ +V Q+ L P LTV E +
Sbjct: 54 -LDKPT-SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA 111
Query: 161 LPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLL 220
S +K+ ELL+ LGL +E +SGG+++RV+I +I+ P ++
Sbjct: 112 ---GKSAGRRKRAAEELLEVLGLEDRLLKKKPSE----LSGGQQQRVAIARALINNPKII 164
Query: 221 FLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277
DEPT LDS +A V+E ++++ + G ++M H P + DR+I L G++
Sbjct: 165 LADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 8e-38
Identities = 77/228 (33%), Positives = 111/228 (48%), Gaps = 28/228 (12%)
Query: 64 DGVWIT-KEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSV 118
G+ T L D+S GE +A++GPSG GK+T L +AG LE G +
Sbjct: 4 KGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG------LERPDSGEI 57
Query: 119 RIDGKPVTTSYMKMVS----SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRV 174
IDG+ VT V QD LFP LTV E F ++R P + E + RV
Sbjct: 58 LIDGRDVTG---VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVP---KAEIRARV 111
Query: 175 YELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSA 234
ELL+ +GL + Y +SGG+++RV++ + +PSLL LDEP S LD+
Sbjct: 112 RELLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLR 166
Query: 235 YSVVEKVKDI-ARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
+ E++K++ G + H L DRI V+ GR+V +G
Sbjct: 167 EELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 2e-36
Identities = 70/238 (29%), Positives = 118/238 (49%), Gaps = 28/238 (11%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+E KNLS + + V L +S +GE +AI+GPSG+GKST L+ L G
Sbjct: 1 IELKNLSKT--YGGGGEKVQA------LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG 52
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVS-------SYVMQDDQLFPMLTVFETFMFAAEVR 160
S G VR+DG ++ K ++ +V Q L P LT E +
Sbjct: 53 LDRPTS--GEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA 110
Query: 161 LPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLL 220
+ + E+++R ELL+++GL + Y +SGG+++RV+I + + P ++
Sbjct: 111 ---GVPKKERRERAEELLERVGLGDRLNHYPSE-----LSGGQQQRVAIARALANDPKII 162
Query: 221 FLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277
DEPT LDS + V+E ++++ + G+ +++ H P + DRII L G++
Sbjct: 163 LADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 7e-36
Identities = 65/216 (30%), Positives = 110/216 (50%), Gaps = 29/216 (13%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT------SYMKMVSSYV 137
GEI ++GP+GAGK+T + ++G + S GSV DG+ +T + + + ++
Sbjct: 25 PGEIHGLIGPNGAGKTTLFNLISGFLRPTS--GSVLFDGEDITGLPPHEIARLGIGRTF- 81
Query: 138 MQDDQLFPMLTVFETFMFAAEVRLPPSI-------SRDEKKKRVYELLDQLGLRSATHTY 190
Q +LFP LTV E M AA+ R + E ++R ELL+++GL
Sbjct: 82 -QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP 140
Query: 191 IGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI 250
G +S G++RR+ I + P LL LDEP +GL+ + E ++++ G
Sbjct: 141 AGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGIT 195
Query: 251 VLMTIHQPSYRIQMLL---DRIIVLARGRLVYMGSP 283
VL+ H + +++ DR+ VL +GR++ G+P
Sbjct: 196 VLLVEH----DMDVVMSLADRVTVLDQGRVIAEGTP 227
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 5e-35
Identities = 84/295 (28%), Positives = 126/295 (42%), Gaps = 37/295 (12%)
Query: 69 TKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ--GSLEGSVRIDGKPVT 126
TK +L + G GE+ ++G G+G ST L +A +EG + DG
Sbjct: 71 TKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPE 130
Query: 127 --TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS----ISRDEKKKRVYEL-LD 179
+ + Y + D FP LTV ET FAA + P + +SR+E K + ++ +
Sbjct: 131 EIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMA 190
Query: 180 QLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVE 239
GL +T +GN+ RGVSGGER+RVSI + + D T GLDS +A +
Sbjct: 191 TYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIR 250
Query: 240 KVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVP 298
+K A + L+ I+Q S L D++IVL G +Y G + G P
Sbjct: 251 ALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCP 310
Query: 299 DGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFP----KIPRTP 349
D + + ++L + A R P K+PRTP
Sbjct: 311 DRQTTADFLTSLT-----------------------SPAERQIKPGYEKKVPRTP 342
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 131 bits (333), Expect = 7e-35
Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 14/205 (6%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS--YMKMVSSYVMQDD 141
+GEI ++G +GAGK+T L L G + S G+ I+G + T + Y Q D
Sbjct: 27 KGEIFGLLGHNGAGKTTTLKMLTGELRPTS--GTAYINGYSIRTDRKAARQSLGYCPQFD 84
Query: 142 QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201
LF LTV E F A ++ + + E K+ V LL LGL + +SG
Sbjct: 85 ALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRART-----LSG 136
Query: 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYR 261
G +R++S+ I +I PS+L LDEPTSGLD S ++ + + ++ R G +++T H
Sbjct: 137 GMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV-RKGRSIILTTHSMD-E 194
Query: 262 IQMLLDRIIVLARGRLVYMGSPVAL 286
+ L DRI +++ G+L +GSP L
Sbjct: 195 AEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 1e-34
Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 61/232 (26%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+E +NLS K+ K K A L DIS +GEI ++GP+GAGK+T + + G
Sbjct: 1 IEVRNLS----KRYGK------KTA--LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILG 48
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVS--SYVMQDDQLFPMLTVFETFMFAAEVRLPPSI 165
+ S G +++ GK + ++ Y+ ++ L+ LTV E
Sbjct: 49 LLKPDS--GEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKL---------- 96
Query: 166 SRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEP 225
SGG ++R+++ ++H P LL LDEP
Sbjct: 97 ----------------------------------SGGMKQRLALAQALLHDPELLILDEP 122
Query: 226 TSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277
TSGLD S E ++++ + G +L++ H + L DR+ +L GR+
Sbjct: 123 TSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 2e-34
Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 17/209 (8%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT------TS 128
L I+ GE + ++GPSGAGKST L + S G++R++G+ V+
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTS--GTIRVNGQDVSDLRGRAIP 74
Query: 129 YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATH 188
Y++ V QD +L P V+E FA EV P E +KRV L+ +GL
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVP---PREIRKRVPAALELVGLSHKHR 131
Query: 189 TYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG 248
+SGGE++RV+I I++ P++L DEPT LD + + ++ +K I + G
Sbjct: 132 AL-----PAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAG 186
Query: 249 SIVLMTIHQPSYRIQMLLDRIIVLARGRL 277
+ V++ H + R+I L RG+L
Sbjct: 187 TTVVVATHAKEL-VDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 3e-33
Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 36/246 (14%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+E +NLS+ L D+S + +GE + ++GP+G+GKST L L G
Sbjct: 4 IEAENLSFR-----YPGRKAA------LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG 52
Query: 108 RIAQGSLEGSVRIDGKPVT----TSYMKMVSSYVMQ--DDQLFPMLTVFETFMFAAEVRL 161
+ G V +DG + ++ V Q DDQLF TV + EV
Sbjct: 53 LLK--PTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF-GPTVED------EVAF 103
Query: 162 PP---SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPS 218
+ R+E ++RV E L+ +GL N SGG+++RV+I + P
Sbjct: 104 GLENLGLPREEIEERVAEALELVGLEELLDRPPFNL-----SGGQKQRVAIAGVLAMGPE 158
Query: 219 LLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTI-HQPSYRIQMLLDRIIVLARGRL 277
+L LDEPT+GLD ++E +K + G ++ + H + DR++VL G++
Sbjct: 159 ILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL-VLEYADRVVVLDDGKI 217
Query: 278 VYMGSP 283
+ G P
Sbjct: 218 LADGDP 223
|
Length = 235 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 1e-32
Identities = 59/212 (27%), Positives = 98/212 (46%), Gaps = 5/212 (2%)
Query: 525 REVAVLSWRTALNVIRTPEL-FLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIF 583
++ L R L R P L L R I +MAL+ ++F NL F
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLD--TSLGGLNRPGLLFF 58
Query: 584 AVCLVFFSSNDAV-PTFIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAI 642
++ FSS + P FI+ER + RE + Y S+YV++ +LV LP +Q + F I
Sbjct: 59 SILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLI 118
Query: 643 TKLLLKLH-SSLLNFWMILFASLITTNAYVMLVSALVPSYIAGYAVVIATTALFFLTCGF 701
++ L S F ++L + + + + ++AL PS+ + L GF
Sbjct: 119 VYFMVGLPVSRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSGF 178
Query: 702 FLKRGHIPPYWRWLHYISAIKYPFEALLTNEF 733
F+ +P + +W++Y++ + Y EAL NEF
Sbjct: 179 FIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 1e-32
Identities = 75/207 (36%), Positives = 108/207 (52%), Gaps = 16/207 (7%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
L DIS GE +A++GPSG GKST L +AG S G V +DG+PVT
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTS--GEVLVDGEPVTGPGPDR-- 75
Query: 135 SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNE 194
YV Q D L P LTV + E++ + + E ++R ELL+ +GL + Y
Sbjct: 76 GYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYP--- 129
Query: 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI-ARTGSIVLM 253
+SGG R+RV++ + P +L LDEP S LD+ + + E++ DI TG VL+
Sbjct: 130 --HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLL 187
Query: 254 TIHQPSYRIQMLLDRIIVLAR--GRLV 278
H + L DR++VL+ GR+V
Sbjct: 188 VTHDIDEAV-FLADRVVVLSARPGRIV 213
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 1e-32
Identities = 70/222 (31%), Positives = 105/222 (47%), Gaps = 29/222 (13%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
L + RGEI+AI+GPSG+GKST L + G + S G V IDG+ ++ +
Sbjct: 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS--GEVLIDGEDIS----GLSE 69
Query: 135 S----------YVMQDDQLFPMLTVFETFMFA--AEVRLPPSISRDEKKKRVYELLDQLG 182
+ + Q LF LTVFE F RL R+ V E L+ +G
Sbjct: 70 AELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIRE----IVLEKLEAVG 125
Query: 183 LRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVK 242
LR A Y +SGG ++RV++ + P LL DEPT+GLD ++ + + ++
Sbjct: 126 LRGAEDLYPAE-----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIR 180
Query: 243 DIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
+ + G +M H + DRI VL G++V G+P
Sbjct: 181 SLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTP 221
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-32
Identities = 78/251 (31%), Positives = 121/251 (48%), Gaps = 31/251 (12%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+E +NLS K +G K+A L D+S GE +A++GPSGAGKST L L G
Sbjct: 1 IEVENLS-----KTYPNG----KKA--LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG 49
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSS------YVMQDDQLFPMLTVFETFMFAAEVRL 161
+ GSV IDG + K + + Q L L+V E + R
Sbjct: 50 LVE--PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRR 107
Query: 162 PP--SISR---DEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHK 216
S+ E+K+R L+++GL + +SGG+++RV+I ++ +
Sbjct: 108 STWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQ-----LSGGQQQRVAIARALMQQ 162
Query: 217 PSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARG 275
P L+ DEP + LD S+ V++ +K I R G V++++HQ + DRI+ L G
Sbjct: 163 PKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL-AREYADRIVGLKDG 221
Query: 276 RLVYMGSPVAL 286
R+V+ G P L
Sbjct: 222 RIVFDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 4e-32
Identities = 64/211 (30%), Positives = 107/211 (50%), Gaps = 17/211 (8%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT------S 128
L D+S +GE + + GPSGAGKST L + G G + ++G ++
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTR--GKILVNGHDLSRLKGREIP 75
Query: 129 YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATH 188
+++ V QD +L P TV+E V E ++RV E+LD +GL+
Sbjct: 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKAR 132
Query: 189 TYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG 248
+ ++ +SGGE++RV+I I+++P++L DEPT LD ++ ++ ++I R G
Sbjct: 133 -ALPSQ----LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLG 187
Query: 249 SIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279
+ VLM H + + R++ L GRLV
Sbjct: 188 TTVLMATHDLEL-VNRMRHRVLALEDGRLVR 217
|
Length = 223 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 4e-32
Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 71/228 (31%)
Query: 49 EFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108
E +NLS+ + L ++S GEI+A++GP+G+GKST L A+AG
Sbjct: 1 EIENLSFRYGGRT------------ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL 48
Query: 109 IAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRD 168
+ G + IDGK + + +
Sbjct: 49 LK--PTSGEILIDGKDIA-------------------------------------KLPLE 69
Query: 169 EKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSG 228
E ++R+ + QL SGG+R+RV++ ++ P LL LDEPTSG
Sbjct: 70 ELRRRIG-YVPQL------------------SGGQRQRVALARALLLNPDLLLLDEPTSG 110
Query: 229 LDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276
LD S ++E ++++A G V++ H P ++ DR+IVL G+
Sbjct: 111 LDPASRERLLELLRELAEEGRTVIIVTHDPEL-AELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 6e-32
Identities = 72/231 (31%), Positives = 115/231 (49%), Gaps = 31/231 (13%)
Query: 51 KNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIA 110
+N+S+S K + +L D+S GEI+A+ G +GAGK+T LAG I
Sbjct: 3 ENISFSYKKGTE-----------ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK 51
Query: 111 QGSLEGSVRIDGKPVTTSYMKMVSSYVMQD--DQLFPMLTVFETFMFAAEVRLPPSISRD 168
+ S GS+ ++GKP+ + YVMQD QLF +V E E+ L D
Sbjct: 52 ESS--GSILLNGKPIKAKERRKSIGYVMQDVDYQLF-TDSVRE------ELLLGLKEL-D 101
Query: 169 EKKKRVYELLDQLGLRSATHTYIGNEGR-RGVSGGERRRVSIGIDIIHKPSLLFLDEPTS 227
++ +L L L Y E +SGG+++R++I ++ LL DEPTS
Sbjct: 102 AGNEQAETVLKDLDL------YALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTS 155
Query: 228 GLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
GLD + V E ++++A G V++ H + + + DR+++LA G +V
Sbjct: 156 GLDYKNMERVGELIRELAAQGKAVIVITHDYEF-LAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 7e-32
Identities = 70/271 (25%), Positives = 112/271 (41%), Gaps = 26/271 (9%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS------YMKMVSSYV 137
GE+ +GP+GAGK+T + L + S G+ R+ G V + +V Y
Sbjct: 18 EGEVFGFLGPNGAGKTTTIRMLTTLLRPTS--GTARVAGYDVVREPRKVRRSIGIVPQYA 75
Query: 138 MQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR 197
D+ L T E + + +DE ++R ELL+ L +
Sbjct: 76 SVDEDL----TGRENLEMMGRLY---GLPKDEAEERAEELLELFEL-----GEAADRPVG 123
Query: 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQ 257
SGG RRR+ I +IH+P +LFLDEPT+GLD + ++ + ++ + G +L+T H
Sbjct: 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHY 183
Query: 258 PSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDGENSLEYLLDVIKEYDES 317
L DRI ++ GR++ G+P L L G+ E+ + + E
Sbjct: 184 -MEEADKLCDRIAIIDHGRIIAEGTPEELKRRL---GKDTL--ESRPRDIQSLKVEVSML 237
Query: 318 TVGLGPLVLYQRDGIKPDQAARTPFPKIPRT 348
LG L + P T
Sbjct: 238 IAELGETGLGLLAVTVDSDRIKILVPDGDET 268
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 7e-32
Identities = 69/239 (28%), Positives = 101/239 (42%), Gaps = 71/239 (29%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
LE KN+S + +L+D+S GEI+A++GPSG+GKST L +AG
Sbjct: 1 LELKNVSKRY------------GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG 48
Query: 108 RIAQGSLE----GSVRIDGKPVTTSYMKMV-----SSYVMQDDQLFPMLTVFETFMFAAE 158
LE GS+ IDG+ +T ++ V QD LFP LTV E
Sbjct: 49 ------LEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL--- 99
Query: 159 VRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPS 218
G+SGG+++RV++ + P
Sbjct: 100 ---------------------------------------GLSGGQQQRVALARALAMDPD 120
Query: 219 LLFLDEPTSGLDSTSAYSVVEKVKDI-ARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276
+L LDEPTS LD + V +K + A+ G V++ H L DR++VL G+
Sbjct: 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDE-AARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 2e-31
Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 36/226 (15%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT--TSYMKM 132
L +S GEI+A++G +GAGK+T L + G + S GS+R DG+ +T + +
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRS--GSIRFDGRDITGLPPH-ER 72
Query: 133 VS---SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHT 189
YV + ++FP LTV E + A R +RVYEL +L R
Sbjct: 73 ARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARL--ERVYELFPRLKERR---- 126
Query: 190 YIGNEGRRG--VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKV----KD 243
+ +SGGE++ ++I ++ +P LL LDEP+ GL A +VE++ ++
Sbjct: 127 -----KQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL----APKIVEEIFEAIRE 177
Query: 244 IARTGSIVLMTIHQPSYRIQMLL---DRIIVLARGRLVYMGSPVAL 286
+ G +L+ + Q + L DR VL RGR+V G+ L
Sbjct: 178 LRDEGVTILL-VEQ---NARFALEIADRAYVLERGRVVLEGTAAEL 219
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 5e-31
Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 30/232 (12%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSVRIDGKPVT---T 127
L D++ GE + ++GPSG GKST L +AG LE G + IDG+ VT
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG------LEEPTSGEILIDGRDVTDLPP 72
Query: 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
+ V Q+ L+P +TV+E F ++R + + E KRV E+ LGL
Sbjct: 73 EKRGIA--MVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLL 127
Query: 188 HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI-AR 246
+ +SGG+R+RV++ ++ KP + LDEP S LD+ + ++K + R
Sbjct: 128 NRKP-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER 182
Query: 247 TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL---PAHL--AGF 293
G+ + H L DRI+V+ GR+ +G+P+ L PA+L AGF
Sbjct: 183 LGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLELYERPANLFVAGF 233
|
Length = 338 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 6e-31
Identities = 80/248 (32%), Positives = 120/248 (48%), Gaps = 35/248 (14%)
Query: 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDAL 105
LE +NLS+ K +L D+S +GEI I+GP+G+GKST L L
Sbjct: 1 MMLEVENLSFGYGGKP------------ILDDLSFSIPKGEITGILGPNGSGKSTLLKCL 48
Query: 106 AGRIAQGSLEGSVRIDGKPV-TTSYM---KMVSSYVMQDDQLFPMLTVFETFMFAAEVRL 161
AG + S G V +DGK + + S K ++ YV Q LTV+E + R
Sbjct: 49 AGLLKPKS--GEVLLDGKDIASLSPKELAKKLA-YVPQSPSAPFGLTVYELVLLG---RY 102
Query: 162 P-----PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHK 216
P S+++++ V E L+ LGL + +SGGER+RV I + +
Sbjct: 103 PHLGLFGRPSKEDEEI-VEEALELLGLEHLADRPVDE-----LSGGERQRVLIARALAQE 156
Query: 217 PSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARG 275
+L LDEPTS LD V+E ++D+ R G V+M +H + D +I+L G
Sbjct: 157 TPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAA-RYADHLILLKDG 215
Query: 276 RLVYMGSP 283
++V G+P
Sbjct: 216 KIVAQGTP 223
|
Length = 258 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 8e-31
Identities = 61/210 (29%), Positives = 112/210 (53%), Gaps = 11/210 (5%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT-SYMKMV 133
L ++S + RG+ I+GP+G+GKS L+ +AG I S G + ++GK +T K
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS--GKILLNGKDITNLPPEKRD 72
Query: 134 SSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGN 193
SYV Q+ LFP +TV++ + + R + + E +++V E+ + LG+ +
Sbjct: 73 ISYVPQNYALFPHMTVYKNIAYGLKKRK---VDKKEIERKVLEIAEMLGIDHLLNRKPET 129
Query: 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLM 253
+SGGE++RV+I ++ P +L LDEP S LD + + E++K I + + ++
Sbjct: 130 -----LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVL 184
Query: 254 TIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
+ L D++ ++ G+L+ +G P
Sbjct: 185 HVTHDFEEAWALADKVAIMLNGKLIQVGKP 214
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 1e-30
Identities = 69/243 (28%), Positives = 108/243 (44%), Gaps = 25/243 (10%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
LE KNLS S L D+S +GE + ++G SG+GKST A+ G
Sbjct: 2 LEVKNLSVSFPTGGGSV--------KALDDVSFSIKKGETLGLVGESGSGKSTLARAILG 53
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVS------SYVMQDDQ--LFPMLTVFETFMFAAEV 159
+ S GS+ DGK + ++ V QD L P +T+ E +
Sbjct: 54 LLKPTS--GSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRI 111
Query: 160 RLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSL 219
S ++ +K+ V LL +GL + N +SGG+R+RV+I + P L
Sbjct: 112 HGKLS-KKEARKEAVLLLLVGVGLPEE----VLNRYPHELSGGQRQRVAIARALALNPKL 166
Query: 220 LFLDEPTSGLDSTSAYSVVEKVKDI-ARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
L DEPTS LD + +++ +K + G +L H + + DR+ V+ G++V
Sbjct: 167 LIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGV-VAKIADRVAVMYAGKIV 225
Query: 279 YMG 281
G
Sbjct: 226 EEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 2e-30
Identities = 71/202 (35%), Positives = 104/202 (51%), Gaps = 14/202 (6%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
L DI+ +GE +AI+GPSG GKST L +AG S G V +DG+PVT +
Sbjct: 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTS--GEVLLDGRPVTGPGPDI-- 74
Query: 135 SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNE 194
YV Q+D L P LTV + E+R S+ E ++R ELL+ +GL Y
Sbjct: 75 GYVFQEDALLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDKYPHQ- 130
Query: 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI-ARTGSIVLM 253
+SGG R+RV+I + +P LL LDEP LD+ + + +++ + T VL+
Sbjct: 131 ----LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLL 186
Query: 254 TIHQPSYRIQMLLDRIIVLARG 275
H + L DR++VL+
Sbjct: 187 VTHDVDEAV-YLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-30
Identities = 73/240 (30%), Positives = 118/240 (49%), Gaps = 26/240 (10%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+E +NL+ S + +L DIS +GEI A++GP+GAGKST L A+ G
Sbjct: 5 IEVENLTVSYGNRP------------VLEDISLSVEKGEITALIGPNGAGKSTLLKAILG 52
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQD---DQLFPMLTVFETFMFAAEVRLPPS 164
+ G ++I GKPV ++ YV Q D+ FP+ TV + + +
Sbjct: 53 LLKP--SSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPI-TVKDVVLLGRYGKKGWF 109
Query: 165 ISRDEK-KKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLD 223
++K K++V E L+++G+ IG +SGG+++RV + + P LL LD
Sbjct: 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLD 164
Query: 224 EPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
EP +G+D + + +K++ + G VLM H + DR+I L R L+ G P
Sbjct: 165 EPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMA-YFDRVICLNR-HLIASGPP 222
|
Length = 254 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-30
Identities = 77/222 (34%), Positives = 112/222 (50%), Gaps = 22/222 (9%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT------S 128
L + RGEI+AI+G SG+GKST L + G + G + IDG+ +
Sbjct: 24 LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDK--GEILIDGEDIPQLSEEELY 81
Query: 129 YMKMVSSYVMQDDQLFPMLTVFE--TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA 186
++ + Q LF LTVFE F +LP S+ R+ V L+ +GLR A
Sbjct: 82 EIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRE----LVLMKLELVGLRGA 137
Query: 187 THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246
+E +SGG R+RV++ I P LLFLDEPTSGLD SA + E ++++
Sbjct: 138 AADLYPSE----LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELND 193
Query: 247 T-GSIVLMTIHQ-PSYRIQMLLDRIIVLARGRLVYMGSPVAL 286
G V+M H S + + DR+ VLA G+++ G+P L
Sbjct: 194 ALGLTVIMVTHDLDS--LLTIADRVAVLADGKVIAEGTPEEL 233
|
Length = 263 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 3e-30
Identities = 85/247 (34%), Positives = 126/247 (51%), Gaps = 35/247 (14%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+E +N+S K G T L D+S + +GEI I+G SGAGKST L
Sbjct: 2 IELENVS-------KTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLL----- 49
Query: 108 RIAQGSLE----GSVRIDGKPVTT-SYMKMVS-----SYVMQDDQLFPMLTVFETFMFAA 157
R+ LE GSV +DG+ +T S ++ + Q L TVFE F
Sbjct: 50 RLINL-LERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPL 108
Query: 158 EVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKP 217
E+ + + E K+RV ELL+ +GL Y +SGG+++RV+I + + P
Sbjct: 109 ELA---GVPKAEIKQRVAELLELVGLSDKADRYPAQ-----LSGGQKQRVAIARALANNP 160
Query: 218 SLLFLDEPTSGLDSTSAYSVVEKVKDIART-G-SIVLMTIHQPSYRIQMLLDRIIVLARG 275
+L DE TS LD + S++E +KDI R G +IVL+T H+ ++ + DR+ VL +G
Sbjct: 161 KILLCDEATSALDPETTQSILELLKDINRELGLTIVLIT-HEMEV-VKRICDRVAVLDQG 218
Query: 276 RLVYMGS 282
RLV G+
Sbjct: 219 RLVEEGT 225
|
Length = 339 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 4e-30
Identities = 72/251 (28%), Positives = 120/251 (47%), Gaps = 27/251 (10%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
L +NLS L+++S + RGE + I+G SG+GKST LAG
Sbjct: 4 LSVRNLS----IVYGGGKFAFH----ALNNVSLEIERGETLGIVGESGSGKSTLARLLAG 55
Query: 108 RIAQGSLEGSVRIDGKPVT-----TSYMKMVSSYVMQDDQ--LFPMLTVFETFMFAAEVR 160
+ + S GS+ +DGKP+ ++ + V V QD L P TV
Sbjct: 56 -LEKPS-SGSILLDGKPLAPKKRAKAFYRPVQ-MVFQDPYSSLNPRRTVGRILSEPLRP- 111
Query: 161 LPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLL 220
+ ++R+ ELLDQ+GL + +E +SGG+R+R++I +I +P LL
Sbjct: 112 ----HGLSKSQQRIAELLDQVGLPPSFLDRRPHE----LSGGQRQRIAIARALIPEPKLL 163
Query: 221 FLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280
LDEPTS LD + ++ + ++ + + + I ++ + DRI V+ G++V +
Sbjct: 164 ILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI 223
Query: 281 GSPVALPAHLA 291
G L +H +
Sbjct: 224 GPTEELLSHPS 234
|
Length = 252 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 5e-30
Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 22/223 (9%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT--TSY--M 130
L +S + RGEI+A++G +GAGK+T L + G G + DG+ +T +
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMG--LVRPRSGRIIFDGEDITGLPPHERA 76
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY 190
++ +YV + ++FP LTV E + A R +++ + VYEL +L R
Sbjct: 77 RLGIAYVPEGRRIFPRLTVEENLLLGAYAR-RDKEAQERDLEEVYELFPRLKER------ 129
Query: 191 IGNEGRRG--VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG 248
+R +SGGE++ ++I ++ +P LL LDEP+ GL + E +K++ + G
Sbjct: 130 ---RNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEG 186
Query: 249 --SIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAH 289
+I+L + Q + + DR VL GR+V G+ L A
Sbjct: 187 GMTILL--VEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227
|
Length = 237 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 1e-29
Identities = 67/217 (30%), Positives = 108/217 (49%), Gaps = 33/217 (15%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSVRIDGKPVTTS-- 128
L I +GE++ I+GPSG+GKST L + LE G++ IDG +T
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINL------LEEPDSGTIIIDGLKLTDDKK 69
Query: 129 -------YMKMVSSYVMQDDQLFPMLTVFETFMFA-AEVRLPPSISRDEKKKRVYELLDQ 180
+ M V Q LFP LTV E A +V+ +S+ E ++R ELL++
Sbjct: 70 NINELRQKVGM----VFQQFNLFPHLTVLENITLAPIKVK---GMSKAEAEERALELLEK 122
Query: 181 LGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240
+GL Y +SGG+++RV+I + P ++ DEPTS LD V++
Sbjct: 123 VGLADKADAYPAQ-----LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDV 177
Query: 241 VKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277
+KD+A G +++ H+ + + + DR+I + GR+
Sbjct: 178 MKDLAEEGMTMVVVTHEMGF-AREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 1e-29
Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 20/213 (9%)
Query: 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT--TSYMKMVS 134
+S + RGEI ++GP+GAGK+T + L + S G + G V ++
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS--GRATVAGHDVVREPREVRRRI 75
Query: 135 SYVMQDDQLFPMLTVFET-FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGN 193
V QD + LT +E ++ A +P E+++R+ ELLD +GL A +
Sbjct: 76 GIVFQDLSVDDELTGWENLYIHARLYGVP----GAERRERIDELLDFVGLLEAADRLVKT 131
Query: 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVL 252
SGG RRR+ I ++H+P +LFLDEPT GLD + V E ++ + G +L
Sbjct: 132 -----YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTIL 186
Query: 253 MTIHQPSY--RIQMLLDRIIVLARGRLVYMGSP 283
+T H Y + L DR+ ++ GR++ G+P
Sbjct: 187 LTTH---YMEEAEQLCDRVAIIDHGRIIAEGTP 216
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 1e-29
Identities = 72/212 (33%), Positives = 115/212 (54%), Gaps = 20/212 (9%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG-RIAQGSLEGSVRIDGKPVT-TSYMKM 132
L DI+ + GEI+ + GPSG+GK+T L + G R Q EGS+++ G+ + S ++
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKEL 77
Query: 133 VS-----SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
V Y+ Q L LT + A E L P++S E ++R +L+ +GL
Sbjct: 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALE--LQPNLSYQEARERARAMLEAVGLGDHL 135
Query: 188 HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR- 246
Y N +SGG+++RV+I ++H+P L+ DEPT+ LDS S VVE ++ +AR
Sbjct: 136 DYYPHN-----LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190
Query: 247 TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
G +L+ H RI + DRI+ + G+L+
Sbjct: 191 QGCTILIVTHDN--RILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-29
Identities = 76/235 (32%), Positives = 112/235 (47%), Gaps = 28/235 (11%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+EF N+S K GV LHD+S +GE + + GPSGAGK+T L L G
Sbjct: 2 IEFHNVS-----KAYPGGVAA------LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYG 50
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSSY------VMQDDQLFPMLTVFETFMFAAEVRL 161
A G VRI G+ V + + V QD +L P TV+E EVR
Sbjct: 51 --ALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR- 107
Query: 162 PPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLF 221
E ++RV L Q+GL + +SGGE++RV+I I++ P LL
Sbjct: 108 --GKKEREIQRRVGAALRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIVNSPPLLL 160
Query: 222 LDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276
DEPT LD + +++ +K + + G+ V++ H S + + R+I+L GR
Sbjct: 161 ADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSL-VDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 2e-29
Identities = 65/226 (28%), Positives = 112/226 (49%), Gaps = 28/226 (12%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYM---- 130
++D+S + GEI+ ++GP+GAGK+T + + G S G+V G+ +T
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSS--GTVIFRGRDITGLPPHRIA 77
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSI---------SRDEKKKRVYELLDQL 181
++ + Q +LFP LTV E A RL S E ++R ELL+ +
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137
Query: 182 GLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKV 241
GL GN +S G++RR+ I + +P LL LDEP +GL+ + E +
Sbjct: 138 GLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELI 192
Query: 242 KDIARTGSI-VLMTIHQPSYRIQMLL---DRIIVLARGRLVYMGSP 283
+++ G + +L+ H +++++ DRI+VL G ++ G+P
Sbjct: 193 RELRDRGGVTILLIEH----DMKLVMGLADRIVVLNYGEVIAEGTP 234
|
Length = 250 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 3e-29
Identities = 79/274 (28%), Positives = 128/274 (46%), Gaps = 29/274 (10%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT-TSYMKMV 133
+ DIS +GE + ++GPSG GK+T L +AG S G + +DG+ +T K
Sbjct: 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS--GEILLDGEDITDVPPEKRP 78
Query: 134 SSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGN 193
V Q LFP +TV E F +++ + + E K RV E L+ +GL G
Sbjct: 79 IGMVFQSYALFPHMTVEENVAF--GLKVRKKLKKAEIKARVEEALELVGL-------EGF 129
Query: 194 EGRRG--VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSI 250
R+ +SGG+++RV++ ++ +P +L LDEP S LD+ + +++K++ R G
Sbjct: 130 ADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGIT 189
Query: 251 VLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL---PAHL--AGF-GRTVPDGENSL 304
+ H + M DRI V+ GR+ +G+P + PA A F G + N
Sbjct: 190 FVYVTHDQEEALAM-SDRIAVMNDGRIEQVGTPEEIYERPATRFVADFIGES-----NIF 243
Query: 305 EYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAA 338
E V++ +G L + I A
Sbjct: 244 E--GKVVERLGAIGGAVGGLGVVAPGAIPEGGAV 275
|
Length = 352 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 4e-29
Identities = 71/219 (32%), Positives = 105/219 (47%), Gaps = 19/219 (8%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG-----KPVTTSY 129
+ D+S +A GEI ++G +GAGK+T L +A + S G V IDG P
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS--GKVTIDGVDTVRDPSFVRR 75
Query: 130 MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHT 189
V L+ LT E + A + +SR E K R+ EL +L L
Sbjct: 76 KIGVLFGERG---LYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDR 129
Query: 190 YIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGS 249
+G S G +++V+I ++H PS+L LDEPTSGLD + + +K + G
Sbjct: 130 RVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGR 184
Query: 250 IVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPA 288
V+ + H ++ L DR+IVL +G +V GS AL A
Sbjct: 185 AVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 7e-29
Identities = 72/241 (29%), Positives = 122/241 (50%), Gaps = 36/241 (14%)
Query: 49 EFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108
E ++L+ S +L D+S + GE +AI+GP+GAGKST L A+ G
Sbjct: 1 EVEDLTVSYGGHP------------VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL 48
Query: 109 IAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQD---DQLFPMLTVFETFM--FAAEVRLPP 163
+ GS+R+ GKP+ K + YV Q D+ FP ++V + + L
Sbjct: 49 LKP--TSGSIRVFGKPLEKER-KRIG-YVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFR 103
Query: 164 SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLD 223
+S+ +K K V E L+++GL IG +SGG+++RV + ++ P LL LD
Sbjct: 104 RLSKADKAK-VDEALERVGLSELADRQIGE-----LSGGQQQRVLLARALVQDPDLLLLD 157
Query: 224 EPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL---DRIIVLARGRLVYM 280
EP +G+D + + E ++++ R G +L+ H + ++L DR+++L R +V
Sbjct: 158 EPFAGVDPKTQEDIYELLRELRREGMTILVVTHD----LGLVLEYFDRVLLLNR-TVVAS 212
Query: 281 G 281
G
Sbjct: 213 G 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-28
Identities = 76/251 (30%), Positives = 118/251 (47%), Gaps = 44/251 (17%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+E KN+S K D + L D+S +GEI I+G SGAGKST + + G
Sbjct: 2 IELKNVS-----KVFGDT---GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING 53
Query: 108 RIAQGSLE----GSVRIDGKPVTT----------SYMKMVSSYVMQDDQLFPMLTVFETF 153
LE GSV +DG +T + M+ Q L TVFE
Sbjct: 54 ------LERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIF----QHFNLLSSRTVFENV 103
Query: 154 MFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDI 213
E+ + + E ++RV ELL+ +GL Y +SGG+++RV I +
Sbjct: 104 ALPLEI---AGVPKAEIEERVLELLELVGLEDKADAYPAQ-----LSGGQKQRVGIARAL 155
Query: 214 IHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI-ARTG-SIVLMTIHQPSYRIQMLLDRIIV 271
+ P +L DE TS LD + S++ ++DI G +IVL+T H+ ++ + DR+ V
Sbjct: 156 ANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLIT-HEMEV-VKRICDRVAV 213
Query: 272 LARGRLVYMGS 282
+ +G +V G+
Sbjct: 214 MEKGEVVEEGT 224
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-28
Identities = 80/288 (27%), Positives = 134/288 (46%), Gaps = 43/288 (14%)
Query: 6 RMDTSKTLESLLDMDKSLAAKNNNNKDAVVAAAGLKMIPGHGLEFKNLSYSIMKKQKKDG 65
+ L + +S A + + A VA P + +NLS+ +
Sbjct: 284 AAAGEAAADKLFTLLESPVATPGSGEKAEVANE-----PPIEISLENLSFRYPDGKP--- 335
Query: 66 VWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125
L D++ G++ A++G SGAGKST L+ L G +A +G +R++G +
Sbjct: 336 --------ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT--QGEIRVNGIDL 385
Query: 126 T----TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQL 181
++ K +S +V Q+ LF T+ E + A P S +E + LDQ
Sbjct: 386 RDLSPEAWRKQIS-WVSQNPYLFAG-TIRENILLAR-----PDASDEE----IIAALDQA 434
Query: 182 GLRSAT------HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAY 235
GL T IG EG G+SGG+ +R+++ ++ SLL LDEPT+ LD+ +
Sbjct: 435 GLLEFVPKPDGLDTVIG-EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQ 493
Query: 236 SVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
+++ ++++A+ VL+ H+ DRI+VL GRLV G+
Sbjct: 494 IILQALQELAK-QKTVLVITHRLEDAADA--DRIVVLDNGRLVEQGTH 538
|
Length = 559 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 3e-28
Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 20/227 (8%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS------ 128
L +I+ GE +AI+GPSGAGKST L + + GS+ ++G +T
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV--EPSSGSILLEGTDITKLRGKKLR 75
Query: 129 YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP--PSISR---DEKKKRVYELLDQLGL 183
++ + Q L LTV E + P S+ +E K+R L+++GL
Sbjct: 76 KLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGL 135
Query: 184 RSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKD 243
+ +SGG+++RV+I + +P L+ DEP + LD ++ V++ +K
Sbjct: 136 ADKAYQRADQ-----LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKR 190
Query: 244 IART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAH 289
I + G V++ +HQ + DRI+ L G +V+ G+P L
Sbjct: 191 INKEDGITVIINLHQVDL-AKKYADRIVGLKAGEIVFDGAPSELDDE 236
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 3e-28
Identities = 66/204 (32%), Positives = 99/204 (48%), Gaps = 19/204 (9%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS--YMKMVSSYVMQDD 141
GEI+AI+GPSGAGKST L+ +AG S G + I+G T S + VS + Q++
Sbjct: 24 AGEIVAILGPSGAGKSTLLNLIAGFETPAS--GEILINGVDHTASPPAERPVSM-LFQEN 80
Query: 142 QLFPMLTVFETFMFAAEVRLPPSIS-RDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200
LF LTV + L P + E++++V Q+GL +S
Sbjct: 81 NLFAHLTVAQNIGLG----LSPGLKLNAEQREKVEAAAAQVGLAG-----FLKRLPGELS 131
Query: 201 GGERRRVSIGIDII-HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQP 258
GG+R+RV++ ++ +P LL LDEP S LD ++ V + +LM H P
Sbjct: 132 GGQRQRVALARCLVREQPILL-LDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP 190
Query: 259 SYRIQMLLDRIIVLARGRLVYMGS 282
+ DR++ L GR+ GS
Sbjct: 191 E-DAARIADRVVFLDNGRIAAQGS 213
|
Length = 231 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 5e-28
Identities = 74/254 (29%), Positives = 114/254 (44%), Gaps = 37/254 (14%)
Query: 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA 106
LE LS+ ++ L D+S G +A++GP+GAGKST L
Sbjct: 1 ALEVAGLSFRYGARRA------------LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLT 48
Query: 107 GRIAQGSLEGSVRIDGKPVTTSYMKMVSSY--VMQDDQLFPMLTVFETFMFAAEVRLPPS 164
EG + + G + + ++ V Q L L+V + + A +
Sbjct: 49 RLYVAQ--EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---G 103
Query: 165 ISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224
+SR E + R+ ELL +LGL + R ++GG RRRV I ++H+P+LL LDE
Sbjct: 104 LSRAEARARIAELLARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPALLLLDE 158
Query: 225 PTSGLDSTSAYSVVEKVKDIARTGSI-VLMTIH-----QPSYRIQMLLDRIIVLARGRLV 278
PT GLD S ++ V+ +AR + VL H + DR++VL RGR++
Sbjct: 159 PTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVLHRGRVL 211
Query: 279 YMGSPVALPAHLAG 292
G+ L G
Sbjct: 212 ADGAAAELRGATGG 225
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 8e-28
Identities = 68/233 (29%), Positives = 103/233 (44%), Gaps = 66/233 (28%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+EFKN+S+S + + +L D+S GE +AI+GPSG+GKST L L
Sbjct: 1 IEFKNVSFS----------YPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLL- 49
Query: 108 RIAQGSLEGSVRIDGKPVTT----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP 163
R+ + G + IDG + S K + +YV QD LF T+ E
Sbjct: 50 RLYDPT-SGEILIDGVDLRDLDLESLRKNI-AYVPQDPFLFSG-TIRE------------ 94
Query: 164 SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLD 223
+L SGG+R+R++I ++ P +L LD
Sbjct: 95 ------------NIL---------------------SGGQRQRIAIARALLRDPPILILD 121
Query: 224 EPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276
E TS LD + ++E ++ +A+ G V++ H+ S DRIIVL GR
Sbjct: 122 EATSALDPETEALILEALRALAK-GKTVIVIAHRLSTIRDA--DRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 1e-27
Identities = 66/246 (26%), Positives = 109/246 (44%), Gaps = 42/246 (17%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+E ++L+ K L DIS +GEI A++GPSG GKST L L
Sbjct: 1 IELRDLNVYYGDKH------------ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNR 48
Query: 108 RIAQGS---LEGSVRIDGKPVTTSYMKMVS-----SYVMQDDQLFPMLTVFETFMFAAEV 159
EG V +DGK + + ++ V Q FP ++++ V
Sbjct: 49 LNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPG-SIYDN------V 101
Query: 160 RLPPSI----SRDEKKKRVYELLDQLGLRSATHTYIGNE-GRRGVSGGERRRVSIGIDII 214
+ ++E +RV E L + L + + G+SGG+++R+ + +
Sbjct: 102 AYGLRLHGIKLKEELDERVEEALRKAAL----WDEVKDRLHALGLSGGQQQRLCLARALA 157
Query: 215 HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMT--IHQPSYRIQMLLDRIIVL 272
++P +L LDEPTS LD S + E + ++ + +IV++T + Q + DR L
Sbjct: 158 NEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQ----AARVADRTAFL 213
Query: 273 ARGRLV 278
GRLV
Sbjct: 214 LNGRLV 219
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-27
Identities = 77/249 (30%), Positives = 124/249 (49%), Gaps = 44/249 (17%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+E KNLS S K+ +L IS +GE++ I+GPSG+GKST L L G
Sbjct: 3 IEIKNLSKSFGDKE------------VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG 50
Query: 108 RIAQGSLE----GSVRIDGKPVTT--------SYMKMVSSYVMQDDQLFPMLTVFETFMF 155
LE GS+ +DG+ V + M V Q LFP LTV E
Sbjct: 51 ------LEEPDSGSITVDGEDVGDKKDILKLRRKVGM----VFQQFNLFPHLTVLENVTL 100
Query: 156 A-AEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII 214
A +V+ +S+ E +++ ELL+++GL Y +SGG+++RV+I +
Sbjct: 101 APVKVK---KLSKAEAREKALELLEKVGLADKADAYPAQ-----LSGGQQQRVAIARALA 152
Query: 215 HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274
P ++ DEPTS LD V++ +KD+A G +++ H+ + + + DR+I + +
Sbjct: 153 MDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQ 211
Query: 275 GRLVYMGSP 283
G+++ G P
Sbjct: 212 GKIIEEGPP 220
|
Length = 240 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-27
Identities = 73/247 (29%), Positives = 114/247 (46%), Gaps = 24/247 (9%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
L +NLS +K V E + D+S GE + ++G SG+GKST LAG
Sbjct: 281 LSVRNLS-KRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG 339
Query: 108 RIAQGSLEGSVRIDGKPVTTSY---------MKMVSSYVMQDDQLFPMLTVFETFMFAAE 158
+ S GS+ DG+ + + ++MV + L P +TV +
Sbjct: 340 LLPPSS--GSIIFDGQDLDLTGGELRRLRRRIQMV--FQDPYSSLNPRMTVGDILAEP-- 393
Query: 159 VRLPPSISRDEKKKRVYELLDQLGL-RSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKP 217
+R+ S E++ RV ELL+ +GL Y +SGG+R+RV+I + +P
Sbjct: 394 LRIHGGGSGAERRARVAELLELVGLPPEFLDRYP-----HELSGGQRQRVAIARALALEP 448
Query: 218 SLLFLDEPTSGLDSTSAYSVVEKVKDI-ARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276
LL LDEP S LD + V+ +KD+ G L H + ++ + DR+ V+ GR
Sbjct: 449 KLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYDGR 507
Query: 277 LVYMGSP 283
+V G
Sbjct: 508 IVEEGPT 514
|
Length = 539 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-27
Identities = 70/236 (29%), Positives = 114/236 (48%), Gaps = 27/236 (11%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
L+ +NL+ KK+ L +S G + ++GP+GAGK+T + LA
Sbjct: 1 LQLENLTKRYGKKR------------ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILAT 47
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKM--VSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSI 165
S G++RIDG+ V K+ Y+ Q+ ++P TV E + A ++ I
Sbjct: 48 LTPPSS--GTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GI 102
Query: 166 SRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEP 225
E K RV E+L+ + L IG +SGG RRRV I ++ PS+L +DEP
Sbjct: 103 PSKEVKARVDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEP 157
Query: 226 TSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
T+GLD + ++ ++L T H ++ L +++ VL +G+LV+ G
Sbjct: 158 TAGLDPEERIRFRNLLSELGEDRIVILST-HIVE-DVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 3e-27
Identities = 70/209 (33%), Positives = 100/209 (47%), Gaps = 29/209 (13%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSVRIDGKPVTTSYMKMVSS----- 135
E+ I G SGAGKST L +AG LE G++ ++G + S K+
Sbjct: 23 EEVTGIFGASGAGKSTLLRCIAG------LEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76
Query: 136 --YVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGN 193
V Q LFP L V E F + + E + V ELLD LGL + Y
Sbjct: 77 IGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPA- 130
Query: 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI-VL 252
+SGGE++RV++ + +P LL LDEP S LD ++ ++K I + +I V+
Sbjct: 131 ----QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVI 186
Query: 253 MTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
H S + L DRI+V+ GRL Y+G
Sbjct: 187 FVTHDLS-EAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 4e-27
Identities = 68/237 (28%), Positives = 102/237 (43%), Gaps = 61/237 (25%)
Query: 49 EFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108
E +NLS + +L D+S GEI+ I+GP+GAGKST L LAG
Sbjct: 1 EVENLSVGYGGRT------------VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL 48
Query: 109 IAQGSLEGSVRIDGKPVTTSYMKMVS---SYVMQDDQLFPMLTVFETFMFAAEVRLPPSI 165
+ S G + +DGK + + K ++ +YV Q
Sbjct: 49 LKPSS--GEILLDGKDLASLSPKELARKIAYVPQ-------------------------- 80
Query: 166 SRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEP 225
L+ LGL +SGGER+RV + + +P +L LDEP
Sbjct: 81 -----------ALELLGLAHLADRPFNE-----LSGGERQRVLLARALAQEPPILLLDEP 124
Query: 226 TSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
TS LD ++E ++ +AR G V+M +H + + DR+I+L GR+V G
Sbjct: 125 TSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARY-ADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 4e-27
Identities = 64/212 (30%), Positives = 108/212 (50%), Gaps = 15/212 (7%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT--SYMKM 132
L +S GE ++GPSG GK+T L +AG + G + +DGK +T + +
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAG--FETPTSGEILLDGKDITNLPPHKRP 73
Query: 133 VSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG 192
V++ V Q+ LFP LTVFE F ++ + + E K+RV E LD + L +
Sbjct: 74 VNT-VFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKP- 128
Query: 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIV 251
+SGG+++RV+I ++++P +L LDEP LD + ++K + + G
Sbjct: 129 ----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITF 184
Query: 252 LMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
+ H + M DRI V+ +G++ +G+P
Sbjct: 185 VFVTHDQEEALTM-SDRIAVMNKGKIQQIGTP 215
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 6e-27
Identities = 71/259 (27%), Positives = 118/259 (45%), Gaps = 47/259 (18%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+E KNLS K G L D++ + +GE++AI+GPSGAGKST L +L G
Sbjct: 4 IEVKNLS-----KTYPGGH------QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG 52
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSS----------YVMQDDQLFPMLTVFETFMFAA 157
+ G + +G + K+ + Q L P L+V E +
Sbjct: 53 LV--DPTSGEILFNGVQI----TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGR 106
Query: 158 EVRLP------PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGI 211
S+ E K + + L+++G+ + +SGG+++RV+I
Sbjct: 107 LGYTSTWRSLFGLFSK-EDKAQALDALERVGILDKAYQRAST-----LSGGQQQRVAIAR 160
Query: 212 DIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLL---D 267
++ +P ++ DEP + LD SA V++ +KDI + G V++ +HQ + + D
Sbjct: 161 ALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ----VDLAKKYAD 216
Query: 268 RIIVLARGRLVYMGSPVAL 286
RII L GR+V+ G L
Sbjct: 217 RIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 6e-27
Identities = 64/208 (30%), Positives = 116/208 (55%), Gaps = 14/208 (6%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS-YMKMV 133
L DIS +GEI ++GP+GAGK+T + + G I G V DGKP+ + ++
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDIAARNRI- 72
Query: 134 SSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGN 193
Y+ ++ L+P + V + ++ A+++ + ++E ++R+ E L++L L N
Sbjct: 73 -GYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYA-----N 123
Query: 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLM 253
+ +S G +++V +IH P LL LDEP SGLD + + + ++++AR G V++
Sbjct: 124 KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVIL 183
Query: 254 TIHQPSYRIQMLLDRIIVLARGRLVYMG 281
+ HQ ++ L DR+++L +GR V G
Sbjct: 184 STHQME-LVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 8e-27
Identities = 65/211 (30%), Positives = 115/211 (54%), Gaps = 16/211 (7%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYM 130
L ++S +A +G I+ +GP+GAGKST + + G + S GSV++ G+ V +
Sbjct: 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDS--GSVQVCGEDVLQNPK 71
Query: 131 KMVSS--YVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATH 188
++ + Y+ + + L+ + V E F A + + K+RV E+++ +GLR H
Sbjct: 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQH 128
Query: 189 TYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG 248
IG +S G R+RV + +IH P +L LDEPT+GLD + +K+I +
Sbjct: 129 KKIGQ-----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDK 183
Query: 249 SIVLMT-IHQPSYRIQMLLDRIIVLARGRLV 278
+I+L T I Q ++ + DR+I++ +G++V
Sbjct: 184 TIILSTHIMQ---EVEAICDRVIIINKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-26
Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 34/240 (14%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+EF+N+S+S ++ L ++S GE +AI+G G+GKST L LAG
Sbjct: 3 IEFRNVSFSYPNQEIPA----------LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAG 52
Query: 108 -RIAQGSLEGSVRIDGKPVTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP 163
GSV +DG + + ++ YV QD LF T+ + A P
Sbjct: 53 LYKPT---SGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLF-YGTLRDNITLGA-----P 103
Query: 164 SISRDEKKKRVYEL--LDQLGLRSATHTY---IGNEGRRGVSGGERRRVSIGIDIIHKPS 218
DE+ R EL + + + IG E RG+SGG+R+ V++ +++ P
Sbjct: 104 LAD-DERILRAAELAGVTDFVNKHP-NGLDLQIG-ERGRGLSGGQRQAVALARALLNDPP 160
Query: 219 LLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
+L LDEPTS +D S + E+++ + +++++T H+PS + L+DRIIV+ GR+V
Sbjct: 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIIT-HRPS--LLDLVDRIIVMDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 2e-26
Identities = 69/204 (33%), Positives = 103/204 (50%), Gaps = 21/204 (10%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS--YMKMVSSYVMQDD 141
+GEI AI+GPSG+GKST L+ +AG S G V I+G VT + + VS + Q++
Sbjct: 23 QGEITAIVGPSGSGKSTLLNLIAGFETPQS--GRVLINGVDVTAAPPADRPVSM-LFQEN 79
Query: 142 QLFPMLTVFETFMFAAEVRLPPSIS-RDEKKKRVYELLDQLGLRSATHTYIGNEGRR--G 198
LF LTV + L P + E ++ + L ++GL G E R
Sbjct: 80 NLFAHLTVEQNVGLG----LSPGLKLTAEDRQAIEVALARVGLA-------GLEKRLPGE 128
Query: 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQ 257
+SGGER+RV++ ++ +L LDEP + LD +++ V D+ T VLM HQ
Sbjct: 129 LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQ 188
Query: 258 PSYRIQMLLDRIIVLARGRLVYMG 281
P + L R++ L GR+ G
Sbjct: 189 PE-DAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 4e-26
Identities = 79/259 (30%), Positives = 124/259 (47%), Gaps = 33/259 (12%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
LE +NL+ + DG + + D+S + GEI+ I+G SG+GKST AL G
Sbjct: 6 LEVENLT----VEFATDGGRVP----AVRDVSFEVEPGEILGIVGESGSGKSTLALALMG 57
Query: 108 RIAQGSL--EGSVRIDGKPVTT-------SYMKMVSSYVMQD--DQLFPMLTVFETFMFA 156
+ +G G V +DG+ + + + QD L P++T+ +
Sbjct: 58 LLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQI--- 114
Query: 157 AEV-RLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRRGVSGGERRRVSIGIDII 214
E RL SR E +KR ELL+Q+GL ++ +SGG R+RV I + +
Sbjct: 115 REALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQ----LSGGMRQRVMIAMALA 170
Query: 215 HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI-VLMTIHQPSYRIQMLLDRIIVLA 273
KP LL DEPT+ LD T+ +++ +KD+ R + VL H + L DR++V+
Sbjct: 171 LKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMY 229
Query: 274 RGRLVYMGSPVAL---PAH 289
+G +V G + P H
Sbjct: 230 KGEIVETGPTEEILSNPQH 248
|
Length = 539 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 1e-25
Identities = 76/218 (34%), Positives = 114/218 (52%), Gaps = 19/218 (8%)
Query: 69 TKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK-PVTT 127
EA L IS +GEI+ +GP+GAGK+T L L+G + S G VR+ G P
Sbjct: 33 EVEA--LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTS--GEVRVAGLVPWKR 88
Query: 128 S--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEV-RLPPSISRDEKKKRVYELLDQLGLR 184
+++ + Q QL+ L V ++F A + LPP KKR+ EL + L L
Sbjct: 89 RKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPP----ARFKKRLDELSELLDLE 144
Query: 185 SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI 244
T + R +S G+R R I ++H+P +LFLDEPT GLD + ++ +K+
Sbjct: 145 ELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEY 199
Query: 245 AR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
R G+ VL+T H I+ L R++V+ +GRL+Y G
Sbjct: 200 NRERGTTVLLTSHY-MKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 5e-25
Identities = 65/209 (31%), Positives = 105/209 (50%), Gaps = 13/209 (6%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
+ +S GE+ ++GP+GAGK+T L LAG + + G +DG V +
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA--GFATVDGFDVVKEPAEARR 78
Query: 135 S--YVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG 192
+V L+ LT E + A + + DE R+ EL D+LG+ +G
Sbjct: 79 RLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVG 135
Query: 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVL 252
G S G R++V+I ++H P +L LDEPT+GLD + ++ E ++ + G +L
Sbjct: 136 -----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCIL 190
Query: 253 MTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
+ H ++ L DR++VL RGR+VY G
Sbjct: 191 FSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 7e-25
Identities = 64/209 (30%), Positives = 103/209 (49%), Gaps = 18/209 (8%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
L DIS +GEI +GP+GAGK+T + + G I S G + DGK + +
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS--GEITFDGKSYQKNIEALRR 73
Query: 135 SYVMQDDQ-LFPMLTVFETF-MFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG 192
+ + +P LT E + A + + KKR+ E+LD +GL+ + +
Sbjct: 74 IGALIEAPGFYPNLTARENLRLLARLLGIR--------KKRIDEVLDVVGLKDSAKKKVK 125
Query: 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVL 252
G S G ++R+ I + ++ P LL LDEPT+GLD + E + + G VL
Sbjct: 126 -----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180
Query: 253 MTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
++ H S IQ + DRI ++ +G+L+ G
Sbjct: 181 ISSHLLS-EIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 65/262 (24%), Positives = 130/262 (49%), Gaps = 25/262 (9%)
Query: 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDAL 105
LE + ++ S K+ + +IS + GEI ++GP+GAGK+T +
Sbjct: 1 MALEIEGVTKSFGDKK------------AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMI 48
Query: 106 AGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSI 165
G + EG + +G P++ +K Y+ ++ L+P +TV + + AE++ +
Sbjct: 49 LGLLEPT--EGEITWNGGPLSQE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GM 102
Query: 166 SRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEP 225
+ E +K++ L++L + I + +S G ++++ +IH+P LL LDEP
Sbjct: 103 PKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLILDEP 157
Query: 226 TSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285
SGLD + + + + ++ G+ ++ + H+ ++ L DR+++L +G+ V G+
Sbjct: 158 FSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVED 216
Query: 286 LPAHLAGFGRTVPDGENSLEYL 307
+ G R V + + SLE L
Sbjct: 217 IRRS-FGKKRLVIESDLSLEEL 237
|
Length = 300 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 70/246 (28%), Positives = 119/246 (48%), Gaps = 27/246 (10%)
Query: 64 DGVWITKE---AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRI 120
+ ++ E L D+S GE++ ++GPSG GK+T L+ +AG + GS+++
Sbjct: 7 SHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQL 64
Query: 121 DGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQ 180
+G+ + + V Q++ L P L V + F ++R I + ++++ +++L
Sbjct: 65 NGRRIEGPGAE--RGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLAL 119
Query: 181 LGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240
+GL A H YI +SGG R+RV I + +P LL LDEP LD+ + + E
Sbjct: 120 VGLEGAEHKYIWQ-----LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQEL 174
Query: 241 VKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLA--RGRLVYMGSPVALPAHLAGFGRTV 297
+ D+ + TG VL+ H + L R++VL+ GR+V F R
Sbjct: 175 LLDLWQETGKQVLLITHDIEEAL-FLATRLVVLSPGPGRVVE--------RLPLDFARRY 225
Query: 298 PDGENS 303
GE S
Sbjct: 226 AAGEPS 231
|
Length = 259 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 76/244 (31%), Positives = 123/244 (50%), Gaps = 27/244 (11%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFL---DA 104
+EFKN+S Q +LH+I +GE++ I+GPSG+GKST L +
Sbjct: 2 IEFKNVSKHFGPTQ------------VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINK 49
Query: 105 LAGRIAQGSL-EGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAA-EVRLP 162
L I G L ++++ V ++ + V Q LFP LT E MF VR
Sbjct: 50 LE-EITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR-- 106
Query: 163 PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFL 222
S++E +K+ ELL ++GL H Y +SGG+++RV+I + KP L+
Sbjct: 107 -GASKEEAEKQARELLAKVGLAERAHHYPSE-----LSGGQQQRVAIARALAVKPKLMLF 160
Query: 223 DEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
DEPTS LD + V++ ++D+A G +++ H+ + + + R+I + +GR+ G
Sbjct: 161 DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGF-AEKVASRLIFIDKGRIAEDGD 219
Query: 283 PVAL 286
P L
Sbjct: 220 PQVL 223
|
Length = 240 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 8e-24
Identities = 67/215 (31%), Positives = 113/215 (52%), Gaps = 14/215 (6%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT-SYMKMV 133
L ++ +GE ++++G SG GKST L+ ++G +AQ + G V ++GK +T +MV
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISG-LAQPT-SGGVILEGKQITEPGPDRMV 58
Query: 134 SSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGN 193
V Q+ L P LTV E A + R+ P +S+ E++ V E + +GL A G
Sbjct: 59 ---VFQNYSLLPWLTVRENIALAVD-RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQ 114
Query: 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVL 252
+SGG ++RV+I + +P +L LDEP LD+ + ++ E++ I VL
Sbjct: 115 -----LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVL 169
Query: 253 MTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALP 287
M H + +L DR+++L G +G + +P
Sbjct: 170 MVTHDVDEAL-LLSDRVVMLTNGPAANIGQILEVP 203
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 9e-24
Identities = 80/287 (27%), Positives = 140/287 (48%), Gaps = 35/287 (12%)
Query: 65 GVWITKEAYL--LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-SLEGSVRID 121
G+ + K+ L L D SG + ++GP +GK+T L ALAG++ + G + +
Sbjct: 169 GINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYN 228
Query: 122 GKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVR-------LPPSISRDEKKKRV 174
G + + S+Y+ Q+D ++TV ET F+A + L ++R EK +
Sbjct: 229 GYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGI 288
Query: 175 YE------------------------LLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIG 210
+ L LGL T +G+E RG+SGG+++RV+ G
Sbjct: 289 FPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTG 348
Query: 211 IDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRI 269
I+ LF+DE ++GLDS++ Y +V+ ++ I T + VLM++ QP+ L D I
Sbjct: 349 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDI 408
Query: 270 IVLARGRLVYMGSPVALPAHLAGFGRTVPDGENSLEYLLDVIKEYDE 316
I+L+ G++VY G + G P+ + + ++L +V + D+
Sbjct: 409 ILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQ 455
|
Length = 1470 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 9e-24
Identities = 69/223 (30%), Positives = 103/223 (46%), Gaps = 20/223 (8%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
L DIS GE++A++GPSGAGKST L +AG + G +R++G+ + V
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA--GRIRLNGRVLFDVSNLAVR 75
Query: 135 S----YVMQDDQLFPMLTVFETFMFAAEVRL--PPSISRDEKKKRVYELLDQLGLRSATH 188
+V Q LFP +TV + F +VR P + RV ELL + L
Sbjct: 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEI---RARVEELLRLVQLEGLAD 132
Query: 189 TYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKV--KDIAR 246
Y +SGG+R+RV++ + +P +L LDEP LD + + K R
Sbjct: 133 RYP-----AQLSGGQRQRVALARALAVEPKVLLLDEPFGALD-AKVRKELRRWLRKLHDR 186
Query: 247 TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAH 289
G + H L DR++VL +GR+ +G P + H
Sbjct: 187 LGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVYDH 228
|
Length = 345 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-23
Identities = 61/218 (27%), Positives = 101/218 (46%), Gaps = 10/218 (4%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT-TSYMKM 132
+L D+S + GE++A++G SG GK+T L A+AG + L G + I + +T K
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79
Query: 133 VSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG 192
+ + Q+ LFP L V + F + P E RV + L +GL A
Sbjct: 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE---RVADALKLVGLGDAAAHLPA 136
Query: 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI-ARTGSIV 251
+SGG ++R++I I +P +L LDEP S LD+ ++ E++ + +
Sbjct: 137 Q-----LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELT 191
Query: 252 LMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAH 289
++ + L D+ ++ GRL G P AL
Sbjct: 192 ILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-23
Identities = 65/213 (30%), Positives = 100/213 (46%), Gaps = 20/213 (9%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMV 133
+L + RGE +AI+GPSG+GKST L LAG + S G VR+ G+P+
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAG-LDDPS-SGEVRLLGQPLHKLDEDAR 82
Query: 134 SS-------YVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA 186
++ +V Q L P LT E E+R S + + LL+ +GL
Sbjct: 83 AALRARHVGFVFQSFHLIPNLTALENVALPLELR---GESSADSRAGAKALLEAVGLGKR 139
Query: 187 THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246
Y +SGGE++RV++ +P +LF DEPT LD + + + + + R
Sbjct: 140 LTHYPAQ-----LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR 194
Query: 247 T-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
G+ +++ H P + DR + L GRLV
Sbjct: 195 ERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLV 225
|
Length = 228 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 1e-23
Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 14/187 (7%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIA-QGSLEGSVRIDGKPVTT--SYM 130
LL +++ +GEI+ +MGPSG GKST L + G +A Q S G + ++ + + +
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY 190
+ + + QD LFP L+V + +FA LP ++ + ++ L++ GL A H
Sbjct: 77 RQI-GILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFHQD 131
Query: 191 IGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI 250
+SGG+R RV++ ++ +P L LDEP S LD + V R I
Sbjct: 132 PAT-----LSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGI 186
Query: 251 -VLMTIH 256
+ H
Sbjct: 187 PTVQVTH 193
|
Length = 213 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-23
Identities = 85/310 (27%), Positives = 138/310 (44%), Gaps = 54/310 (17%)
Query: 1 MANLGRMDTSKTLESLLDMDKSLAAK-----NNNNKDAVVAAAGLKMIPGHGLEFKNLSY 55
+A + + S ++ L K + G LE +N+S+
Sbjct: 295 LAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTAT----------TGQALELRNVSF 344
Query: 56 SIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE 115
+ + ++ L + + +GE +AI+G SG+GKST L LAG A +
Sbjct: 345 T----------YPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAG--AWDPQQ 392
Query: 116 GSVRIDGKPV---TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKK 172
GS+ ++G + ++ S + Q LF T+ + A P S DE+
Sbjct: 393 GSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLAN-----PDAS-DEE-- 443
Query: 173 RVYELLDQLGLR-------SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEP 225
++ L Q+GL +T++G EG R +SGGERRR+++ ++H L LDEP
Sbjct: 444 -LWAALQQVGLEKLLESAPDGLNTWLG-EGGRRLSGGERRRLALARALLHDAPLWLLDEP 501
Query: 226 TSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285
T GLD + V+ + + A G +LM H+ +M DRIIVL G+++ G+
Sbjct: 502 TEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRGLERM--DRIIVLDNGKIIEEGTHAE 558
Query: 286 LPAHLAGFGR 295
L LA GR
Sbjct: 559 L---LANNGR 565
|
Length = 573 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-23
Identities = 71/251 (28%), Positives = 121/251 (48%), Gaps = 31/251 (12%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+EF+N+S K+ G + D++ GE + ++GPSG+GK+T L +
Sbjct: 2 IEFENVS-------KRYG-----NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINR 49
Query: 108 RIAQGSLEGSVRIDGKPVTTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS 164
I S G + IDG+ ++ ++ YV+Q LFP LTV E ++
Sbjct: 50 LIEPTS--GEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---G 104
Query: 165 ISRDEKKKRVYELLDQLGLRSAT--HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFL 222
++ KKR ELLD +GL + Y +SGG+++RV + + P +L +
Sbjct: 105 WDKERIKKRADELLDLVGLDPSEYADRY-----PHELSGGQQQRVGVARALAADPPILLM 159
Query: 223 DEPTSGLDSTSAYSVVEKVKDIART--GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280
DEP LD + + E++K++ + +IV +T H ++ L DRI V+ G +V
Sbjct: 160 DEPFGALDPITRKQLQEEIKELQKELGKTIVFVT-HDIDEALK-LADRIAVMDAGEIVQY 217
Query: 281 GSPVALPAHLA 291
+P + A+ A
Sbjct: 218 DTPDEILANPA 228
|
Length = 309 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-23
Identities = 63/240 (26%), Positives = 113/240 (47%), Gaps = 36/240 (15%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS---LEGSVRIDGKPVTT--- 127
+ +S + +GEI+ I+G SG+GKS A+ G + + + + G + DGK + +
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 128 SYMKMVS----SYVMQD--DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQL 181
++ + + + QD L P++T+ + + S+ E K+R ELL+ +
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELV 138
Query: 182 GLRSAT-------HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSA 234
G+ H SGG R+RV I + + P LL DEPT+ LD T
Sbjct: 139 GIPDPERRLKSYPHEL---------SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQ 189
Query: 235 YSVVEKVKDIAR-TG-SIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL---PAH 289
+++ +K++ R G +++L+T H ++ DR+ V+ GR+V G + P H
Sbjct: 190 AQILDLLKELQREKGTALILIT-HDLGVVAEI-ADRVAVMYAGRIVEEGPVEEIFKNPKH 247
|
Length = 316 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.5 bits (249), Expect = 3e-23
Identities = 80/266 (30%), Positives = 113/266 (42%), Gaps = 73/266 (27%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
LE +NLS + + LL D+S GE++AI+GP+GAGKST L AL+G
Sbjct: 3 LEARNLSVRLGGRT------------LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSG 50
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE-----TFMF-AAEV-- 159
++ S G VR++G+P+ +L V +F F EV
Sbjct: 51 ELSPDS--GEVRLNGRPLAD----------WSPAELARRRAVLPQHSSLSFPFTVEEVVA 98
Query: 160 --RLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGR--RGVSGGERRRV-------- 207
R P +SR E V L Q+ L GR +SGGE++RV
Sbjct: 99 MGRAPHGLSRAEDDALVAAALAQVDL-------AHLAGRDYPQLSGGEQQRVQLARVLAQ 151
Query: 208 --SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQM 264
P L LDEPTS LD + V+ + +A G V++ +H
Sbjct: 152 LWEPD----GPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHD------- 200
Query: 265 LL-------DRIIVLARGRLVYMGSP 283
L DRI++L +GRLV G+P
Sbjct: 201 -LNLAARYADRIVLLHQGRLVADGTP 225
|
Length = 258 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 3e-23
Identities = 74/249 (29%), Positives = 115/249 (46%), Gaps = 38/249 (15%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+ +NLSYS+ ++ LL +S GE++AI+GP+GAGKST L AL+G
Sbjct: 2 IRAENLSYSLAGRR------------LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSG 49
Query: 108 RIAQGSLEGSVRIDGKPVTT---SYMKMVSSYVMQDDQL---FPMLTVFETFMFAAEVRL 161
++ S G V ++G P+ + + + + Q+ L F + V + M R
Sbjct: 50 ELSPDS--GEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQ--MGRIPHRS 105
Query: 162 PPSISRDEKK-KRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIG------IDII 214
DE+ + D GL A Y R +SGGE++RV + +
Sbjct: 106 GREPEEDERIAAQALAATDLSGL--AGRDY------RTLSGGEQQRVQLARVLAQLWPPV 157
Query: 215 HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274
LFLDEPTS LD + + + +AR G VL +H + DRI++L +
Sbjct: 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ 216
Query: 275 GRLVYMGSP 283
GR++ GSP
Sbjct: 217 GRVIASGSP 225
|
Length = 259 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 6e-23
Identities = 65/227 (28%), Positives = 110/227 (48%), Gaps = 32/227 (14%)
Query: 68 ITK---EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSVRI 120
+TK L D++ GE + ++GPSG GK+T L +AG LE G + I
Sbjct: 6 VTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG------LEEPTSGRIYI 59
Query: 121 DGKPVTTSYMK-----MVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVY 175
G+ VT K MV Q+ L+P +TV++ F ++R + +DE +RV
Sbjct: 60 GGRDVTDLPPKDRDIAMV----FQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVR 112
Query: 176 ELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAY 235
E+ + L + + +SGG+R+RV++G I+ +P + +DEP S LD+
Sbjct: 113 EVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRV 167
Query: 236 SVVEKVKDI-ARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
+ ++K + R G+ + H + M DRI V+ G++ +G
Sbjct: 168 QMRAELKRLQQRLGTTTIYVTHDQVEAMTM-ADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 8e-23
Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 35/244 (14%)
Query: 49 EFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG- 107
EF+N+++S +K+ +L DI+ GE +AI+GP+GAGK+T ++ L
Sbjct: 4 EFENVNFSYDEKKP-----------VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF 52
Query: 108 RIAQGSLEGSVRIDGKPVTT----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP 163
Q +G + IDG + S M+ V+QD LF T+ E +RL
Sbjct: 53 YDPQ---KGQILIDGIDIRDISRKSLRSMIG-VVLQDTFLFSG-TIMEN------IRLGR 101
Query: 164 SISRDEKKKRVYEL--LDQLGLRSAT--HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSL 219
+ DE+ + ++ T +G G +S GER+ ++I ++ P +
Sbjct: 102 PNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGG-NLSQGERQLLAIARAMLRDPKI 160
Query: 220 LFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279
L LDE TS +D+ + + E ++ + G ++ H+ S D+I+VL G+++
Sbjct: 161 LILDEATSNIDTETEKLIQEALEKL-MKGRTSIIIAHRLS--TIKNADKILVLDDGKIIE 217
Query: 280 MGSP 283
G+
Sbjct: 218 EGTH 221
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 1e-22
Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 30/219 (13%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT--SYM-- 130
L +S + +GE+ ++G +G GK+T L L G + S GS+R+DG+ +T +
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS--GSIRLDGEDITKLPPHERA 73
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKK--KRVYEL---LDQLGLRS 185
+ +YV Q ++FP LTV E + R +K +YEL L ++
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENLLTGLAAL-----PRRSRKIPDEIYELFPVLKEM---- 124
Query: 186 ATHTYIGNEGRRG--VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKD 243
GRRG +SGG++++++I ++ +P LL LDEPT G+ + + ++
Sbjct: 125 --------LGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRR 176
Query: 244 IARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
+ G + ++ + Q + L DR V+ RGR+V G+
Sbjct: 177 LRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGA 215
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 2e-22
Identities = 60/213 (28%), Positives = 110/213 (51%), Gaps = 15/213 (7%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
++ +S +GEI+ ++GP+GAGK+T + G + S G + +DG+ +T M +
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDS--GKILLDGQDITKLPMHKRA 73
Query: 135 ----SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY 190
Y+ Q+ +F LTV E + E+R + E+++++ ELL++ + T+
Sbjct: 74 RLGIGYLPQEASIFRKLTVEENILAVLEIRGLS---KKEREEKLEELLEEFHI-----TH 125
Query: 191 IGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI 250
+ +SGGERRRV I + P L LDEP +G+D + + + +K + G
Sbjct: 126 LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIG 185
Query: 251 VLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
VL+T H + + DR ++ G+++ G+P
Sbjct: 186 VLITDHNVRETLSI-TDRAYIIYEGKVLAEGTP 217
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-22
Identities = 66/196 (33%), Positives = 104/196 (53%), Gaps = 22/196 (11%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT----TSYMKMVSSYVMQD 140
GE +A++GPSGAGKST L+ L G + EGS+ ++G P+ S+ ++ +V Q
Sbjct: 348 GERVALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVPLADADADSWRDQIA-WVPQH 404
Query: 141 DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYEL--LDQL--GLRSATHTYIGNEGR 196
LF T+ A +RL + D + + E LD+ L T IG EG
Sbjct: 405 PFLFAG-TI------AENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIG-EGG 456
Query: 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIH 256
G+SGG+ +R+++ + LL LDEPT+ LD+ + V+E ++ +A+ G VL+ H
Sbjct: 457 AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ-GRTVLLVTH 515
Query: 257 QPSYRIQMLLDRIIVL 272
+ + L DRI+VL
Sbjct: 516 RLALAA--LADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 2e-22
Identities = 69/212 (32%), Positives = 107/212 (50%), Gaps = 13/212 (6%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT-TSYMKMV 133
L DIS +GE + ++GPSG GK+T L +AG Q + G++ G+ +T K
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTA--GTIYQGGRDITRLPPQKRD 77
Query: 134 SSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGN 193
V Q LFP LTV + + + R + R E +RV ELLD +GL + Y G
Sbjct: 78 YGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYPGQ 134
Query: 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI-ARTGSIVL 252
+SGG+++RV++ + P LL LDEP S LD+ + +++ + R G +
Sbjct: 135 -----LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTI 189
Query: 253 MTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284
M H + M DRI+V+ G + +G+P
Sbjct: 190 MVTHDQEEALSM-ADRIVVMNHGVIEQVGTPQ 220
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 3e-22
Identities = 69/215 (32%), Positives = 107/215 (49%), Gaps = 17/215 (7%)
Query: 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK-PV--TTSYMKMV 133
DIS + +GEI+ +G +GAGKST L L G + S G VR++GK P Y++
Sbjct: 42 DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS--GKVRVNGKDPFRRREEYLRS- 98
Query: 134 SSYVM-QDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG 192
VM Q QL+ L ++ + I DE +R+ L + L L
Sbjct: 99 IGLVMGQKLQLWWDLPALDSLEVLKLIY---EIPDDEFAERLDFLTEILDL-----EGFL 150
Query: 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIV 251
R +S G+R R + ++H P +LFLDEPT GLD + ++ E +K+ + V
Sbjct: 151 KWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATV 210
Query: 252 LMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286
L+T H I L DR++++ +G+LV+ G+ L
Sbjct: 211 LLTTHIFD-DIATLCDRVLLIDQGQLVFDGTLAQL 244
|
Length = 325 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 3e-22
Identities = 63/216 (29%), Positives = 104/216 (48%), Gaps = 28/216 (12%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
L +S +GEI+AI+G SG+GKST L L G G V +G+ ++ K+ S
Sbjct: 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG--LDNPTSGEVLFNGQSLS----KLSS 74
Query: 135 S-----------YVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL 183
+ ++ Q L P T E L S E K+R YE+L+++GL
Sbjct: 75 NERAKLRNKKLGFIYQFHHLLPDFTALENVAMPL---LIGKKSVKEAKERAYEMLEKVGL 131
Query: 184 RSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKD 243
+ +SGGER+RV+I ++++PSL+ DEPT LD+ +A + + + +
Sbjct: 132 EHRINHRPSE-----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLE 186
Query: 244 IART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
+ R + L+ H + LDR++ + G+L
Sbjct: 187 LNRELNTSFLVVTHDL--ELAKKLDRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 4e-22
Identities = 69/221 (31%), Positives = 113/221 (51%), Gaps = 17/221 (7%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT-TSYMKMV 133
L D++ + G ++A++GPSG+GKST L +AG S G +R++G+ T
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDS--GRIRLNGQDATRVHARDRK 73
Query: 134 SSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGN 193
+V Q LF LTV + F E+R P + K RV ELL+ + L +G+
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKA---KIKARVEELLELVQL-----EGLGD 125
Query: 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST---SAYSVVEKVKDIARTGSI 250
+SGG+R+RV++ + +P +L LDEP LD+ S + K+ D +
Sbjct: 126 RYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTT- 184
Query: 251 VLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLA 291
V +T H ++ + DRI+V++ G++ +GSP + H A
Sbjct: 185 VFVT-HDQEEAME-VADRIVVMSNGKIEQIGSPDEVYDHPA 223
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 4e-22
Identities = 80/252 (31%), Positives = 128/252 (50%), Gaps = 48/252 (19%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
LE ++L YS DG EA L I+ +A +GE++A++GP+GAGKST G
Sbjct: 2 LETRDLKYSY-----PDGT----EA--LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNG 50
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVS-----SYVMQ--DDQLF-PMLTVFETFMFAAEV 159
I + + G V I G+P+ ++ V Q DDQLF P TV E F
Sbjct: 51 -ILKPT-SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGP-- 104
Query: 160 RLPPSISRDEKKKRVYELLDQLGL----RSATHTYIGNEGRRGVSGGERRRVSIGIDIIH 215
L +S++E +KRV E L +G+ H +SGG+++RV+I +
Sbjct: 105 -LNLGLSKEEVEKRVKEALKAVGMEGFENKPPHH---------LSGGQKKRVAIAGILAM 154
Query: 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQ----PSYRIQMLLDRIIV 271
KP ++ LDEPTSGLD A +++ + D+ + G ++++ H P Y D++ V
Sbjct: 155 KPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYA-----DKVYV 209
Query: 272 LARGRLVYMGSP 283
++ G+++ G+P
Sbjct: 210 MSDGKIIKEGTP 221
|
Length = 275 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 1e-21
Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 19/212 (8%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT-TSYMKMV 133
L +S GE+ A++G +GAGKST + L+G G + IDGKPV +S +
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD--SGEILIDGKPVAFSSPRDAL 81
Query: 134 S---SYVMQDDQLFPMLTVFE-TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHT 189
+ + V Q+ L P L+V E F+ R I R ++R ELL +LGL T
Sbjct: 82 AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDT 141
Query: 190 YIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG- 248
+G+ +S +R+ V I + +L LDEPT+ L + + ++ + G
Sbjct: 142 LVGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGV 196
Query: 249 SIVLMT--IHQPSYRIQMLLDRIIVLARGRLV 278
+I+ ++ + + + + DRI VL GR+V
Sbjct: 197 AIIYISHRLDE----VFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 1e-21
Identities = 71/248 (28%), Positives = 103/248 (41%), Gaps = 30/248 (12%)
Query: 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDAL 105
LE K+L + K++ +L ++ GE+ AIMGP+G+GKST +
Sbjct: 2 MMLEIKDLHVEVEGKKE-----------ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTI 50
Query: 106 AGRIAQGSLEGSVRIDGKPVTTSYM----KMVSSYVMQDDQLFPMLTVFETFMFAAEVRL 161
G EG + DG+ + + Q P +T + A R
Sbjct: 51 MGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARR 110
Query: 162 PPSISRDEKKKRVYELLDQLGL-RSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLL 220
E K + E + LGL Y+ NE G SGGE++R I ++ +P L
Sbjct: 111 GARGILPEFIKELKEKAELLGLDEEFLERYV-NE---GFSGGEKKRNEILQLLLLEPKLA 166
Query: 221 FLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL-----DRIIVLARG 275
LDEP SGLD + V E + + G VL+ H Q LL D++ VL G
Sbjct: 167 ILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHY-----QRLLDYIKPDKVHVLYDG 221
Query: 276 RLVYMGSP 283
R+V G P
Sbjct: 222 RIVKSGDP 229
|
Length = 251 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 1e-21
Identities = 56/210 (26%), Positives = 103/210 (49%), Gaps = 27/210 (12%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSVRIDGK---PVT 126
+L D++ +G++ AI+G SG+GKST L+ + LE G V ++G+ P+
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGL------LEKFDSGQVYLNGQETPPLN 66
Query: 127 TS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLG 182
+ + + Y+ Q+ L TV E + + +S+ EK+++ E L+++G
Sbjct: 67 SKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVG 123
Query: 183 LRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVK 242
L I +SGGE++RV++ I+ P L+ DEPT LD + V++ +
Sbjct: 124 LNLKLKQKIYE-----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLL 178
Query: 243 DIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272
++ G +++ H P + DR+I L
Sbjct: 179 ELNDEGKTIIIVTHDPE--VAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 2e-21
Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 23/205 (11%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS--YMKMVSSYVMQDD 141
GEI+AIMGPSGAGKST L+ +AG I S GS++++ + T Y + V S + Q++
Sbjct: 23 DGEIVAIMGPSGAGKSTLLNLIAGFIEPAS--GSIKVNDQSHTGLAPYQRPV-SMLFQEN 79
Query: 142 QLFPMLTVFETFMFAAEVRLPPSISRD-EKKKRVYELLDQLGLRSATHTYIGNEGRR--- 197
LF LTV + L P + + E++++V + Q+G I + R
Sbjct: 80 NLFAHLTVRQNIGLG----LHPGLKLNAEQQEKVVDAAQQVG--------IADYLDRLPE 127
Query: 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI-VLMTIH 256
+SGG+R+RV++ ++ +L LDEP S LD ++ VK + +LM H
Sbjct: 128 QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTH 187
Query: 257 QPSYRIQMLLDRIIVLARGRLVYMG 281
S + +I V+++G++ +
Sbjct: 188 HLSDARA-IASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 2e-21
Identities = 55/211 (26%), Positives = 89/211 (42%), Gaps = 55/211 (26%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT--- 127
E +L ++S GE +AI+GPSG+GKST + G + S G VR+DG ++
Sbjct: 14 EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTS--GRVRLDGADISQWDP 71
Query: 128 -SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA 186
V Y+ QDD+L SI+ +
Sbjct: 72 NELGDHVG-YLPQDDEL-----------------FSGSIAEN------------------ 95
Query: 187 THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246
I +SGG+R+R+ + + P +L LDEP S LD ++ + + +
Sbjct: 96 ----I-------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA 144
Query: 247 TGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277
G+ ++ H+P + DRI+VL GR+
Sbjct: 145 AGATRIVIAHRPET-LAS-ADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 2e-21
Identities = 63/203 (31%), Positives = 100/203 (49%), Gaps = 15/203 (7%)
Query: 90 IMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT--TSYMKMVSSYVMQDDQLFPML 147
++GPSG GK+T L LAG S GS+ +DG+ VT +++ ++ V Q LFP +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDS--GSIMLDGEDVTNVPPHLRHINM-VFQSYALFPHM 57
Query: 148 TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRV 207
TV E F ++R P R E K RV E L + L +SGG+++RV
Sbjct: 58 TVEENVAFGLKMRKVP---RAEIKPRVLEALRLVQLEEFADRKPHQ-----LSGGQQQRV 109
Query: 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLL 266
++ ++ KP +L LDEP S LD + ++K I G + H + M
Sbjct: 110 ALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM-S 168
Query: 267 DRIIVLARGRLVYMGSPVALPAH 289
DRI ++ +G++ +G+P +
Sbjct: 169 DRIAIMRKGKIAQIGTPEEIYEE 191
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 2e-21
Identities = 76/250 (30%), Positives = 115/250 (46%), Gaps = 39/250 (15%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+EF+N+S+S + +L DIS GE +AI+GPSG+GKST + L
Sbjct: 329 IEFENVSFSY-----------PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLR 377
Query: 108 RIAQGSLEGSVRIDGKPVTT----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP 163
G + IDG + S K + V QD LF T+ E P
Sbjct: 378 LYD--PTSGEILIDGIDIRDISLDSLRKRIG-IVSQDPLLFSG-TIRENIALGR-----P 428
Query: 164 SISRDE-----KKKRVYELLDQL--GLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHK 216
+ +E K +E + L G T +G E +SGG+R+R++I ++
Sbjct: 429 DATDEEIEEALKLANAHEFIANLPDGY----DTIVG-ERGVNLSGGQRQRLAIARALLRN 483
Query: 217 PSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276
P +L LDE TS LD+ + + + +K + + G L+ H+ S I+ DRIIVL GR
Sbjct: 484 PPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRLS-TIKN-ADRIIVLDNGR 540
Query: 277 LVYMGSPVAL 286
+V G+ L
Sbjct: 541 IVERGTHEEL 550
|
Length = 567 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 3e-21
Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 16/227 (7%)
Query: 69 TKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT- 127
TK L+++S G+I ++G SGAGKST + + + + GSV +DG+ +TT
Sbjct: 15 TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV--NLLERPTSGSVIVDGQDLTTL 72
Query: 128 SYMKMVSS-----YVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLG 182
S ++ + + Q L TVF E+ P +DE K++V ELL +G
Sbjct: 73 SNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP---KDEIKRKVTELLALVG 129
Query: 183 LRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVK 242
L +Y N +SGG+++RV+I + P +L DE TS LD + S++E +K
Sbjct: 130 LGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLK 184
Query: 243 DIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAH 289
+I R + ++ I ++ + D + V++ G L+ G+ + +H
Sbjct: 185 EINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH 231
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 3e-21
Identities = 65/240 (27%), Positives = 120/240 (50%), Gaps = 25/240 (10%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
L +NL+ S K++ +++D+S + GEI+ ++GP+GAGK+T + G
Sbjct: 5 LVAENLAKSYKKRK------------VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVG 52
Query: 108 RIAQGSLEGSVRIDGKPVTTSYM----KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP 163
+ S G + +D + +T M ++ Y+ Q+ +F LTV + M E+R
Sbjct: 53 LVRPDS--GKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKD 110
Query: 164 SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLD 223
+ E+K+ + LL++ + T++ + +SGGERRRV I + P + LD
Sbjct: 111 L-KKAERKEELDALLEEFHI-----THLRDSKAYSLSGGERRRVEIARALAANPKFILLD 164
Query: 224 EPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
EP +G+D + + +K + G VL+T H + + DR +++ G+++ GSP
Sbjct: 165 EPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDI-CDRAYIISDGKVLAEGSP 223
|
Length = 243 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 4e-21
Identities = 65/225 (28%), Positives = 112/225 (49%), Gaps = 19/225 (8%)
Query: 58 MKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGS 117
M + K ++ +A +L++IS GE +AI GPSG GKST L +A I+ S G+
Sbjct: 2 MLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTS--GT 59
Query: 118 VRIDGKPVTT----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKR 173
+ +G+ V+T +Y + V SY Q LF TV + +F ++R +R +
Sbjct: 60 LLFEGEDVSTLKPEAYRQQV-SYCAQTPALFGD-TVEDNLIFPWQIR-----NRRPDRAA 112
Query: 174 VYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTS 233
+LL + L I + +SGGE++R+++ ++ P +L LDE TS LD ++
Sbjct: 113 ALDLLARFALPD----SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN 168
Query: 234 AYSVVEKVKDIARTGSIVLMTI-HQPSYRIQMLLDRIIVLARGRL 277
++ E + R ++ ++ I H I+ D++I L G
Sbjct: 169 KRNIEEMIHRYVREQNVAVLWITHDKDQAIRH-ADKVITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 4e-21
Identities = 64/197 (32%), Positives = 99/197 (50%), Gaps = 26/197 (13%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYM 130
+L ++ A RGE++A++G +GAGKST L L G + S G+V IDG+P+ S
Sbjct: 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQS--GAVLIDGEPLDYSRK 61
Query: 131 KMVS-----SYVMQ--DDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYE---LLDQ 180
++ V Q DDQLF V + F L +S E ++RV E +
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAA-DVDQDVAFGP---LNLGLSEAEVERRVREALTAVGA 117
Query: 181 LGLRS-ATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVE 239
GLR TH +SGGE++RV+I + +P +L LDEPT+GLD ++
Sbjct: 118 SGLRERPTHC---------LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA 168
Query: 240 KVKDIARTGSIVLMTIH 256
++ + G V+++ H
Sbjct: 169 ILRRLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 5e-21
Identities = 63/221 (28%), Positives = 112/221 (50%), Gaps = 24/221 (10%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGKPVTT 127
+L +IS + GE++ I+G SG+GKST ++ Q G V +DG +
Sbjct: 14 GPVILDNISLRIKPGEVVGIVGRSGSGKSTL-----TKLIQRFYVPENGRVLVDGHDLAL 68
Query: 128 ---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRV---YELLDQL 181
++++ V+Q++ LF ++ + A S+ R + ++ ++ + +L
Sbjct: 69 ADPAWLRRQVGVVLQENVLFNR-SIRDNIALADP---GMSMERVIEAAKLAGAHDFISEL 124
Query: 182 GLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKV 241
T +G +G G+SGG+R+R++I +IH P +L DE TS LD S ++++ +
Sbjct: 125 --PEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNM 181
Query: 242 KDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
DI G V++ H+ S DRIIV+ +GR+V GS
Sbjct: 182 HDIC-AGRTVIIIAHRLS--TVKNADRIIVMEKGRIVEQGS 219
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 7e-21
Identities = 56/234 (23%), Positives = 107/234 (45%), Gaps = 56/234 (23%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
L N+S+S +++++ +L ++S + +GE +A++G SG+GKST L L G
Sbjct: 1 LSINNVSFSYPEQEQQ----------VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTG 50
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISR 167
+ +G + +DG PV+ K +SS + +Q ++F +R
Sbjct: 51 DLK--PQQGEITLDGVPVSD-LEKALSSLISVLNQ--------RPYLFDTTLR------- 92
Query: 168 DEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTS 227
N GRR SGGER+R+++ ++ ++ LDEPT
Sbjct: 93 ------------------------NNLGRR-FSGGERQRLALARILLQDAPIVLLDEPTV 127
Query: 228 GLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
GLD + ++ + ++ + +++ +T H M D+I+ L G+++ G
Sbjct: 128 GLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HM--DKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 8e-21
Identities = 69/224 (30%), Positives = 103/224 (45%), Gaps = 33/224 (14%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS------ 128
++D+S GEI IMG SG+GKST L + I S G V IDG+ +
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTS--GKVLIDGQDIAAMSRKELR 97
Query: 129 -----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL 183
+ M V Q L P TV E F EV+ + R E+++R E L+ +GL
Sbjct: 98 ELRRKKISM----VFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGL 150
Query: 184 RSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST----SAYSVVE 239
H Y +SGG ++RV + + P +L +DE S LD ++
Sbjct: 151 EGWEHKYPDE-----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLR 205
Query: 240 KVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
++ +T IV +T H ++ L DRI ++ GRLV +G+P
Sbjct: 206 LQAELQKT--IVFIT-HDLDEALR-LGDRIAIMKDGRLVQVGTP 245
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 9e-21
Identities = 64/219 (29%), Positives = 109/219 (49%), Gaps = 19/219 (8%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYM 130
Y L D+S GE +AI+G +G+GKST L G + + G++ + G ++ +
Sbjct: 19 ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA--GTITVGGMVLSEETV 76
Query: 131 ----KMVSSYVMQD-DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS 185
+ V V Q+ D F TV + F E + R+E +RV + L Q+G+
Sbjct: 77 WDVRRQVG-MVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMED 132
Query: 186 ATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA 245
++ E R +SGG+++RV+I + +P ++ LDE TS LD V+E V+ +
Sbjct: 133 ----FLNREPHR-LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLK 187
Query: 246 RTGSIVLMTI-HQPSYRIQMLLDRIIVLARGRLVYMGSP 283
I +++I H Q DR+IV+ +G ++ G+P
Sbjct: 188 EQKGITVLSITHDLDEAAQA--DRVIVMNKGEILEEGTP 224
|
Length = 279 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.4 bits (229), Expect = 1e-20
Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 21/223 (9%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGS-VRIDGKPVTTS----- 128
LH + GE++A++GPSG+GKST L L+G I GS + + G+ V
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 129 ---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-----PSISRDEKKKRVYELLDQ 180
+ + Y+ Q L L+V E + A P S E+K+R + L +
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTR 139
Query: 181 LGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240
+G+ H + +SGG+++RV+I ++ + ++ DEP + LD SA V++
Sbjct: 140 VGMVHFAHQRVST-----LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDT 194
Query: 241 VKDIARTGSI-VLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
++DI + I V++T+HQ Y ++ +RI+ L +G + Y GS
Sbjct: 195 LRDINQNDGITVVVTLHQVDYALRY-CERIVALRQGHVFYDGS 236
|
Length = 262 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 1e-20
Identities = 70/253 (27%), Positives = 118/253 (46%), Gaps = 39/253 (15%)
Query: 42 MIPGHG-LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKST 100
+ G +EF+N+S+ + +L D+S + GE +AI+G SG+GKST
Sbjct: 465 LPKLQGEIEFENVSFRY----------GPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKST 514
Query: 101 FLDALAGRIAQGSLEGSVRIDGKPVT----TSYMKMVSSYVMQDDQLFPMLTVFETFMFA 156
L L G +G + +DG + S + V YV+QD LF ++ E
Sbjct: 515 LLKLLLGLYK--PQQGRILLDGVDLNDIDLASLRRQVG-YVLQDPFLFSG-SIRENIALG 570
Query: 157 AEVRLPPSISRDEKKKRVYELLDQLGLRSAT-------HTYIGNEGRRGVSGGERRRVSI 209
P + +E + E G T +G EG +SGG+R+R+++
Sbjct: 571 N-----PEATDEE----IIEAAQLAGAHEFIENLPMGYDTPVG-EGGANLSGGQRQRLAL 620
Query: 210 GIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRI 269
++ KP +L LDE TS LD + +++ + I + +++++ H+ S DRI
Sbjct: 621 ARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIA-HRLS--TIRSADRI 677
Query: 270 IVLARGRLVYMGS 282
IVL +G++V GS
Sbjct: 678 IVLDQGKIVEQGS 690
|
Length = 709 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 1e-20
Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 20/134 (14%)
Query: 99 STFLDALAGRIAQGSLEGSVRIDGKPVT-----TSYMKMVSSYVMQDDQLFPMLTVFETF 153
ST L + G + G++ +DG+ T K + V QD QLFP LTV E
Sbjct: 1 STLLKLITGLLQPT--SGTILLDGEDGTGLSSRKLLRKRIG-VVFQDPQLFPELTVRENL 57
Query: 154 MFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDI 213
F E R E L+++GL +SGG+++RV+I +
Sbjct: 58 FFGLR--------DKEADARAEEALERVGLPDFLDREPVGT----LSGGQKQRVAIARAL 105
Query: 214 IHKPSLLFLDEPTS 227
+ KP LL LDEPT+
Sbjct: 106 LKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 1e-20
Identities = 68/233 (29%), Positives = 109/233 (46%), Gaps = 46/233 (19%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKST-------FLDALAGRIAQGSLEGSVRIDG---K 123
+L D+S G+ +AI+GPSG+GKST F D GS+ IDG +
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD---------VSSGSILIDGQDIR 66
Query: 124 PVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDE-----KKKRVYELL 178
VT ++ V QD LF T+ + P + +E K ++++ +
Sbjct: 67 EVTLDSLRRAIGVVPQDTVLFND-TIGYNIRYGR-----PDATDEEVIEAAKAAQIHDKI 120
Query: 179 DQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVV 238
+ T +G G + +SGGE++RV+I I+ P +L LDE TS LD+ + +
Sbjct: 121 --MRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 239 EKVKDIA--RTGSIV---LMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286
++D++ RT ++ L TI + D+IIVL GR+V G+ L
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTI--------VNADKIIVLKDGRIVERGTHEEL 222
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 2e-20
Identities = 78/253 (30%), Positives = 118/253 (46%), Gaps = 52/253 (20%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+EFKN+++ + DG + L DIS GE +A++GPSG+GKST ++ +
Sbjct: 1 VEFKNVTF----RYPGDGPPV------LRDISLDIPAGETVALVGPSGSGKSTLVNLIP- 49
Query: 108 RIAQGSLEGSVRIDGKPVT----TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP 163
R G + IDG V S + + V QD LF TV E + P
Sbjct: 50 RFYDVD-SGRILIDGHDVRDYTLASLRRQIG-LVSQDVFLFND-TVAENIAYGR-----P 101
Query: 164 SISRDE-----KKKRVYELLDQL--GLRSATHTYIGNEGRRGV--SGGERRRVSIGIDII 214
+R+E + +E + +L G T IG RGV SGG+R+R++I ++
Sbjct: 102 GATREEVEEAARAANAHEFIMELPEGY----DTVIGE---RGVKLSGGQRQRIAIARALL 154
Query: 215 HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA--RTGSIV---LMTIHQPSYRIQMLLDRI 269
P +L LDE TS LD+ S V ++ + RT ++ L TI DRI
Sbjct: 155 KDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENA--------DRI 206
Query: 270 IVLARGRLVYMGS 282
+VL G++V G+
Sbjct: 207 VVLEDGKIVERGT 219
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 4e-20
Identities = 67/250 (26%), Positives = 109/250 (43%), Gaps = 49/250 (19%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDAL-- 105
+E ++L+ K L DI+ + ++ A++GPSG GKST L L
Sbjct: 8 IEVRDLNLYYGDKH------------ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNR 55
Query: 106 -AGRIAQGSLEGSVRIDGKPVTTSYMKMVS-----SYVMQDDQLFPMLTVFETFMFAAEV 159
I +EG V +DGK + + +V V Q FPM ++++ + +
Sbjct: 56 MNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPM-SIYDNVAYG--L 112
Query: 160 RLPPSISRDEKKKRVYELLDQLGL---------RSATHTYIGNEGRRGVSGGERRRVSIG 210
RL I E + V L + L +SA G+SGG+++R+ I
Sbjct: 113 RL-HGIKDKELDEIVESSLKKAALWDEVKDRLHKSAL----------GLSGGQQQRLCIA 161
Query: 211 IDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIH--QPSYRIQMLLDR 268
+ KP +L +DEPTS LD S + E + ++ + +IV++T H Q + R+ D
Sbjct: 162 RALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVT-HNMQQAARVS---DY 217
Query: 269 IIVLARGRLV 278
G LV
Sbjct: 218 TAFFYLGELV 227
|
Length = 253 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.6 bits (222), Expect = 5e-20
Identities = 56/224 (25%), Positives = 116/224 (51%), Gaps = 16/224 (7%)
Query: 70 KEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK-----P 124
K ++ D+S GEI+ ++GP+GAGK+T + G + + + G++ ID + P
Sbjct: 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDA--GNIIIDDEDISLLP 71
Query: 125 VTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR 184
+ + + Y+ Q+ +F L+V++ M ++R +S ++++ R EL+++ +
Sbjct: 72 LHARARRGIG-YLPQEASIFRRLSVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHI- 127
Query: 185 SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI 244
++ + + +SGGERRRV I + P + LDEP +G+D S + ++ +
Sbjct: 128 ----EHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHL 183
Query: 245 ARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPA 288
+G VL+T H + + +R ++++G L+ G+P +
Sbjct: 184 RDSGLGVLITDHNVRETLA-VCERAYIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 8e-20
Identities = 78/251 (31%), Positives = 120/251 (47%), Gaps = 43/251 (17%)
Query: 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDAL 105
H +E ++L YS + L++I+ A R +A++GP+GAGKST
Sbjct: 2 HLIETRDLCYSY-----------SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHF 50
Query: 106 AGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYV-----MQDDQLFPMLTVFETFMFAAEVR 160
G + S GSV I G+P+T ++ V +V DDQ+F TV + F
Sbjct: 51 NGILKPTS--GSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP-TVEQDIAFG---- 103
Query: 161 LPPSISRDEK--KKRVYELLDQLGL-----RSATHTYIGNEGRRGVSGGERRRVSIGIDI 213
P ++ DE+ RV L LGL R H +SGGE++RV+I I
Sbjct: 104 -PINLGLDEETVAHRVSSALHMLGLEELRDRVPHH----------LSGGEKKRVAIAGVI 152
Query: 214 IHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVL 272
+P +L LDEPT+GLD +++ + D+ T G V+ + HQ + + D I V+
Sbjct: 153 AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL-VPEMADYIYVM 211
Query: 273 ARGRLVYMGSP 283
+GR+V G+
Sbjct: 212 DKGRIVAYGTV 222
|
Length = 277 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 1e-19
Identities = 62/220 (28%), Positives = 105/220 (47%), Gaps = 27/220 (12%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSVRIDGKPVT-TSY 129
L D+S GE++A++GPSG+GK+T L +AG LE G++ G+ T
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG------LERPDSGTILFGGEDATDVPV 71
Query: 130 MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISR---DEKKKRVYELLDQLGLRSA 186
+ +V Q LF +TVF+ F V+ P R E + +V+ELL + L
Sbjct: 72 QERNVGFVFQHYALFRHMTVFDNVAFGLRVK--PRSERPPEAEIRAKVHELLKLVQLDWL 129
Query: 187 THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST---SAYSVVEKVKD 243
Y +SGG+R+RV++ + +P +L LDEP LD+ + ++ D
Sbjct: 130 ADRYPAQ-----LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD 184
Query: 244 IARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
+ H ++ + DR++V+ +GR+ +G+P
Sbjct: 185 --ELHVTTVFVTHDQEEALE-VADRVVVMNKGRIEQVGTP 221
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 1e-19
Identities = 65/219 (29%), Positives = 98/219 (44%), Gaps = 27/219 (12%)
Query: 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAG--RIAQG--SLEGSVRIDG-KPVTTSYMK 131
+ GQ + AI G SG+GK+T + +AG R +G L G D K + K
Sbjct: 19 TLPGQ----GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74
Query: 132 MVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYI 191
YV Q+ +LFP L+V + + P R +RV ELL I
Sbjct: 75 RRIGYVFQEARLFPHLSVRGNLRYGMKRARPSE--RRISFERVIELLG-----------I 121
Query: 192 GNEGRRGV---SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG 248
G+ R SGGE++RV+IG ++ P LL +DEP + LD Y ++ ++ +
Sbjct: 122 GHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181
Query: 249 SI-VLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286
I +L H + L DR++VL GR+ G +
Sbjct: 182 GIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEV 219
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 1e-19
Identities = 75/228 (32%), Positives = 104/228 (45%), Gaps = 37/228 (16%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
L D+S Q GE +AI+GPSG+GKST L L G S GSV DG+ + ++ V
Sbjct: 469 LDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES--GSVFYDGQDLAGLDVQAVR 526
Query: 135 S---YVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS------ 185
V+Q+ +L ++FE A L +E GL
Sbjct: 527 RQLGVVLQNGRLMSG-SIFENI--AGGAPLTL--------DEAWEAARMAGLAEDIRAMP 575
Query: 186 -ATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI 244
HT I +EG +SGG+R+R+ I ++ KP +L DE TS LD+ + V E ++ +
Sbjct: 576 MGMHTVI-SEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL 634
Query: 245 ARTGSIV----LMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPA 288
T IV L TI DRI VL GR+V G+ L A
Sbjct: 635 KVT-RIVIAHRLSTI--------RNADRIYVLDAGRVVQQGTYDELMA 673
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 1e-19
Identities = 64/225 (28%), Positives = 111/225 (49%), Gaps = 17/225 (7%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDAL-------AGRIAQGSLE--GSVRIDGKP 124
+LH I + GE++AI+GPSG+GK+T L + AG I G + + + +
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 125 VTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR 184
++ +V Q+ LFP TV E + + ++E R ELL ++GL
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVI--VKGEPKEEATARARELLAKVGLA 135
Query: 185 SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI 244
+Y R +SGG+++RV+I + +P ++ DEPTS LD V+ ++ +
Sbjct: 136 GKETSY-----PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQL 190
Query: 245 ARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAH 289
A+ +++ H+ S+ + + DR I + +GR+V G AL A
Sbjct: 191 AQEKRTMVIVTHEMSF-ARDVADRAIFMDQGRIVEQGPAKALFAD 234
|
Length = 250 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 2e-19
Identities = 65/250 (26%), Positives = 106/250 (42%), Gaps = 59/250 (23%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYL--LHDISGQAIRGEIMAIMGPSGAGKSTFLDAL 105
LE KNL KK G K+ Y+ + +S GE + ++G SG GKST +
Sbjct: 5 LEVKNL-----KKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLI 59
Query: 106 AGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSI 165
G G + +GK +T +
Sbjct: 60 LGLE--EPTSGEILFEGKDIT-------------------------------------KL 80
Query: 166 SRDEKKKRVYELLDQLGLRSAT-HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224
S++E+++RV ELL+++GL + Y +SGG+R+R+ I + P L+ DE
Sbjct: 81 SKEERRERVLELLEKVGLPEEFLYRY-----PHELSGGQRQRIGIARALALNPKLIVADE 135
Query: 225 PTSGLD-STSAYSVVEKVKDIARTGSIVLMTI-HQPSYRIQMLLDRIIVLARGRLVYMGS 282
P S LD S A ++ +KD+ + + I H S ++ + DRI V+ G++V +G
Sbjct: 136 PVSALDVSVQA-QILNLLKDLQEELGLTYLFISHDLSV-VRYISDRIAVMYLGKIVEIGP 193
Query: 283 PVAL---PAH 289
+ P H
Sbjct: 194 TEEVFSNPLH 203
|
Length = 268 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 2e-19
Identities = 71/238 (29%), Positives = 110/238 (46%), Gaps = 35/238 (14%)
Query: 31 KDAVVAAAGLKMIPGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAI 90
+ AAG + LE ++LS + +L +S GE +AI
Sbjct: 318 AEGSAPAAGAVGLGKPTLELRDLSAG----------YPGAPP-VLDGVSLDLPPGERVAI 366
Query: 91 MGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS---SYVMQDDQLFPML 147
+GPSG+GKST L LAG + L+G V +DG PV++ V S QD LF
Sbjct: 367 LGPSGSGKSTLLATLAGLLD--PLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDT- 423
Query: 148 TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEGRRGVS 200
TV E A P + +E ++ L+++GL T +G G R +S
Sbjct: 424 TVRENLRLAR-----PDATDEE----LWAALERVGLADWLRALPDGLDTVLGEGGAR-LS 473
Query: 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQP 258
GGER+R+++ ++ +L LDEPT LD+ +A ++E + A +G V++ H
Sbjct: 474 GGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 2e-19
Identities = 75/250 (30%), Positives = 111/250 (44%), Gaps = 37/250 (14%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
LE +NL+ S DG + + D+S +GEI A++G SG GKST L LAG
Sbjct: 20 LEIRNLTKSF------DG------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAG 67
Query: 108 RIAQGSLEGSVRIDGK------PVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFA-AEVR 160
+ G + +DG P M SY LFP +TV + F + +
Sbjct: 68 --FEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYA-----LFPHMTVEQNIAFGLKQDK 120
Query: 161 LPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLL 220
LP + E RV E+L + ++ +SGG+R+RV++ + +P LL
Sbjct: 121 LP----KAEIASRVNEMLGLVHMQE-----FAKRKPHQLSGGQRQRVALARSLAKRPKLL 171
Query: 221 FLDEPTSGLDSTSAYSVVEKVKDI-ARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279
LDEP LD + +V DI R G +M H + M RI ++ RG+ V
Sbjct: 172 LLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTM-AGRIAIMNRGKFVQ 230
Query: 280 MGSPVALPAH 289
+G P + H
Sbjct: 231 IGEPEEIYEH 240
|
Length = 377 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 2e-19
Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 21/219 (9%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG--RIAQGS--LEGSVRIDGKPVTTSYM 130
L+D+S GE+ ++GP+GAGK+T +D + G R +G +G + P
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSI-------SRDEKKKRVYELLDQLGL 183
+ Q +F LTV E A + S+ R E+++R+ ELL +GL
Sbjct: 81 AGIGRK-FQKPTVFENLTVRENLELA--LNRDKSVFASLFARLRAEERRRIDELLATIGL 137
Query: 184 RSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKD 243
+S G+++ + IG+ + P LL LDEP +G+ E +K
Sbjct: 138 GDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKS 192
Query: 244 IARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
+A SI+++ H + ++ + D++ VL G ++ GS
Sbjct: 193 LAGKHSILVVE-HDMGF-VREIADKVTVLHEGSVLAEGS 229
|
Length = 249 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 3e-19
Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 21/216 (9%)
Query: 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT-------TSY 129
D +GEI IMG SG+GKST + L R+ + + G + IDG+ +
Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRML-NRLIEPT-AGQIFIDGENIMKQSPVELREV 68
Query: 130 MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHT 189
+ V Q LFP +T+ + E+ E+K++ ELL +GL H
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHR 125
Query: 190 YIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-- 247
Y +SGG ++RV + + +P +L +DE S LD S+ +++K + T
Sbjct: 126 YPDE-----LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 248 GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
+IV +T H I+ + DRI+++ G +V +G+P
Sbjct: 181 KTIVFIT-HDLDEAIR-IGDRIVIMKAGEIVQVGTP 214
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 3e-19
Identities = 55/183 (30%), Positives = 92/183 (50%), Gaps = 13/183 (7%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
L DI+ GE++ ++GPSG GK+T L+ +AG + GS+ +DGKPV +
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQH--GSITLDGKPVEGPGAE--R 72
Query: 135 SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNE 194
V Q++ L P V + F ++ + + ++ + +++L ++GL A YI
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIWQ- 128
Query: 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI-ARTGSIVLM 253
+SGG+R+RV I + P LL LDEP LD+ + + + + TG VL+
Sbjct: 129 ----LSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLL 184
Query: 254 TIH 256
H
Sbjct: 185 ITH 187
|
Length = 255 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 4e-19
Identities = 68/212 (32%), Positives = 102/212 (48%), Gaps = 15/212 (7%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT---- 126
+ +L IS GE + I+GPSG+GKST L G GSVR+DG +
Sbjct: 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVG--IWPPTSGSVRLDGADLRQWDR 405
Query: 127 TSYMKMVSSYVMQDDQLFPMLTVFETFM-FAAEVRLPPSISRDEKKKRVYELLDQLGLRS 185
+ + Y+ QD +LF T+ E F E P + + V+EL+ L L
Sbjct: 406 EQLGRHI-GYLPQDVELFDG-TIAENIARFGEEAD-PEKVIEAARLAGVHELI--LRLPQ 460
Query: 186 ATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA 245
T IG EG +SGG+R+R+++ + P L+ LDEP S LDS ++ +
Sbjct: 461 GYDTRIG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK 519
Query: 246 RTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277
G V++ H+PS +D+I+VL GR+
Sbjct: 520 ARGGTVVVIAHRPS--ALASVDKILVLQDGRI 549
|
Length = 580 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 4e-19
Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 28/224 (12%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR----IAQGSLEGSVRIDGKPVTTSY- 129
L +I+ + ++ A++GPSG GKST L +L R + +EG V DG+ +
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSL-NRMNDLVPGVRIEGKVLFDGQDIYDKKI 75
Query: 130 ----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-- 183
++ V Q FPM ++++ + RL + E + V E L + L
Sbjct: 76 DVVELRRRVGMVFQKPNPFPM-SIYDNIAYG--PRLHGIKDKKELDEIVEESLKKAALWD 132
Query: 184 --RSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKV 241
+ H G+SGG+++R+ I + +P +L LDEPTS LD + + E +
Sbjct: 133 EVKDRLHDS-----ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELI 187
Query: 242 KDIARTGSIVLMTIH--QPSYRIQMLLDRIIVLARGRLVYMGSP 283
+++ + +IV++T H Q + RI DR G LV G
Sbjct: 188 QELKKKYTIVIVT-HNMQQAARIS---DRTAFFYDGELVEYGPT 227
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 5e-19
Identities = 70/246 (28%), Positives = 122/246 (49%), Gaps = 35/246 (14%)
Query: 51 KNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIA 110
+NL++ M+ G K+A L +++ + GE + ++G +G+GKST + L G +
Sbjct: 6 ENLTHIYME-----GTPFEKKA--LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK 58
Query: 111 QGSLEGSVRIDGKPVTTSYMKMVS-----SYVMQ--DDQLFPMLTVFETFMFAAEVRLPP 163
S G + IDG +T +K+ V Q + QLF T+ + F P
Sbjct: 59 PTS--GKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE-TIEKDIAFG------P 109
Query: 164 S---ISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLL 220
+S +E + RV ++ +GL ++ +SGG++RRV+I + +P +L
Sbjct: 110 INLGLSEEEIENRVKRAMNIVGLDYED---YKDKSPFELSGGQKRRVAIAGVVAMEPKIL 166
Query: 221 FLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYR---IQMLLDRIIVLARGRL 277
LDEPT+GLD ++ K+K++ + + MTI S+ + L DRIIV+ +G+
Sbjct: 167 ILDEPTAGLDPKGRDEILNKIKELHKEYN---MTIILVSHSMEDVAKLADRIIVMNKGKC 223
Query: 278 VYMGSP 283
G+P
Sbjct: 224 ELQGTP 229
|
Length = 287 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 6e-19
Identities = 67/216 (31%), Positives = 108/216 (50%), Gaps = 16/216 (7%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
+ IS RG+ + ++G SG+GKST AL I +G +R DG+ + K +
Sbjct: 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMR 359
Query: 135 SY------VMQD--DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA 186
V QD L P +TV + V P +S E+ +RV E L+++GL A
Sbjct: 360 PLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRV-HEPKLSAAERDQRVIEALEEVGLDPA 418
Query: 187 THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246
T +E SGG+R+R++I +I KP L+ LDEPTS LD + V++ ++D+ +
Sbjct: 419 TRNRYPHE----FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQ 474
Query: 247 TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
+ + I ++ L R+IV+ G++V G
Sbjct: 475 KHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGP 510
|
Length = 534 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 7e-19
Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 19/221 (8%)
Query: 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS--YMKMVS 134
+S RGE ++GP+GAGK+T L L G + GS+ + G+PV + + +
Sbjct: 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA--GSISLCGEPVPSRARHARQRV 82
Query: 135 SYVMQDDQLFPMLTVFETFM-FAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGN 193
V Q D L P TV E + F L + +R V LL+ L + +G
Sbjct: 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAAR----ALVPPLLEFAKLENKADAKVGE 138
Query: 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLM 253
+SGG +RR+++ +++ P +L LDEPT+GLD + + + E+++ + G +L+
Sbjct: 139 -----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILL 193
Query: 254 TIH--QPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAG 292
T H + + R L DR+ V+ GR + G+P AL G
Sbjct: 194 TTHFMEEAER---LCDRLCVIEEGRKIAEGAPHALIESEIG 231
|
Length = 306 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 9e-19
Identities = 64/206 (31%), Positives = 100/206 (48%), Gaps = 26/206 (12%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMK--------MVSS 135
+GEI A++G +GAGKST + L G S G +R+DGK V + MV
Sbjct: 29 KGEIHALLGENGAGKSTLMKILFGLYQPDS--GEIRVDGKEVRIKSPRDAIRLGIGMVHQ 86
Query: 136 YVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195
+ M L P LTV E + E I R + + R+ EL ++ GL + +
Sbjct: 87 HFM----LVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVAD-- 140
Query: 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG-SIVLMT 254
+S GE++RV I + LL LDEPT+ L A + E ++ +A G +I+ +T
Sbjct: 141 ---LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFIT 197
Query: 255 --IHQPSYRIQMLLDRIIVLARGRLV 278
+ + + + DR+ VL RG++V
Sbjct: 198 HKLKE----VMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 9e-19
Identities = 62/211 (29%), Positives = 107/211 (50%), Gaps = 19/211 (9%)
Query: 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT-TSYMKMVSSYVMQ 139
RGE +AI+GPSGAGKST L+ +AG + S GS+ ++G+ T T + S + Q
Sbjct: 21 TVERGERVAILGPSGAGKSTLLNLIAGFLTPAS--GSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 140 DDQLFPMLTVFETFMFAAEVRLPPSISRD-EKKKRVYELLDQLGLRSATHTYIGNEGRRG 198
++ LF LTV + L P + + ++++++ + Q+G+ G
Sbjct: 79 ENNLFSHLTVAQNIGLG----LNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQ----- 129
Query: 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI-VLMTIHQ 257
+SGG+R+RV++ ++ + +L LDEP S LD ++ V + + + +LM H
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHS 189
Query: 258 --PSYRIQMLLDRIIVLARGRLVYMGSPVAL 286
+ RI R +V+A GR+ + G L
Sbjct: 190 LEDAARIA---PRSLVVADGRIAWDGPTDEL 217
|
Length = 232 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 1e-18
Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 36/239 (15%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
LE KNLS K+ K +++IS + + ++GP+GAGKST L + G
Sbjct: 1 LETKNLS----KRFGKQTA--------VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITG 48
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVR-LPPSIS 166
+ S G + DG P T + + S +++ L+ LT E + LP S
Sbjct: 49 ILRPTS--GEIIFDGHPWTRKDLHKIGS-LIESPPLYENLTARENLKVHTTLLGLPDS-- 103
Query: 167 RDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV---SGGERRRVSIGIDIIHKPSLLFLD 223
R+ E+L+ + L N G++ S G ++R+ I I +++ P LL LD
Sbjct: 104 ------RIDEVLNIVDL--------TNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILD 149
Query: 224 EPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
EPT+GLD + E ++ G V+++ H S +Q L D I +++ G L Y G
Sbjct: 150 EPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGK 207
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.9 bits (219), Expect = 1e-18
Identities = 81/263 (30%), Positives = 121/263 (46%), Gaps = 61/263 (23%)
Query: 42 MIPGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTF 101
MI E KN+S K + G I L+++S GEI ++G SGAGKST
Sbjct: 1 MI-----ELKNIS----KVFPQGGRTIHA----LNNVSLHIPAGEIFGVIGASGAGKSTL 47
Query: 102 LDALAGRIAQGSLE----GSVRIDGKPVTTSYMKMVSSYVMQDDQL-------------F 144
+ R LE G V +DG+ +T + + +L F
Sbjct: 48 I-----RCINL-LERPTSGRVLVDGQDLTA----------LSEKELRKARRQIGMIFQHF 91
Query: 145 PML---TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201
+L TVF+ E+ + E K RV ELL+ +GL Y +SG
Sbjct: 92 NLLSSRTVFDNVALPLEL---AGTPKAEIKARVTELLELVGLSDKADRYPAQ-----LSG 143
Query: 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-G-SIVLMTIHQPS 259
G+++RV+I + P +L DE TS LD + S++E +KDI R G +IVL+T H+
Sbjct: 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLIT-HEMD 202
Query: 260 YRIQMLLDRIIVLARGRLVYMGS 282
++ + DR+ V+ GRLV G+
Sbjct: 203 V-VKRICDRVAVIDAGRLVEQGT 224
|
Length = 343 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 1e-18
Identities = 74/246 (30%), Positives = 117/246 (47%), Gaps = 42/246 (17%)
Query: 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIR-GEIMAIMGPSGAGKSTFLDA 104
+EF+N+S++ ++ L ++S IR GE +AI+G G+GKST L
Sbjct: 462 GEIEFRNVSFAYPGQETP----------ALDNVSLT-IRPGEKVAIIGRIGSGKSTLLKL 510
Query: 105 LAGRIAQGSLEGSVRIDGKPVTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRL 161
L G EGSV +DG + + ++ YV QD +LF T+ + A
Sbjct: 511 LLG--LYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLF-YGTLRDNIALGA---- 563
Query: 162 PPSISRDEKKKRVYELLDQLGLRS--ATH-----TYIGNEGRRGVSGGERRRVSIGIDII 214
P DE + + G+ H IG E R +SGG+R+ V++ ++
Sbjct: 564 -PYAD-DE---EILRAAELAGVTEFVRRHPDGLDMQIG-ERGRSLSGGQRQAVALARALL 617
Query: 215 HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQML--LDRIIVL 272
P +L LDEPTS +D+ S +++K ++VL+T H R +L +DRIIV+
Sbjct: 618 RDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVT-H----RTSLLDLVDRIIVM 672
Query: 273 ARGRLV 278
GR+V
Sbjct: 673 DNGRIV 678
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 1e-18
Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 41/227 (18%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
LEF+N+S + LL D+S + RG+ +AI+GP+GAGKST L LAG
Sbjct: 322 LEFENVSKGYDGGR-----------LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG 370
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQD-DQLFPMLTVFETFMFAAEVRLPPSIS 166
+ G L G+V++ G+ V Y Q D+L P TV E P
Sbjct: 371 EL--GPLSGTVKV-GETVKIGYFD-------QHRDELDPDKTVLEELS-----EGFP--- 412
Query: 167 RDEKKKRVYELLDQLGLRSAT-HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEP 225
D ++ V L + G +G +SGGE+ R+ + ++ P+LL LDEP
Sbjct: 413 -DGDEQEVRAYLGRFGFTGEDQEKPVGV-----LSGGEKARLLLAKLLLQPPNLLLLDEP 466
Query: 226 TSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272
T+ LD S ++ E + D G+++L++ H + + + RI ++
Sbjct: 467 TNHLDIESLEALEEALLD--FEGTVLLVS-HDRYF-LDRVATRIWLV 509
|
Length = 530 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 1e-18
Identities = 63/217 (29%), Positives = 112/217 (51%), Gaps = 20/217 (9%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS---YMK 131
L I+ +GE+ AI+G +GAGKST L G + S G + DGKP+ S MK
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS--GRILFDGKPIDYSRKGLMK 79
Query: 132 MVSSYVM----QDDQLFPMLTVFETFMFAA-EVRLPPSISRDEKKKRVYELLDQLGLRSA 186
+ S M D+QLF +V++ F A ++LP DE +KRV L + G+
Sbjct: 80 LRESVGMVFQDPDNQLFSA-SVYQDVSFGAVNLKLP----EDEVRKRVDNALKRTGI--- 131
Query: 187 THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246
++ ++ +S G+++RV+I ++ +P +L LDEPT+GLD +++ + ++ +
Sbjct: 132 --EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK 189
Query: 247 TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
+ ++ + + D + V+ GR++ G+P
Sbjct: 190 ELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 226
|
Length = 283 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 2e-18
Identities = 64/253 (25%), Positives = 125/253 (49%), Gaps = 34/253 (13%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+EF+N++ K+ G +++++ + +GE + ++GPSG+GK+T + +
Sbjct: 1 IEFENVT-----KRYGGG------KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTM-KMIN 48
Query: 108 RIAQGSLEGSVRIDGKPVT-TSYMKMVSS--YVMQDDQLFPMLTVFETFMFAAEVRLPPS 164
R+ + + G + IDG+ + +++ YV+Q LFP +TV E + L P
Sbjct: 49 RLIEPT-SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEEN------IALVPK 101
Query: 165 I---SRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLF 221
+ +++ ++R ELL +GL A + +SGG+++RV + + P LL
Sbjct: 102 LLKWPKEKIRERADELLALVGLDPAE---FADRYPHELSGGQQQRVGVARALAADPPLLL 158
Query: 222 LDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIH--QPSYRIQMLLDRIIVLARGRLV 278
+DEP LD + + E+ K + + G ++ H ++R L DRI ++ G +V
Sbjct: 159 MDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFR---LADRIAIMKNGEIV 215
Query: 279 YMGSPVALPAHLA 291
+G+P + A
Sbjct: 216 QVGTPDEILRSPA 228
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 2e-18
Identities = 72/214 (33%), Positives = 102/214 (47%), Gaps = 11/214 (5%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG---KPVTT 127
+ L IS GE +AI+GPSG+GKST + G GSVR+DG K
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG--IWPPTSGSVRLDGADLKQWDR 387
Query: 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
Y+ QD +LFP TV E E P I K V+EL+ L L
Sbjct: 388 ETFGKHIGYLPQDVELFPG-TVAENIARFGENADPEKIIEAAKLAGVHELI--LRLPDGY 444
Query: 188 HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART 247
T IG G +SGG+R+R+++ + P L+ LDEP S LD ++ +K +
Sbjct: 445 DTVIG-PGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKAR 503
Query: 248 GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
G V++ H+PS + +D+I+VL GR+ G
Sbjct: 504 GITVVVITHRPS--LLGCVDKILVLQDGRIARFG 535
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 2e-18
Identities = 69/230 (30%), Positives = 106/230 (46%), Gaps = 32/230 (13%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
++D S GEI IMG SG+GKST + L I G + +DGK + +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR--GEILVDGKDIAKLSAAELR 101
Query: 135 -------SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
S V Q L P TV E F EV+ + + E+++R E L+ +GL
Sbjct: 102 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYA 158
Query: 188 HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLD----STSAYSVVEKVKD 243
Y NE +SGG ++RV + + + P +L +DE S LD + ++E
Sbjct: 159 DKYP-NE----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK 213
Query: 244 IARTGSIVLMTIH--QPSYRIQMLLDRIIVLARGRLVYMGSP---VALPA 288
+ +T IV +T H + RI DRI ++ G +V +G+P + PA
Sbjct: 214 LKKT--IVFIT-HDLDEALRIG---DRIAIMKDGEIVQVGTPEEILLNPA 257
|
Length = 386 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 2e-18
Identities = 68/251 (27%), Positives = 108/251 (43%), Gaps = 34/251 (13%)
Query: 43 IPGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFL 102
I +E KN+S + + KK +L D+S Q GE AI+GP+GAGK+T L
Sbjct: 27 INEPLIELKNVS--VRRNGKK----------ILGDLSWQVNPGEHWAIVGPNGAGKTTLL 74
Query: 103 DALAGRIAQGSLEGSVRIDGKP---VTTSY-----MKMVSSYVMQDDQLFPMLTVFETFM 154
L G S G V + G+ T + + +VSS + + + TV + +
Sbjct: 75 SLLTGEHPPSS--GDVTLLGRRFGKGETIFELRKRIGLVSSELHERFR--VRETVRDVVL 130
Query: 155 --FAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGID 212
F A + + E LL+ LG + G+ +S GE+RRV I
Sbjct: 131 SGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGS-----LSQGEQRRVLIARA 185
Query: 213 IIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA--RTGSIVLMTIHQPSYRIQMLLDRII 270
++ P LL LDEP GLD + ++ +++++A +L H I +
Sbjct: 186 LVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRL 244
Query: 271 VLARGRLVYMG 281
+L G +V G
Sbjct: 245 LLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 3e-18
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 14/188 (7%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYM 130
L +S GE + + GP+G+GK+T L +AG + G++++DG + +
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDIDDPDV 71
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY 190
Y+ + + P LTV E F A ++ + L+ +GL H
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAF-------LGGEELDIAAALEAVGLAPLAHLP 124
Query: 191 IGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI 250
G +S G++RRV++ ++ + LDEPT+ LD+ + E ++ G I
Sbjct: 125 FGY-----LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGI 179
Query: 251 VLMTIHQP 258
V+ H P
Sbjct: 180 VIAATHIP 187
|
Length = 207 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 90.1 bits (223), Expect = 3e-18
Identities = 65/203 (32%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 86 EIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVM--QDDQL 143
+I A +G +GAGK+T L L G + S G+V + GK + T+ + S M Q + L
Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLLPPTS--GTVLVGGKDIETNLDAVRQSLGMCPQHNIL 1014
Query: 144 FPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203
F LTV E +F A+++ S +E + + +L+ GL NE + +SGG
Sbjct: 1015 FHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKR-----NEEAQDLSGGM 1066
Query: 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQ 263
+R++S+ I + ++ LDEPTSG+D S S+ + + R+G ++M+ H
Sbjct: 1067 QRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHHMD-EAD 1124
Query: 264 MLLDRIIVLARGRLVYMGSPVAL 286
+L DRI ++++GRL G+P+ L
Sbjct: 1125 LLGDRIAIISQGRLYCSGTPLFL 1147
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 3e-18
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 19/217 (8%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY----- 129
L DI+ GE + ++GPSGAGKS+ L L + + G++ I G S
Sbjct: 18 LFDITLDCPEGETLVLLGPSGAGKSSLLRVL--NLLEMPRSGTLNIAGNHFDFSKTPSDK 75
Query: 130 ----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS 185
++ V Q L+P LTV E + A R+ +S+D+ R +LL +L L+
Sbjct: 76 AIRDLRRNVGMVFQQYNLWPHLTVQEN-LIEAPCRVL-GLSKDQALARAEKLLKRLRLKP 133
Query: 186 ATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA 245
Y + +SGG+++RV+I ++ +P +L DEPT+ LD +V +K++A
Sbjct: 134 YADRYPLH-----LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA 188
Query: 246 RTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
TG ++ H+ + R++ + G +V G
Sbjct: 189 ETGITQVIVTHEVEV-ARKTASRVVYMENGHIVEQGD 224
|
Length = 242 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 85.8 bits (212), Expect = 4e-18
Identities = 68/216 (31%), Positives = 108/216 (50%), Gaps = 15/216 (6%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS--YMK 131
+++D+S RGE ++GP+GAGKST L G I+ G + + G+PV + +
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLAR 76
Query: 132 MVSSYVMQDDQLFPMLTVFETFM-FAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY 190
+ V Q D L P TV E + F + S E + + LL+ L S
Sbjct: 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGM----STREIEAVIPSLLEFARLESKADVR 132
Query: 191 IGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI 250
+ +SGG +RR+++ +I+ P LL LDEPT+GLD + + + E+++ + G
Sbjct: 133 VAL-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKT 187
Query: 251 VLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286
+L+T H + L DR+ VL GR + G P AL
Sbjct: 188 ILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHAL 222
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 5e-18
Identities = 56/228 (24%), Positives = 106/228 (46%), Gaps = 21/228 (9%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE--GSVRIDGKPVT-TSYM 130
L+ D++ RGE++A++G SG+GKS A+ G + G + G + +DG+P+ S
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR 60
Query: 131 KMVSSYVMQD--DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT- 187
+ +MQ+ P+ T+ + S + + + E L+ +GL
Sbjct: 61 GRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLS---KQARALILEALEAVGLPDPEE 117
Query: 188 --HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI- 244
Y +SGG +RV I + ++ +P L DEPT+ LD + V++ ++++
Sbjct: 118 VLKKYPFQ-----LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELR 172
Query: 245 ARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL---PAH 289
G+ +L+ H ++ D + V+ GR+V G+ + P H
Sbjct: 173 QLFGTGILLITHDLGVVARI-ADEVAVMDDGRIVERGTVKEIFYNPKH 219
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 7e-18
Identities = 58/229 (25%), Positives = 103/229 (44%), Gaps = 31/229 (13%)
Query: 78 ISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT---SYMKMVS 134
+S + GEI+ ++GP+GAGKST L +AG + GS++ G+P+ + +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWSAAELARHR 71
Query: 135 SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNE 194
+Y+ Q + VF+ + P + + E+ + LGL +
Sbjct: 72 AYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQ- 126
Query: 195 GRRGVSGGERRRVSIGIDI--IHKPS------LLFLDEPTSGLDSTSAYSVVEKVKDIAR 246
+SGGE +RV + + + P LL LDEP + LD ++ + ++ +
Sbjct: 127 ----LSGGEWQRVRLAAVVLQVW-PDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ 181
Query: 247 TGSIVLMTIH--QPSYRIQMLLDRIIVLARGRLVYMGSP--VALPAHLA 291
G V+M+ H + R DR+ +L +G+L+ G V P +LA
Sbjct: 182 QGIAVVMSSHDLNHTLRHA---DRVWLLKQGKLLASGRRDEVLTPENLA 227
|
Length = 248 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 1e-17
Identities = 67/298 (22%), Positives = 124/298 (41%), Gaps = 19/298 (6%)
Query: 533 RTALNVIRTPELFLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFFSS 592
R L + P L +MALILSS+F NL + +R + FA+ FSS
Sbjct: 410 RNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALF-FAILFNAFSS 468
Query: 593 NDAVPTFIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS 652
+ + + R I + + Y S+ ++S++ +PF I+ + F I ++ +
Sbjct: 469 LLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRT 528
Query: 653 LLNFWMILFASLITT---NAYVMLVSALVPSYIAGYAVVIATTALF--FLTCGFFLKRGH 707
F+ L I T + + A+ + A+ A L + GF + R
Sbjct: 529 AGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSE--AMTPAAILLLALSIYTGFAIPRPS 586
Query: 708 IPPYWRWLHYISAIKYPFEALLTNEFKGK--ECYNGAP-GDLSPGPLGEVKLSKLHNTTA 764
+ + +W++Y++ + Y FE+L+ NEF G+ EC P G K+ T
Sbjct: 587 MLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVC-----TV 641
Query: 765 ALLRP--DCTLIGEDIVYSMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYSKNVRK 820
P D + + S + W + I++ + V + F Y++L ++K ++
Sbjct: 642 VGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFF-FFVYILLTEFNKGAKQ 698
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 1e-17
Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 33/244 (13%)
Query: 53 LSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG 112
+S S K G + K A L+ +S + G+ + ++G +GAGKST L+A+AG +
Sbjct: 2 ISLSNATKTFFKGTPLEKRA--LNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT 59
Query: 113 SLEGSVRIDGKPVTTSYMKMVSSY---VMQD--DQLFPMLTVFETFMFAAEVR-----LP 162
S G + IDG VT + ++ V QD P LT+ E + AE R L
Sbjct: 60 S--GQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEEN-LALAESRGKKRGLS 116
Query: 163 PSIS---RDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSL 219
+++ R ++R+ L LGL + IG +SGG+R+ +S+ + +H P +
Sbjct: 117 SALNERRRSSFRERLARL--GLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKI 169
Query: 220 LFLDEPTSGLDSTSAYSVVEKVKDIARTGSI-VLMTIHQPSYRIQMLLD---RIIVLARG 275
L LDE T+ LD +A V+E I + LM H ++ LD R+I+L G
Sbjct: 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHN----MEDALDYGNRLIMLHSG 225
Query: 276 RLVY 279
++V
Sbjct: 226 KIVL 229
|
Length = 263 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 1e-17
Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 32/199 (16%)
Query: 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKM 132
+LH++S GE+MAI+G SG+GKST L L G S G V +G+P++ K+
Sbjct: 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS--GDVIFNGQPMS----KL 76
Query: 133 VSS-----------YVMQDDQLFPMLTVFETFMFAAEVRLPPSI---SRDEKKKRVYELL 178
S+ ++ Q L P T E V +P I E R E+L
Sbjct: 77 SSAAKAELRNQKLGFIYQFHHLLPDFTALEN------VAMPLLIGKKKPAEINSRALEML 130
Query: 179 DQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVV 238
+GL + + +E +SGGER+RV+I +++ P L+ DEPT LD+ +A S+
Sbjct: 131 AAVGLEHRAN-HRPSE----LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIF 185
Query: 239 EKVKDI-ARTGSIVLMTIH 256
+ + ++ G+ L+ H
Sbjct: 186 QLLGELNRLQGTAFLVVTH 204
|
Length = 233 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 2e-17
Identities = 47/248 (18%), Positives = 95/248 (38%), Gaps = 21/248 (8%)
Query: 500 QELEDMEEKV-----LDEPDHGPKFANPWLREVAVLSWRTALNVIRTPELFLSREIVFAV 554
EL+ +E ++ ++PD K+A + ++ WRT RTP+ S+ +
Sbjct: 1048 NELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIF 1107
Query: 555 MALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFFSSNDAVPTFI-QERFIFIRETSHN 613
AL + F + N++ ++ V +P F+ Q +RE
Sbjct: 1108 AALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLI-QQYLPPFVAQRDLYEVRERPSR 1166
Query: 614 AYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKL----------HSSLLNFWMILFAS 663
+ +++ + + V +P+ + G F I + H + FW++
Sbjct: 1167 TFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMF 1226
Query: 664 LITTNAYVMLVSALVPSYIAGYAVVIATT--ALFFLTCGFFLKRGHIPPYWRWLHYISAI 721
+ + +V + P A A V+A+ + CG +P +W +++ S
Sbjct: 1227 FLYFSTLGQMVISFNP--NADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPF 1284
Query: 722 KYPFEALL 729
Y +ALL
Sbjct: 1285 TYLVQALL 1292
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 2e-17
Identities = 63/209 (30%), Positives = 105/209 (50%), Gaps = 29/209 (13%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT----TSYMKMVSSYVMQD 140
G+ +A++GPSGAGK++ L+AL G + +GS++I+G + S+ K +S +V Q+
Sbjct: 376 GQRIALVGPSGAGKTSLLNALLGFL---PYQGSLKINGIELRELDPESWRKHLS-WVGQN 431
Query: 141 DQLFPMLTVFETFMFAAEVRLPPSISRDE-----KKKRVYELLDQL--GLRSATHTYIGN 193
QL T+ + + P S ++ + V E L L GL T IG
Sbjct: 432 PQLPHG-TLRDNVLLGN-----PDASDEQLQQALENAWVSEFLPLLPQGL----DTPIG- 480
Query: 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLM 253
+ G+S G+ +R+++ ++ LL LDEPT+ LD+ S V++ + +R LM
Sbjct: 481 DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR-RQTTLM 539
Query: 254 TIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
HQ Q D+I V+ G++V G
Sbjct: 540 VTHQLEDLAQW--DQIWVMQDGQIVQQGD 566
|
Length = 588 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-17
Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 37/246 (15%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+ +N+S S K +L D+S +G I +I+GP+GAGKST L ++
Sbjct: 2 ITIENVSKSYGTKV------------VLDDVSLDIPKGGITSIIGPNGAGKSTLL-SMMS 48
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVS---SYVMQDDQLFPMLTVFETFMFAAEVRLPPS 164
R+ + G + IDG +T++ K ++ S + Q++ + LTV + F R P S
Sbjct: 49 RLLKKD-SGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFG---RFPYS 104
Query: 165 ISR--DEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFL 222
R E ++ + E ++ L L + Y+ +SGG+R+R I + + + L
Sbjct: 105 QGRLTKEDRRIINEAIEYLHLEDLSDRYLDE-----LSGGQRQRAFIAMVLAQDTDYVLL 159
Query: 223 DEPTSGLD---STSAYSVVEK-VKDIARTGSIVLMTIHQPS-YRIQMLLDRIIVLARGRL 277
DEP + LD S ++ + ++ +T +VL I+ S Y D I+ L G++
Sbjct: 160 DEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCY-----SDHIVALKNGKV 214
Query: 278 VYMGSP 283
V GSP
Sbjct: 215 VKQGSP 220
|
Length = 252 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 2e-17
Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 16/207 (7%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQL 143
+GE++ ++GP+GAGK+T L A+ G I +G+V++ G + + YV Q +
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPA--KGTVKVAGASPGKGWRHI--GYVPQRHEF 60
Query: 144 ---FPMLTVFETFMFAAEVRLPP-SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199
FP ++V T M + V + L ++GL +G +
Sbjct: 61 AWDFP-ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE-----L 114
Query: 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259
SGG+R+RV + + +PS+L LDEP +GLD + + E ++A G+ +LMT H +
Sbjct: 115 SGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLA 174
Query: 260 YRIQMLLDRIIVLARGRLVYMGSPVAL 286
+ DR +VL GR++ G+P L
Sbjct: 175 QAMAT-CDR-VVLLNGRVIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 3e-17
Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 26/214 (12%)
Query: 87 IMAIMGPSGAGKSTFLDALAG--RIAQG--SLEGSVRID-GKPVTTSYMKMVSSYVMQDD 141
I A+ GPSG+GK++ ++ +AG R +G L G V +D K + K YV QD
Sbjct: 26 ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDA 85
Query: 142 QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201
+LFP TV + + + + LLD+ +SG
Sbjct: 86 RLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGT--------------LSG 131
Query: 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYR 261
GE++RV+IG ++ P LL +DEP + LD ++ ++ + +I ++ +
Sbjct: 132 GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDE 191
Query: 262 IQMLLDRIIVLARGRLV-------YMGSPVALPA 288
+ L DR++VL G++ GSP P
Sbjct: 192 VLRLADRVVVLENGKVKASGPLEEVWGSPDFPPW 225
|
Length = 352 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 4e-17
Identities = 69/255 (27%), Positives = 106/255 (41%), Gaps = 34/255 (13%)
Query: 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA 106
GL +S+S G I + + A G + ++GP+G+GKST L LA
Sbjct: 1 GLRLSRVSWSA------GGRLI------VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLA 48
Query: 107 GRIAQGSLEGSVRIDGKPVTTSYMKMVS---SYVMQDDQLFPMLTVFETFMFAAEVRLPP 163
G A G+V + G + + + + V QD LTV + R+P
Sbjct: 49 G--ALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALG---RIPH 103
Query: 164 ----SISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPS 218
+ V L + L A +SGGER+RV + + +P
Sbjct: 104 RSLWAGDSPHDAAVVDRALARTELSHLADRDM------STLSGGERQRVHVARALAQEPK 157
Query: 219 LLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
LL LDEPT+ LD + + V+++A TG V+ +H + D ++VL GR+V
Sbjct: 158 LLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNL-AASYCDHVVVLDGGRVV 216
Query: 279 YMGSP--VALPAHLA 291
G P V PA +
Sbjct: 217 AAGPPREVLTPALIR 231
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 5e-17
Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 30/244 (12%)
Query: 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDAL 105
+ +E ++L + KDG TK L +S G A++GP+GAGKST L L
Sbjct: 3 NIIEVEDLHFRY-----KDG---TKA---LKGLSLSIPEGSKTALLGPNGAGKSTLLLHL 51
Query: 106 AG-RIAQGSLEGSVRIDGKPVTTSYMKMVSS---YVMQ--DDQLFPMLTVFETFMFAAEV 159
G + Q G V++ G+ V K V S V Q DDQ+F TV++ F
Sbjct: 52 NGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS-TVWDDVAFGP-- 105
Query: 160 RLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSL 219
+ + +DE ++RV E L + + + +S G+++RV+I + P +
Sbjct: 106 -VNMGLDKDEVERRVEEALKAVRMWDFRD-----KPPYHLSYGQKKRVAIAGVLAMDPDV 159
Query: 220 LFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279
+ LDEP + LD +++E + + G V++ H + D++IVL GR++
Sbjct: 160 IVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEW-ADQVIVLKEGRVLA 218
Query: 280 MGSP 283
G
Sbjct: 219 EGDK 222
|
Length = 274 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 5e-17
Identities = 62/241 (25%), Positives = 114/241 (47%), Gaps = 27/241 (11%)
Query: 49 EFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108
+ +N+S+S + E L ++S + GE +AI+G +G+GKST L G
Sbjct: 9 KVENVSFS----------YPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL 58
Query: 109 IAQGSLEGSVRIDGKPVTTSYMKMVSSY---VMQD-DQLFPMLTVFETFMFAAEVRLPPS 164
+ G ++IDG ++ +K + + Q+ D F TV + F E +
Sbjct: 59 LK--PQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK--- 113
Query: 165 ISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224
+ + K + +L ++G+ Y+ E + +SGG+++RV+I + P ++ DE
Sbjct: 114 VPPKKMKDIIDDLAKKVGMED----YLDKEPQN-LSGGQKQRVAIASVLALNPEIIIFDE 168
Query: 225 PTSGLDSTSAYSVVEKVKDIARTGSIVLMTI-HQPSYRIQMLLDRIIVLARGRLVYMGSP 283
TS LD + + + D+ +T L++I H I L D++IV + G+L+ G P
Sbjct: 169 STSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI--LADKVIVFSEGKLIAQGKP 226
Query: 284 V 284
Sbjct: 227 K 227
|
Length = 271 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 6e-17
Identities = 73/234 (31%), Positives = 107/234 (45%), Gaps = 29/234 (12%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+EFK +SYS K +L DIS + G I I+GPSGAGKST + L
Sbjct: 4 IEFKEVSYSSFGK------------EILKDISVKFEGGAIYTIVGPSGAGKSTLIK-LIN 50
Query: 108 RIAQGSLEGSVRIDGKPVTTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS 164
R+ + EGS+ IDG + T ++ V Q LF TV + + P
Sbjct: 51 RLIDPT-EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEG-TVKDN------IEYGPM 102
Query: 165 ISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224
+ + EK V L +GL T + +SGGE +RVSI + + P +L LDE
Sbjct: 103 L-KGEKNVDVEYYLSIVGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPEVLLLDE 157
Query: 225 PTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
PTS LD TS + E + + ++ ++ I + + + D L +G LV
Sbjct: 158 PTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILV 211
|
Length = 241 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 6e-17
Identities = 62/219 (28%), Positives = 108/219 (49%), Gaps = 22/219 (10%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT-TSYMKMV 133
L+D+S GE+ I+GP+GAGK+T +D + G+ EGSV G +T ++
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD--EGSVLFGGTDLTGLPEHQIA 75
Query: 134 SSYV---MQDDQLFPMLTVFETFMFAAEVRLPPSI-------SRDEKKKRVYELLDQLGL 183
+ + Q +F LTVFE A + S+ E+K R+ E+L+ +GL
Sbjct: 76 RAGIGRKFQKPTVFENLTVFENLELA--LPRDKSVFASLFFRLSAEEKDRIEEVLETIGL 133
Query: 184 RSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKD 243
G +S G+++ + IG+ ++ P LL LDEP +G+ E +K
Sbjct: 134 ADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS 188
Query: 244 IARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
+A S+V++ H + ++ + D++ VL +G ++ GS
Sbjct: 189 LAGKHSVVVVE-HDMEF-VRSIADKVTVLHQGSVLAEGS 225
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 6e-17
Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 22/224 (9%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDAL-------AGRIAQGSLEGSVRIDG---- 122
+L +S QA G++++I+G SG+GKSTFL + AG I E ++ D
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 123 ---KPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLD 179
++ V Q L+ +TV E + A L +S+ E +R + L
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLA 138
Query: 180 QLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVE 239
++G+ Y + +SGG+++RV+I + +P ++ DEPTS LD V++
Sbjct: 139 KVGIAEKADAYPAH-----LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK 193
Query: 240 KVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
++D+A G +++ H+ + + +I L +G++ G P
Sbjct: 194 VMQDLAEEGRTMVVVTHEMGFARD-VSSHVIFLHQGKIEEEGPP 236
|
Length = 256 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 8e-17
Identities = 50/177 (28%), Positives = 74/177 (41%), Gaps = 17/177 (9%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSS---YVMQDD 141
GE + I GP+GAGK+T L LAG + + G V G+P+ + Y+
Sbjct: 28 GEALQITGPNGAGKTTLLRILAG-LLR-PDAGEVYWQGEPIQN-VRESYHQALLYLGHQP 84
Query: 142 QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201
+ LT E F ++E L Q+GL +G +S
Sbjct: 85 GIKTELTALENLHFWQR------FHGSGNAATIWEALAQVGLAGLEDLPVGQ-----LSA 133
Query: 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQP 258
G++RRV++ + L LDEP + LD + + A G IVL+T HQP
Sbjct: 134 GQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 9e-17
Identities = 65/247 (26%), Positives = 95/247 (38%), Gaps = 69/247 (27%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
LE K+L S+ K+ +L ++ +GE+ A+MGP+G+GKST + G
Sbjct: 1 LEIKDLHVSVGGKE------------ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG 48
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE------TFMFAAEVRL 161
EG + G+ +T L E F +
Sbjct: 49 HPKYEVTEGEILFKGEDITD-------------------LPPEERARLGIFLAFQYPPEI 89
Query: 162 PPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLF 221
P G+++A NEG SGGE++R I ++ +P L
Sbjct: 90 P-------------------GVKNADFLRYVNEG---FSGGEKKRNEILQLLLLEPDLAI 127
Query: 222 LDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL-----DRIIVLARGR 276
LDEP SGLD + V E + + G VL+ H Q LL DR+ VL GR
Sbjct: 128 LDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHY-----QRLLDYIKPDRVHVLYDGR 182
Query: 277 LVYMGSP 283
+V G
Sbjct: 183 IVKSGDK 189
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 1e-16
Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 16/176 (9%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV--TTSYMKMVSSYVMQDDQ 142
GE + + GP+G GK+T L LAG G VR +G + Y+
Sbjct: 26 GEALQVTGPNGIGKTTLLRILAG--LLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPG 83
Query: 143 LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202
L P L+ E F A I ++ + + L +GL +S G
Sbjct: 84 LKPELSALENLHFWAA------IHGGAQRT-IEDALAAVGLTGFEDLPAAQ-----LSAG 131
Query: 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQP 258
++RR+++ + + L LDEPT+ LD + ++ G IVL+T HQ
Sbjct: 132 QQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 1e-16
Identities = 67/225 (29%), Positives = 108/225 (48%), Gaps = 24/225 (10%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT----TSYM 130
LH++S +GEI+ ++G +GAGK+T L L G + G + DGK +T M
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG--DPRATSGRIVFDGKDITDWQTAKIM 78
Query: 131 KMVSSYVMQDDQLFPMLTVFETFM---FAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
+ + V + ++F +TV E F AE E+ K VYEL +L R
Sbjct: 79 REAVAIVPEGRRVFSRMTVEENLAMGGFFAERD-----QFQERIKWVYELFPRLHERRIQ 133
Query: 188 HTYIGNEGRRG-VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246
R G +SGGE++ ++IG ++ +P LL LDEP+ GL + + ++ +
Sbjct: 134 --------RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE 185
Query: 247 TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLA 291
G + + + Q + + L DR VL G +V + AL A+ A
Sbjct: 186 QGMTIFL-VEQNANQALKLADRGYVLENGHVVLEDTGDALLANEA 229
|
Length = 237 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.6 bits (196), Expect = 2e-16
Identities = 55/198 (27%), Positives = 101/198 (51%), Gaps = 24/198 (12%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFL---DALAGRIAQGSLEGSVRIDGKPVTT 127
E L+DI+ +I A++GPSG GKSTFL + + I+ +EG V +DGK +
Sbjct: 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNI-- 73
Query: 128 SYMKMVSSY--------VMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLD 179
Y K V V Q FPM ++++ + P I + KK + ++++
Sbjct: 74 -YDKDVDVVELRKRVGMVFQKPNPFPM-SIYDNVAYG------PRIHGIKDKKELDKIVE 125
Query: 180 QLGLRSATHTYIGNEGRR---GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYS 236
++A + ++ ++ +SGG+++R+ I I KP ++ +DEPTS LD S
Sbjct: 126 WALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLK 185
Query: 237 VVEKVKDIARTGSIVLMT 254
+ + + ++ + +IV++T
Sbjct: 186 IEDLMVELKKEYTIVIVT 203
|
Length = 251 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 2e-16
Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 27/216 (12%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK-------------PVTTSYMK 131
GE +A++GPSG+GKST L L + EG ++++G+ P +++
Sbjct: 26 GEKVALIGPSGSGKSTILRILM--TLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLR 83
Query: 132 MVSSY---VMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATH 188
+ + V Q LFP TV + A + L ++R E +KR ELLD +GL
Sbjct: 84 QMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKAD 141
Query: 189 TYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA-RT 247
+SGG+++RV+I + +P ++ DE TS LD V+ ++ +A
Sbjct: 142 HMPAQ-----LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEH 196
Query: 248 GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
+L+ H+ + + DR+ +GR+V G P
Sbjct: 197 DLTMLLVTHEMGF-AREFADRVCFFDKGRIVEQGKP 231
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-16
Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 16/224 (7%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG---KPVTT 127
+L+ IS G+ +AI+G SGAGKST L L R + GS+ IDG + VT
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTIL-RLLFRFYDVN-SGSITIDGQDIRDVTQ 332
Query: 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
++ V QD LF T+ + P + +E ++S
Sbjct: 333 QSLRRAIGIVPQDTVLF-NDTIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQSLP 386
Query: 188 HTYIGNEGRRG--VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA 245
Y G RG +SGGE++RV+I I+ P +L LDE TS LD+ + ++ +++++
Sbjct: 387 EGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS 446
Query: 246 RTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAH 289
G L+ H+ S I D IIVL GR+V G+ L A
Sbjct: 447 A-GRTTLVIAHRLSTIIDA--DEIIVLDNGRIVERGTHEELLAA 487
|
Length = 497 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-16
Identities = 66/246 (26%), Positives = 118/246 (47%), Gaps = 23/246 (9%)
Query: 48 LEFKNLSYSIMKKQKKDGVW--ITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDAL 105
L+ + L + ++ G+ ++ +IS GE + ++G SG+GKST AL
Sbjct: 276 LDVEQLQVAFPIRK---GILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLAL 332
Query: 106 AGRIAQGSLEGSVRIDGKPVTTSYMKMVSSY------VMQD--DQLFPMLTVFETFMFAA 157
I +G + DG+P+ + + V QD L P L V +
Sbjct: 333 LRLINS---QGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGL 389
Query: 158 EVRLPPSISRDEKKKRVYELLDQLGLRSAT-HTYIGNEGRRGVSGGERRRVSIGIDIIHK 216
V P++S +++++V +++++GL T H Y SGG+R+R++I +I K
Sbjct: 390 RVH-QPTLSAAQREQQVIAVMEEVGLDPETRHRYPAE-----FSGGQRQRIAIARALILK 443
Query: 217 PSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276
PSL+ LDEPTS LD T ++ +K + + + + I + ++ L ++IVL +G
Sbjct: 444 PSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGE 503
Query: 277 LVYMGS 282
+V G
Sbjct: 504 VVEQGD 509
|
Length = 529 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 3e-16
Identities = 67/258 (25%), Positives = 107/258 (41%), Gaps = 51/258 (19%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
L+ K+L S+ K+ GV +T + GEI AIMGP+G+GKST +AG
Sbjct: 1 LKIKDLHVSVEDKEILKGVNLTVKK------------GEIHAIMGPNGSGKSTLSKTIAG 48
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQ-----LF---------PMLTVFETF 153
+ G++ G+ + ++ D+ LF P ++ F
Sbjct: 49 HPSYEVTSGTILFKGQDLLE----------LEPDERARAGLFLAFQYPEEIPGVSN-LEF 97
Query: 154 MFAA-----EVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVS 208
+ +A R + + K + L LG+ NE G SGGE++R
Sbjct: 98 LRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNE---GFSGGEKKRNE 154
Query: 209 IGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA-RTGSIVLMTIHQPSYRIQMLL- 266
I + +P L LDE SGLD + V E + + S +++T +Q R+ +
Sbjct: 155 ILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ---RLLNYIK 211
Query: 267 -DRIIVLARGRLVYMGSP 283
D + VL GR+V G
Sbjct: 212 PDYVHVLLDGRIVKSGDV 229
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 4e-16
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 33/221 (14%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV---TTSYMK 131
L +SG+ GEI+ ++GP+GAGKST L +AG S GS++ G+P+ + + +
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGSGSIQFAGQPLEAWSATELA 71
Query: 132 MVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELL---DQLGLRSATH 188
+Y+ Q + V+ P +R E V L D+LG RS
Sbjct: 72 RHRAYLSQQQTPPFAMPVWHYLTLHQ-----PDKTRTELLNDVAGALALDDKLG-RSTNQ 125
Query: 189 TYIGNEGRRGVSGGERRRVSIGIDIIH-----KPS--LLFLDEPTSGLDSTSAYSVVEKV 241
+SGGE +RV + ++ P+ LL LDEP + LD ++ +
Sbjct: 126 ----------LSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLL 175
Query: 242 KDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
+ + G ++M+ H ++ ++ R +L RG+L+ G
Sbjct: 176 SALCQQGLAIVMSSHDLNHTLRH-AHRAWLLKRGKLLASGR 215
|
Length = 248 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 4e-16
Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 29/221 (13%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDAL-------AGR--IAQGSLEGSVRIDGKPV 125
L DI+ +GE + ++GPSGAGKS+ L L +G IA + S K +
Sbjct: 18 LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAI 77
Query: 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-- 183
+ V Q L+P LTV + + A R+ +S+D+ R +LL++L L
Sbjct: 78 RELRRNV--GMVFQQYNLWPHLTVQQN-LIEAPCRVL-GLSKDQALARAEKLLERLRLKP 133
Query: 184 ---RSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240
R H +SGG+++RV+I ++ +P +L DEPT+ LD +V
Sbjct: 134 YADRFPLH----------LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSI 183
Query: 241 VKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
++++A TG ++ H+ + R++ + G +V G
Sbjct: 184 IRELAETGITQVIVTHEVEV-ARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 5e-16
Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 20/223 (8%)
Query: 66 VWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG--RIAQGSLEGSVRIDGK 123
+ A +L ++S GE + ++G SG GKST L G + AQG+ V G+
Sbjct: 18 FGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGT----VSFRGQ 73
Query: 124 PVTT---SYMKMVS---SYVMQD--DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVY 175
+ + V QD + P +TV + + +R S+ E+K R+
Sbjct: 74 DLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQ--IIGEPLRHLTSLDESEQKARIA 131
Query: 176 ELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAY 235
ELLD +GLRS ++ R +SGG+ +R++I + KP L+ LDE S LD
Sbjct: 132 ELLDMVGLRSE----DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQA 187
Query: 236 SVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
++E ++ + + + I +Q R+ V+ +G++V
Sbjct: 188 VILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 5e-16
Identities = 65/220 (29%), Positives = 98/220 (44%), Gaps = 51/220 (23%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSVRIDG----------KPVTTSYM 130
GE + ++GPSG GK+T L +AG E G + +DG + V T
Sbjct: 40 GEFLTLLGPSGCGKTTVLRLIAG------FETPDSGRIMLDGQDITHVPAENRHVNT--- 90
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELL-----DQLGLRS 185
V Q LFP +TVFE F ++ P+ E RV E L ++ R
Sbjct: 91 ------VFQSYALFPHMTVFENVAFGLRMQKTPA---AEITPRVMEALRMVQLEEFAQRK 141
Query: 186 ATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA 245
+SGG+++RV+I +++KP +L LDE S LD + ++K +
Sbjct: 142 PHQ----------LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQ 191
Query: 246 RTGSI--VLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
R I V +T H + M DRI+V+ GR+ G+P
Sbjct: 192 RKLGITFVFVT-HDQEEALTM-SDRIVVMRDGRIEQDGTP 229
|
Length = 375 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (192), Expect = 6e-16
Identities = 58/187 (31%), Positives = 104/187 (55%), Gaps = 13/187 (6%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFL---DALAGRIAQGSLEGSVRIDGKPVTTS--- 128
L DI+ Q + +I A++G SG GKSTFL + + +IA+ ++G V I+GK V
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAK--IDGLVEIEGKDVKNQDVV 75
Query: 129 YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSI-SRDEKKKRVYELLDQLGLRSAT 187
++ V Q +F + +++E +A +L I ++DE++ V + L ++GL
Sbjct: 76 ALRKNVGMVFQQPNVF-VKSIYENISYAP--KLHGMIKNKDEEEALVVDCLQKVGLFEEV 132
Query: 188 HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART 247
+ + +SGG+++R+ I + KP LL LDEPTS LD S+ + E +K+++
Sbjct: 133 KDKL-KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHN 191
Query: 248 GSIVLMT 254
S++++T
Sbjct: 192 LSMIMVT 198
|
Length = 246 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 6e-16
Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT----SYMKMVSSYVMQD 140
G+ +A++G SG GKST + +L R G + +DG + + V Q+
Sbjct: 29 GKTVALVGSSGCGKSTVV-SLLERF-YDPTSGEILLDGVDIRDLNLRWLRSQIG-LVSQE 85
Query: 141 DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQL-GLRSATHTYIGNEGRRGV 199
LF T+ E + + E+ + + D + L T +G G + +
Sbjct: 86 PVLFDG-TIAENIRYGKP---DATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQ-L 140
Query: 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259
SGG+++R++I ++ P +L LDE TS LD+ S V E + D A G ++ H+ S
Sbjct: 141 SGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEAL-DRAMKGRTTIVIAHRLS 199
Query: 260 YRIQMLLDRIIVLARGRLVYMGSPVAL 286
I+ D I VL G++V G+ L
Sbjct: 200 -TIRN-ADLIAVLQNGQVVEQGTHDEL 224
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 77.1 bits (191), Expect = 6e-16
Identities = 60/227 (26%), Positives = 107/227 (47%), Gaps = 43/227 (18%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT------- 127
L +IS GE + I+G +G+GKS+ L AL R+ + S GS+ IDG ++
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELS-SGSILIDGVDISKIGLHDLR 77
Query: 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRL---PPSISRDEKKKRVYELLDQLGLR 184
S + ++ QD +F+ +R P DE +++ L+++GL+
Sbjct: 78 SRISIIP----QD-----------PVLFSGTIRSNLDPFGEYSDE---ELWQALERVGLK 119
Query: 185 SATHTYIG------NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVV 238
+ G EG +S G+R+ + + ++ K +L LDE T+ +D + +
Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 179
Query: 239 EKVKDIARTGSIVLMTIHQPSYRIQMLL--DRIIVLARGRLVYMGSP 283
+ +++ A VL H R+ ++ DRI+VL +GR+V SP
Sbjct: 180 KTIRE-AFKDCTVLTIAH----RLDTIIDSDRILVLDKGRVVEFDSP 221
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (191), Expect = 8e-16
Identities = 59/218 (27%), Positives = 108/218 (49%), Gaps = 16/218 (7%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK---------P 124
+L DI+ + I IMGPSG+GKST L L I + +++DGK
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE--IYDSKIKVDGKVLYFGKDIFQ 82
Query: 125 VTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR 184
+ ++ V Q FP L++++ + ++ + E KK V E L ++GL
Sbjct: 83 IDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKVGLW 140
Query: 185 SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI 244
+ + N +SGG+++R++I + KP +L +DEPTS +D ++ ++ + + ++
Sbjct: 141 KEVYDRL-NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL 199
Query: 245 ARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
+IV+++ H P ++ + D + L G LV GS
Sbjct: 200 KNEIAIVIVS-HNPQ-QVARVADYVAFLYNGELVEWGS 235
|
Length = 257 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 8e-16
Identities = 57/221 (25%), Positives = 91/221 (41%), Gaps = 26/221 (11%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMV 133
+L + G ++ ++GP+GAGK+T L A+ G + + G+V + G V +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA--GTVLVAGDDVEALSARAA 75
Query: 134 SSYVM---QDDQL---FPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL---- 183
S V QD L F + V E R D V +++ G+
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA--VERAMERTGVAQFA 133
Query: 184 -RSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVK 242
R T +SGGER+RV + + +L LDEPT+ LD +E V+
Sbjct: 134 DRPVT----------SLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVR 183
Query: 243 DIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
+ G + IH + D +++LA GR+ G P
Sbjct: 184 RLVDDGKTAVAAIHDLDLAAR-YCDELVLLADGRVRAAGPP 223
|
Length = 402 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 8e-16
Identities = 61/237 (25%), Positives = 105/237 (44%), Gaps = 24/237 (10%)
Query: 50 FKNLSYSIMK--KQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+ SYS+ K K G E + L DIS + +GE + I+G +GAGKST L +AG
Sbjct: 16 YHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAG 75
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLF-PMLTVFETFMFAAEVRLPPSIS 166
S G V++ GK + +++ F P LT E L ++
Sbjct: 76 IYKPTS--GKVKVTGKV----------APLIELGAGFDPELTGRENIYLRG---LILGLT 120
Query: 167 RDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPT 226
R E ++V E+++ L +I ++ + S G R++ + +P +L LDE
Sbjct: 121 RKEIDEKVDEIIEFAEL----GDFI-DQPVKTYSSGMYARLAFSVATHVEPDILLLDEVL 175
Query: 227 SGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
+ D+ +E++ ++ +++ H I+ DR I L G++ GSP
Sbjct: 176 AVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGA-IKQYCDRAIWLEHGQIRMEGSP 231
|
Length = 249 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 8e-16
Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 18/176 (10%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSS--YVMQDDQ 142
GE + + GP+G+GK+T L LAG L G V ++G P+ + Y+
Sbjct: 26 GEALQVTGPNGSGKTTLLRILAG--LSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPG 83
Query: 143 LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202
+ L+V E F D ++V E L ++GL + +S G
Sbjct: 84 IKTTLSVLENLRFWH---------ADHSDEQVEEALARVGLNGFEDRPVAQ-----LSAG 129
Query: 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQP 258
++RRV++ ++ L LDEPT+ LD E + G +V++T HQ
Sbjct: 130 QQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 1e-15
Identities = 56/236 (23%), Positives = 109/236 (46%), Gaps = 25/236 (10%)
Query: 64 DGVWITKE--AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG-RIAQGSLEGSVRI 120
+ + + + D+S + GEI+ I G +G G+S ++A++G R G + +
Sbjct: 261 EDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPAS---GRILL 317
Query: 121 DGKPVTTSY-----MKMVSSYVMQDDQ---LFPMLTVFETFMFAAEVRLPPS----ISRD 168
+GK V ++ +YV +D L L++ E + + P S + R
Sbjct: 318 NGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRR 377
Query: 169 EKKKRVYELLDQLGLR-SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTS 227
+K EL+++ +R + + +SGG ++++ + ++ +P LL +PT
Sbjct: 378 AIRKFARELIEEFDVRAPSPDAPARS-----LSGGNQQKLILARELARRPDLLIAAQPTR 432
Query: 228 GLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
GLD + + E++ ++ G VL+ I + I L DRI V+ GR+V + P
Sbjct: 433 GLDVGAIEFIHERLLELRDAGKAVLL-ISEDLDEILELSDRIAVIYEGRIVGIVPP 487
|
Length = 501 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 1e-15
Identities = 62/205 (30%), Positives = 112/205 (54%), Gaps = 13/205 (6%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS-SYVMQDDQ 142
+G ++ ++GPSG GK+T L +AG + EG + IDG+ VT ++ V Q
Sbjct: 31 QGTMVTLLGPSGCGKTTVLRLVAG--LEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYA 88
Query: 143 LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202
LFP +++ E + ++ + ++E+K+RV E L+ + L Y+ +SGG
Sbjct: 89 LFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYVDQ-----ISGG 140
Query: 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIV-LMTIHQPSYR 261
+++RV++ +I KP +L DEP S LD+ S+ EK++++ + +I L H S
Sbjct: 141 QQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEA 200
Query: 262 IQMLLDRIIVLARGRLVYMGSPVAL 286
+ D +IV+ +G+++ +GSP L
Sbjct: 201 FA-VSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 1e-15
Identities = 64/215 (29%), Positives = 101/215 (46%), Gaps = 19/215 (8%)
Query: 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS--YMKMVS 134
+S GE ++GP+GAGKST + G + G + + G PV +
Sbjct: 59 GLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARI 116
Query: 135 SYVMQDDQLFPMLTVFETFM-FAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGN 193
V Q D L TV E + F + S E + + LL+ L S + +
Sbjct: 117 GVVPQFDNLDLEFTVRENLLVFGRYFGM----STREIEAVIPSLLEFARLESKADARVSD 172
Query: 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLM 253
+SGG +RR+++ +I+ P LL LDEPT+GLD + + + E+++ + G +L+
Sbjct: 173 -----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILL 227
Query: 254 TIH--QPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286
T H + + R L DR+ VL GR + G P AL
Sbjct: 228 TTHFMEEAER---LCDRLCVLEAGRKIAEGRPHAL 259
|
Length = 340 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 2e-15
Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 28/225 (12%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT---SYMK 131
L ++ GE +A++GPSGAGKST L R G + +DG + + ++
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLL-RFYDPQ-SGRILLDGVDLRQLDPAELR 413
Query: 132 MVSSYVMQDDQLFPMLTVFETFMF------AAEVRLPPSISRDEKKKRVYELLDQLGLRS 185
+ V QD LF +V E + EV + +E + L
Sbjct: 414 ARMALVPQDPVLFAA-SVMENIRYGRPDATDEEVE------AAARAAHAHEFI--SALPE 464
Query: 186 ATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA 245
TY+G G +SGG+R+R++I I+ +L LDE TS LD+ S +V++ +
Sbjct: 465 GYDTYLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESE-QLVQQALETL 522
Query: 246 RTGSIVLMTIHQPSYRIQMLL--DRIIVLARGRLVYMGSPVALPA 288
G L+ H R+ +L DRI+V+ +GR+V G+ L A
Sbjct: 523 MKGRTTLIIAH----RLATVLKADRIVVMDQGRIVAQGTHAELIA 563
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (187), Expect = 2e-15
Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 16/216 (7%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALA---GRIAQGSLEGSVRIDGKPVTTSYMK 131
LH IS E+ A++GPSG GKSTFL L I + G ++ +G+ + S M
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 132 MVS-----SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA 186
+V V Q FP +V++ + +++ ++ +RV E L Q +
Sbjct: 80 LVELRKEVGMVFQQPTPFP-FSVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAIWKE 136
Query: 187 THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246
T + + + SGG+++R+ I + +P ++ LDEPTS LD S+ + E + ++
Sbjct: 137 TKDNL-DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH 195
Query: 247 TGSIVLMTIH-QPSYRIQMLLDRIIVLARGRLVYMG 281
+ +++T + Q + RI D+ L G L+ G
Sbjct: 196 QYTFIMVTHNLQQAGRIS---DQTAFLMNGDLIEAG 228
|
Length = 251 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 2e-15
Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 38/227 (16%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR----IAQGSLEGSVRIDGKPVTTSYM 130
L I+ ++ A++GPSG GKSTFL L R I +EG V +DG+ + S +
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTL-NRMNDLIPSVKIEGEVLLDGQDIYKSDI 77
Query: 131 KMVS-----SYVMQDDQLFPMLTVFETFMFAAEVRLPPSIS--RDEKKKRVYELLDQLGL 183
+ V Q FPM ++++ + P +D+KK LD++
Sbjct: 78 DVNQLRKRVGMVFQQPNPFPM-SIYDNVAYG------PRTHGIKDKKK------LDEIVE 124
Query: 184 RSATHTYIGNEGRR-------GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYS 236
+S + +E + G+SGG+++R+ I + +P +L +DEPTS LD S
Sbjct: 125 KSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLK 184
Query: 237 VVEKVKDIARTGSIVLMTIH--QPSYRIQMLLDRIIVLARGRLVYMG 281
+ E ++++ + +IV++T H Q + RI D+ G +V G
Sbjct: 185 IEELIQELKKDYTIVIVT-HNMQQASRIS---DKTAFFLNGEIVEFG 227
|
Length = 250 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 2e-15
Identities = 78/270 (28%), Positives = 134/270 (49%), Gaps = 40/270 (14%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+E KNL++ K K+D +E Y L+D+S +GE ++I+G +G+GKST +
Sbjct: 5 IEVKNLTF----KYKED-----QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTV----- 50
Query: 108 RIAQGSLE---GSVRIDGKPVTTSY---MKMVSSYVMQD-DQLFPMLTVFETFMFAAEVR 160
R+ G LE G + IDG +T ++ V Q+ D F TV + F E +
Sbjct: 51 RLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK 110
Query: 161 LPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLL 220
I +E K+RV E L+ +G++ + E R +SGG+++RV+I + +P ++
Sbjct: 111 ---GIPHEEMKERVNEALELVGMQD----FKEREPAR-LSGGQKQRVAIAGAVAMRPKII 162
Query: 221 FLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280
LDE TS LD +++ +K I + +++I + L DR++V+ G++
Sbjct: 163 ILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVEST 221
Query: 281 GSPVALPAHLAGFGRTVPDGENSLEYLLDV 310
+P L F R G + L+ LD+
Sbjct: 222 STPREL------FSR----GNDLLQLGLDI 241
|
Length = 279 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 3e-15
Identities = 75/287 (26%), Positives = 129/287 (44%), Gaps = 54/287 (18%)
Query: 19 MDKSLAAKNNNNKDAVVAAAGLKMIPGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDI 78
M K L N + D ++ KNL +KQ E L++I
Sbjct: 6 MKKKLKVPNPLSDDIILRV-------------KNLYCVFDEKQ-------ENELVALNNI 45
Query: 79 SGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRI---------DGKPVTTSY 129
S + +I I+G SG+GKST + G I S G++++ + + T+
Sbjct: 46 SYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYIGDKKNNHELITNP 103
Query: 130 ----------MKMVSSYVMQ--DDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYEL 177
++ S V Q + QLF T+ + MF V L + + E KK
Sbjct: 104 YSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGP-VAL--GVKKSEAKKLAKFY 159
Query: 178 LDQLGLRSATHTYIGNEGRRGVSGGERRRVSI-GIDIIHKPSLLFLDEPTSGLDSTSAYS 236
L+++GL +Y+ G+SGG++RRV+I GI I +P +L DEPT+GLD +
Sbjct: 160 LNKMGLDD---SYL-ERSPFGLSGGQKRRVAIAGILAI-QPEILIFDEPTAGLDPKGEHE 214
Query: 237 VVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
+++ + D V + H + ++ + D +IV+ +G+++ G+P
Sbjct: 215 MMQLILDAKANNKTVFVITHTMEHVLE-VADEVIVMDKGKILKTGTP 260
|
Length = 320 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 3e-15
Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 31/212 (14%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG--RIAQGSLEGSVRIDGKPV---TTSY 129
L ++S GE +A+ GPSGAGKST L +L G + VR +G V S
Sbjct: 24 LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRIL--VRHEGAWVDLAQASP 81
Query: 130 MKMVS------SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL 183
+++ YV Q ++ P ++ E R + R+ + R ELL +L +
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNI 138
Query: 184 RS-----ATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVV 238
T+ SGGE++RV+I I +L LDEPT+ LD+ + VV
Sbjct: 139 PERLWHLPPATF---------SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVV 189
Query: 239 EKVKDIARTGSIVLMTIHQPSYRIQMLLDRII 270
E + + G+ ++ H R +++ DR++
Sbjct: 190 ELIAEAKARGAALIGIFHDEEVR-ELVADRVM 220
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 4e-15
Identities = 59/208 (28%), Positives = 103/208 (49%), Gaps = 22/208 (10%)
Query: 87 IMAIMGPSGAGKSTFLDALAGRI---AQGSLEGSVRIDGKPVTTSYMKMVS-----SYVM 138
+ A+MGPSG GKST L + + +EG VR+ G+ + + + + V
Sbjct: 32 VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVF 91
Query: 139 QDDQLFPMLTVFETFMFAAEVRLPPSI-SRDEKKKRVYELLDQLGL----RSATHTYIGN 193
Q FP LT+++ A V+L + S+ E +RV L + L + + Y N
Sbjct: 92 QYPNPFPHLTIYDNV--AIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSN 149
Query: 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLM 253
+SGG+R+R+ I + KP +L +DEPT+ +D + E + ++ + +IVL+
Sbjct: 150 -----LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLV 204
Query: 254 TIHQPSYRIQMLLDRIIVLARGRLVYMG 281
T H P+ + + D + L G+L+ +G
Sbjct: 205 T-HSPA-QAARVSDYVAFLYLGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 4e-15
Identities = 78/242 (32%), Positives = 120/242 (49%), Gaps = 34/242 (14%)
Query: 64 DGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG--RIAQGSLE-GSVRI 120
V I+K+ L DI GE + +GPSG GKST L +AG I G L G R+
Sbjct: 14 GDVVISKDINL--DIH----EGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRM 67
Query: 121 DGKPVTTSYMKMV-SSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLD 179
+ P + MV SY L+P L+V E F ++ ++E +RV ++ +
Sbjct: 68 NDVPPAERGVGMVFQSYA-----LYPHLSVAENMSFGLKL---AGAKKEEINQRVNQVAE 119
Query: 180 QLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSV-- 237
L L ++ + + +SGG+R+RV+IG ++ +PS+ LDEP S LD +A V
Sbjct: 120 VLQL-----AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD--AALRVQM 172
Query: 238 -VEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL---PAH--LA 291
+E + R G ++ H L D+I+VL GR+ +G P+ L PA+ +A
Sbjct: 173 RIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVA 231
Query: 292 GF 293
GF
Sbjct: 232 GF 233
|
Length = 369 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 5e-15
Identities = 58/190 (30%), Positives = 90/190 (47%), Gaps = 16/190 (8%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFL---DALAGRIAQGSLEGSVRIDG-----KPVT 126
L IS + ++A +GPSG GKSTFL + + I LEG +RIDG K V
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEK--KKRVYELLDQLGLR 184
++ V Q FP ++FE + V + +D ++RV E L L
Sbjct: 79 VDELRKNVGMVFQRPNPFPK-SIFENVAYGLRV----NGVKDNAFIRQRVEETLKGAALW 133
Query: 185 SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI 244
+ E +SGG+++R+ I + PS+L +DEP S LD S V E + ++
Sbjct: 134 DEVKDKL-KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL 192
Query: 245 ARTGSIVLMT 254
+ +IV++T
Sbjct: 193 KKDYTIVIVT 202
|
Length = 250 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 6e-15
Identities = 62/237 (26%), Positives = 115/237 (48%), Gaps = 35/237 (14%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT--- 127
E +L +S QA G++++I+G SG+GKSTFL + + EGS+ ++G+ +
Sbjct: 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCI--NFLEKPSEGSIVVNGQTINLVRD 74
Query: 128 -------------SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRV 174
++ + V Q L+ +TV E M A L +S+ E ++R
Sbjct: 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERA 132
Query: 175 YELLDQLGLRSATHTYIGNEGRRG-----VSGGERRRVSIGIDIIHKPSLLFLDEPTSGL 229
+ L ++G+ +E +G +SGG+++RVSI + +P +L DEPTS L
Sbjct: 133 VKYLAKVGI---------DERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSAL 183
Query: 230 DSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286
D V+ ++ +A G +++ H+ + + + +I L +G++ G+P L
Sbjct: 184 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFLHQGKIEEEGAPEQL 239
|
Length = 257 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 6e-15
Identities = 60/193 (31%), Positives = 96/193 (49%), Gaps = 18/193 (9%)
Query: 69 TKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT- 127
+A +L++IS GE I GPSG GKST L +A I+ S G++ +G+ ++T
Sbjct: 17 AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTS--GTLLFEGEDISTL 74
Query: 128 ---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR 184
Y + V SY Q LF TV++ +F ++R + D + L++ L
Sbjct: 75 KPEIYRQQV-SYCAQTPTLFGD-TVYDNLIFPWQIR---NQQPDPAIFL--DDLERFALP 127
Query: 185 SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI 244
T E +SGGE++R+S+ ++ P +L LDE TS LD ++ ++V E +
Sbjct: 128 DTILTKNIAE----LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRY 183
Query: 245 ARTGSI-VLMTIH 256
R +I VL H
Sbjct: 184 VREQNIAVLWVTH 196
|
Length = 225 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 8e-15
Identities = 61/215 (28%), Positives = 101/215 (46%), Gaps = 25/215 (11%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMV 133
+L IS GE++AI+G SG+GKST ++ L G + + + G+ R+ G+ V T +
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNIL-GCLDKPT-SGTYRVAGQDVATLDADAL 80
Query: 134 SS-------YVMQDDQLFPMLTVFETFMFAAEVRLPP---SISRDEKKKRVYELLDQLGL 183
+ ++ Q L LT A V +P + R ++ R ELL +LGL
Sbjct: 81 AQLRREHFGFIFQRYHLLSHLTA------AQNVEVPAVYAGLERKQRLLRAQELLQRLGL 134
Query: 184 RSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKD 243
+SGG+++RVSI +++ ++ DEPT LDS S V+ +
Sbjct: 135 EDRVEYQPSQ-----LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQ 189
Query: 244 IARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
+ G V++ H P Q +R+I + G +V
Sbjct: 190 LRDRGHTVIIVTHDPQVAAQA--ERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 9e-15
Identities = 49/184 (26%), Positives = 72/184 (39%), Gaps = 43/184 (23%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMV 133
LL ++S GE + ++G +GAGKST L LAG + S G V K + Y+
Sbjct: 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS--GEVTRP-KGLRVGYLS-- 72
Query: 134 SSYVMQDDQLFPMLTVFETFM------FAAEVRLPPSISRDEKKK--------------- 172
Q+ L P TV + + L + +
Sbjct: 73 -----QEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELD 127
Query: 173 ------RVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPT 226
R E L LG + + +SGG RRRV++ ++ +P LL LDEPT
Sbjct: 128 GWTLEARAEEALLGLGF-PDEDRPVSS-----LSGGWRRRVALARALLEEPDLLLLDEPT 181
Query: 227 SGLD 230
+ LD
Sbjct: 182 NHLD 185
|
Length = 530 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 9e-15
Identities = 74/251 (29%), Positives = 114/251 (45%), Gaps = 51/251 (20%)
Query: 49 EFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108
EF ++S+S + GV D+S +A G+ +AI+GP+GAGKST + L R
Sbjct: 336 EFDDVSFSY--DNSRQGV---------EDVSFEAKPGQTVAIVGPTGAGKSTLI-NLLQR 383
Query: 109 IAQGSLEGSVRIDG---KPVTTSYMKMVSSYVMQDDQLFPM-----LTVFETFMFAAEVR 160
G + IDG + VT + ++ + V QD LF + V E+R
Sbjct: 384 -VFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMR 442
Query: 161 LPPSISRD----EKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHK 216
++ E+K Y+ T +G GR+ +SGGER+R++I ++
Sbjct: 443 AAAERAQAHDFIERKPDGYD------------TVVGERGRQ-LSGGERQRLAIARALLKD 489
Query: 217 PSLLFLDEPTSGLDSTSAYSVVEKVKDI--ARTGSIV---LMTIHQPSYRIQMLLDRIIV 271
P +L LDE TS LD + V + ++ RT I+ L T+ DRI+V
Sbjct: 490 PPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNA--------DRILV 541
Query: 272 LARGRLVYMGS 282
GR+V GS
Sbjct: 542 FDNGRVVESGS 552
|
Length = 588 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 1e-14
Identities = 74/265 (27%), Positives = 125/265 (47%), Gaps = 43/265 (16%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
L +NLS + ++ T EA + IS GE +A++G SG+GKS ++ G
Sbjct: 7 LSIRNLSVAFHQEGG------TVEA--VKGISFDIEAGETLALVGESGSGKSVTALSILG 58
Query: 108 RIAQGS---LEGSVRIDGKP---VTTSYMKMVS----SYVMQD--DQLFPMLTVFETFMF 155
+ + GS+ DG+ + ++ V + Q+ L P+ T+ +
Sbjct: 59 LLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQL-- 116
Query: 156 AAEV-RLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG-----VSGGERRRVSI 209
AEV RL +SR + R ELL+ +G+ E R +SGG+R+RV I
Sbjct: 117 -AEVLRLHRGLSRAAARARALELLELVGIPEP-------EKRLDAYPHELSGGQRQRVMI 168
Query: 210 GIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI-ARTG-SIVLMTIHQPSYRIQMLLD 267
+ + ++P LL DEPT+ LD T +++ +K++ A G +I+ +T H ++ D
Sbjct: 169 AMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFIT-HDLGI-VRKFAD 226
Query: 268 RIIVLARGRLVYMGSPVAL---PAH 289
R+ V+ G +V G+ L P H
Sbjct: 227 RVYVMQHGEIVETGTTETLFAAPQH 251
|
Length = 534 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 20/192 (10%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFL-------DALAGRIAQGSLEGSVRIDGKPVTT 127
L +I+ + ++ A +GPSG GKST L + + A EG + +DG+ + T
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRA----EGEILLDGENILT 84
Query: 128 SYMKMV-----SSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLG 182
+ V Q FPM ++++ F VRL +SR E +RV L +
Sbjct: 85 PKQDIALLRAKVGMVFQKPTPFPM-SIYDNIAFG--VRLFEKLSRAEMDERVEWALTKAA 141
Query: 183 LRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVK 242
L + + G +SGG+++R+ I I +P +L LDEP S LD S + E +
Sbjct: 142 LWNEVKDKLHQSGY-SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELIT 200
Query: 243 DIARTGSIVLMT 254
++ + ++V++T
Sbjct: 201 ELKQDYTVVIVT 212
|
Length = 260 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 1e-14
Identities = 74/250 (29%), Positives = 118/250 (47%), Gaps = 47/250 (18%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
L N+S++ + + +L +S Q GE +A++G +G GKST L L
Sbjct: 339 LTLNNVSFTYPDQPQP----------VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT- 387
Query: 108 RIAQGSLEGSVRIDGKPVTT-------SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVR 160
R +G + ++G+P+ + +VS V LF T+ + + AA
Sbjct: 388 RAWDPQ-QGEILLNGQPIADYSEAALRQAISVVSQRV----HLFSA-TLRDNLLLAA--- 438
Query: 161 LPPSISRDEKKKRVYELLDQLGLRSATH------TYIGNEGRRGVSGGERRRVSIGIDII 214
P+ S DE V L Q+GL ++G EG R +SGGE+RR+ I ++
Sbjct: 439 --PNAS-DEALIEV---LQQVGLEKLLEDDKGLNAWLG-EGGRQLSGGEQRRLGIARALL 491
Query: 215 HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQML--LDRIIVL 272
H LL LDEPT GLD+ + ++E + + A+ VLM H R+ L DRI V+
Sbjct: 492 HDAPLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLMITH----RLTGLEQFDRICVM 546
Query: 273 ARGRLVYMGS 282
G+++ G+
Sbjct: 547 DNGQIIEQGT 556
|
Length = 574 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 2e-14
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMK-M 132
+L+DIS G+++A++GPSG+GK+T L +AG Q S G +R G V+ + +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTS--GHIRFHGTDVSRLHARDR 74
Query: 133 VSSYVMQDDQLFPMLTVFETFMFAAEVRLP----PSISRDEKKKRVYELLDQLGLRSATH 188
+V Q LF +TVF+ F V LP P + K +V +LL+ + L
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAFGLTV-LPRRERP--NAAAIKAKVTQLLEMVQL----- 126
Query: 189 TYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDS 231
++ + +SGG+++RV++ + +P +L LDEP LD+
Sbjct: 127 AHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDA 169
|
Length = 353 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 69/260 (26%), Positives = 108/260 (41%), Gaps = 57/260 (21%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
LE KNL S+ E +L ++ +GEI AIMGP+G+GKST +AG
Sbjct: 8 LEIKNLHASV------------NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISR 167
A LEG + G+ + + + L +F F + E+ P +S
Sbjct: 56 HPAYKILEGDILFKGESILDLEPEERAH-----------LGIFLAFQYPIEI---PGVSN 101
Query: 168 DE------KKKRV------------YELL-DQLGLRSATHTYIGNEGRRGVSGGERRRVS 208
+ KR E++ ++L L +++ G SGGE++R
Sbjct: 102 ADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNE 161
Query: 209 IGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG-SIVLMTIHQPSYRIQMLLD 267
I + L LDE SGLD + + E + + + SI+L+T H Y Q LLD
Sbjct: 162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILIT-H---Y--QRLLD 215
Query: 268 RII-----VLARGRLVYMGS 282
I V+ G+++ G
Sbjct: 216 YIKPDYVHVMQNGKIIKTGD 235
|
Length = 252 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (181), Expect = 2e-14
Identities = 60/216 (27%), Positives = 105/216 (48%), Gaps = 16/216 (7%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY----M 130
L DI + +G A++G +G+GKST L L G + EG V + V+++ +
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVSSTSKQKEI 79
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS---ISRDEKKKRVYELLDQLGLRSAT 187
K V V Q FP +FE + +V P I +++ +K E L+ +GL
Sbjct: 80 KPVRKKVGVVFQ-FPESQLFEETVLK-DVAFGPQNFGIPKEKAEKIAAEKLEMVGLADE- 136
Query: 188 HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART 247
+ +SGG+ RRV+I + +P +L LDEPT+GLD + +++ + I ++
Sbjct: 137 ---FWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS 193
Query: 248 GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
G V++ H + D + +L +G ++ G+P
Sbjct: 194 GQTVVLVTHLMD-DVADYADYVYLLEKGHIISCGTP 228
|
Length = 288 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 3e-14
Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 23/203 (11%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT------TSYMKMVSSYVM 138
GE+ + G SGAGKST L + G I + S G + G +T +++ +
Sbjct: 28 GEMAFLTGHSGAGKSTLLKLICG-IERPS-AGKIWFSGHDITRLKNREVPFLRRQIGMIF 85
Query: 139 QDDQLFPMLTVFETFMFAAEVRLPPSI---SRDEKKKRVYELLDQLGLRSATHTYIGNEG 195
QD L TV++ V +P I S D+ ++RV LD++GL +
Sbjct: 86 QDHHLLMDRTVYDN------VAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQ-- 137
Query: 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTI 255
+SGGE++RV I +++KP++L DEPT LD + ++ ++ R G VLM
Sbjct: 138 ---LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMAT 194
Query: 256 HQPSYRIQMLLDRIIVLARGRLV 278
H I R++ L+ G L
Sbjct: 195 HDIGL-ISRRSYRMLTLSDGHLH 216
|
Length = 222 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 3e-14
Identities = 71/251 (28%), Positives = 126/251 (50%), Gaps = 42/251 (16%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
++ KN+SY ++ + E L D++ + +GE + I+G +G+GKST +
Sbjct: 5 IKCKNVSYKYESNEE------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNA 58
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMV------SSYVMQ--DDQLFPMLTVFETFMFAAE- 158
+ EG V +DG + TS + + + V Q D+Q+ + V E F E
Sbjct: 59 LLIPS--EGKVYVDG--LDTSDEENLWDIRNKAGMVFQNPDNQIVATI-VEEDVAFGPEN 113
Query: 159 VRLPPSISRDEKKKRVYELLDQLGL----RSATHTYIGNEGRRGVSGGERRRVSIGIDII 214
+ +PP +E ++RV E L ++G+ R A H +SGG+++RV+I +
Sbjct: 114 LGIPP----EEIRERVDESLKKVGMYEYRRHAPHL---------LSGGQKQRVAIAGILA 160
Query: 215 HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG--SIVLMTIHQPSYRIQMLLDRIIVL 272
+P + DEPT+ LD + VV +K++ + +I+L+T H ++ DRIIV+
Sbjct: 161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILIT-HYMEEAVEA--DRIIVM 217
Query: 273 ARGRLVYMGSP 283
G++V G+P
Sbjct: 218 DSGKVVMEGTP 228
|
Length = 280 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 3e-14
Identities = 66/240 (27%), Positives = 105/240 (43%), Gaps = 28/240 (11%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRI------DGKPV-- 125
+L D+S + G + A++G +GAGKST L ALAG + G R+ +G+P+
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 126 --TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL 183
++ + F + E + R P + R E+ Q
Sbjct: 76 IDAPRLARLRAVLPQAAQPAFA-FSAREIVLLG---RYPHARRAGALTHRDGEIAWQALA 131
Query: 184 RSATHTYIGNEGRRGVSGGERRRVSIGI---------DIIHKPSLLFLDEPTSGLDSTSA 234
+ +G + +SGGE RV D P L LDEPT+ LD
Sbjct: 132 LAGATALVGRD-VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQ 190
Query: 235 YSVVEKVKDIARTGSI-VLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP--VALPAHLA 291
+ +++ V+ +AR ++ VL +H P+ + DRI +LA G +V G+P V PAH+A
Sbjct: 191 HRLLDTVRRLARDWNLGVLAIVHDPNLAARH-ADRIAMLADGAIVAHGAPADVLTPAHIA 249
|
Length = 272 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 3e-14
Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 31/195 (15%)
Query: 84 RGEIMAIMGPSGAGKSTFLDAL--AGRIAQGS-LEGSVRIDGK--------PVTTSYMKM 132
RG + A++GPSG GK+TFL A+ + G+ + G + +DG+ PV M+
Sbjct: 29 RGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA---MRR 85
Query: 133 VSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRD------EKKKRVYELLDQLGLRSA 186
V Q FP ++VF+ + A ++L RD E+ R L D++ R
Sbjct: 86 RVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLK 143
Query: 187 THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246
T G+SGG+++R+ I + +P +L +DEPTS LD S + + + D+ +
Sbjct: 144 TPA-------TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK 196
Query: 247 TGSIVLMT--IHQPS 259
+I+++T +HQ +
Sbjct: 197 VTTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 4e-14
Identities = 53/160 (33%), Positives = 76/160 (47%), Gaps = 29/160 (18%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSS-------Y 136
RGE +A++G SG+GKST L LAG + GS G V + G+P+ + + +
Sbjct: 35 RGETIALIGESGSGKSTLLAILAG-LDDGS-SGEVSLVGQPLHQMDEEARAKLRAKHVGF 92
Query: 137 VMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGR 196
V Q L P L E A +R S + + LL+QLGL G+
Sbjct: 93 VFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGL-----------GK 138
Query: 197 R------GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLD 230
R +SGGE++RV++ +P +LF DEPT LD
Sbjct: 139 RLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 4e-14
Identities = 63/219 (28%), Positives = 107/219 (48%), Gaps = 36/219 (16%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT---SYM 130
+L D+S GE+ A++GPSG+GKST + AL Q G V +DGKP++ Y+
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVV-ALLENFYQPQ-GGQVLLDGKPISQYEHKYL 86
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY 190
S V Q+ LF ++ + + S S + V E ++ H++
Sbjct: 87 HSKVSLVGQEPVLFAR-SLQDNIAYGL-----QSCSFE----CVKEAAQ----KAHAHSF 132
Query: 191 IG--------NEGRRG--VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240
I G +G +SGG+++RV+I +I P +L LDE TS LD+ S V +
Sbjct: 133 ISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQA 192
Query: 241 VKDIARTGSIVLMTIHQPSYRIQML--LDRIIVLARGRL 277
+ D +++++ ++R+ + D+I+VL GR+
Sbjct: 193 LYDWPERRTVLVI-----AHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 4e-14
Identities = 55/213 (25%), Positives = 90/213 (42%), Gaps = 56/213 (26%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT-SYMKMV 133
+ D+S + GEI+ I G G G++ +AL G + G + +DGKPVT S +
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFG--LRPPASGEITLDGKPVTRRSPRDAI 73
Query: 134 S---SYVMQDDQ---LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
+YV +D + L L+V E ++ LL
Sbjct: 74 RAGIAYVPEDRKREGLVLDLSVAENIALSS-------------------LL--------- 105
Query: 188 HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART 247
SGG +++V + + P +L LDEPT G+D + + ++++A
Sbjct: 106 ------------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA 153
Query: 248 GSIVLMTIHQPSYRIQMLL---DRIIVLARGRL 277
G VL+ S + LL DRI+V+ GR+
Sbjct: 154 GKAVLLI----SSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 4e-14
Identities = 53/218 (24%), Positives = 104/218 (47%), Gaps = 27/218 (12%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT------TSYMKMVSSYV 137
EI++++GP+GAGK+T + L G G++ + G+ + + M +V ++
Sbjct: 30 EQEIVSLIGPNGAGKTTVFNCLTGFYKPTG--GTILLRGQHIEGLPGHQIARMGVVRTF- 86
Query: 138 MQDDQLFPMLTVFETFMFAAEVRL----------PPSISRDEKKK--RVYELLDQLGLRS 185
Q +LF +TV E + A +L P+ R E + R L+++GL
Sbjct: 87 -QHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE 145
Query: 186 ATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA 245
+ GN ++ G++RR+ I ++ +P +L LDEP +GL+ + E + ++
Sbjct: 146 HANRQAGN-----LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELR 200
Query: 246 RTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
++ ++ I + + DRI V+ +G + G+P
Sbjct: 201 NEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTP 238
|
Length = 255 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 5e-14
Identities = 57/221 (25%), Positives = 107/221 (48%), Gaps = 18/221 (8%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFL---DALAGRIAQGSLEGSVRIDGKPV-- 125
E + +++ + + +I AI+GPSG GK+T L + + I +EG + G+ +
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74
Query: 126 ----TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYE-LLDQ 180
T Y K V V Q FPM ++++ F + + K R+ E L +
Sbjct: 75 PQLDVTEYRKKVG-MVFQKPTPFPM-SIYDNVAFGPRIH---GVKSKHKLDRIVEESLKK 129
Query: 181 LGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240
L + + N+ +SGG+++R+ I + +P ++ LDEPTS LD + + +
Sbjct: 130 AALWDEVKSEL-NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKL 188
Query: 241 VKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
+++++ +IV++T H I+ + D I + RG L+ G
Sbjct: 189 LEELSENYTIVIVT-HNIGQAIR-IADYIAFMYRGELIEYG 227
|
Length = 250 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 7e-14
Identities = 65/250 (26%), Positives = 115/250 (46%), Gaps = 37/250 (14%)
Query: 48 LEFKNLSY-----SIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFL 102
++F+N+ Y + M+K+ L +IS + G +A++G +G+GKST +
Sbjct: 3 IKFENVDYIYSPGTPMEKKG------------LDNISFELEEGSFVALVGHTGSGKSTLM 50
Query: 103 DALAGRIAQGSLEGSVRIDGKPVTTSY-------MKMVSSYVMQ--DDQLFPMLTVFETF 153
+ S G++ I G +T ++ S V Q + QLF TV +
Sbjct: 51 QHFNALLKPSS--GTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFEN-TVLKDV 107
Query: 154 MFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDI 213
F S DE K++ + L ++GL + ++ +SGG+ RRV+I +
Sbjct: 108 EFGP---KNFGFSEDEAKEKALKWLKKVGLS----EDLISKSPFELSGGQMRRVAIAGVM 160
Query: 214 IHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273
++P +L LDEP +GLD +++ KD + G V++ H + D ++VL
Sbjct: 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLE 219
Query: 274 RGRLVYMGSP 283
G+L+ SP
Sbjct: 220 HGKLIKHASP 229
|
Length = 287 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 7e-14
Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 14/189 (7%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR----IAQGSLEGSVRIDGKPVTTSYM 130
LHDIS + + ++ A++GPSG GKSTFL L R I +EG + +DG+ + ++
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCL-NRMNDLIPGARVEGEILLDGENIYDPHV 80
Query: 131 KMVS-----SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS 185
+V V Q FP ++FE + +R+ + +RV L L
Sbjct: 81 DVVELRRRVGMVFQKPNPFPK-SIFENVAYG--LRVNGVKDKAYLAERVERSLRHAALWD 137
Query: 186 ATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA 245
+ +E G+SGG+++R+ I + +P +L +DEP S LD + + E + ++
Sbjct: 138 EVKDRL-HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK 196
Query: 246 RTGSIVLMT 254
+I+++T
Sbjct: 197 ARYTIIIVT 205
|
Length = 253 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 8e-14
Identities = 49/191 (25%), Positives = 104/191 (54%), Gaps = 18/191 (9%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDAL--AGRIAQG-SLEGSVRIDGKPVTTSYMK 131
L++I+ + ++ I A++GPSG GKSTFL L + +G +EG+V +GK + ++
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 132 MVS-----SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA 186
++ V Q F ++++++ + P I + KK++ E+++Q +SA
Sbjct: 83 ILELRRKIGMVFQTPNPF-LMSIYDNISYG------PKIHGTKDKKKLDEIVEQSLKKSA 135
Query: 187 THTYIGNEGRR---GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKD 243
+ ++ +SGG+++R+ I + +P+++ +DEPTS LD S + E + +
Sbjct: 136 LWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIIN 195
Query: 244 IARTGSIVLMT 254
+ + +I+++T
Sbjct: 196 LKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 1e-13
Identities = 71/258 (27%), Positives = 105/258 (40%), Gaps = 82/258 (31%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSVRIDGKPVTTSYM 130
+ I GE + ++GPSG GKST L +AG LE G + I G+ V
Sbjct: 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG------LERITSGEIWIGGRVVNELEP 73
Query: 131 K-----MVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS 185
MV Q+ L+P ++V E + ++R + + E ++RV E L L
Sbjct: 74 ADRDIAMV----FQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEP 126
Query: 186 ATHTYIGNEGR--RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDS------------ 231
R R +SGG+R+RV++G I+ +P++ DEP S LD+
Sbjct: 127 LLD-------RKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQR 179
Query: 232 -------TSAYSV----VEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280
TS Y V VE MT L DR++V+ G +
Sbjct: 180 LHRRLKTTSLY-VTHDQVEA------------MT----------LADRVVVMNGGVAEQI 216
Query: 281 GSPVAL---PAHL--AGF 293
G+PV + PA A F
Sbjct: 217 GTPVEVYEKPASTFVASF 234
|
Length = 356 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 1e-13
Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 25/221 (11%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA---GRIAQGSLEGSVRIDGKP--- 124
E L I+ ++ A++GPSG GKST L L I + G + +DG+
Sbjct: 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74
Query: 125 -VTTSYMKMVSSYVMQDDQLFPMLTVFETFMF---AAEVRLPPSISRD-EKKKRVYELLD 179
+ + +++ V Q FPM +++E + A ++ + E+ R L D
Sbjct: 75 NIDVADLRIKVGMVFQKPNPFPM-SIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD 133
Query: 180 QLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVE 239
++ R +H + G+SGG+++R+ I I +P ++ +DEPTS LD + + + E
Sbjct: 134 EVKDRLKSHAF-------GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEE 186
Query: 240 KVKDIARTGSIVLMTIH--QPSYRIQMLLDRIIVLARGRLV 278
++++ + +IV++T H Q + RI DR G LV
Sbjct: 187 LMEELKKNYTIVIVT-HSMQQARRIS---DRTAFFLMGELV 223
|
Length = 249 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (175), Expect = 1e-13
Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 19/206 (9%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAG--RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDD 141
+GE + I+G +G+GKST L G R +G + S G ++ + V Q+
Sbjct: 27 KGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNP 86
Query: 142 QL-FPMLTVFETFMFAAE-VRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199
+ F TV E F E + LPP E +KRV L ++GL H + +
Sbjct: 87 ETQFVGRTVEEDLAFGPENLCLPPI----EIRKRVDRALAEIGLEKYRH-----RSPKTL 137
Query: 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259
SGG+ + V++ + +P L DE TS LD S +V+E++K + G ++ H
Sbjct: 138 SGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHN-- 195
Query: 260 YRIQML--LDRIIVLARGRLVYMGSP 283
++ L DRIIV+ RG++V G P
Sbjct: 196 --LEELHDADRIIVMDRGKIVLEGEP 219
|
Length = 274 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 2e-13
Identities = 73/295 (24%), Positives = 124/295 (42%), Gaps = 32/295 (10%)
Query: 523 WLREVAVLSWRTALNVIRTPELFLSREIVFAVMALILSSLFKNLSHHDFKTI-NRL-LNF 580
W + ++L R+ R E F + + + A +L+ L H DF+ + +RL L F
Sbjct: 388 WFNQFSILLQRSLKE--RKHESFNTLRVFQVIAAALLAGLM--WWHSDFRDVQDRLGLLF 443
Query: 581 YIFAVCLVFFSSNDAVPTFIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFA 640
+I VF S N +V F QER IF++E + Y SSY ++ ++ LP I F
Sbjct: 444 FISIFWGVFPSFN-SVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFL 502
Query: 641 AITKLLLKLHSSLLNFWM---ILFASLITTNAYVMLVSALVPSYIAGYAVVIATTALFFL 697
+T + L L F + +L ++ + + + A + +V T F L
Sbjct: 503 TVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVL 562
Query: 698 TCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGPLGEVKLS 757
T GF++ + +P W+ YIS Y + L+ ++ + + G P
Sbjct: 563 TGGFYVHK--LPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLP--------- 611
Query: 758 KLHNTTAALLRPDCTLIGEDIVYSMDIQIENIWFDILILLAWGVLYRLFFYLVLR 812
H + R C + ED+ + + + +L+ V YRL YL LR
Sbjct: 612 --HGSD----RASCKFVEEDVAGQI-----SPATSVSVLIFMFVGYRLLAYLALR 655
|
Length = 659 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 2e-13
Identities = 59/225 (26%), Positives = 113/225 (50%), Gaps = 29/225 (12%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFL---DALAGRIAQGSLEGSVRIDGKPVTTSYM 130
+L DI+ + E+ A +GPSG GKSTFL + + + ++G + IDG V +
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 131 KMV-----SSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS 185
+V V Q FP ++++ + ++ +++++KK LD++ +S
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLH---GLAKNKKK------LDEIVEKS 129
Query: 186 ATHTYIGNE-GRR------GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVV 238
T + E G R +SGG+++R+ I I KP++L +DEP S LD A +V+
Sbjct: 130 LTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPV-ATNVI 188
Query: 239 EK-VKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
E ++++ + +I+++T + + + DR+ GR+V +
Sbjct: 189 ENLIQELKKNFTIIVVT--HSMKQAKKVSDRVAFFQSGRIVEYNT 231
|
Length = 251 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 2e-13
Identities = 62/245 (25%), Positives = 111/245 (45%), Gaps = 57/245 (23%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKE---AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDA 104
+ ++ S++ W + E ++ L DI+ + +GE++AI+GP G+GKS+ L A
Sbjct: 1 ISVEDASFT----------WDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSA 50
Query: 105 LAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS 164
L G + + L GSV + G +YV Q+ + T+ E +F
Sbjct: 51 LLGELEK--LSGSVSVPGS----------IAYVSQEPWIQNG-TIRENILFGKPF----- 92
Query: 165 ISRDEKK-KRVYEL------LDQL--GLRSATHTYIGNEGRRGV--SGGERRRVSIGIDI 213
DE++ ++V + L+ L G T IG +G+ SGG+++R+S+ +
Sbjct: 93 ---DEERYEKVIKACALEPDLEILPDGDL----TEIGE---KGINLSGGQKQRISLARAV 142
Query: 214 IHKPSLLFLDEPTSGLDSTSAYSVVEKV--KDIARTGSIVLMTIHQPSYRIQMLLDRIIV 271
+ LD+P S +D+ + E + + +L+T HQ D+I+V
Sbjct: 143 YSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVT-HQLQLLPH--ADQIVV 199
Query: 272 LARGR 276
L GR
Sbjct: 200 LDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 2e-13
Identities = 51/192 (26%), Positives = 93/192 (48%), Gaps = 24/192 (12%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG--RIAQGSLEGSVRIDGKPVTTSYMKM 132
L D S G I A++G +G+GKST AL G R+A G + I G+P + K
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGK----ISILGQPTRQALQKN 78
Query: 133 VSSYVMQDDQL---FPMLTVFETFMFA-----AEVRLPPSISRDEKKKRVYELLDQLGLR 184
+ +YV Q +++ FP+L V + M +R + ++ V L ++ +
Sbjct: 79 LVAYVPQSEEVDWSFPVL-VEDVVMMGRYGHMGWLRRA----KKRDRQIVTAALARVDMV 133
Query: 185 SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI 244
H IG +SGG+++RV + I + ++ LDEP +G+D + ++ ++++
Sbjct: 134 EFRHRQIGE-----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLREL 188
Query: 245 ARTGSIVLMTIH 256
G +L++ H
Sbjct: 189 RDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 2e-13
Identities = 61/214 (28%), Positives = 96/214 (44%), Gaps = 24/214 (11%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT-TSYMKMV 133
L DIS G++ A+MG +GAGKST L L+G + GS+ IDG+ + S +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDA--GSILIDGQEMRFASTTAAL 77
Query: 134 SSYVM---QDDQLFPMLTVFETFMFAAEVRLPPS---ISRDEKKKRVYELLDQLGLRSAT 187
++ V Q+ L P +TV E +LP ++R E L+ LG+
Sbjct: 78 AAGVAIIYQELHLVPEMTVAENLYLG---QLPHKGGIVNRRLLNYEAREQLEHLGVDIDP 134
Query: 188 HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGL---DSTSAYSVVEKVKDI 244
T + +S G+R+ V I + ++ DEPTS L + + V+ +++
Sbjct: 135 DTPLKY-----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA- 188
Query: 245 ARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
G ++L H+ I L D I V GR V
Sbjct: 189 --EGRVILYVSHRME-EIFALCDAITVFKDGRYV 219
|
Length = 501 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (170), Expect = 4e-13
Identities = 49/192 (25%), Positives = 92/192 (47%), Gaps = 12/192 (6%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTF---LDALAGRIAQGSLEGSVRIDGKPVTT 127
+A++L +++ + + A++GPSG GKSTF L+ + I EG + +DG +
Sbjct: 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74
Query: 128 SYMKMVS-----SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLG 182
+ +V V Q FP ++F+ + +R+ D ++RV E L
Sbjct: 75 PAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYG--LRIHGEDDEDFIEERVEESLKAAA 131
Query: 183 LRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVK 242
L + ++ G+SGG+++R+ I I P ++ +DEP S LD S + + +
Sbjct: 132 LWDEVKDKL-DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIH 190
Query: 243 DIARTGSIVLMT 254
+ +IV++T
Sbjct: 191 KLKEDYTIVIVT 202
|
Length = 250 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 4e-13
Identities = 66/224 (29%), Positives = 104/224 (46%), Gaps = 23/224 (10%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV---TTSYMK 131
L IS GE +A++G SG+GKST L L R + G + +DG + T + ++
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKST-LVNLIPRFYEPD-SGQILLDGHDLADYTLASLR 405
Query: 132 MVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS-ISRDEKKKRVYELLDQLGLRSATHTY 190
+ V QD LF T+ + + + I R + +D+L L T
Sbjct: 406 RQVALVSQDVVLFND-TIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPL--GLDTP 462
Query: 191 IGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI--ARTG 248
IG G +SGG+R+R++I ++ +L LDE TS LD+ S V ++ + RT
Sbjct: 463 IGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTT 521
Query: 249 SIV---LMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAH 289
++ L TI + DRI+V+ GR+V G+ L A
Sbjct: 522 LVIAHRLSTIEKA--------DRIVVMDDGRIVERGTHNELLAR 557
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 4e-13
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 33/197 (16%)
Query: 79 SGQAIRGEIMAIMGPSGAGKSTFLDALAGRI--AQGSLEGSVRIDGKPVTTSYMKMVSSY 136
G+ GE++ I+GP+G GK+TF LAG + +G ++ ++I KP Y
Sbjct: 359 GGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKP----------QY 408
Query: 137 VMQDDQLFPMLTVFETFMFAAEVRLPPSISRDE--KKKRVYELLDQLGLRSATHTYIGNE 194
+ D + TV E + + L S + E K ++ LLD+ + +
Sbjct: 409 IKPD---YDG-TV-EDLLRSITDDLGSSYYKSEIIKPLQLERLLDK---------NVKD- 453
Query: 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMT 254
+SGGE +RV+I + L LDEP++ LD +V + ++ IA +
Sbjct: 454 ----LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALV 509
Query: 255 IHQPSYRIQMLLDRIIV 271
+ Y I + DR++V
Sbjct: 510 VDHDIYMIDYISDRLMV 526
|
Length = 590 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (175), Expect = 5e-13
Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 19/207 (9%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG---KPVTTSYMKMVS----SYV 137
GEI IMG SG+GKST + L R+ + + G V IDG ++ + ++ V + V
Sbjct: 54 GEIFVIMGLSGSGKSTMV-RLLNRLIEPT-RGQVLIDGVDIAKISDAELREVRRKKIAMV 111
Query: 138 MQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR 197
Q L P +TV + F E+ I+ +E++++ + L Q+GL + H+Y
Sbjct: 112 FQSFALMPHMTVLDNTAFGMEL---AGINAEERREKALDALRQVGLENYAHSYPDE---- 164
Query: 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVV-EKVKDIARTGSIVLMTIH 256
+SGG R+RV + + P +L +DE S LD + E VK A+ ++ H
Sbjct: 165 -LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISH 223
Query: 257 QPSYRIQMLLDRIIVLARGRLVYMGSP 283
++ + DRI ++ G +V +G+P
Sbjct: 224 DLDEAMR-IGDRIAIMQNGEVVQVGTP 249
|
Length = 400 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 6e-13
Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 38/240 (15%)
Query: 48 LEFKNLSYS-IMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA 106
L N+S + + +Q GV + +L ++S GE + + GPSG+GKST L +L
Sbjct: 5 LNVSNVSKTFTLHQQ--GGVRLP----VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLY 58
Query: 107 G--RIAQGSLEGSVRIDGKPV---TTSYMKMVS------SYVMQDDQLFPMLTVFETFMF 155
+G + VR +G+ V T +++ YV Q ++ P ++ +
Sbjct: 59 ANYLPDEGQIL--VRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDV--- 113
Query: 156 AAEVRLPPSISRDEKKKRVYELLDQLGL-----RSATHTYIGNEGRRGVSGGERRRVSIG 210
AE L + R+ + + +LL +L L A T+ SGGE++RV+I
Sbjct: 114 VAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATF---------SGGEQQRVNIA 164
Query: 211 IDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRII 270
I +L LDEPT+ LD+T+ VVE +++ G+ ++ H R + + DR++
Sbjct: 165 RGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVR-EAVADRLL 223
|
Length = 235 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (172), Expect = 7e-13
Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 22/215 (10%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFL---DA 104
E +N ++ M + K ++LHD++ R ++ A +GPSG GKSTFL +
Sbjct: 81 FEIRNFNFWYMNRTK----------HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQ 130
Query: 105 LAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQD--DQLFPMLTVFETFMFAAEVRLP 162
L I S EG + G T + K +SS ++ +F T FE +F P
Sbjct: 131 LNDLIEGTSHEGEIYFLG---TNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGP 187
Query: 163 PSISRDEKK---KRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSL 219
+ +++K K V + L L + G +SGG+++R+ I I +P +
Sbjct: 188 RNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGN-ALSGGQQQRLCIARAIALEPEV 246
Query: 220 LFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMT 254
L +DEPTS LD + + E + ++ + SI+++T
Sbjct: 247 LLMDEPTSALDPIATAKIEELILELKKKYSIIIVT 281
|
Length = 329 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 7e-13
Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 12/210 (5%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
L I + GE + + G +GAGKST + L+G G+ +G + G P+ S ++
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 135 ----SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISR-DEKKKRVYELLDQLGLRSATHT 189
+ Q+ L P L+V E E+ LP + R LL +L L + T
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 190 -YIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG 248
+G+ G GG+++ V I + + LL LDEP+S L +++ ++D+ G
Sbjct: 137 RPVGDYG-----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHG 191
Query: 249 SIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
+ + I ++ + D I V+ G+ V
Sbjct: 192 -VACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 9e-13
Identities = 66/237 (27%), Positives = 104/237 (43%), Gaps = 58/237 (24%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFL-------DALAG-RIAQGSLEGSVRIDGKPVT 126
L DIS + + + A +GPSG GKST L D + RI EG +R+DG+ +
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRI-----EGEIRLDGQNIY 95
Query: 127 TSYMKMVS-----SYVMQDDQLFPMLTVFETFMF---------------AAEVRLPPSIS 166
+ + V Q FP +++E ++ A E L +
Sbjct: 96 DKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAAL 154
Query: 167 RDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPT 226
DE K R++E +A G+SGG+++R+ I I +P +L LDEPT
Sbjct: 155 WDEVKDRLHE--------NAF----------GLSGGQQQRLVIARAIAIEPEVLLLDEPT 196
Query: 227 SGLDSTSAYSVVEKVKDIARTGSIVLMTIH--QPSYRIQMLLDRIIVLARGRLVYMG 281
S LD S + E + ++ +IV++T H Q + R+ D + G+LV G
Sbjct: 197 SALDPISTLKIEELITELKSKYTIVIVT-HNMQQAARVS---DYTAFMYMGKLVEYG 249
|
Length = 272 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 1e-12
Identities = 75/279 (26%), Positives = 125/279 (44%), Gaps = 41/279 (14%)
Query: 13 LESLLDMDKSLAAKNNNNKDAVVAAAGLKMIPGHGLEFKNLSYSIMKKQKKDGVWITKEA 72
LE D++ S+ + A L + G +EF+++++ GV
Sbjct: 306 LEDFFDLEDSVFQREEPAD-----APELPNVKG-AVEFRHITFEF--ANSSQGV------ 351
Query: 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG---KPVTTSY 129
D+S +A G+ +AI+GP+GAGK+T ++ L R+ + G + IDG VT
Sbjct: 352 ---FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQ-RVYDPT-VGQILIDGIDINTVTRES 406
Query: 130 MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATH- 188
++ + V QD LF ++ E E + K ++ + + RS +
Sbjct: 407 LRKSIATVFQDAGLFNR-SIRENIRLGREGATDEEVYEAAKAAAAHDFILK---RSNGYD 462
Query: 189 TYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA--R 246
T +G G R +SGGER+R++I I+ +L LDE TS LD + V + + R
Sbjct: 463 TLVGERGNR-LSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNR 521
Query: 247 TGSIV---LMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
T I+ L T+ D ++ L +GRL+ GS
Sbjct: 522 TTFIIAHRLSTVRNA--------DLVLFLDQGRLIEKGS 552
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 1e-12
Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 52/234 (22%)
Query: 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSY 136
D+S GE++ I+G SG+GKST L LAGR+A G+ Y
Sbjct: 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH--GTAT----------------Y 62
Query: 137 VMQDDQLFPMLTVFET---FMFAAEVRLPPSISRDEKKKRVY------ELLDQLG----- 182
+M+ + + E + E RD + RV E L +G
Sbjct: 63 IMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYG 122
Query: 183 -LRSATHTYIG----NEGR-----RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST 232
+R+ ++ + R R SGG ++R+ I +++ +P L+F+DEPT GLD
Sbjct: 123 NIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD-- 180
Query: 233 SAYSVVEKVKDIART-----GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
SV ++ D+ R G V++ H ++L R++V+ +GR+V G
Sbjct: 181 --VSVQARLLDLLRGLVRDLGLAVIIVTHDLGV-ARLLAQRLLVMQQGRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 1e-12
Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 40/242 (16%)
Query: 41 KMIPGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKST 100
K+IP ++ NLS+ ++ +GV S + + ++ AI+GPSG GKST
Sbjct: 3 KLIPA--IKVNNLSFYYDTQKILEGV------------SMEIYQSKVTAIIGPSGCGKST 48
Query: 101 FLDALAGRIAQGSLEGSVRIDGK-----------PVTTSYMKMVSSYVMQDDQLFPMLTV 149
FL L R+ + LE VR++G+ V + ++ S V LFPM +V
Sbjct: 49 FLKCL-NRMNE--LESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPM-SV 104
Query: 150 FETFMFAAE-VRLPPSISRD---EKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205
++ + + V P + D E + +L D++ + H + +SGG+++
Sbjct: 105 YDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEI--KHKIH-----KSALDLSGGQQQ 157
Query: 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQML 265
R+ I + KP +L +DEP GLD ++ V ++ + + ++ + +++ L
Sbjct: 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRL 217
Query: 266 LD 267
D
Sbjct: 218 SD 219
|
Length = 261 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 2e-12
Identities = 68/243 (27%), Positives = 122/243 (50%), Gaps = 26/243 (10%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+EFK++S++ D +K+ L+DIS RG A++G +G+GKST + G
Sbjct: 6 VEFKHVSFTY-----PD----SKKP-ALNDISFSIPRGSWTALIGHNGSGKSTISKLING 55
Query: 108 RIAQGSL-EGSVRIDGKPVTTSYMKMVSS---YVMQD-DQLFPMLTVFETFMFAAEVRLP 162
+ + +DG +T + + V Q+ D F TV + F E R
Sbjct: 56 LLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR-- 113
Query: 163 PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSI-GIDIIHKPSLLF 221
++ R E K V ++L +G+ YI +E +SGG+++RV+I GI + +P ++
Sbjct: 114 -AVPRPEMIKIVRDVLADVGMLD----YIDSEPAN-LSGGQKQRVAIAGILAV-EPKIII 166
Query: 222 LDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
LDE TS LD +++ ++ + + ++ +++I M D+++VL G+L+ G
Sbjct: 167 LDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANM-ADQVLVLDDGKLLAQG 225
Query: 282 SPV 284
SPV
Sbjct: 226 SPV 228
|
Length = 282 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 2e-12
Identities = 66/248 (26%), Positives = 119/248 (47%), Gaps = 26/248 (10%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+ F N+SY+ K G +A +HD++ + +G+ AI+G +G+GKST + +
Sbjct: 3 IRFDNVSYTYQK-----GTPYEHQA--IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINA 55
Query: 108 RIAQGSLEGSVRIDGKPVTTS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP 163
+ + G+V +D +T Y++ V + Q FP +FE + E+ P
Sbjct: 56 LLKPTT--GTVTVDDITITHKTKDKYIRPVRKRIGMVFQ-FPESQLFEDTV-EREIIFGP 111
Query: 164 ---SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLL 220
++ DE K + LL LG + ++ +SGG+ R+++I + P ++
Sbjct: 112 KNFKMNLDEVKNYAHRLLMDLGFSRD----VMSQSPFQMSGGQMRKIAIVSILAMNPDII 167
Query: 221 FLDEPTSGLDSTSAYSVVEKVKDIA--RTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
LDEPT+GLD S V+ +K + +I+L++ H + + D +IV+ G +V
Sbjct: 168 VLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVS-HDMN-EVARYADEVIVMKEGSIV 225
Query: 279 YMGSPVAL 286
SP L
Sbjct: 226 SQTSPKEL 233
|
Length = 286 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 2e-12
Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 12/202 (5%)
Query: 87 IMAIMGPSGAGKSTFLDALAGRI---AQGSLEGSVRIDGKPV---TTSYMKMVSSYVMQD 140
I A+MGPSG+GKST L I + + G V +DG+ + ++ V Q
Sbjct: 31 ITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQI 90
Query: 141 DQLFPMLTVFETFMFAAEV-RLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199
P L++FE ++ RL S + E ++RV L++ L + + +
Sbjct: 91 PNPIPNLSIFENVALGLKLNRLVKS--KKELQERVRWALEKAQLWDEVKDRLDAPAGK-L 147
Query: 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259
SGG+++R+ I + +P +L DEPT+ LD + + ++ + +IVL+T H P
Sbjct: 148 SGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVT-HFPQ 206
Query: 260 YRIQMLLDRIIVLARGRLVYMG 281
+ + D + L +G++V G
Sbjct: 207 -QAARISDYVAFLYKGQIVEWG 227
|
Length = 250 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT--------TS 128
+IS RG+I AIMGPSG GK+T L + G+IA G + DG+ + T
Sbjct: 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDH--GEILFDGENIPAMSRSRLYTV 82
Query: 129 YMKMVSSYVMQDDQLFPMLTVFETFMFA--AEVRLPPSISRDEKKKRVYELLDQLGLRSA 186
+M S + Q LF + VF+ + +LP + V L+ +GLR A
Sbjct: 83 RKRM--SMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHST----VMMKLEAVGLRGA 136
Query: 187 THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLD 230
+ +E +SGG RR ++ I +P L+ DEP G D
Sbjct: 137 AK-LMPSE----LSGGMARRAALARAIALEPDLIMFDEPFVGQD 175
|
Length = 269 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 2e-12
Identities = 54/201 (26%), Positives = 95/201 (47%), Gaps = 30/201 (14%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK------- 123
E + L +I+ E+ AI+GPSG GKST++ L R+ + L SV+ GK
Sbjct: 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTL-NRMVE--LVPSVKTTGKILYRDQN 92
Query: 124 ----PVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEV------RLPPSISRDEKKKR 173
+ ++ V Q FP ++++ + ++ + I EK R
Sbjct: 93 IFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIV--EKSLR 149
Query: 174 VYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTS 233
+ D+L R + Y G+SGG+++R+ I + +P ++ +DEPTS LD S
Sbjct: 150 GAAIWDELKDRLHDNAY-------GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPIS 202
Query: 234 AYSVVEKVKDIARTGSIVLMT 254
V E V+++ + SI+++T
Sbjct: 203 TLKVEELVQELKKDYSIIIVT 223
|
Length = 271 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 2e-12
Identities = 67/252 (26%), Positives = 113/252 (44%), Gaps = 42/252 (16%)
Query: 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFL--- 102
H LE K+LS +K+ ++DIS + + A++GPSG GKSTFL
Sbjct: 20 HILEVKDLSIYYGEKRA------------VNDISMDIEKHAVTALIGPSGCGKSTFLRSI 67
Query: 103 DALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS-----SYVMQDDQLFPMLTVFETFMFAA 157
+ + I EG + +G + S + +V+ V Q FP +++ A
Sbjct: 68 NRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHAL 126
Query: 158 EVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR-------GVSGGERRRVSIG 210
+ E++K V LD++ S T + +E + +SGG+++R+ I
Sbjct: 127 KYA-------GERRKSV---LDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIA 176
Query: 211 IDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIH-QPSYRIQMLLDRI 269
+ KP++L LDEP S LD S + E + ++ SI+++T + Q + R+ DR
Sbjct: 177 RTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVS---DRT 233
Query: 270 IVLARGRLVYMG 281
G LV
Sbjct: 234 AFFLNGDLVEYD 245
|
Length = 268 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-12
Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 40/214 (18%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP-------VTTSYMKMVSSYV 137
G+ +A++G SG+GKST +AG S G + DG P V + + MV
Sbjct: 505 GQRVALVGGSGSGKSTIAKLVAGLYQPWS--GEILFDGIPREEIPREVLANSVAMV---- 558
Query: 138 MQDDQLFPMLTVFETFMFAAEVR-----LPPSISRDE--KKKRVYELLDQLGLRSATHTY 190
DQ + F+F VR P+I + + + + D + R +
Sbjct: 559 ---DQ--------DIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDA 607
Query: 191 IGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKD--IARTG 248
EG +SGG+R+R+ I ++ PS+L LDE TS LD EK+ D + R G
Sbjct: 608 ELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPE-----TEKIIDDNLRRRG 662
Query: 249 SIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
++ H+ S I+ D IIVL RG++V G+
Sbjct: 663 CTCIIVAHRLS-TIRD-CDEIIVLERGKVVQRGT 694
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 3e-12
Identities = 59/217 (27%), Positives = 103/217 (47%), Gaps = 24/217 (11%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT-TSYMKMV 133
+ D+S GEI+ I G GAG++ AL G A+ + G + +DGKPV S +
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFG--ARPASSGEILLDGKPVRIRSPRDAI 332
Query: 134 S---SYV---MQDDQLFPMLTVFETFMFAAEVRLPPS--ISRDEKKKRVYELLDQLGLRS 185
+YV + + L +++ E A+ R I R +++ + +L +++
Sbjct: 333 KAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKT 392
Query: 186 A-THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI 244
IG +SGG +++V + + P +L LDEPT G+D + + ++++
Sbjct: 393 PSPEQPIGT-----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL 447
Query: 245 ARTGSIVLMTIHQPSYRIQMLL---DRIIVLARGRLV 278
A G +LM S + LL DRI+V+ GR+V
Sbjct: 448 AAEGKAILMI----SSELPELLGLSDRILVMREGRIV 480
|
Length = 500 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 3e-12
Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 12/188 (6%)
Query: 68 ITKE---AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124
ITK L ++S + GEI+++ G +GAGKST + L+G G+ EG + +G+
Sbjct: 11 ITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEE 70
Query: 125 VTTSYMKMVS----SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQ 180
+ S ++ + + Q+ L L+V E E+ + D R +LL Q
Sbjct: 71 LQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQ 130
Query: 181 LGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240
L L T +GN G G+++ V I + + LL LDEPT+ L + +++
Sbjct: 131 LKLDINPATPVGNLG-----LGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI 185
Query: 241 VKDIARTG 248
++D+ G
Sbjct: 186 IRDLKAHG 193
|
Length = 506 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 3e-12
Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 18/191 (9%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG-----------K 123
+ IS R ++ AI+GPSG GKSTF+ L RI++ LEG V+++G
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTL-NRISE--LEGPVKVEGVVDFFGQNIYDP 79
Query: 124 PVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL 183
+ + ++ V Q FPM +++E + VR+ + + + + V L L
Sbjct: 80 RININRLRRQIGMVFQRPNPFPM-SIYENVAYG--VRISAKLPQADLDEIVESALKGAAL 136
Query: 184 RSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKD 243
+ N+ G+SGG+++R+ I + KP +L +DEP S LD + V E +
Sbjct: 137 WQEVKDKL-NKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHS 195
Query: 244 IARTGSIVLMT 254
+ +I ++T
Sbjct: 196 LRSELTIAIVT 206
|
Length = 259 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 3e-12
Identities = 63/240 (26%), Positives = 109/240 (45%), Gaps = 36/240 (15%)
Query: 50 FKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI 109
+K S S+ K E + L D+S + RGE + ++G +GAGKST L LAG
Sbjct: 13 YKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY 72
Query: 110 AQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDE 169
S G+V + G+ VSS + P LT E + +SR E
Sbjct: 73 PPDS--GTVTVRGR---------VSSLLGLGGGFNPELTGRENIYLNGRLL---GLSRKE 118
Query: 170 KKKRVYELLD--QLG------LRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLF 221
+++ E+++ +LG ++ TY S G + R++ I +P +L
Sbjct: 119 IDEKIDEIIEFSELGDFIDLPVK----TY---------SSGMKARLAFAIATALEPDILL 165
Query: 222 LDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
+DE + D+ +++++ + G V++ H PS I+ L DR +VL +G++ + G
Sbjct: 166 IDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS-IKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 4e-12
Identities = 65/240 (27%), Positives = 112/240 (46%), Gaps = 18/240 (7%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYM---- 130
L+ +S +GE ++I+G +G+GKST + G + EG V+IDG+ +T +
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGELLTAENVWNLR 80
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY 190
+ + D F TV + F E + I R+E KRV E L + + +
Sbjct: 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLD----F 133
Query: 191 IGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI 250
E R +SGG+++RV++ I +P ++ LDE TS LD T ++ + +I +
Sbjct: 134 KTREPAR-LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL 192
Query: 251 VLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPA---HLAGFGRTVPDGENSLEYL 307
+++I DRI+V+ G ++ +P L A + G VP N ++ L
Sbjct: 193 TVLSITH-DLDEAASSDRILVMKAGEIIKEAAPSELFATSEDMVEIGLDVPFSSNLMKDL 251
|
Length = 277 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-12
Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 13/177 (7%)
Query: 87 IMAIMGPSGAGKSTFLDALAGR----IAQGSLEGSVRIDGKPVTTSYMKMVS-----SYV 137
+ A +GPSG GKST L L R I +EG V +DG+ + + V+ V
Sbjct: 32 VTAFIGPSGCGKSTVLRTL-NRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMV 90
Query: 138 MQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR 197
Q FP +++ + A ++L ++ + + V + L L + + G
Sbjct: 91 FQRPNPFPTMSIRDNV--VAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGG- 147
Query: 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMT 254
G+SGG+++R+ I I +P +L +DEP S LD S ++ + + ++ + +IV++T
Sbjct: 148 GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVT 204
|
Length = 258 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 4e-12
Identities = 72/257 (28%), Positives = 117/257 (45%), Gaps = 25/257 (9%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIR---GEIMAIMGPSGAGKSTFLDA 104
LE +L K K W + L + G +R GE + ++G SG GKSTF A
Sbjct: 9 LEVADLKVHFDIKDGKQWFWQPPKT--LKAVDGVTLRLYEGETLGVVGESGCGKSTFARA 66
Query: 105 LAGRIAQGSLEGSVRIDGKPVT---TSYMKMVSS---YVMQDD--QLFPMLTVFETFMFA 156
+ G + + +G V GK + + V S + QD L P +T+ E + A
Sbjct: 67 IIGLVK--ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGE--IIA 122
Query: 157 AEVRL-PPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIH 215
+R P +SR E K RV ++ ++GL +E SGG+ +R+ I +I
Sbjct: 123 EPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHE----FSGGQCQRIGIARALIL 178
Query: 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275
+P L+ DEP S LD + VV ++ + R + L+ I ++ + DR++V+ G
Sbjct: 179 EPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLG 238
Query: 276 RLVYMGSPVAL---PAH 289
V +G+ + P H
Sbjct: 239 HAVELGTYDEVYHNPLH 255
|
Length = 331 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 5e-12
Identities = 65/224 (29%), Positives = 104/224 (46%), Gaps = 25/224 (11%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMV 133
LLH +S G++ ++G +G+GKST L L GR Q EG + +D +P+ + K
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GR-HQPPSEGEILLDAQPLESWSSKAF 83
Query: 134 SSYVMQDDQLFPM---LTVFETFMFAAEVRLP--PSISR--DEKKKRVYELLDQLGLRSA 186
+ V Q P +TV E A R P ++ R +++V E + +GL+
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRE---LVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPL 140
Query: 187 THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246
H + + +SGGER+R I + + L LDEPTS LD V+ V +++
Sbjct: 141 AHRLVDS-----LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ 195
Query: 247 T-GSIVLMTIHQPSYRIQM---LLDRIIVLARGRLVYMGSPVAL 286
G V+ +H I M D ++ L G ++ G+P L
Sbjct: 196 ERGLTVIAVLHD----INMAARYCDYLVALRGGEMIAQGTPAEL 235
|
Length = 265 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 6e-12
Identities = 63/244 (25%), Positives = 104/244 (42%), Gaps = 68/244 (27%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
D+S GE++ I+G SG+GK+T L+AL+ R+A + G V
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDA--GEVH--------------- 64
Query: 135 SYVMQDDQLFPMLTVFETFMFAAEVR-----------------LPPSISRDEKKKRVYEL 177
Y M+D QL + + E AE R L +S + E
Sbjct: 65 -YRMRDGQLRDLYALSE-----AERRRLLRTEWGFVHQHPRDGLRMQVS---AGGNIGER 115
Query: 178 LDQLG------LRSATHTYIGN----EGR-----RGVSGGERRRVSIGIDIIHKPSLLFL 222
L +G +R+ ++ R SGG ++R+ I +++ P L+F+
Sbjct: 116 LMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFM 175
Query: 223 DEPTSGLDSTSAYSVVEKVKDIART-----GSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277
DEPT GLD SV ++ D+ R G V++ H + ++L R++V+ +GR+
Sbjct: 176 DEPTGGLD----VSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLAHRLLVMKQGRV 230
Query: 278 VYMG 281
V G
Sbjct: 231 VESG 234
|
Length = 258 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 7e-12
Identities = 54/199 (27%), Positives = 95/199 (47%), Gaps = 27/199 (13%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTF---LDALAGRIAQGSLEGSVRIDGKPVTT 127
E L ++S Q + + A++GPSG GKSTF L+ + I +EG V I+G+ +
Sbjct: 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83
Query: 128 SYMKMVS-----SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLG 182
+ +V V Q FPM ++++ + P I KK + + +
Sbjct: 84 PDVDVVELRKNVGMVFQKPNPFPM-SIYDNVAYG------PRIHGANKKD--LDGVVENA 134
Query: 183 LRSATHTYIGNEGRR-------GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAY 235
LRSA + +E +SGG+++R+ I + KP ++ DEPTS LD S
Sbjct: 135 LRSAA---LWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTA 191
Query: 236 SVVEKVKDIARTGSIVLMT 254
+ + + ++ + +IV++T
Sbjct: 192 RIEDLIMNLKKDYTIVIVT 210
|
Length = 258 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 8e-12
Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 13/200 (6%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSS--YVMQDDQ 142
GE ++G +GAGK+T L G S G + GK + T+ + + Y Q D
Sbjct: 1965 GECFGLLGVNGAGKTTTFKMLTGDTTVTS--GDATVAGKSILTNISDVHQNMGYCPQFDA 2022
Query: 143 LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202
+ +LT E A +R P+ +E +K + LGL G SGG
Sbjct: 2023 IDDLLTGREHLYLYARLRGVPA---EEIEKVANWSIQSLGLSLYADRLAGT-----YSGG 2074
Query: 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRI 262
+R++S I +I P L+ LDEPT+G+D + + + I R G V++T H
Sbjct: 2075 NKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-EC 2133
Query: 263 QMLLDRIIVLARGRLVYMGS 282
+ L R+ ++ +G +G+
Sbjct: 2134 EALCTRLAIMVKGAFQCLGT 2153
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 8e-12
Identities = 59/215 (27%), Positives = 102/215 (47%), Gaps = 28/215 (13%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRI------------DGKPVTTSYMKM 132
GEI I+G SGAGK+T +AG + S E +VR+ DG+ Y+ +
Sbjct: 310 GEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGI 369
Query: 133 VSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG 192
+ Q+ L+P TV + A + LP ++R K V L +G I
Sbjct: 370 LH----QEYDLYPHRTVLDNLTEAIGLELPDELAR---MKAVI-TLKMVGFDEEKAEEIL 421
Query: 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDS----TSAYSVVEKVKDIARTG 248
++ +S GER RV++ +I +P ++ LDEPT +D +S+++ +++ +T
Sbjct: 422 DKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTF 481
Query: 249 SIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
IV H + + + DR ++ G++V +G P
Sbjct: 482 IIV---SHDMDF-VLDVCDRAALMRDGKIVKIGDP 512
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 8e-12
Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 36/190 (18%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIA--QGSLE--GSVRIDGKPVTTSY 129
+L D+S + G+I+ ++GP+GAGKST + + G +A +G ++ G +RI
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRI--------- 69
Query: 130 MKMVSSYVMQDDQLFPM--LTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
YV Q L LTV F+ RL P +++ +L L A
Sbjct: 70 -----GYVPQKLYLDTTLPLTV-NRFL-----RLRPGTKKED-------ILPALKRVQAG 111
Query: 188 HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART 247
H + + + +SGGE +RV + ++++P LL LDEPT G+D ++ + + + R
Sbjct: 112 H--LIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRE 169
Query: 248 -GSIVLMTIH 256
VLM H
Sbjct: 170 LDCAVLMVSH 179
|
Length = 251 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 72/251 (28%), Positives = 118/251 (47%), Gaps = 31/251 (12%)
Query: 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA 106
G+ +N+SY+ + G A L D++ G A +G +G+GKST + L
Sbjct: 2 GINLQNVSYTY-----QAGTPFEGRA--LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLN 54
Query: 107 GRIAQGSLEGSVRIDGKPVT-TSYMKMVSS------YVMQDDQLFPMLTVFETFMFAAEV 159
G +GSVR+D +T TS K + V Q FP +FE + +V
Sbjct: 55 GLHV--PTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQ----FPESQLFEETVLK-DV 107
Query: 160 RLPPS---ISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHK 216
P +S++E + E L +G+ + + + +SGG+ RRV+I + +
Sbjct: 108 AFGPQNFGVSQEEAEALAREKLALVGISES----LFEKNPFELSGGQMRRVAIAGILAME 163
Query: 217 PSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG-SIVLMTIHQPSYRIQMLLDRIIVLARG 275
P +L LDEPT+GLD ++ K + ++G +IVL+T H + D + VL +G
Sbjct: 164 PKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVT-HLMD-DVANYADFVYVLEKG 221
Query: 276 RLVYMGSPVAL 286
+LV G P +
Sbjct: 222 KLVLSGKPKDI 232
|
Length = 280 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 1e-11
Identities = 63/249 (25%), Positives = 109/249 (43%), Gaps = 34/249 (13%)
Query: 67 WITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126
W L+ I+ G ++A++G G GKS+ L AL + + +EG V + G +
Sbjct: 646 WARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVHMKG---S 700
Query: 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYE----LLDQLG 182
+Y+ +++ D ++ E +F + ++V E L D
Sbjct: 701 VAYVPQ-QAWIQND-------SLRENILFGKALNEK-------YYQQVLEACALLPDLEI 745
Query: 183 LRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKV- 241
L S T IG +G +SGG+++RVS+ + + D+P S +D+ + E V
Sbjct: 746 LPSGDRTEIGEKG-VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVI 804
Query: 242 --KDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAH---LAGFGRT 296
+ + + + +L+T H SY Q+ D IIV++ G++ MGS L A F RT
Sbjct: 805 GPEGVLKNKTRILVT-HGISYLPQV--DVIIVMSGGKISEMGSYQELLQRDGAFAEFLRT 861
Query: 297 VPDGENSLE 305
E
Sbjct: 862 YAPDEQQGH 870
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 1e-11
Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 28/220 (12%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT---SYM 130
+L +++ GE + I+GPSG+GKST L L R+ G V +DG + +++
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKST-LTKLLQRLYTPQH-GQVLVDGVDLAIADPAWL 529
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISR----DEKKKRVYELLDQ----LG 182
+ V+Q E +F+ +R ++ E +L
Sbjct: 530 RRQMGVVLQ-----------ENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISE 578
Query: 183 LRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVK 242
L +T +G +G +SGG+R+R++I ++ P +L DE TS LD S ++ ++
Sbjct: 579 LPQGYNTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMR 637
Query: 243 DIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
+I R G V++ H+ S DRIIVL +G++ G
Sbjct: 638 EICR-GRTVIIIAHRLSTVRAC--DRIIVLEKGQIAESGR 674
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-11
Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 33/228 (14%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALA---GRIAQGSLEGSVRIDGKPVTTSYMK 131
L +S + A++GPSG GKSTFL L RI ++GSV +DG+ + +
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 132 MVS-----SYVMQDDQLFPMLTVFETFMFAAE----------VRLPPSISRDEKKKR--- 173
+V V Q FP ++ E + RL + RD+K
Sbjct: 121 LVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARL---LGRDDKDAEDEL 176
Query: 174 VYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTS 233
V L Q L + + + G+SGG+++R+ I + P ++ +DEP S LD +
Sbjct: 177 VERSLRQAALWDEVNDRLDDNAL-GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIA 235
Query: 234 AYSVVEKVKDIARTGSIVLMTIH--QPSYRIQMLLDRIIV-LARGRLV 278
+ + ++++A ++V++T H Q + RI D+ V L G LV
Sbjct: 236 TSKIEDLIEELAEEYTVVVVT-HNMQQAARIS---DQTAVFLTGGELV 279
|
Length = 305 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 1e-11
Identities = 56/200 (28%), Positives = 98/200 (49%), Gaps = 28/200 (14%)
Query: 70 KEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDAL---AGRIAQGSLEGSVRIDGKPVT 126
K+A L+ +S EI A++GPSG+GKST L ++ + ++ GS+ +G +
Sbjct: 18 KKA--LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIY 75
Query: 127 TSYMKMVS-----SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQL 181
+ V V Q FPM +++E ++ +RL + K K ++LD+
Sbjct: 76 SPRTDTVDLRKEIGMVFQQPNPFPM-SIYENVVYG--LRL-----KGIKDK---QVLDEA 124
Query: 182 GLRSATHTYIGNEGRR-------GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSA 234
+S I +E + G+SGG+++RV I + P ++ LDEPTS LD SA
Sbjct: 125 VEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISA 184
Query: 235 YSVVEKVKDIARTGSIVLMT 254
+ E + + +++L+T
Sbjct: 185 GKIEETLLGLKDDYTMLLVT 204
|
Length = 252 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-11
Identities = 71/284 (25%), Positives = 115/284 (40%), Gaps = 54/284 (19%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDAL---------AGRI---------------- 109
L +IS GE++ I+G SGAGKS + L +GRI
Sbjct: 16 LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERP 75
Query: 110 ---------AQGSLEGSVRID----GKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFA 156
G+LE +D + K ++ + + L+ TV + + A
Sbjct: 76 SKVGEPCPVCGGTLE-PEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEA 134
Query: 157 AEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHK 216
E E R +L++ + L S T+I R +SGGE++RV + + +
Sbjct: 135 LE---EIGYEGKEAVGRAVDLIEMVQL-SHRITHIA----RDLSGGEKQRVVLARQLAKE 186
Query: 217 PSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVL-MTIHQPSYRIQMLLDRIIVLARG 275
P L DEPT LD +A V +++ + I + +T H P I+ L D+ I L G
Sbjct: 187 PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLENG 245
Query: 276 RLVYMGSPVALPAHLAGFGRTVPDGENSLEYLL--DVIKEYDES 317
+ G+P + +A F V + E E + +IK + S
Sbjct: 246 EIKEEGTPDEV---VAVFMEGVSEVEKECEVEVGEPIIKVRNVS 286
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 2e-11
Identities = 54/165 (32%), Positives = 78/165 (47%), Gaps = 19/165 (11%)
Query: 76 HDISGQAIRGEIMAIMGPSGAGKSTFLDALAG--RIAQGSLE-----GSV---RIDGKPV 125
H+ S GEI +MG SG+GKST L A+ G +++GS+ GSV D +
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS 185
V S V Q L P TV E F E++ + + E++KRV E L+ +GL
Sbjct: 101 RRLRTHRV-SMVFQQFALLPWRTVEENVAFGLEMQ---GMPKAERRKRVDEQLELVGLAQ 156
Query: 186 ATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLD 230
G +SGG ++RV + + +L +DEP S LD
Sbjct: 157 WADRKPGE-----LSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 2e-11
Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 28/186 (15%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAGR----IAQGSLEGSVRIDGKPVTTSYMKMVS----- 134
RG++ A++GPSG GKST L +L R I SL+G V DG + + V
Sbjct: 38 RGKVTALIGPSGCGKSTVLRSL-NRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRI 96
Query: 135 SYVMQDDQLFPMLTVFETFMFAAEVR-----LPPSISRDEKKKRVY-ELLDQLGLRSATH 188
V Q FP +++E F A + + + R +K V+ E D+L
Sbjct: 97 GMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKL------- 148
Query: 189 TYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG 248
NE +SGG+++R+ I I +P ++ +DEP S LD S + E + ++ +
Sbjct: 149 ----NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNF 204
Query: 249 SIVLMT 254
+IV++T
Sbjct: 205 TIVIVT 210
|
Length = 269 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 2e-11
Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 21/216 (9%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVR-----------IDGKPVTTSYMKM 132
RGE +AI+G SG+GKS AL + Q I+ + + M+
Sbjct: 41 RGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRH 100
Query: 133 VS----SYVMQD--DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA 186
V + + Q+ L P+ TV E A +RL SR+E +LDQ+ + A
Sbjct: 101 VRGADMAMIFQEPMTSLNPVFTVGE--QIAESIRLHQGASREEAMVEAKRMLDQVRIPEA 158
Query: 187 THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246
T + + +SGG R+RV I + + +P++L DEPT+ LD T +++ +K + +
Sbjct: 159 -QTILSRYPHQ-LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQK 216
Query: 247 TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
S+ ++ I + + DR++V+ +G V GS
Sbjct: 217 EMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGS 252
|
Length = 623 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 2e-11
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 33/197 (16%)
Query: 79 SGQAIRGEIMAIMGPSGAGKSTFLDALAGRIA--QGSLEGSVRIDGKPVTTSYMKMVSSY 136
G+ GE++ I+GP+G GK+TF+ LAG I +GS E +++ KP Y
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EEDLKVSYKP----------QY 409
Query: 137 VMQDDQLFPMLTVFETFMFAAEVRLPPSISRDE--KKKRVYELLDQLGLRSATHTYIGNE 194
+ D + TV + A S + E K + +LL++
Sbjct: 410 ISPD---YDG-TVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERP------------- 452
Query: 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMT 254
+SGGE +RV+I + + L LDEP++ LD V + ++ +
Sbjct: 453 -VDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALV 511
Query: 255 IHQPSYRIQMLLDRIIV 271
+ Y I + DR+IV
Sbjct: 512 VDHDIYMIDYVSDRLIV 528
|
Length = 591 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 3e-11
Identities = 61/203 (30%), Positives = 99/203 (48%), Gaps = 20/203 (9%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT----SYMKMVSSYVMQD 140
GE++A++GPSG+GKST AL + Q + G V +DG P+ + V+ V Q+
Sbjct: 507 GEVVALVGPSGSGKSTVA-ALLQNLYQPT-GGQVLLDGVPLVQYDHHYLHRQVAL-VGQE 563
Query: 141 DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV- 199
LF +V E + I K ++ + + + Y G +G
Sbjct: 564 PVLFSG-SVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEF-----PNGYDTEVGEKGSQ 617
Query: 200 -SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQP 258
SGG+++R++I ++ KP +L LDE TS LD+ + E +RT VL+ H+
Sbjct: 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRT---VLLIAHRL 674
Query: 259 SYRIQMLLDRIIVLARGRLVYMG 281
S + D+I+VL +G +V MG
Sbjct: 675 STVERA--DQILVLKKGSVVEMG 695
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 4e-11
Identities = 60/233 (25%), Positives = 110/233 (47%), Gaps = 19/233 (8%)
Query: 68 ITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127
+T+E + + +S GE ++++G SG+GKST AL R+ + S G + +G+ + T
Sbjct: 333 VTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALL-RLVE-SQGGEIIFNGQRIDT 390
Query: 128 -SYMKMVS-----SYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLD 179
S K+ + ++ QD L P TV ++ M +R+ + RV LL+
Sbjct: 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIM--EPLRVHGLLPGKAAAARVAWLLE 448
Query: 180 QLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVE 239
++GL +E SGG+R+R+ I + P ++ DE S LD + ++
Sbjct: 449 RVGLLPEHAWRYPHE----FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIIN 504
Query: 240 KVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL---PAH 289
+ D+ R I + I ++ + R+ V+ G++V +G A+ P H
Sbjct: 505 LLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQH 557
|
Length = 623 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 4e-11
Identities = 50/177 (28%), Positives = 90/177 (50%), Gaps = 12/177 (6%)
Query: 86 EIMAIMGPSGAGKSTFLDAL--AGRIAQGS-LEGSVRIDGKPVTTSYMKMVS-----SYV 137
+I AI+GPSG GKST L AL I G+ LEG+V +D + + + + +V+ V
Sbjct: 31 QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMV 90
Query: 138 MQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR 197
Q FP ++F+ F R+ + ++ + V + L Q L + G
Sbjct: 91 FQQPNPFPK-SIFDNVAFGP--RMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGL- 146
Query: 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMT 254
+SGG+++R+ I + +P ++ +DEP S LD S + E ++++ + +I ++T
Sbjct: 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVT 203
|
Length = 251 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 4e-11
Identities = 55/199 (27%), Positives = 93/199 (46%), Gaps = 24/199 (12%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT----TSYMKMVSSYVMQD 140
GE+ A++G +GAGKST + +AG + S G++ I G P ++ V Q+
Sbjct: 37 GEVHALLGGNGAGKSTLMKIIAGIVPPDS--GTLEIGGNPCARLTPAKAHQLGIYLVPQE 94
Query: 141 DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200
LFP L+V E +F LP R +++ +LL LG + + G+ +
Sbjct: 95 PLLFPNLSVKENILF----GLP---KRQASMQKMKQLLAALGCQLDLDSSAGS-----LE 142
Query: 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG-SIV-----LMT 254
+R+ V I ++ +L LDEPT+ L + +++++ G IV L
Sbjct: 143 VADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPE 202
Query: 255 IHQPSYRIQMLLDRIIVLA 273
I Q + RI ++ D I L+
Sbjct: 203 IRQLADRISVMRDGTIALS 221
|
Length = 510 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 5e-11
Identities = 53/211 (25%), Positives = 103/211 (48%), Gaps = 17/211 (8%)
Query: 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT-SYMKMVSS 135
D+S RGEI+ + G GAG++ + AL G G EG+V I+GKPV + + + +
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFG-AYPGKFEGNVFINGKPVDIRNPAQAIRA 336
Query: 136 ---YVMQD---DQLFPMLTVFETFMFAAEVRLPPSISRDEKK--KRVYELLDQLGLRSAT 187
V +D + P+L V + + + D + + + +L +++A+
Sbjct: 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTAS 396
Query: 188 HTY-IGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246
IG +SGG +++ + ++ P +L LDEPT G+D + Y + + + +A+
Sbjct: 397 PFLPIG-----RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ 451
Query: 247 TGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277
G + ++ + + L DR++V+ G+L
Sbjct: 452 EG-VAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 5e-11
Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 39/224 (17%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFL---DALAGRIAQGSLEGSVRIDGKPVTTSYMK 131
L D+S ++ A++GPSG GKSTFL + + I +EG + GK V + +
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 132 MVS-----SYVMQDDQLFPMLTVFETFMFAAEV---------RLPPSISRDEKKKRVYEL 177
V+ V Q FP ++++ + ++ R+ S+ R V +
Sbjct: 115 PVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQ 173
Query: 178 LDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSV 237
LD GL +SGG+++R+ I I P ++ +DEP S LD + +
Sbjct: 174 LDSSGLD--------------LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKI 219
Query: 238 VEKVKDIARTGSIVLMTIH--QPSYRIQMLLDRIIV-LARGRLV 278
+ ++++A ++V++T H Q + RI D+ V L G LV
Sbjct: 220 EDLIEELAEEYTVVIVT-HNMQQAARIS---DKTAVFLTGGELV 259
|
Length = 285 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 5e-11
Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 32/212 (15%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALA---GRIAQGSLEGSVRIDGKPVTTSYMKMVS-----S 135
+ EI A++GPSG GKST+L L I ++ G+V + G+ + +V
Sbjct: 30 QNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVG 89
Query: 136 YVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT-------H 188
V Q FP +++E ++ +RL K K V + + L+ A H
Sbjct: 90 MVFQQPNPFP-FSIYENVIYG--LRL-----AGVKDKAVLDEAVETSLKQAAIWDEVKDH 141
Query: 189 TYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG 248
+ E +SGG+++RV I + KP ++ LDEPTS LD S+ + + ++
Sbjct: 142 LH---ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQY 198
Query: 249 SIVLMT--IHQPSYRIQMLLDRIIVLARGRLV 278
+I+L+T +HQ S RI D+ G L+
Sbjct: 199 TIILVTHSMHQAS-RIS---DKTAFFLTGNLI 226
|
Length = 252 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 5e-11
Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 25/199 (12%)
Query: 70 KEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR----IAQGSLEGSVRIDGKPV 125
K+A L D+ + A +GPSG GKSTFL L R I + G + +DG+ +
Sbjct: 32 KQA--LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCL-NRMNDTIDGCRVTGKITLDGEDI 88
Query: 126 TTSYMKMVS-----SYVMQDDQLFPMLTVFETFMFAAEVRLPPSI-----SRDEKKKRVY 175
+ +V V Q FP +++E + P I S+ E + V
Sbjct: 89 YDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYG------PRIHGLARSKAELDEIVE 141
Query: 176 ELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAY 235
L + GL + G G+SGG+++R+ I I P ++ +DEP S LD +
Sbjct: 142 TSLRKAGLWEEVKDRLHEPGT-GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATA 200
Query: 236 SVVEKVKDIARTGSIVLMT 254
V E + ++ + +IV++T
Sbjct: 201 KVEELIDELRQNYTIVIVT 219
|
Length = 267 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 6e-11
Identities = 69/249 (27%), Positives = 115/249 (46%), Gaps = 46/249 (18%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMK--- 131
L+D++ G +AI+G +G+GKST L L G + S G+V I G+ V T+ K
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS--GTVTI-GERVITAGKKNKK 79
Query: 132 ---------MVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS---ISRDEKKKRVYELLD 179
+V + + QLF TV + F P +S ++ K++ E+++
Sbjct: 80 LKPLRKKVGIV--FQFPEHQLFEE-TVEKDICFG------PMNFGVSEEDAKQKAREMIE 130
Query: 180 QLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVE 239
+GL E +SGG+ RRV+I + +P +L LDEPT+GLD ++E
Sbjct: 131 LVGLPEELLARSPFE----LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMME 186
Query: 240 KVKDIARTG--SIVLMTIHQ----PSYRIQMLLDRIIVLARGRLVYMGSPVAL---PAHL 290
+ + + VL+T H Y D+I+V+ +G + G+P + P L
Sbjct: 187 MFYKLHKEKGLTTVLVT-HSMEDAARYA-----DQIVVMHKGTVFLQGTPREIFADPDEL 240
Query: 291 AGFGRTVPD 299
G +P+
Sbjct: 241 EAIGLDLPE 249
|
Length = 290 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 1e-10
Identities = 54/228 (23%), Positives = 95/228 (41%), Gaps = 13/228 (5%)
Query: 532 WRTALNVIRTPELFLSREIVFAVMALILSSLF-----KNLSHHDFKTINRLLNFYIFAVC 586
W+ R+P+ L R AL++ ++F K + +D + + AV
Sbjct: 1200 WKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMV---IGAMYAAVL 1256
Query: 587 LVFFSSNDAV-PTFIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKL 645
V ++ V P ER +F RE + Y A Y ++ ++ +P+ IQ + I
Sbjct: 1257 FVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYA 1316
Query: 646 LLKLH---SSLLNFWMILFASLITTNAYVMLVSALVPSYIAGYAVVIATTALFFLTCGFF 702
++ + F+ I F S + Y M+ +L P+ A LF L GFF
Sbjct: 1317 MVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFF 1376
Query: 703 LKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGP 750
+ R IP +W W ++I + + L+ +++ E PG +P P
Sbjct: 1377 IPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPG-GAPDP 1423
|
Length = 1470 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 1e-10
Identities = 53/205 (25%), Positives = 83/205 (40%), Gaps = 51/205 (24%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMV 133
L +S GE++ I GP+GAGK++ L LAG +A+ G V G+P+ +
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAG-LAR-PDAGEVLWQGEPIR----RQR 69
Query: 134 SSYVMQDDQLF--------PMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS 185
Y D L+ LT E F RL + ++E L Q+GL
Sbjct: 70 DEY--HQDLLYLGHQPGIKTELTALENLRFYQ--RLHGPGDDE----ALWEALAQVGLA- 120
Query: 186 ATHTYIGNEGR-----RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240
G R +S G++RRV++ + + L LDEP + +D +
Sbjct: 121 ---------GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID-------KQG 164
Query: 241 VKDIART-------GSIVLMTIHQP 258
V + G +V++T HQ
Sbjct: 165 VARLEALLAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 1e-10
Identities = 50/211 (23%), Positives = 101/211 (47%), Gaps = 13/211 (6%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT---TSYMKMVSSYVMQD 140
G+ +AI+G +G+GKST LAG I S G + I+ P+ S+ + QD
Sbjct: 38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTS--GEILINDHPLHFGDYSFRSKRIRMIFQD 95
Query: 141 --DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198
L P L + + + +RL + ++++K+++E L +GL H
Sbjct: 96 PNTSLNPRLRIGQ--ILDFPLRLNTDLEPEQRRKQIFETLRMVGLL-PDHANY---YPHM 149
Query: 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQP 258
++ G+++RV++ +I +P ++ DE + LD + ++ + ++ I + + Q
Sbjct: 150 LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209
Query: 259 SYRIQMLLDRIIVLARGRLVYMGSPVALPAH 289
I+ + D+++V+ G +V GS + A
Sbjct: 210 IGMIKHISDQVLVMHEGEVVERGSTADVLAS 240
|
Length = 267 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 57/218 (26%), Positives = 100/218 (45%), Gaps = 28/218 (12%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSVRIDGKPVTT--- 127
L+++S GE +A++G SG GKST L G LE G+V G+P+
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVG------LESPSQGNVSWRGEPLAKLNR 81
Query: 128 ----SYMKMVSSYVMQD--DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQL 181
++ + + V QD + P TV E + +R S+ + E+ R E+L +
Sbjct: 82 AQRKAFRRDIQ-MVFQDSISAVNPRKTVRE--IIREPLRHLLSLDKAERLARASEMLRAV 138
Query: 182 GLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKV 241
L + + ++ +SGG+ +RV + + +P LL LDE S LD V+ +
Sbjct: 139 DLDDS----VLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLL 194
Query: 242 KDI-ARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
K + + G+ L H ++ R++V+ G++V
Sbjct: 195 KKLQQQFGTACLFITHDLRL-VERFCQRVMVMDNGQIV 231
|
Length = 268 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 59/238 (24%), Positives = 107/238 (44%), Gaps = 38/238 (15%)
Query: 86 EIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGKPVTTSYMKMVS-----SYV 137
E+ AI+GPSG GKSTF+ L I L G + +G + + +V V
Sbjct: 39 EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMV 98
Query: 138 MQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR 197
Q FP ++F+ + P I + KK++ E++++ L+ + +E +
Sbjct: 99 FQKGNPFPQ-SIFDNVAYG------PRIHGTKNKKKLQEIVEK-SLKDVA---LWDEVKD 147
Query: 198 -------GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI 250
+SGG+++R+ I + P +L +DEPTS LD S + E + + +I
Sbjct: 148 RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTI 207
Query: 251 VLMTIH-QPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDGENSLEYL 307
V++T + Q + R+ D+ G LV + ++ PD + +L+Y+
Sbjct: 208 VIVTHNMQQAARVS---DQTAFFYMGELVECNDTNKMFSN--------PDDQRTLDYI 254
|
Length = 259 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-10
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 26/223 (11%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT---SYM 130
+L DIS I+G SG+GKST L G S G + ++G + +
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS--GEILLNGFSLKDIDRHTL 546
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKK--RVYELLD-----QLGL 183
+ +Y+ Q+ +F ++ E + A+ ++S+DE + E+ D LG
Sbjct: 547 RQFINYLPQEPYIFSG-SILENLLLGAK----ENVSQDEIWAACEIAEIKDDIENMPLGY 601
Query: 184 RSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKD 243
T + EG +SGG+++R+++ ++ +L LDE TS LD+ + +V + +
Sbjct: 602 ----QTELSEEG-SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN 656
Query: 244 IARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286
+ ++ H+ S + D+IIVL G+++ GS L
Sbjct: 657 L--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDEL 695
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 2e-10
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 11/186 (5%)
Query: 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALA---GRIAQGSLEGSVRIDGKPVTTSYMKMV 133
D+S + AI+GPSG GKST L ++ + + G + +D + + V
Sbjct: 22 DVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81
Query: 134 S-----SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATH 188
S V Q FP +++++ + A +L ++R E + V L ++ L
Sbjct: 82 SIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDEVK 139
Query: 189 TYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG 248
+ + +SGG+++R+ I I KP ++ +DEP S LD S + E ++++
Sbjct: 140 DRLKSNAME-LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKY 198
Query: 249 SIVLMT 254
+I+++T
Sbjct: 199 TIIIVT 204
|
Length = 252 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 18/196 (9%)
Query: 69 TKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA---GRIAQGSLEGSVRIDG--- 122
KEA + I Q + +I A++GPSG+GKST+L +L I + G + G
Sbjct: 32 KKEA--IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI 89
Query: 123 -KPVTTSY-MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKK--KRVYELL 178
+ Y M+ V Q F +++E FA E +D+K + V L
Sbjct: 90 NRKEINVYEMRKHIGMVFQRPNPFAK-SIYENITFALERAG----VKDKKVLDEIVETSL 144
Query: 179 DQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVV 238
Q L + ++ +SGG+++R+ I I KP +L +DEP S LD S +
Sbjct: 145 KQAALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLE 203
Query: 239 EKVKDIARTGSIVLMT 254
E + ++ + +I+++T
Sbjct: 204 ETMFELKKNYTIIIVT 219
|
Length = 267 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 3e-10
Identities = 58/213 (27%), Positives = 104/213 (48%), Gaps = 19/213 (8%)
Query: 76 HDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY----MK 131
D+S RGEI+ I G GAG++ + L G G EG + IDGKPV +
Sbjct: 279 DDVSFSLRRGEILGIAGLVGAGRTELVQCLFG-AYPGRWEGEIFIDGKPVKIRNPQQAIA 337
Query: 132 MVSSYVMQD---DQLFPMLTVFETFMFAAEVRL--PPSISRDEKKKRVYELLDQLGLRSA 186
+ V +D D + P++ V + AA R I + K + E + +L +++A
Sbjct: 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTA 397
Query: 187 T-HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA 245
+ I +SGG +++ + ++ P +L LDEPT G+D + Y + + + +
Sbjct: 398 SPELAIAR-----LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLV 452
Query: 246 RTG-SIVLMTIHQPSYRIQMLLDRIIVLARGRL 277
+ G +I++++ P + L DR++V+ G+L
Sbjct: 453 QQGVAIIVISSELP--EVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 58/249 (23%), Positives = 107/249 (42%), Gaps = 62/249 (24%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI--AQGSLEGSVR-IDGKPVTTSYMK 131
L ++S + +GE +AI+G +G+GK+TF++ L + G++E + K T K
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82
Query: 132 MVSSYVMQ------------------------DDQLFPMLTVFETFMFAAEVRLPPSISR 167
++ V+Q + QLF T+ + +F + +S+
Sbjct: 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ-TIEKDIIFGP---VSMGVSK 138
Query: 168 DEKKKRVYELLDQLGL------RSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLF 221
+E KKR + ++ +GL RS +SGG++RRV++ + +P L
Sbjct: 139 EEAKKRAAKYIELVGLDESYLQRSPF----------ELSGGQKRRVALAGILAMEPDFLV 188
Query: 222 LDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLD-------RIIVLAR 274
DEPT+GLD ++E ++ + G +++ H LD R I
Sbjct: 189 FDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD--------LDNVLEWTKRTIFFKD 240
Query: 275 GRLVYMGSP 283
G+++ G
Sbjct: 241 GKIIKDGDT 249
|
Length = 305 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 3e-10
Identities = 61/241 (25%), Positives = 115/241 (47%), Gaps = 27/241 (11%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+ FKN+S+ + + D ++ L D+S +G+ +I+G +G+GKST + G
Sbjct: 8 IVFKNVSF----QYQSD------ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIG 57
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSSY---VMQD-DQLFPMLTVFETFMFAAEVRLPP 163
I + G + + + +T + + + V Q+ D F V F E
Sbjct: 58 -IEKVK-SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH--- 112
Query: 164 SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLD 223
++ DE +RV E L Q+ + + +SGG+++RV+I + PS++ LD
Sbjct: 113 AVPYDEMHRRVSEALKQVDM-----LERADYEPNALSGGQKQRVAIAGVLALNPSVIILD 167
Query: 224 EPTSGLDSTSAYSVVEKVKDIARTGSIVLMTI-HQPSYRIQMLLDRIIVLARGRLVYMGS 282
E TS LD + ++++ V+ + +I +++I H S M D +IV+ +G + G+
Sbjct: 168 EATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE--AMEADHVIVMNKGTVYKEGT 225
Query: 283 P 283
P
Sbjct: 226 P 226
|
Length = 269 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 3e-10
Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 33/224 (14%)
Query: 78 ISGQAIRGEIMAIMGPSGAGKSTFLDALA--------GRIAQGSLEGSVRIDGKPVTT-- 127
IS +GE++ I+G SG+GKS + +LA GR+ LE +G+ +
Sbjct: 26 ISYSVKQGEVVGIVGESGSGKS--VSSLAIMGLIDYPGRVMAEKLE----FNGQDLQRIS 79
Query: 128 --SYMKMVSSYV---MQD--DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQ 180
+V + V QD L P TV M A +V ++ +++R +LL+Q
Sbjct: 80 EKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVH--QGGNKKTRRQRAIDLLNQ 137
Query: 181 LGL---RSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSV 237
+G+ S Y +SGG +RV I + I +P LL DEPT+ LD T +
Sbjct: 138 VGIPDPASRLDVY-----PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQI 192
Query: 238 VEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
+E + ++ + ++ L+ I + +IIV+ G++V G
Sbjct: 193 IELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETG 236
|
Length = 326 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (149), Expect = 3e-10
Identities = 60/232 (25%), Positives = 109/232 (46%), Gaps = 24/232 (10%)
Query: 87 IMAIMGPSGAGKSTFLDALA---GRIAQGSLEGSVRIDGKPV-----TTSYMKMVSSYVM 138
+ ++MGP+G+GK+TFL L +++ G V + G+ + + + V +
Sbjct: 49 VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVG-MLF 107
Query: 139 QDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198
Q FPM ++ + + A VR + R E + L ++GL A + + R
Sbjct: 108 QRPNPFPM-SIMDNVL--AGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFR- 163
Query: 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQP 258
+SGG+++ + + + P +L LDEPTS LD T+ + E ++ +A +++++T H
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVT-HNL 222
Query: 259 SYRIQMLLDRIIVLARGRLVYMGSPVAL---PAH------LAGFGRTVPDGE 301
+ + + DR + GRLV G L P H +AG V D +
Sbjct: 223 A-QAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETARYVAGLSGDVKDAK 273
|
Length = 276 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 5e-10
Identities = 77/305 (25%), Positives = 141/305 (46%), Gaps = 70/305 (22%)
Query: 7 MDTSKTLESLLDMDKSLAAKNNNNKDAVVAAAGLKMIPGHGLEFKNLSYSIMKKQKKDGV 66
M +TL ++LD+++ + + K + A G +EF+N++++
Sbjct: 312 MAACQTLFAILDLEQ----EKDEGKRVIERAKG-------DIEFRNVTFT---------- 350
Query: 67 WITKEAYLLHDISGQAIRGEIMAIMGPSGAGKST-------FLDALAGRIAQGSLEGSVR 119
+ KE L +I+ + G+ +A++G SG+GKST F D G I L+G
Sbjct: 351 YPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI---LLDG--- 404
Query: 120 IDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVY---- 175
D + T + ++ + V Q+ LF T+ +A + SR++ ++
Sbjct: 405 HDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYARTEQY----SREQIEEAARMAYA 459
Query: 176 -ELLDQL--GLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST 232
+ ++++ GL T IG G +SGG+R+R++I ++ +L LDE TS LD+
Sbjct: 460 MDFINKMDNGL----DTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
Query: 233 SA---YSVVEKV-KDIARTGSIV----LMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284
S + ++++ K+ RT S+V L TI + D I+V+ G +V G+
Sbjct: 515 SERAIQAALDELQKN--RT-SLVIAHRLSTIEKA--------DEILVVEDGEIVERGTHA 563
Query: 285 ALPAH 289
L A
Sbjct: 564 ELLAQ 568
|
Length = 582 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 6e-10
Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 13/204 (6%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYV---MQDD 141
G AI+GP+G GKST L L+ + G V +DG+ + K V+ + Q+
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHIQHYASKEVARRIGLLAQNA 90
Query: 142 QLFPMLTVFETFMFAAEVRLP--PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199
+TV E A R P P +R K+ E +++ T++ ++ +
Sbjct: 91 TTPGDITVQE---LVARGRYPHQPLFTRWRKED---EEAVTKAMQATGITHLADQSVDTL 144
Query: 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259
SGG+R+R I + + + +++ LDEPT+ LD + ++E + ++ R L +
Sbjct: 145 SGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL 204
Query: 260 YRIQMLLDRIIVLARGRLVYMGSP 283
+ +I L G++V G+P
Sbjct: 205 NQACRYASHLIALREGKIVAQGAP 228
|
Length = 265 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 8e-10
Identities = 43/195 (22%), Positives = 95/195 (48%), Gaps = 18/195 (9%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFL---DALAGRIAQGSLEGSVRIDGKPVTT 127
E + L+DI+ + + A++GPSG GKST L + + I + G + +G+ +
Sbjct: 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77
Query: 128 SYMKMVS-----SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLG 182
S +V+ V Q FP +++E + P I ++ KK + ++++
Sbjct: 78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAYG------PRIHGEKNKKTLDTIVEKSL 130
Query: 183 LRSATHTYIG---NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVE 239
+A + ++ +SGG+++R+ I + P ++ +DEP S LD + + +
Sbjct: 131 KGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIED 190
Query: 240 KVKDIARTGSIVLMT 254
++D+ + +++++T
Sbjct: 191 LIEDLKKEYTVIIVT 205
|
Length = 253 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-09
Identities = 74/280 (26%), Positives = 113/280 (40%), Gaps = 37/280 (13%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR--IAQGSLEGSVRIDGKPVTTSYMK 131
LL D+S RG++ ++G +G+GKST L +L + I++G + I
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSI----------- 723
Query: 132 MVSSYVMQDDQLFPM-LTVFETFMFAAEVRLPPSISRDEKKKRVYEL---LDQLGLRSAT 187
+YV Q Q + M TV +F E +R RV +L L QLG
Sbjct: 724 ---AYVPQ--QAWIMNATVRGNILFFDEED----AARLADAVRVSQLEADLAQLG--GGL 772
Query: 188 HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART 247
T IG +G +SGG++ RVS+ + + LD+P S LD+ VVE+ A
Sbjct: 773 ETEIGEKG-VNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALA 831
Query: 248 GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA-----LPAHLAGFGRTVPDG-E 301
G ++ HQ + D ++ L GR+ + GS L A LA + D E
Sbjct: 832 GKTRVLATHQ--VHVVPRADYVVALGDGRVEFSGSSADFMRTSLYATLAAELKENKDSKE 889
Query: 302 NSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTP 341
+ + + V P V Q + A
Sbjct: 890 GDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALD 929
|
Length = 1560 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 59/247 (23%), Positives = 108/247 (43%), Gaps = 41/247 (16%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG--SLEGSVRIDGKPVTTSYM- 130
L+H +S RG ++A++G SG+GKS A G + G G V +DGKPV +
Sbjct: 18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR 77
Query: 131 -KMVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
+ +++ +MQ+ + P+ T M ++ + + L+ +GL
Sbjct: 78 GRKIAT-IMQNPRSAFNPLHT-----MHTHARETCLALGKPADDATLTAALEAVGL---- 127
Query: 188 HTYIGNEGRR------GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKV 241
N R +SGG +R+ I + ++ + + DEPT+ LD + +++ +
Sbjct: 128 ----ENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLL 183
Query: 242 KDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG----------SPVA---LP 287
+ I + +L+ H + L D + V++ GR+V G V +
Sbjct: 184 ESIVQKRALGMLLVTHDMGV-VARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSLVS 242
Query: 288 AHLAGFG 294
AHLA +G
Sbjct: 243 AHLALYG 249
|
Length = 254 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 1e-09
Identities = 62/259 (23%), Positives = 98/259 (37%), Gaps = 61/259 (23%)
Query: 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDAL 105
HG+ +NLS Q LL +++ + GE + I G SGAGK++ L AL
Sbjct: 391 HGITLENLSLRTPDGQT-----------LLSELNFEVRPGERLLITGESGAGKTSLLRAL 439
Query: 106 AG--RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP- 162
AG G + M D LP
Sbjct: 440 AGLWPWGSGRIS----------------------MPADS--------ALLFLPQRPYLPQ 469
Query: 163 ---------PSISRDEKKKRVYELLDQLGL-RSATHTYIGNEGR--RGVSGGERRRVSIG 210
P+ + D + +L ++GL A + E R R +SGGE++R++
Sbjct: 470 GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAER--LDEEDRWDRVLSGGEQQRLAFA 527
Query: 211 IDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRII 270
++HKP +FLDE TS LD + + + +K+ + V+ H+P+ + R +
Sbjct: 528 RLLLHKPKWVFLDEATSALDEETEDRLYQLLKE-ELPDATVISVGHRPT--LWNFHSRQL 584
Query: 271 VLARGRLVYMGSPVALPAH 289
L P ALP
Sbjct: 585 ELLDDAGGQNLKPPALPTE 603
|
Length = 604 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 1e-09
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 14/179 (7%)
Query: 86 EIMAIMGPSGAGKSTFL-------DALAGRIAQGSL---EGSVRIDGKPVTTSYMKMVSS 135
++ A++GPSG GKSTFL D G +G + +V I V ++M S
Sbjct: 43 QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRIS 102
Query: 136 YVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195
V Q FP ++FE + +R R ++RV L L +G+
Sbjct: 103 MVFQKPNPFPK-SIFENVAYGLRIR--GVKRRSILEERVENALRNAALWDEVKDRLGDLA 159
Query: 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMT 254
+SGG+++R+ I + P +L DEPTS LD + S+ E + D+ +I+++T
Sbjct: 160 F-NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVT 217
|
Length = 265 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 27/190 (14%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQL 143
E++ I+GP+G GK+TF+ LAG + EG + I+ V+ + + Y L
Sbjct: 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPD--EGDIEIELDTVSYKPQYIKADYEGTVRDL 81
Query: 144 FPMLT--VFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201
+T + F E+ P I + +LD+ +SG
Sbjct: 82 LSSITKDFYTHPYFKTEIAKPLQIEQ---------ILDRE--------------VPELSG 118
Query: 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYR 261
GE +RV+I + + LDEP++ LD + ++ A +
Sbjct: 119 GELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIM 178
Query: 262 IQMLLDRIIV 271
I L DR+IV
Sbjct: 179 IDYLADRLIV 188
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 2e-09
Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 25/215 (11%)
Query: 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS-- 134
D S + G ++G +G GKST L+G + +G+V GKP+ S +++
Sbjct: 23 DFSLSPVTG----LVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDYSKRGLLALR 76
Query: 135 ---SYVMQDDQLFPMLTVFETFM---FAAEVRLPPSISRDEKKKRVYELLDQLGLRSATH 188
+ V QD P +F T + A +R + E +RV E L + + H
Sbjct: 77 QQVATVFQD----PEQQIFYTDIDSDIAFSLR-NLGVPEAEITRRVDEALTLVDAQHFRH 131
Query: 189 TYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG 248
I + +S G+++RV+I ++ + L LDEPT+GLD ++ ++ I G
Sbjct: 132 QPI-----QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG 186
Query: 249 SIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
+ V+++ H I + D + VL +G+++ G+P
Sbjct: 187 NHVIISSHDIDL-IYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 28/222 (12%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMV 133
+L+D+S G+I A++GP+G GKST L A + S G+V + KP++ + +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQS--GTVFLGDKPISMLSSRQL 74
Query: 134 SSYVMQDDQLFPM---LTVFETFMFAAEVRLPPSIS-----RDEKKKRVYELLDQLGLRS 185
+ + Q +TV E + P +S E RV + ++Q +
Sbjct: 75 ARRLALLPQHHLTPEGITVRELVAYGRS----PWLSLWGRLSAEDNARVNQAMEQTRI-- 128
Query: 186 ATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLD---STSAYSVVEKVK 242
++ + +SGG+R+R + + + ++ LDEPT+ LD ++ ++
Sbjct: 129 ---NHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELN 185
Query: 243 DIARTGSIVLMTIHQPS-YRIQMLLDRIIVLARGRLVYMGSP 283
+T VL ++Q S Y D ++VLA G ++ G+P
Sbjct: 186 TQGKTVVTVLHDLNQASRY-----CDHLVVLANGHVMAQGTP 222
|
Length = 255 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 3e-09
Identities = 45/179 (25%), Positives = 90/179 (50%), Gaps = 18/179 (10%)
Query: 87 IMAIMGPSGAGKSTFLDA---LAGRIAQGSLEGSVRIDGKPVTTSYMKMVS-----SYVM 138
+ AI+GPSG GKSTFL A + I G++ DG+ + + V V
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVF 126
Query: 139 QDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR- 197
Q FP ++F+ + P + KK++ E++++ ++A + + +
Sbjct: 127 QKPNPFPK-SIFDNIAYG------PRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKN 179
Query: 198 --GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMT 254
G+SGG+++R+ + + +P +L LDEPTS LD + + + ++++ + +I+++T
Sbjct: 180 ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVT 238
|
Length = 286 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 4e-09
Identities = 63/220 (28%), Positives = 96/220 (43%), Gaps = 38/220 (17%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS---LEGSVRIDGKPVTTSYMK 131
LH +GQ + A++G SG GKST L LAG + L G+ + T M
Sbjct: 33 LHIPAGQFV-----AVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLM- 86
Query: 132 MVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYI 191
QD +L P V + V L + + + + L +GL
Sbjct: 87 ------FQDARLLPWKKVIDN------VGLG---LKGQWRDAALQALAAVGLADR----- 126
Query: 192 GNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART---- 247
NE +SGG+++RV++ +IH+P LL LDEP LD A + +E I
Sbjct: 127 ANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALD---ALTRIEMQDLIESLWQQH 183
Query: 248 GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALP 287
G VL+ H S + M DR++++ G+ + + V LP
Sbjct: 184 GFTVLLVTHDVSEAVAM-ADRVLLIEEGK-IGLDLTVDLP 221
|
Length = 257 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 5e-09
Identities = 49/215 (22%), Positives = 97/215 (45%), Gaps = 22/215 (10%)
Query: 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY----MKM 132
DIS RGEI+ G G+G++ ++ L G G +R++GK ++ +K
Sbjct: 281 DISFSVCRGEILGFAGLVGSGRTELMNCLFG--VDKRAGGEIRLNGKDISPRSPLDAVKK 338
Query: 133 VSSYVMQ---DDQLFPMLTVFETFMFAAEVRLPPS------ISRDEKKKRVYELLDQLGL 183
+Y+ + D+ FP ++ + + ++ ++++ + L L
Sbjct: 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLAL 398
Query: 184 RSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKD 243
+ + N+ +SGG +++V I + P ++ DEPT G+D + + + ++
Sbjct: 399 KCHSV----NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQ 454
Query: 244 IARTGSIVLMTIHQ-PSYRIQMLLDRIIVLARGRL 277
+A G ++LM + P I + DRI V GRL
Sbjct: 455 LADDGKVILMVSSELP--EIITVCDRIAVFCEGRL 487
|
Length = 510 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 5e-09
Identities = 63/231 (27%), Positives = 120/231 (51%), Gaps = 30/231 (12%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT---SYMK 131
L +I+ +A++G +G+GKST L G EG +R+DG+P+++ S ++
Sbjct: 357 LQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT--EGEIRLDGRPLSSLSHSVLR 414
Query: 132 MVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLD--QL-----GLR 184
+ V QD P++ +TF+ A V L RD +++V++ L+ QL L
Sbjct: 415 QGVAMVQQD----PVVLA-DTFL--ANVTL----GRDISEEQVWQALETVQLAELARSLP 463
Query: 185 SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI 244
+T +G +G +S G+++ +++ ++ P +L LDE T+ +DS + ++ + + +
Sbjct: 464 DGLYTPLGEQGNN-LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAV 522
Query: 245 ARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGR 295
++V++ H+ S ++ D I+VL RG+ V G+ L LA GR
Sbjct: 523 REHTTLVVIA-HRLSTIVEA--DTILVLHRGQAVEQGTHQQL---LAAQGR 567
|
Length = 592 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 5e-09
Identities = 59/246 (23%), Positives = 109/246 (44%), Gaps = 46/246 (18%)
Query: 44 PGHG-LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFL 102
P HG +E +NLS +L ++S + GE + I+G +GAGKST +
Sbjct: 2 PEHGEIEVENLSVRYAPDLPP----------VLKNVSFKVKAGEKIGIVGRTGAGKSTLI 51
Query: 103 DALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSS---YVMQDDQLFPMLTVFETFMFAAEV 159
AL R + EG + IDG ++T ++ + S + QD P L F+ +
Sbjct: 52 LALF-RFLEAE-EGKIEIDGIDISTIPLEDLRSSLTIIPQD----PTL-------FSGTI 98
Query: 160 RLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSL 219
R + + +Y L +EG +S G+R+ + + ++ +P +
Sbjct: 99 RSNLDPFDEYSDEEIYGALRV------------SEGGLNLSQGQRQLLCLARALLKRPRV 146
Query: 220 LFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL--DRIIVLARGRL 277
L LDE T+ +D + + + +++ T S +L H R++ ++ D+I+V+ G +
Sbjct: 147 LVLDEATASIDYATDALIQKTIRE-EFTNSTILTIAH----RLRTIIDYDKILVMDAGEV 201
Query: 278 VYMGSP 283
P
Sbjct: 202 KEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 5e-09
Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 44/223 (19%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQ-GSLEGSVRIDGKPVTTSYMKMVS-------SY 136
GE + I+G SG+GKS AL G +A G + GS +G+ + K ++ S
Sbjct: 42 GETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISM 101
Query: 137 VMQD--DQLFPMLTVFETFM--------------FAAEVRLPPSISRDEKKKRVYELLDQ 180
+ QD L P + V E M F VR+ ++ E +KR
Sbjct: 102 IFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKR------- 154
Query: 181 LGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240
++ H + SGG R+RV I + ++ +P LL DEPT+ LD T ++
Sbjct: 155 --MKMYPHEF---------SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTL 203
Query: 241 VKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
+ ++ R + ++M H + + D+++V+ GR + G+
Sbjct: 204 LNELKREFNTAIIMITHDLGV-VAGICDKVLVMYAGRTMEYGN 245
|
Length = 330 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 6e-09
Identities = 48/209 (22%), Positives = 93/209 (44%), Gaps = 20/209 (9%)
Query: 70 KEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP--VTT 127
E Y+L +++ + G+++A++G SGAGK+T L + G E GK
Sbjct: 394 IERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKN 453
Query: 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
+ ++ + + F +T+ E S + D E+L++ GL A
Sbjct: 454 TVSALIPG---EYEPEFGEVTILEHLR---------SKTGDLNAA--VEILNRAGLSDA- 498
Query: 188 HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART 247
+ +S G++ R + + +P++L +DE + LD +A V K+ ++AR
Sbjct: 499 --VLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELARE 556
Query: 248 GSIVLMTI-HQPSYRIQMLLDRIIVLARG 275
I L+ + H+P + D +I++ G
Sbjct: 557 AGITLIVVTHRPEVGNALRPDTLILVGYG 585
|
Length = 593 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 1e-08
Identities = 55/203 (27%), Positives = 92/203 (45%), Gaps = 21/203 (10%)
Query: 64 DGVWITKEAYL-LHDISGQAIRGEIMAIMGPSGAGKSTFL-------DALAGRIAQGSLE 115
+GV + +L L D+ + +I+A +GPSG GKST L D + G +G L
Sbjct: 24 EGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLL 83
Query: 116 GSVR-IDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRV 174
R I + + ++ V Q FP +++E FA + K +
Sbjct: 84 YRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRA--------NGYKGNL 134
Query: 175 YELLDQLGLRSATHTYIGN---EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDS 231
EL++ R+A + + E +SGG+++R+ I I KP +L +DEP S LD
Sbjct: 135 DELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDP 194
Query: 232 TSAYSVVEKVKDIARTGSIVLMT 254
S V E ++ +I+++T
Sbjct: 195 ISTRQVEELCLELKEQYTIIMVT 217
|
Length = 274 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-08
Identities = 53/213 (24%), Positives = 104/213 (48%), Gaps = 16/213 (7%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT---TSYMKMVSSYVMQD- 140
G+ +AI+G +G+GKST LAG I S G + ID P+ SY + QD
Sbjct: 39 GQTLAIIGENGSGKSTLAKMLAGMIEPTS--GELLIDDHPLHFGDYSYRSQRIRMIFQDP 96
Query: 141 -DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199
L P + + F +RL + ++++K++ E L Q+GL +Y + +
Sbjct: 97 STSLNPRQRISQILDFP--LRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHM----L 150
Query: 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259
+ G+++R+ + +I +P ++ DE + LD + ++ + ++ I + + Q
Sbjct: 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL 210
Query: 260 YRIQMLLDRIIVLARGRLVYMGSP---VALPAH 289
++ + D+++V+ +G +V GS +A P H
Sbjct: 211 GMMKHISDQVLVMHQGEVVERGSTADVLASPLH 243
|
Length = 267 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 2e-08
Identities = 66/238 (27%), Positives = 113/238 (47%), Gaps = 37/238 (15%)
Query: 76 HDISGQAIRGEIMAIMGPSGAGKS-TFLDAL-----------AGRI--AQGSL----EGS 117
+D+S Q GE +A++G SG+GKS T L L +G I SL E +
Sbjct: 26 NDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQT 85
Query: 118 VR-IDGKPVTTSYMK-MVSSYVMQDDQLFPMLTVFETFMFAAEV-RLPPSISRDEKKKRV 174
+R + G + + + MVS L P+ T+ + EV L + R+ + +
Sbjct: 86 LRGVRGNKIAMIFQEPMVS--------LNPLHTLEKQL---YEVLSLHRGMRREAARGEI 134
Query: 175 YELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSA 234
LD++G+R A + +SGGER+RV I + ++ +P LL DEPT+ LD +
Sbjct: 135 LNCLDRVGIRQAAKRL--TDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQ 192
Query: 235 YSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL---PAH 289
+++ ++++ + ++ L+ I ++ L DR+ V+ GR V L P H
Sbjct: 193 AQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAPTH 250
|
Length = 529 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 63/219 (28%), Positives = 94/219 (42%), Gaps = 39/219 (17%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT--------SYMKMVSSY 136
GE+ AIMGP+G+GKST LAGR G+V GK + + M Y
Sbjct: 27 GEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQY 86
Query: 137 VMQ----DDQLFPMLTVFETFMFAAEVRLPPSISR------DEKKKRVYELLDQLGLRSA 186
++ +Q F + R + R E+K + ++ + L RS
Sbjct: 87 PVEIPGVSNQFFLQTALNAV----RSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV 142
Query: 187 THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246
G SGGE++R I + +P L LDE SGLD + V + V + R
Sbjct: 143 N---------VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSL-R 192
Query: 247 TG--SIVLMTIHQPSYRIQMLL--DRIIVLARGRLVYMG 281
G S +++T +Q RI + D + VL +GR+V G
Sbjct: 193 DGKRSFIIVTHYQ---RILDYIKPDYVHVLYQGRIVKSG 228
|
Length = 248 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 4e-08
Identities = 57/217 (26%), Positives = 104/217 (47%), Gaps = 25/217 (11%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY----M 130
++D+S +GEI+ + G GAG++ + L G A G V +DG V T +
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYG--ALPRTSGYVTLDGHEVVTRSPQDGL 325
Query: 131 KMVSSYVMQD---DQLFPMLTVFETFMFAAE---VRLPPSISRDEKKKRVYELLDQLGLR 184
Y+ +D D L ++V E A R S+ ++++ V + + ++
Sbjct: 326 ANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIK 385
Query: 185 SAT-HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLD---STSAYSVVEK 240
+ + IG +SGG +++V+I ++ +P +L LDEPT G+D Y ++ +
Sbjct: 386 TPSMEQAIGL-----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQ 440
Query: 241 VKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277
K A SI+L++ P + + DRI+V+ GR+
Sbjct: 441 FK--AEGLSIILVSSEMP--EVLGMSDRILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 7e-08
Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 30/222 (13%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
L ++ GEI A++G +GAGKST + L+G +G++ I+ +Y K+
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSG--IHEPTKGTITINNI----NYNKLDH 74
Query: 135 --------SYVMQDDQLFPMLTVFETFMFAAEVRLP-------PSISRDEKKKRVYELLD 179
+ Q+ + LTV E R I E + R +L
Sbjct: 75 KLAAQLGIGIIYQELSVIDELTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMMLL 131
Query: 180 QLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVE 239
++GL+ + N +S ++ + I ++ ++ +DEPTS L + +
Sbjct: 132 RVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFL 186
Query: 240 KVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
+ + + G+ ++ H+ + I+ + DR V+ G V G
Sbjct: 187 IMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 7e-08
Identities = 55/205 (26%), Positives = 93/205 (45%), Gaps = 25/205 (12%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS----SYVMQD 140
G +MA++G +GAGKST + L G + + GS+ GK VT + K + Q+
Sbjct: 30 GRVMALVGENGAGKSTMMKVLTGIYTRDA--GSILYLGKEVTFNGPKSSQEAGIGIIHQE 87
Query: 141 DQLFPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199
L P LT+ E E I + +LL +L LR ++ +G +
Sbjct: 88 LNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGE-----L 142
Query: 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST---SAYSVVEKVKDIARTGSIVLMTIH 256
S GE++ V I + + ++ +DEPT L T S + V+ ++K R IV +
Sbjct: 143 SIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGR--GIVYI--- 197
Query: 257 QPSYRIQMLL---DRIIVLARGRLV 278
S+R++ + D + V G+ +
Sbjct: 198 --SHRLKEIFEICDDVTVFRDGQFI 220
|
Length = 501 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 7e-08
Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 14/179 (7%)
Query: 84 RGEIMAIMGPSGAGKSTFLDAL--AGRIAQG-SLEGSVR-----IDGKPVTTSYMKMVSS 135
+ EI +GPSG GKST L +L + +G EG V + GK V ++
Sbjct: 33 KNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIG 92
Query: 136 YVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195
V Q F M ++F+ F +RL + + + RV L L + G
Sbjct: 93 MVFQQPNPFSM-SIFDNVAFG--LRL--NRYKGDLGDRVKHALQGAALWDEVKDKLKVSG 147
Query: 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMT 254
+SGG+++R+ I I +P +L LDEP S LD + V E + ++ + +I L+T
Sbjct: 148 L-SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVT 205
|
Length = 261 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 8e-08
Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 32/219 (14%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
L DI+ + G ++AI+G +G GK++ + A+ G ++ SV I G + +Y+ VS
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAE-TSSVVIRG---SVAYVPQVS 688
Query: 135 SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNE 194
++F A VR D + +R + +D L+ G +
Sbjct: 689 ------------------WIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRD 730
Query: 195 ----GRRGV--SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK-VKDIART 247
G RGV SGG+++RVS+ + + D+P S LD+ A+ V + +KD +
Sbjct: 731 LTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKG 790
Query: 248 GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286
+ VL+T +Q + M DRII+++ G + G+ L
Sbjct: 791 KTRVLVT-NQLHFLPLM--DRIILVSEGMIKEEGTFAEL 826
|
Length = 1495 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 1e-07
Identities = 51/187 (27%), Positives = 77/187 (41%), Gaps = 21/187 (11%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLF 144
GE + + G +GAGK+T L LAG + S G ++IDGK T +Y+ L
Sbjct: 37 GEALLVQGDNGAGKTTLLRVLAGLLHVES--GQIQIDGKTATRGDRSRFMAYLGHLPGLK 94
Query: 145 PMLTVFET--FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202
L+ E F+ R K+ L +GL T + R +S G
Sbjct: 95 ADLSTLENLHFLCGLHGRRA--------KQMPGSALAIVGLAGYEDTLV-----RQLSAG 141
Query: 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIH----QP 258
+++R+++ + L LDEP + LD V + R G L+T H P
Sbjct: 142 QKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAP 201
Query: 259 SYRIQML 265
R +ML
Sbjct: 202 PVRTRML 208
|
Length = 214 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 2e-07
Identities = 60/297 (20%), Positives = 116/297 (39%), Gaps = 59/297 (19%)
Query: 540 RTPELFLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYI----FAVCLVFFSSNDA 595
R +++ + + ++A I S++F H + YI F++ + F+
Sbjct: 531 RNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDG--ALYIGALLFSMIINMFNGFAE 588
Query: 596 VPTFIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSSLLN 655
+ IQ +F ++ + ++ + + L+ +P I+ + + IT
Sbjct: 589 LALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVIT------------ 636
Query: 656 FWMILFASLITTNAYVMLVSALVPSYIAGY---------AVVIATTA------LFFLTCG 700
++ I FA + +L+ L+ AG ++IA T L FL G
Sbjct: 637 YYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGG 696
Query: 701 FFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGPLGEVKLSKLH 760
F L +G IP +W W +++S + Y F AL NE N D
Sbjct: 697 FILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASD--------------- 741
Query: 761 NTTAALLRPDCTLIGEDIVYSMDIQIENIWFDILI--LLAWGVLYRLFFYLVLRFYS 815
N+T +G ++ D+ + W+ I + LL + +L+ + F L L + +
Sbjct: 742 NSTR---------LGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789
|
Length = 1470 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-07
Identities = 57/201 (28%), Positives = 85/201 (42%), Gaps = 66/201 (32%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+E +NLS K L+ D+S + G I+ ++GP+GAGKST + G
Sbjct: 323 IEAENLSKGFGDKL------------LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG 370
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISR 167
+ S G+++I G+ V +Y+ DQ SR
Sbjct: 371 QEQPDS--GTIKI-GETVKLAYV----------DQ-----------------------SR 394
Query: 168 D--EKKKRVYEL----LD--QLGLRS-ATHTYIGNEGRRG---------VSGGERRRVSI 209
D + K V+E LD QLG R + Y+G +G +SGGER RV +
Sbjct: 395 DALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHL 454
Query: 210 GIDIIHKPSLLFLDEPTSGLD 230
+ ++L LDEPT+ LD
Sbjct: 455 AKTLKSGGNVLLLDEPTNDLD 475
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 2e-07
Identities = 49/151 (32%), Positives = 73/151 (48%), Gaps = 23/151 (15%)
Query: 87 IMAIMGPSGAGKSTFLDALAG--RIAQG--SLEGSVRID-GKPVTTSYMKMVSSYVMQDD 141
I AI G SGAGK++ ++A++G R +G L G V D K + K YV QD
Sbjct: 26 ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDA 85
Query: 142 QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELL--DQLGLRSATHTYIGNEGRRGV 199
+LFP V +R + S + ++ LL + L L + +
Sbjct: 86 RLFPHYKV------RGNLRYGMAKSMVAQFDKIVALLGIEPL-LDRYPGS---------L 129
Query: 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLD 230
SGGE++RV+IG ++ P LL +DEP + LD
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 70/243 (28%)
Query: 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSY 136
D+S GE++ I+G SG+GK+T L ++GR+ + G+V +Y
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDA--GTV----------------TY 65
Query: 137 VMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR---SATHTYIGN 193
M+D Q + T+ E AE R + R E D GLR SA GN
Sbjct: 66 RMRDGQPRDLYTMSE-----AERRR---LLRTEWGFVHQNPRD--GLRMQVSAG----GN 111
Query: 194 EGRRGVSGGER-------------RRVSIGID----------------------IIHKPS 218
G R ++ G R V I +D ++ +P
Sbjct: 112 IGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPR 171
Query: 219 LLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
L+F+DEPT GLD + +++ ++ + R + ++ + ++L DR++V+ +G++V
Sbjct: 172 LVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVV 231
Query: 279 YMG 281
G
Sbjct: 232 ESG 234
|
Length = 258 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 2e-07
Identities = 41/140 (29%), Positives = 73/140 (52%), Gaps = 9/140 (6%)
Query: 135 SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNE 194
S V Q+ LF M +++E F E + R K + E ++ L + T+ +G
Sbjct: 1299 SIVSQEPMLFNM-SIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTN--VGPY 1355
Query: 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMT 254
G+ +SGG+++R++I ++ +P +L LDE TS LDS S + + + DI ++T
Sbjct: 1356 GK-SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIIT 1414
Query: 255 IHQPSYRIQML--LDRIIVL 272
I ++RI + D+I+V
Sbjct: 1415 I---AHRIASIKRSDKIVVF 1431
|
Length = 1466 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 61/203 (30%), Positives = 92/203 (45%), Gaps = 42/203 (20%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLF 144
G ++AI+G +G GK++ + A+ G + S + SV I G T +Y+ VS
Sbjct: 643 GSLVAIVGSTGEGKTSLISAMLGELPPRS-DASVVIRG---TVAYVPQVS---------- 688
Query: 145 PMLTVFETFMFAAEVR------LPPSISRDEKKKRVYELLDQLG-LRSATHTYIGNEGRR 197
++F A VR P R E+ V L L L T I G R
Sbjct: 689 --------WIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEI---GER 737
Query: 198 GV--SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK-VKDIARTGSIVLMT 254
GV SGG+++RVS+ + + D+P S LD+ V +K +KD R + VL+T
Sbjct: 738 GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVT 797
Query: 255 --IHQPSYRIQMLLDRIIVLARG 275
+H S +DRII++ G
Sbjct: 798 NQLHFLSQ-----VDRIILVHEG 815
|
Length = 1622 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 51/228 (22%), Positives = 103/228 (45%), Gaps = 47/228 (20%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV--TTSYMKM 132
+ D+S +GEI+ I G GA ++ ++ L G + + G++ + GK + + +
Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSA--GTITLHGKKINNHNANEAI 321
Query: 133 VSSYVMQDDQ-----LFPMLTV-FETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA 186
+ + ++ ++ L + F + IS K LLD ++S
Sbjct: 322 NHGFALVTEERRSTGIYAYLDIGFNSL-----------ISNIRNYKNKVGLLDNSRMKSD 370
Query: 187 T--------------HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST 232
T T IG+ +SGG +++V IG ++ +P +L LDEPT G+D
Sbjct: 371 TQWVIDSMRVKTPGHRTQIGS-----LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVG 425
Query: 233 SAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL---DRIIVLARGRL 277
+ + + + + ++A+ +++ S + LL DRI+V++ G +
Sbjct: 426 AKFEIYQLIAELAKKDKGIIII----SSEMPELLGITDRILVMSNGLV 469
|
Length = 491 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 4e-07
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126
L +S RGE+ A++G +GAGKST + L+G S G + +DGK V+
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS--GEILVDGKEVS 65
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 4e-07
Identities = 51/215 (23%), Positives = 106/215 (49%), Gaps = 30/215 (13%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMV 133
+L +IS G+ + ++G +G+GKST L A + + EG ++IDG S+ +
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGDIQIDG----VSWNSVP 71
Query: 134 SSYVMQDDQLFPMLTVFETFMFAAEVRL---PPSISRDEKKKRVYELLDQLGLRSATHTY 190
+ + + F ++ + F+F+ R P DE+ ++++ +++GL+S +
Sbjct: 72 ---LQKWRKAFGVIPQ-KVFIFSGTFRKNLDPYGKWSDEE---IWKVAEEVGLKSVIEQF 124
Query: 191 IGN------EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI 244
G +G +S G ++ + + ++ K +L LDEP++ LD + Y V+ K
Sbjct: 125 PGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPIT-YQVIRKTLKQ 183
Query: 245 ARTGSIVLMTIHQPSYRIQMLLD--RIIVLARGRL 277
A V+++ H RI+ +L+ R +V+ ++
Sbjct: 184 AFADCTVILSEH----RIEAMLECQRFLVIEENKV 214
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 7e-07
Identities = 55/244 (22%), Positives = 96/244 (39%), Gaps = 51/244 (20%)
Query: 25 AKNNNNKDAVVAAAGLKMIPGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIR 84
N + V+ L + G L KN+ I K Q
Sbjct: 1 TSTLNGTETVLRTENLNVYYGSFLAVKNVWLDIPKNQ----------------------- 37
Query: 85 GEIMAIMGPSGAGKSTFL---DALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS-----SY 136
I A +GPSG GKST L + L I +EG V GK + + V
Sbjct: 38 --ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGM 95
Query: 137 VMQDDQLFPMLTVFETFMFAAEVR-----LPPSISRDEKKKRVY-ELLDQLGLRSATHTY 190
V Q FP ++++ + A + + + R ++ ++ E+ D+L
Sbjct: 96 VFQKPNPFPK-SIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKL--------- 145
Query: 191 IGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI 250
+ +SGG+++R+ I I +P ++ +DEP S LD S + E + ++ +I
Sbjct: 146 --KQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTI 203
Query: 251 VLMT 254
+++T
Sbjct: 204 IIVT 207
|
Length = 264 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 8e-07
Identities = 54/189 (28%), Positives = 80/189 (42%), Gaps = 39/189 (20%)
Query: 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRI-DGKPVTTSYMK 131
+L DIS G + ++G +GAGKST L +AG + + G R G V
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG-VDK-EFNGEARPAPGIKV------ 70
Query: 132 MVSSYVMQDDQLFPMLTVFETFMFA-AEVR-------------LPPSISRD---EKKKRV 174
Y+ Q+ QL P TV E AE++ P D ++ +
Sbjct: 71 ---GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAEL 127
Query: 175 YELLDQLGLRSATHTY-IGNEGRR---------GVSGGERRRVSIGIDIIHKPSLLFLDE 224
E++D I + R +SGGERRRV++ ++ KP +L LDE
Sbjct: 128 QEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDE 187
Query: 225 PTSGLDSTS 233
PT+ LD+ S
Sbjct: 188 PTNHLDAES 196
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 8e-07
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+E +NLS + K LL DIS G+ + ++G +GAGKST L +AG
Sbjct: 1 IELENLSKTYGGKL------------LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG 48
Query: 108 RIAQGSLEGSVRIDGKPVTTSYM 130
+ EG V G V Y
Sbjct: 49 ELEPD--EGIVTW-GSTVKIGYF 68
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 2e-06
Identities = 70/268 (26%), Positives = 121/268 (45%), Gaps = 43/268 (16%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE-GSVRIDGKPVTT---SY 129
+LH +S E + ++G +GAGKS+ L+AL RI + LE G + ID V +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF-RIVE--LEKGRIMIDDCDVAKFGLTD 1307
Query: 130 MKMVSSYVMQDDQLFPMLTVFETFMFAA--EVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
++ V S + Q LF F F+ + L ++ R K + + GL +
Sbjct: 1308 LRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDR--NPFGLDAEV 1365
Query: 188 HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART 247
+EG S G+R+ +S+ ++ + +L LDE T+ +D RT
Sbjct: 1366 -----SEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVD--------------VRT 1406
Query: 248 GSIVLMTIHQPSYRIQMLL-----------DRIIVLARGRLVYMGSPVALPAH-LAGFGR 295
S++ TI + ML+ D+I+VL+ G+++ SP L + + F R
Sbjct: 1407 DSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFR 1466
Query: 296 TV-PDGENSLEYLLDVIKEYDESTVGLG 322
V G + +YL +++ E E+ + LG
Sbjct: 1467 MVHSTGPANAQYLSNLVFERRENGMSLG 1494
|
Length = 1495 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-06
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG-SIVLMTIHQP 258
S GER+ V I + LL LDEPT+ L + + ++ + G +++ ++ H+
Sbjct: 84 SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFIS-HRL 142
Query: 259 SYRIQMLLDRIIVLARGRLV 278
+ + DR+ VL GR+V
Sbjct: 143 D-EVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 59/242 (24%), Positives = 103/242 (42%), Gaps = 27/242 (11%)
Query: 52 NLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ 111
N+SY+ KK E L++ S + ++ ++G +G+GKST + G I
Sbjct: 11 NVSYTYAKKTPF-------EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63
Query: 112 GSLEGSVRIDGKPVTTSYMKMVS------SYVMQDDQLFPMLTVFETFMFAAEVRLPP-- 163
+ + V P +K V V Q FP +F+ ++ P
Sbjct: 64 ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQ----FPEYQLFQE-TIEKDIAFGPVN 118
Query: 164 -SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFL 222
++ E K+V ELL L Y+ +SGG++RRV++ I + L L
Sbjct: 119 LGENKQEAYKKVPELLK---LVQLPEDYVKRSPFE-LSGGQKRRVALAGIIAMDGNTLVL 174
Query: 223 DEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
DEPT GLD + + + + ++M H ++ + D +IV+ G+++ +G
Sbjct: 175 DEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVISIG 233
Query: 282 SP 283
SP
Sbjct: 234 SP 235
|
Length = 289 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 2e-06
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259
SGGE++R++ ++HKP +FLDE TS LD S + + +K++ G V+ H+PS
Sbjct: 93 SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS 149
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 34/173 (19%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
L +S RG+ +A++G SG GKST L L I + G + G+ +
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKST-LARLLTMIETPT-GGELYYQGQDLL-KADPEAQ 87
Query: 135 SYVMQDDQLFPMLTVFET------------FMFAAEVRLPPSISRDEKKKRVYELLDQLG 182
+ Q Q+ VF+ + + + S+S E++++ ++ ++G
Sbjct: 88 KLLRQKIQI-----VFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVG 142
Query: 183 LRSA-----THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLD 230
LR H + SGG+R+R++I ++ P ++ DEP S LD
Sbjct: 143 LRPEHYDRYPHMF---------SGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 3e-06
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259
SGGE+ R+++ ++ P+LL LDEPT+ LD S ++ E +K+ T V++ H
Sbjct: 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGT---VILVSHD-R 127
Query: 260 YRIQMLLDRIIVLARGR 276
Y + + +II L G+
Sbjct: 128 YFLDQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 3e-06
Identities = 47/203 (23%), Positives = 94/203 (46%), Gaps = 28/203 (13%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG---KPVTTSYM 130
+L D+S G+ + ++G +G+GKST L AL R+ S EG ++IDG VT
Sbjct: 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL-RLL--STEGEIQIDGVSWNSVTLQTW 1290
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY 190
+ + Q + F+F+ R + ++++ +++GL+S +
Sbjct: 1291 RKAFGVIPQ-----------KVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQF 1339
Query: 191 IGN------EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI 244
+G +S G ++ + + I+ K +L LDEP++ LD + ++ K
Sbjct: 1340 PDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT-LQIIRKTLKQ 1398
Query: 245 ARTGSIVLMTIHQPSYRIQMLLD 267
+ + V+++ H R++ LL+
Sbjct: 1399 SFSNCTVILSEH----RVEALLE 1417
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 49/206 (23%), Positives = 91/206 (44%), Gaps = 37/206 (17%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLF 144
G+++ ++GP+G GKST L LAG++ + +L + D P + +Q+
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKL-KPNLG---KFDDPPDWDEILDEFRGSELQN---- 77
Query: 145 PMLTVFETFMFAAEVR----------LPPS--------ISRDEKKKRVYELLDQLGLRSA 186
+ T + +V+ +P + + + +++ ++ EL+DQL LR
Sbjct: 78 -----YFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHV 132
Query: 187 THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246
I +SGGE +RV+I + F DEP+S LD + ++++A
Sbjct: 133 LDRNIDQ-----LSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE 187
Query: 247 TGSIVLMTIHQPSYRIQMLLDRIIVL 272
+ VL+ H + + L D I L
Sbjct: 188 DDNYVLVVEHDLAV-LDYLSDYIHCL 212
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 4e-06
Identities = 46/202 (22%), Positives = 80/202 (39%), Gaps = 58/202 (28%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAGRIA----------------------------QGSLE 115
G+++ I+GP+G GKST L LAG + + E
Sbjct: 99 PGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYE 158
Query: 116 GSVRIDGKPVTTSYM-KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRV 174
G +R KP + K+V V + +L DE+ +
Sbjct: 159 GELRAVHKPQYVDLIPKVVKGKVGE------LLK-----------------KVDERG-KF 194
Query: 175 YELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSA 234
E++++LGL + + +SGGE +RV+I ++ + F DEP+S LD
Sbjct: 195 DEVVERLGLENVLDRDVSE-----LSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQR 249
Query: 235 YSVVEKVKDIARTGSIVLMTIH 256
+ ++++A G V++ H
Sbjct: 250 LNAARVIRELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 6e-06
Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 19/187 (10%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT---TSYM 130
LL IS G ++ + G +GAGK+T L +AG + G + + + + +Y
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEK--GEILFERQSIKKDLCTYQ 73
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY 190
K + +V + P LT+ E ++ I + EL L
Sbjct: 74 KQLC-FVGHRSGINPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYP 124
Query: 191 IGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI 250
G +S G++R+V++ + K L LDEP LD S +++ K+++ G
Sbjct: 125 CGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 251 VLMTIHQ 257
VL+T HQ
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 15/139 (10%)
Query: 170 KKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGL 229
+K+R ELL ++G++ H I ++ GE ++V I I + ++P LL DEPT+ +
Sbjct: 132 RKRRAIELLHRVGIKD--HKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSM 189
Query: 230 DSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQML---LDRIIVLARGRLVYMGSP-- 283
+ T+ + + + + + + +L+ H +QM+ D+I VL G+ V
Sbjct: 190 EPTTQAQIFRLLSRLNQNSNTTILLISHD----LQMISQWADKINVLYCGQTVESAPSEE 245
Query: 284 -VALPAH--LAGFGRTVPD 299
V +P H R +PD
Sbjct: 246 LVTMPHHPYTQALIRAIPD 264
|
Length = 330 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 57/220 (25%), Positives = 92/220 (41%), Gaps = 38/220 (17%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSV-------RIDGKPVTT 127
L +I+ + G++ I+G G GKS+ L A+ G + +LEG V T
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEATR 74
Query: 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-- 185
S + +Y Q L TV E F + K+R + D L+
Sbjct: 75 SRNRYSVAYAAQKPWLLNA-TVEENITFGSPF----------NKQRYKAVTDACSLQPDI 123
Query: 186 -----ATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGL-----DSTSAY 235
T IG G +SGG+R+R+ + + +++FLD+P S L D
Sbjct: 124 DLLPFGDQTEIGERGI-NLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQE 182
Query: 236 SVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275
+++ ++D RT +VL+T H+ Y D II + G
Sbjct: 183 GILKFLQDDKRT--LVLVT-HKLQYLPHA--DWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 14/176 (7%)
Query: 63 KDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-----SLEGS 117
+GV + +LH++S Q GE I+GP+GAGKST L + G QG +L G
Sbjct: 264 NNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGR 323
Query: 118 VRIDGKPV--TTSYMKMVSSYVMQDDQL-FPMLTVFETFMFAAEVRLPPSISRDEKKKRV 174
R G+ + ++ VSS + D ++ + V + F + + + ++S D ++K
Sbjct: 324 RRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDS-IGIYQAVS-DRQQKLA 381
Query: 175 YELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLD 230
+ LD LG+ T + +S G++R I ++ P+LL LDEP GLD
Sbjct: 382 QQWLDILGIDKRT----ADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433
|
Length = 490 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-05
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 48/174 (27%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMV 133
L +++ GE +AI+G +G GK+T L L G + S G+V+ Y
Sbjct: 334 LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDS--GTVKWSEN-ANIGYYAQD 390
Query: 134 SSYVMQDDQLFPMLTVFETFM--FAAE------VRLPPSI------SRDEKKKRVYELLD 179
+Y ++D LT+F+ +M + E VR S+D+ KK V
Sbjct: 391 HAYDFEND-----LTLFD-WMSQWRQEGDDEQAVR---GTLGRLLFSQDDIKKSV----- 436
Query: 180 QLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTS 233
+ +SGGE+ R+ G ++ KP++L +DEPT+ +D S
Sbjct: 437 -----------------KVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMES 473
|
Length = 530 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 24/182 (13%)
Query: 170 KKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGL 229
+K+R ELL ++G++ H ++ GE ++V I I + ++P LL DEPT+ +
Sbjct: 132 RKRRAIELLHRVGIKD--HKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAM 189
Query: 230 DSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQML---LDRIIVLARGRLVYMGSP--- 283
+ T+ + + + R TI S+ +QML D+I VL G+ V
Sbjct: 190 EPTTQAQI---FRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKEL 246
Query: 284 VALPAH---------LAGFGRTVPDGENSLEYLLDVIKEYDESTVG--LGPLVLY-QRDG 331
V P H + FG +P ++ L L I + +G LGP Y QR+
Sbjct: 247 VTTPHHPYTQALIRAIPDFGSAMPH-KSRLNTLPGAIPLLEHLPIGCRLGPRCPYAQREC 305
Query: 332 IK 333
I+
Sbjct: 306 IE 307
|
Length = 330 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 33/218 (15%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG-----KPVTTSYMKMVSSYVMQ 139
G+ + I G +G+GKS+ +LA +G + IDG P+ T ++ S ++Q
Sbjct: 47 GQKVGICGRTGSGKSSL--SLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRL--SIILQ 102
Query: 140 DDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG------N 193
D P+L F+ +R R++E L+ L++ + G
Sbjct: 103 D----PIL-------FSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVT 151
Query: 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLM 253
EG S G+R+ + + K S+L +DE T+ +D + ++++KV A V+
Sbjct: 152 EGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATE-NILQKVVMTAFADRTVVT 210
Query: 254 TIHQPSYRIQMLL--DRIIVLARGRLVYMGSPVALPAH 289
H R+ +L D ++VL+RG LV +P L A
Sbjct: 211 IAH----RVSTILDADLVLVLSRGILVECDTPENLLAQ 244
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 24/112 (21%)
Query: 168 DEKKKRVYELLDQLGLRSATHTYIGNEGR--RGVSGGERRRVSIGID------IIHKPSL 219
K ++ Y G E R + +SGGER S+ + + + L
Sbjct: 792 IRKDGNGGLVVV---------VYDGGEVRPIKTLSGGERFLASLALRLALSDLLQGRARL 842
Query: 220 --LFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRI 269
LFLDEP LD + E ++++ G +++ H ++ L +R
Sbjct: 843 ELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISH-----VEELKERA 889
|
Length = 908 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 4e-05
Identities = 64/250 (25%), Positives = 114/250 (45%), Gaps = 39/250 (15%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+EF+N Y + ++ D +L I+ GE + I+G +GAGKS+ L
Sbjct: 1285 VEFRN--YCLRYREDLD--------LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLF- 1333
Query: 108 RIAQGSLEGSVRIDGKPVTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRL--- 161
RI + S EG + IDG + ++ + + QD P+L F+ +R+
Sbjct: 1334 RINE-SAEGEIIIDGLNIAKIGLHDLRFKITIIPQD----PVL-------FSGSLRMNLD 1381
Query: 162 PPSISRDEKKKRVYELLDQLGLRSATHTYIGN---EGRRGVSGGERRRVSIGIDIIHKPS 218
P S DE+ EL SA + + EG +S G+R+ V + ++ K
Sbjct: 1382 PFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTK 1441
Query: 219 LLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLD--RIIVLARGR 276
+L LDE T+ +D + + ++ ++ +TI ++R+ ++D R+IVL +G
Sbjct: 1442 ILVLDEATAAVDLETDNLIQSTIRTQFEDCTV--LTI---AHRLNTIMDYTRVIVLDKGE 1496
Query: 277 LVYMGSPVAL 286
+ G+P L
Sbjct: 1497 VAEFGAPSNL 1506
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 4e-05
Identities = 56/242 (23%), Positives = 98/242 (40%), Gaps = 41/242 (16%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+E K++ + + +G + L I + +G+I+ I+G +G GKST G
Sbjct: 338 IELKDVHMNPKAPEGSEG-------FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG 390
Query: 108 -RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPS 164
I Q EG + +DG V+ +DD LF +F F ++
Sbjct: 391 LYIPQ---EGEILLDGAAVSAD---------SRDDYRDLFS--AIFADFHLFDDL----- 431
Query: 165 ISRDEKK----KRVYELLDQLGLRSATHTYIGN-EGRRGVSGGERRRVSIGIDIIHKPSL 219
I DE + + L +L + G +S G+++R+++ + +
Sbjct: 432 IGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPI 491
Query: 220 LFLDEPTSGLDSTSAYSVV---EKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276
L DE + D A+ E + D+ R G +++ H Y L D+II LA G
Sbjct: 492 LLFDEWAA--DQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYF--ELADQIIKLAAGC 547
Query: 277 LV 278
+V
Sbjct: 548 IV 549
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 6e-05
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 11/106 (10%)
Query: 173 RVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST 232
R+ E+L QLGL + +SGG R+ ++G ++ P +L LDEPT+ LD
Sbjct: 138 RINEVLAQLGLDPDAAL---SS----LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIE 190
Query: 233 SAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
+ + +K GSI+ ++ H S+ I+ + RI+ L RG+LV
Sbjct: 191 TIEWLEGFLKTFQ--GSIIFIS-HDRSF-IRNMATRIVDLDRGKLV 232
|
Length = 635 |
| >gnl|CDD|222165 pfam13481, AAA_25, AAA domain | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-05
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 78 ISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-SLEGSVRIDGKPV 125
+ G RG + + G G GKST LA +A G G ++ V
Sbjct: 26 VKGLLPRGGLTLLAGAPGTGKSTLALDLAAAVATGRPFLGPFPVEPGRV 74
|
This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 6e-05
Identities = 49/163 (30%), Positives = 72/163 (44%), Gaps = 33/163 (20%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMV 133
+L I + G + ++G +GAGKST + LAG +A + G + + K + Y
Sbjct: 327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGL-AKGIKLGYFA-- 381
Query: 134 SSYVMQDDQLFPMLTVFETFMFAAE------VRLPPSISRDEKKKRVYELLDQLGLRSAT 187
QL F+ A E RL P E+K R Y L G +
Sbjct: 382 ------QHQL--------EFLRADESPLQHLARLAPQEL--EQKLRDY--LGGFGFQGDK 423
Query: 188 HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLD 230
T E R SGGE+ R+ + + + +P+LL LDEPT+ LD
Sbjct: 424 VT----EETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
|
Length = 638 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 7e-05
Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 38/231 (16%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
L +++ G+++ I GP+G+GKST L +L R S EG +R P+T
Sbjct: 331 LENVNFTLKPGQMLGICGPTGSGKSTLL-SLIQRHFDVS-EGDIRFHDIPLTK------- 381
Query: 135 SYVMQDDQLFPMLTVFET--FMF----AAEVRL------PPSISRDEKKKRVYELLDQLG 182
+Q D L V F+F A + L I + V++ D L
Sbjct: 382 ---LQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHD--DILR 436
Query: 183 LRSATHTYIGNEGRRGV--SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240
L T +G RGV SGG+++R+SI ++ +L LD+ S +D + + ++
Sbjct: 437 LPQGYDTEVG---ERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHN 493
Query: 241 VKDIARTGSIVLMTIHQPSYRIQMLL--DRIIVLARGRLVYMGSPVALPAH 289
++ G V+++ H R+ L I+V+ G + G+ L
Sbjct: 494 LRQW-GEGRTVIISAH----RLSALTEASEILVMQHGHIAQRGNHDQLAQQ 539
|
Length = 569 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 7e-05
Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 29/202 (14%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS----YMKMVSSYVMQ 139
RGE++ ++G +G+GKST L G S G + +DGKPV+ Y K+ S+ V
Sbjct: 348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQS--GEILLDGKPVSAEQLEDYRKLFSA-VFS 404
Query: 140 DDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199
D LF L E A+ + + + L +L L T G +
Sbjct: 405 DYHLFDQLLGPEG--KASP-------------QLIEKWLQRLELAHKTSLNDGRFSNLKL 449
Query: 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVV---EKVKDIARTGSIVLMTIH 256
S G+++R+++ + ++ + +L LDE + D A+ + + G + H
Sbjct: 450 STGQKKRLALLLALLEERDILVLDEWAA--DQDPAFRREFYQVLLPLLKEQGKTIFAISH 507
Query: 257 QPSYRIQMLLDRIIVLARGRLV 278
Y I DR++ + G+L
Sbjct: 508 DDHYFIHA--DRLLEMRNGQLS 527
|
Length = 546 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 7e-05
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTS 233
SGGERRRV++ ++ KP +L LDEPT+ LD+ S
Sbjct: 165 SGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 8e-05
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 189 TYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI 244
T +G+ + +SGG+++R+SI II P +L LDE TS LD+ S Y V + + ++
Sbjct: 571 TLVGSNASK-LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNL 625
|
Length = 1466 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 8e-05
Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 54/165 (32%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQL 143
G I+ I+GP+GAGKST + G+ S G+++I G+ V K+ +YV DQ
Sbjct: 349 PGGIVGIIGPNGAGKSTLFKMITGQEQPDS--GTIKI-GETV-----KL--AYV---DQ- 394
Query: 144 FPMLTVFETFMFAAEVRLPPSISRD--EKKKRVYEL----LD--QLGLRS-ATHTYIGNE 194
SRD + K V+E LD ++G R + Y+G
Sbjct: 395 ----------------------SRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRF 432
Query: 195 GRRG---------VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLD 230
+G +SGGER R+ + + ++L LDEPT+ LD
Sbjct: 433 NFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
|
Length = 556 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIH 256
R +SGG +++V I + P LL +DEPT G+D ++ + + ++ IA VL I
Sbjct: 402 RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLF-IS 460
Query: 257 QPSYRIQMLLDRIIVLARGRL 277
I+ + DR++V+ +G +
Sbjct: 461 SDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 1e-04
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 29/173 (16%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI--AQGSLEGSVRIDGKPVTTSYMK 131
+L +IS + +G+++A+ G +G+GKS+ L + G + ++G ++ S RI P T
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQT----- 495
Query: 132 MVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKR----VYELLDQLGLRSAT 187
S++M T+ + +F +S DE + +L + + L
Sbjct: 496 ---SWIMPG-------TIKDNIIFG--------LSYDEYRYTSVIKACQLEEDIALFPEK 537
Query: 188 HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240
+ EG +SGG+R R+S+ + L LD P + LD + + E
Sbjct: 538 DKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFES 590
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 49 EFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108
E +N++Y I KQ L+ D S Q RG+ +A++GP+G GK+T L + G+
Sbjct: 321 EMENVNYQIDGKQ------------LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ 368
Query: 109 IAQGSLEGSVRIDGK 123
+ S G + K
Sbjct: 369 LQADS--GRIHCGTK 381
|
Length = 635 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 198 GVSGGERRRVSIGIDIIH---KP-SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLM 253
+SGGE+ ++ + + KP L LDE GLD ++ E + + G+ V++
Sbjct: 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIV 136
Query: 254 TIHQP 258
H P
Sbjct: 137 ITHLP 141
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 29/156 (18%), Positives = 53/156 (33%), Gaps = 11/156 (7%)
Query: 580 FYIFAVCLVFFSSNDAVPTFIQE---RFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQG 636
+ L+ + + ++E R S Y++ +L L IQ
Sbjct: 98 LGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGV--SPLKYLLGKILGDLLVGLIQL 155
Query: 637 LTFAAITKLLLKLHSSLLNFWMILFASLITTNAYV---MLVSALVPSYIAGYAVVIATTA 693
L + L L N ++L L+ AY+ L+ +L + A V+
Sbjct: 156 LIILLL---LFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAILVISILIL 212
Query: 694 LFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALL 729
L G ++P + +W+ I P + LL
Sbjct: 213 LLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLL 248
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 35/217 (16%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI--AQGSLEGSVRIDGKPVTTSYMK 131
+L +I+ + +GE++AI G +G+GK++ L + G + ++G ++ S RI
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQF----- 106
Query: 132 MVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKK-KRVYELL----DQLGLRSA 186
S++M T+ E +F +S DE + K V + D
Sbjct: 107 ---SWIMPG-------TIKENIIFG--------VSYDEYRYKSVVKACQLEEDITKFPEK 148
Query: 187 THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK-VKDIA 245
+T +G EG +SGG+R R+S+ + L LD P LD + + E V +
Sbjct: 149 DNTVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM 207
Query: 246 RTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
+ +L+T + D+I++L G + G+
Sbjct: 208 ANKTRILVTSKMEHLKKA---DKILILHEGSSYFYGT 241
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 8/126 (6%)
Query: 149 VFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATH-TYIG-NEGRRGVSGGERRR 206
V E + + RL + + + K ++ +DQL Y+ + +SGGE +R
Sbjct: 38 VNEGLYASGKARLISFLPKFSRNKLIF--IDQLQFLIDVGLGYLTLGQKLSTLSGGELQR 95
Query: 207 VSIG--IDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQM 264
V + + +L LDEP++GL ++E +K + G+ V++ H +
Sbjct: 96 VKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL--DVLS 153
Query: 265 LLDRII 270
D II
Sbjct: 154 SADWII 159
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-04
Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 45/195 (23%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQ--GSLEGSVRID-------GKPVTTSYMKMVS 134
G++ I+GP+G GK+T + L+G + G E D G + Y K +
Sbjct: 98 EGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQN-YFKKLY 156
Query: 135 S----------YVMQDDQLFPML---TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQL 181
+ YV D + P + V E DE+ K + E++++L
Sbjct: 157 NGEIKVVHKPQYV---DLI-PKVFKGKVRELLKKV-----------DERGK-LDEVVERL 200
Query: 182 GLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKV 241
GL + I +SGGE +RV+I ++ F DEPTS LD +V +
Sbjct: 201 GLENILDRDISE-----LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLI 255
Query: 242 KDIARTGSIVLMTIH 256
+++A G VL+ H
Sbjct: 256 RELAE-GKYVLVVEH 269
|
Length = 590 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 5e-04
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG 122
GE++ I+GP G+GK+T ALA + G + IDG
Sbjct: 1 PGEVILIVGPPGSGKTTLARALAREL-GPPGGGVIYIDG 38
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 7e-04
Identities = 57/209 (27%), Positives = 85/209 (40%), Gaps = 32/209 (15%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQ--GSLEGSVRIDGKPVTTSY---MKMVSSYVMQ 139
G+ A +G +G+GKS ALAG + G + S+ K+VS +
Sbjct: 29 GDSWAFVGANGSGKSALARALAGELPLLSGERQSQFS---HITRLSFEQLQKLVSDEWQR 85
Query: 140 DDQLFPMLTVFE--TFMFAAEVRLPPSISRDEKKK--RVYELLDQLG---LRSATHTYIG 192
++ ML+ E T AE I +DE K R +L Q G L Y+
Sbjct: 86 NNT--DMLSPGEDDTGRTTAE------IIQDEVKDPARCEQLAQQFGITALLDRRFKYL- 136
Query: 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVL 252
S GE R+ + ++ +P LL LDEP GLD S + E + + ++G I L
Sbjct: 137 -------STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSG-ITL 188
Query: 253 MTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
+ + I + VLA L G
Sbjct: 189 VLVLNRFDEIPDFVQFAGVLADCTLAETG 217
|
Length = 490 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 7e-04
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ 111
+ ++G+ ++G SG GKST L+AL +
Sbjct: 81 ELLKGKTSVLVGQSGVGKSTLLNALLPELVL 111
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 62/230 (26%), Positives = 102/230 (44%), Gaps = 41/230 (17%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE-GSVRIDGKPVTT---SY 129
+LH +S + E + I+G +GAGKS+ L+AL RI + LE G + IDG ++
Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALF-RIVE--LERGRILIDGCDISKFGLMD 1310
Query: 130 MKMVSSYVMQDDQLFPMLTVF--ETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
++ V + Q LF F + F + L S+ R K + + LGL +
Sbjct: 1311 LRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRR--NSLGLDAEV 1368
Query: 188 HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART 247
+E S G+R+ +S+ ++ + +L LDE T+ +D RT
Sbjct: 1369 -----SEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVD--------------VRT 1409
Query: 248 GSIVLMTIHQPSYRIQMLL-----------DRIIVLARGRLVYMGSPVAL 286
+++ TI + ML+ DRI+VL GR+V +P L
Sbjct: 1410 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENL 1459
|
Length = 1622 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 8e-04
Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 11/201 (5%)
Query: 538 VIRTPELFLSREIVFAVMALILSSLFKNLSH--HDFKTINRLLNFYIFAVCLV---FFSS 592
++ L ++ + + L+ H L F + V L+ F
Sbjct: 45 LVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGI 104
Query: 593 NDAVPTFIQERFIFIRETSHNAY-RASSYVVSSLLVYLPFFGIQGLTFAAITKLLLK--- 648
+ER E + ++ ++ YL + + LL
Sbjct: 105 FSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPF 164
Query: 649 LHSSLLNF-WMILFASLITTNAYVMLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGH 707
L S LL ++L ++ A A + L FL G F
Sbjct: 165 LGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFL-SGVFFPLEL 223
Query: 708 IPPYWRWLHYISAIKYPFEAL 728
+P + + + YI+ + Y +AL
Sbjct: 224 LPAWLQGISYINPLTYAIDAL 244
|
Length = 286 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.001
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 83 IRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRID---GKPVTTS 128
++G+ + G SG GKST L+AL + G + G+ TT
Sbjct: 33 LKGKTSVLAGQSGVGKSTLLNALLPELDL--RTGEISEKLGRGRHTTTH 79
|
Length = 161 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 21/145 (14%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS----YMKMVSSYVMQ 139
RGE++ ++G +G+GKST L G S G + +DGKPVT Y K+ S+ V
Sbjct: 348 RGELLFLIGGNGSGKSTLAMLLTGLYQPQS--GEILLDGKPVTAEQPEDYRKLFSA-VFT 404
Query: 140 DDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199
D LF L E V + L++L + G +
Sbjct: 405 DFHLFDQLLGPEGK--------------PANPALVEKWLERLKMAHKLELEDGRISNLKL 450
Query: 200 SGGERRRVSIGIDIIHKPSLLFLDE 224
S G+++R+++ + + + +L LDE
Sbjct: 451 SKGQKKRLALLLALAEERDILLLDE 475
|
Length = 547 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.002
Identities = 18/74 (24%), Positives = 34/74 (45%)
Query: 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQP 258
+SGGE +RV+I ++ + DEP++ LD + ++ ++ G + +
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131
Query: 259 SYRIQMLLDRIIVL 272
+ L DRI V
Sbjct: 132 LAVLDYLSDRIHVF 145
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
LL D+S + G+ + I GPSG GKS+ ALAG
Sbjct: 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG 49
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.004
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 83 IRGEIMAIMGPSGAGKSTFLDALA 106
I + + GPSG+GKST +DA+
Sbjct: 19 IDPKGTLLTGPSGSGKSTLIDAIQ 42
|
Length = 60 |
| >gnl|CDD|240530 cd13125, MATE_like_10, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.004
Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 23/168 (13%)
Query: 550 IVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFFSSNDAVPTFIQ-----ERF 604
I+ + L+L K LS F I+ F + + L F+ N+ + + +R+
Sbjct: 85 ILSILGGLLLLLFSKPLSSLLFGDIDYSWVFILLGLALPLFALNNLLLAILNGLKEIKRY 144
Query: 605 IFIRETSHNAYRAS-SYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSSLLNFWMILFAS 663
I N + +VS LLVY F+G++G A + L+ SL+ ++++
Sbjct: 145 ALI-----NIISSLIGLLVSVLLVY--FYGLKGALLALV------LNQSLIFLVTLIYSR 191
Query: 664 LITTNAYVMLVSALVPSYI---AGYAVVIATTALFFLTCGFFLKRGHI 708
L L I ++++ +AL + R +
Sbjct: 192 KQPWFKLKYLWGRLDKDIIKKLLKFSLMALVSALSLPLSQIIV-RNIL 238
|
This family might function as a translocase for lipopolysaccharides, such as O-antigen. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 409 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 820 | |||
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.98 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.98 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.98 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.97 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.97 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.97 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.97 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.97 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.97 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.96 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.96 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.96 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.95 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.95 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.95 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.93 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.93 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.93 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.93 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.93 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.92 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.92 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.92 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.92 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.91 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.91 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.91 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.9 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.9 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.89 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.88 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.87 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.85 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.85 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.85 | |
| PF01061 | 210 | ABC2_membrane: ABC-2 type transporter; InterPro: I | 99.85 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.84 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.82 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.82 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.81 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.81 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.8 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.79 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.79 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.78 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.77 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.77 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.76 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.74 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.73 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.71 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.7 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.7 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.7 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.68 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.64 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.58 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.56 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.54 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.48 | |
| TIGR01247 | 236 | drrB daunorubicin resistance ABC transporter membr | 99.45 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.44 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.38 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.37 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.37 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.35 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.35 | |
| TIGR03062 | 208 | pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa | 99.32 | |
| TIGR00025 | 232 | Mtu_efflux ABC transporter efflux protein, DrrB fa | 99.32 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.28 | |
| TIGR01291 | 253 | nodJ ABC-2 type transporter, NodJ family. Nearly a | 99.26 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.25 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.22 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.21 | |
| TIGR03861 | 253 | phenyl_ABC_PedC alcohol ABC transporter, permease | 99.21 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.19 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.18 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.17 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.16 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.15 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.14 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.14 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.14 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.1 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.08 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.07 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.01 | |
| PRK15066 | 257 | inner membrane transport permease; Provisional | 99.0 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 98.98 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.98 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 98.97 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.94 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.89 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.87 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.86 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.8 | |
| COG0842 | 286 | ABC-type multidrug transport system, permease comp | 98.79 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.77 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.76 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.75 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.72 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.71 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.66 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.65 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.64 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.64 | |
| TIGR01248 | 152 | drrC daunorubicin resistance protein C. The model | 98.48 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.45 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.42 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.41 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.41 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.39 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.38 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.38 | |
| PF06422 | 103 | PDR_CDR: CDR ABC transporter; InterPro: IPR010929 | 98.37 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.36 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.36 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.34 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.32 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.29 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.28 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.21 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.17 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.14 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.13 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.1 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.01 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.0 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.93 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 97.93 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 97.93 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.91 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 97.91 | |
| TIGR03518 | 240 | ABC_perm_GldF gliding motility-associated ABC tran | 97.88 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.87 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 97.82 | |
| COG1682 | 263 | TagG ABC-type polysaccharide/polyol phosphate expo | 97.81 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.81 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.8 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 97.78 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 97.78 |
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-102 Score=914.73 Aligned_cols=585 Identities=39% Similarity=0.645 Sum_probs=504.6
Q ss_pred CCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceEEEECC
Q 003437 44 PGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-SLEGSVRIDG 122 (820)
Q Consensus 44 ~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-~~~G~I~i~G 122 (820)
.+..+.|+|++++.+++.. ..+.+|+|||++++|||++||||||||||||||++|+|+...+ ..+|+|++||
T Consensus 22 ~~~~~~~~~~~~~~~~~~~-------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG 94 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK-------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG 94 (613)
T ss_pred ccceeEEEEEEEEecCCCC-------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC
Confidence 4556999999999765421 3467999999999999999999999999999999999998653 6899999999
Q ss_pred EeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 123 KPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 123 ~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
++.....+++.+|||.|||.++|++||+|+|.|.+.+|+|...++++++++|+++++++||.+++|+++|+...|++|||
T Consensus 95 ~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGG 174 (613)
T KOG0061|consen 95 RPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGG 174 (613)
T ss_pred ccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccc
Confidence 88877778899999999999999999999999999999998889999999999999999999999999999888999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+||.+|+++|+||||||||||||+.++.++++.|+++|++|+|||+++|||+.+++++||++++|++|+++|+|+
T Consensus 175 ErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~ 254 (613)
T KOG0061|consen 175 ERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGS 254 (613)
T ss_pred hhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhccCCCCCCCCChHHHHHHHhhhccccccCCCCceecccCCCCCccccCCCCCCCCCCCCccccchhhcccc
Q 003437 283 PVALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPRTPASRSKHAISLRSQ 362 (820)
Q Consensus 283 ~~~~~~~f~~~g~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (820)
++++.+||++.|++||+..||+||++|+++..+.. ....+
T Consensus 255 ~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~----~~~~~------------------------------------ 294 (613)
T KOG0061|consen 255 PRELLEFFSSLGFPCPELENPADFLLDLLSVDSGT----RELEE------------------------------------ 294 (613)
T ss_pred HHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCc----hhHHh------------------------------------
Confidence 99999999999999999999999999998642000 00000
Q ss_pred cccccCCCCCCCCCCCccccCCCCCCchHHHHHHHhhhhccccccccccccchhhhhhhhhcccchhccccccCCCCCCC
Q 003437 363 AFSFSTGNMTPGANSTQFDYYDDDDDDDEEFDKSLERKTAATPIINMQSGAYNNRLASQFYKDFSVWLYHGVVGTPRRRP 442 (820)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (820)
..+.+.... ....... ..+... .
T Consensus 295 --------------------------~~~~~~~~~--~~~~~~~-------~~~~~~-----~----------------- 317 (613)
T KOG0061|consen 295 --------------------------AVRIAKLIN--KFSQTDN-------LKKTLE-----A----------------- 317 (613)
T ss_pred --------------------------HHHHHHHhh--hccccch-------hhhhHH-----H-----------------
Confidence 000000000 0000000 000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCccccCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCc
Q 003437 443 SWTPARTPGRTPAKTPISGARSFVSGEYYSTPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDMEEKVLDEPDHGPKFANP 522 (820)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 522 (820)
. .. ...+ ..........+
T Consensus 318 ---~-----~~----~~~~--------------------------------------------------~~~~~~~~~~s 335 (613)
T KOG0061|consen 318 ---L-----EK----SLST--------------------------------------------------SKKVEIGTSPS 335 (613)
T ss_pred ---H-----hh----hccc--------------------------------------------------ccccccccCCc
Confidence 0 00 0000 00000011579
Q ss_pred HHHHHHHHHHhhHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH-hhhhcHHHHHH
Q 003437 523 WLREVAVLSWRTALNVIRTPELFLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFF-SSNDAVPTFIQ 601 (820)
Q Consensus 523 ~~~Q~~~L~~R~~~~~~Rdp~~~~~r~~~~i~~~lliG~lf~~l~~~~~~~~~~~~g~~ff~~~~~~~-~~~~~i~~f~~ 601 (820)
||.|+++|++|.+++.+|||.++..|+++.+++|+++|++||+++. +..+++++.|++||.+.+..+ ..++.++.|++
T Consensus 336 ~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~-~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~ 414 (613)
T KOG0061|consen 336 WWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN-DAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQ 414 (613)
T ss_pred HHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Confidence 9999999999999999999999999999999999999999999865 566777999999998887755 55678999999
Q ss_pred HhhHHHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch---HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003437 602 ERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS---LLNFWMILFASLITTNAYVMLVSALV 678 (820)
Q Consensus 602 eR~vf~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~---f~~f~l~l~l~~~~~~s~~~~i~a~~ 678 (820)
||++|.||+.+|+|+.++||+|++++++|+.++.+++|.+|+|||+|++++ |++|++++++..++++++++++++++
T Consensus 415 e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~ 494 (613)
T KOG0061|consen 415 ERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIV 494 (613)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999875 57777888899999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHhhcCC--CccccCCCCCCCCCCCccccc
Q 003437 679 PSYIAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKG--KECYNGAPGDLSPGPLGEVKL 756 (820)
Q Consensus 679 ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~--~~c~~~~~~~~~p~p~~~~~~ 756 (820)
|+...|++++++++++|++|+||+++.++||.||+|++|+||++|+|||+++|||.+ ..|...
T Consensus 495 ~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~--------------- 559 (613)
T KOG0061|consen 495 PNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLS--------------- 559 (613)
T ss_pred cchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccC---------------
Confidence 999999999999999999999999999999999999999999999999999999996 245321
Q ss_pred cccccccccccCCCcccchHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 003437 757 SKLHNTTAALLRPDCTLIGEDIVYSMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYSKNVRK 820 (820)
Q Consensus 757 ~~~~~~~~~~~~~~c~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~l~L~~~~~~~r~ 820 (820)
....|..+|.++++.+++...++|.|+.++++++++||+++|++|+++.|++|+
T Consensus 560 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~~ 613 (613)
T KOG0061|consen 560 ----------GNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKRR 613 (613)
T ss_pred ----------cCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 113577899999999999999999999999999999999999999999998874
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-100 Score=903.00 Aligned_cols=575 Identities=31% Similarity=0.537 Sum_probs=484.4
Q ss_pred cccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceEEEECCEeCCCccccceEEEEccCCCCCCCCCH
Q 003437 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-SLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTV 149 (820)
Q Consensus 71 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV 149 (820)
++.+|+|+|+++++||+++|+|||||||||||++|+|+.+++ ..+|+|.+||.+++....++.+|||+|++.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999987543 2579999999998755567789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC-CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 003437 150 FETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG-RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSG 228 (820)
Q Consensus 150 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsg 228 (820)
+|||.|++.++.+...++++++++++++++.+||.+++|+.+|++. .++|||||||||+||++|+.+|++|||||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9999999998877667778888899999999999999999999753 678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhhhhhccCCCCCCCCChHHHHH
Q 003437 229 LDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDGENSLEYLL 308 (820)
Q Consensus 229 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~ad~~~ 308 (820)
||+.++..+++.|++++++|+|||+++|||+.++.++||++++|++|+++++|+++++.+||+++|++||+..||+||++
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~ 276 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYV 276 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence 99999999999999999889999999999987789999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccccCCCCceecccCCCCCccccCCCCCCCCCCCCccccchhhcccccccccCCCCCCCCCCCccccCCCCCC
Q 003437 309 DVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPRTPASRSKHAISLRSQAFSFSTGNMTPGANSTQFDYYDDDDD 388 (820)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (820)
++++....... . . .+
T Consensus 277 ~~~~~~~~~~~---------------~--~------------------------------------------------~~ 291 (617)
T TIGR00955 277 QVLAVIPGSEN---------------E--S------------------------------------------------RE 291 (617)
T ss_pred HHhhcCccccc---------------c--h------------------------------------------------HH
Confidence 98753211000 0 0 00
Q ss_pred chHHHHHHHhhhhccccccccccccchhhhhhhhhcccchhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 003437 389 DDEEFDKSLERKTAATPIINMQSGAYNNRLASQFYKDFSVWLYHGVVGTPRRRPSWTPARTPGRTPAKTPISGARSFVSG 468 (820)
Q Consensus 389 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (820)
..+++.+..+.+. ...+.. +....+. . ..+ ..
T Consensus 292 ~~~~~~~~~~~s~------------~~~~~~----~~~~~~~---------------~-~~~-------~~--------- 323 (617)
T TIGR00955 292 RIEKICDSFAVSD------------IGRDML----VNTNLWS---------------G-KAG-------GL--------- 323 (617)
T ss_pred HHHHHHHHHhcch------------hhHHHH----HHhhhhh---------------c-ccc-------cc---------
Confidence 0011111110000 000000 0000000 0 000 00
Q ss_pred ccCCCCCCCCCCCCCCccccCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCcHHHHHHHHHHhhHHHhhcChHHHHHH
Q 003437 469 EYYSTPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDMEEKVLDEPDHGPKFANPWLREVAVLSWRTALNVIRTPELFLSR 548 (820)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rdp~~~~~r 548 (820)
.. . . ......++..+|++|+++|++|.+++.+|||.++.+|
T Consensus 324 -----~~------------~-------~---------------~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~ 364 (617)
T TIGR00955 324 -----VK------------D-------S---------------ENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVR 364 (617)
T ss_pred -----cc------------c-------c---------------ccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 00 0 0 0000234678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHh-hhhcHHHHHHHhhHHHhHhcCCCCChhHHHHHHHHH
Q 003437 549 EIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFFS-SNDAVPTFIQERFIFIRETSHNAYRASSYVVSSLLV 627 (820)
Q Consensus 549 ~~~~i~~~lliG~lf~~l~~~~~~~~~~~~g~~ff~~~~~~~~-~~~~i~~f~~eR~vf~RE~~~g~Y~~~aY~la~~l~ 627 (820)
+++.+++|+++|++||+++. +.++++++.|++||++++..|. ++..++.|+.||++|+||+.+|+|++++|++|++++
T Consensus 365 ~~~~i~~~li~G~~f~~~~~-~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~ 443 (617)
T TIGR00955 365 LIQTMMTAILIGLIYLGQGL-TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIA 443 (617)
T ss_pred HHHHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHH
Confidence 99999999999999999875 5788999999988888766665 567889999999999999999999999999999999
Q ss_pred HhhHHHHHHhHHhhhhhhccCCCch---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhccceec
Q 003437 628 YLPFFGIQGLTFAAITKLLLKLHSS---LLNFWMILFASLITTNAYVMLVSALVPSYIAGYAVVIATTALFFLTCGFFLK 704 (820)
Q Consensus 628 elP~~~~~~~if~~i~Y~m~Gl~~~---f~~f~l~l~l~~~~~~s~~~~i~a~~ps~~~a~~v~~~~~~~~~lf~Gf~i~ 704 (820)
|+|+.++.+++|++|+|||+||+++ |+.|+++++++.+++.++++++++++|+..+|..+++++++++++|+||+++
T Consensus 444 ~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~ 523 (617)
T TIGR00955 444 ELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFIN 523 (617)
T ss_pred HHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccC
Confidence 9999999999999999999999975 5677788888889999999999999999999999999999999999999999
Q ss_pred CCCCCcceeehhccChhhHHHHHHHHhhcCCCccccCCCCCCCCCCCccccccccccccccccCCCcccchHHHHHHcCC
Q 003437 705 RGHIPPYWRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGPLGEVKLSKLHNTTAALLRPDCTLIGEDIVYSMDI 784 (820)
Q Consensus 705 ~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~~~c~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~c~~~G~~~L~~~g~ 784 (820)
.++||+||+|++|+||++|+|||++.|||.+.....|. +.+ ....|+.+|+++|+.||+
T Consensus 524 ~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~-------~~~--------------~~~~c~~~g~~~l~~~g~ 582 (617)
T TIGR00955 524 SDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECT-------SAN--------------TTGPCPSSGEVILETLSF 582 (617)
T ss_pred hhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCcccccc-------CcC--------------cCCCCCcChHHHHHhcCC
Confidence 99999999999999999999999999999886321110 000 123588899999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 003437 785 QIENIWFDILILLAWGVLYRLFFYLVLRFYSKNVR 819 (820)
Q Consensus 785 ~~~~~w~~~~il~~~~~~~~~l~~l~L~~~~~~~r 819 (820)
+.++.|.|+++|++++++|++++|++|+++.+++|
T Consensus 583 ~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 583 RNADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999887776
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-99 Score=893.20 Aligned_cols=603 Identities=27% Similarity=0.442 Sum_probs=476.6
Q ss_pred CCceEEEEEEEEEECcccccc----------------c-ccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q 003437 44 PGHGLEFKNLSYSIMKKQKKD----------------G-VWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA 106 (820)
Q Consensus 44 ~~~~L~~~nls~~~~~~~~~~----------------~-~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~ 106 (820)
++..+++.|++|+......+. . ....+++.+|+|||+++++||++||+||||||||||||+|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 456799999999875331000 0 00112467999999999999999999999999999999999
Q ss_pred cCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 003437 107 GRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA 186 (820)
Q Consensus 107 G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 186 (820)
|+.++...+|+|.+||+++... .++.+|||+|++.+++.+||+||+.|.+.++.+...+++++.++++++++.+||+++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9986544589999999987643 345689999999999999999999998877655445666777889999999999999
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhc
Q 003437 187 THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL 266 (820)
Q Consensus 187 ~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 266 (820)
+|+.+|+...++|||||||||+||++|+.+|+||||||||+|||+.++.++++.|++++++|+|||+++||++.++.++|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999998889999999999999999999999999999999999999999999999999889999999999986688999
Q ss_pred CEEEEEeCCeEEEEcCccchhhhhhccCCCCCCCCChHHHHHHHhhhccccccCCCCceecccCCCCCccccCCCCCCCC
Q 003437 267 DRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIP 346 (820)
Q Consensus 267 D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (820)
|++++|++|++++.|+++++.+||+++|++||.+.|||||++++++...... +.... . .+
T Consensus 275 D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~------------~~~~~--~------~~ 334 (659)
T PLN03211 275 DSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTD------------GVSER--E------KP 334 (659)
T ss_pred ceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCC------------Ccccc--c------cc
Confidence 9999999999999999999999999999999999999999999985321100 00000 0 00
Q ss_pred CCCCccccchhhcccccccccCCCCCCCCCCCccccCCCCCCchHHHHHHHhhhhccccccccccccchhhhhhhhhccc
Q 003437 347 RTPASRSKHAISLRSQAFSFSTGNMTPGANSTQFDYYDDDDDDDEEFDKSLERKTAATPIINMQSGAYNNRLASQFYKDF 426 (820)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (820)
. . .+...+.|.+..... ....+. ..
T Consensus 335 ~---------~----------------------------~~~l~~~~~~~~~~~-------------~~~~~~----~~- 359 (659)
T PLN03211 335 N---------V----------------------------KQSLVASYNTLLAPK-------------VKAAIE----MS- 359 (659)
T ss_pred h---------H----------------------------HHHHHHHHHhhccHH-------------HHHHHh----hh-
Confidence 0 0 000001111100000 000000 00
Q ss_pred chhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCccccCCCCCCCCchhhhhhhhh
Q 003437 427 SVWLYHGVVGTPRRRPSWTPARTPGRTPAKTPISGARSFVSGEYYSTPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDME 506 (820)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (820)
. ... .. .. .+. ... .+
T Consensus 360 --~---------------~~~-~~-~~----~~~------------~~~-----------------------------~~ 375 (659)
T PLN03211 360 --H---------------FPQ-AN-AR----FVG------------SAS-----------------------------TK 375 (659)
T ss_pred --h---------------hhc-ch-hh----hhh------------ccc-----------------------------cc
Confidence 0 000 00 00 000 000 00
Q ss_pred hhccCCCCCCCCCCCcHHHHHHHHHHhhHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Q 003437 507 EKVLDEPDHGPKFANPWLREVAVLSWRTALNVIRTPELFLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVC 586 (820)
Q Consensus 507 ~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rdp~~~~~r~~~~i~~~lliG~lf~~l~~~~~~~~~~~~g~~ff~~~ 586 (820)
. .......+.++||+|+.+|++|++++ +||+.++.+|+++++++|+++|++||+++ ..+++++.|++||+++
T Consensus 376 --~--~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~---~~~~~~r~g~lff~~~ 447 (659)
T PLN03211 376 --E--HRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD---FRDVQDRLGLLFFISI 447 (659)
T ss_pred --c--cccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHH
Confidence 0 00001235578999999999999999 89999999999999999999999999974 5689999999999877
Q ss_pred HHHH-hhhhcHHHHHHHhhHHHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch---HHHHHHHHHH
Q 003437 587 LVFF-SSNDAVPTFIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS---LLNFWMILFA 662 (820)
Q Consensus 587 ~~~~-~~~~~i~~f~~eR~vf~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~---f~~f~l~l~l 662 (820)
+.++ +++++++.|+.||+||+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||+++ |++|++++++
T Consensus 448 ~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l 527 (659)
T PLN03211 448 FWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLG 527 (659)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHH
Confidence 7554 67789999999999999999999999999999999999999999999999999999999964 7888899999
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHhhcCCCccccCC
Q 003437 663 SLITTNAYVMLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGKECYNGA 742 (820)
Q Consensus 663 ~~~~~~s~~~~i~a~~ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~~~c~~~~ 742 (820)
..++++++|+++++++|+..+|+++++++++++++|+||+++ +||+||+|++|+||++|+|||+++|||.+.++..
T Consensus 528 ~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~-- 603 (659)
T PLN03211 528 YVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRIS-- 603 (659)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccc--
Confidence 999999999999999999999999999999999999999997 7999999999999999999999999998653210
Q ss_pred CCCCCCCCCccccccccccccccccCCCcccchHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 003437 743 PGDLSPGPLGEVKLSKLHNTTAALLRPDCTLIGEDIVYSMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYSK 816 (820)
Q Consensus 743 ~~~~~p~p~~~~~~~~~~~~~~~~~~~~c~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~l~L~~~~~ 816 (820)
..+.|.... + .....|.+.++.+++ ..+.|.|+++|++++++||+++|++|++.++
T Consensus 604 -~~~~C~~~~----------~--~~~~~c~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~ 659 (659)
T PLN03211 604 -SLLGCSLPH----------G--SDRASCKFVEEDVAG-----QISPATSVSVLIFMFVGYRLLAYLALRRIKH 659 (659)
T ss_pred -cccCCCCcc----------c--CCCCCCccchhhhhc-----ccchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 001110000 0 012346655554443 4479999999999999999999999987653
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-97 Score=939.88 Aligned_cols=591 Identities=25% Similarity=0.420 Sum_probs=491.8
Q ss_pred CceEEEEEEEEEECcccccc-cccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE
Q 003437 45 GHGLEFKNLSYSIMKKQKKD-GVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK 123 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~-~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~ 123 (820)
+..++|+||+|+++.+.... .....+.+.+|+|||++++|||+++|+||||||||||||+|+|+..+++.+|+|.+||.
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~ 944 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGF 944 (1470)
T ss_pred cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCc
Confidence 44699999999986432100 00111235699999999999999999999999999999999999765567899999999
Q ss_pred eCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 124 PVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 124 ~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
+......++.+|||+|++.+++.+||+|||.|++.++.+...+++++.++++++++.+||.+++|+.+|+..+++|||||
T Consensus 945 ~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGe 1024 (1470)
T PLN03140 945 PKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQ 1024 (1470)
T ss_pred cCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHH
Confidence 87644456778999999999999999999999988876655666777788999999999999999999987778999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC-CeEEEEcC
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR-GRLVYMGS 282 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~-G~iv~~G~ 282 (820)
||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.+++++||++++|++ |+++++|+
T Consensus 1025 rkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~ 1104 (1470)
T PLN03140 1025 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGP 1104 (1470)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECC
Confidence 99999999999999999999999999999999999999999989999999999999768889999999996 89999999
Q ss_pred c----cchhhhhhcc-CC-CCCCCCChHHHHHHHhhhccccccCCCCceecccCCCCCccccCCCCCCCCCCCCccccch
Q 003437 283 P----VALPAHLAGF-GR-TVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPRTPASRSKHA 356 (820)
Q Consensus 283 ~----~~~~~~f~~~-g~-~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (820)
+ +++.+||+++ |. +||+..|||||++++++...+. .
T Consensus 1105 ~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~---------------~----------------------- 1146 (1470)
T PLN03140 1105 LGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV---------------K----------------------- 1146 (1470)
T ss_pred cccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc---------------c-----------------------
Confidence 6 6899999997 66 4999999999999987421000 0
Q ss_pred hhcccccccccCCCCCCCCCCCccccCCCCCCchHHHHHHHhhhhccccccccccccchhhhhhhhhcccchhccccccC
Q 003437 357 ISLRSQAFSFSTGNMTPGANSTQFDYYDDDDDDDEEFDKSLERKTAATPIINMQSGAYNNRLASQFYKDFSVWLYHGVVG 436 (820)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (820)
...+..+.|.++...+.. .+. ...
T Consensus 1147 ----------------------------~~~d~~~~~~~s~~~~~~-------------~~~-------~~~-------- 1170 (1470)
T PLN03140 1147 ----------------------------LGIDFAEHYKSSSLYQRN-------------KAL-------VKE-------- 1170 (1470)
T ss_pred ----------------------------ccchHHHHHhccHHHHHH-------------HHH-------HHH--------
Confidence 000112333333111000 000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCccccCCCCCCCCchhhhhhhhhhhccCCCCCC
Q 003437 437 TPRRRPSWTPARTPGRTPAKTPISGARSFVSGEYYSTPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDMEEKVLDEPDHG 516 (820)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (820)
+.. +.+. + . .....
T Consensus 1171 ----------------------~~~----------~~~~------------~-------~---------------~~~~~ 1184 (1470)
T PLN03140 1171 ----------------------LST----------PPPG------------A-------S---------------DLYFA 1184 (1470)
T ss_pred ----------------------hcc----------CCCC------------c-------c---------------ccccC
Confidence 000 0000 0 0 00002
Q ss_pred CCCCCcHHHHHHHHHHhhHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCC--CHHHHHHHHHHHHHHHHHHHHh-hh
Q 003437 517 PKFANPWLREVAVLSWRTALNVIRTPELFLSREIVFAVMALILSSLFKNLSHH--DFKTINRLLNFYIFAVCLVFFS-SN 593 (820)
Q Consensus 517 ~~~~~s~~~Q~~~L~~R~~~~~~Rdp~~~~~r~~~~i~~~lliG~lf~~l~~~--~~~~~~~~~g~~ff~~~~~~~~-~~ 593 (820)
.+|+.+||+|+++|++|+++++||||.++.+|+++++++|+++|++||+++++ ++++++++.|++|+++++..+. +.
T Consensus 1185 ~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~ 1264 (1470)
T PLN03140 1185 TQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCS 1264 (1470)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999999863 3578889999999888777664 45
Q ss_pred hcHHHHHHHhhHHHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch---HHHHHHHHHHHHHHHHHH
Q 003437 594 DAVPTFIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS---LLNFWMILFASLITTNAY 670 (820)
Q Consensus 594 ~~i~~f~~eR~vf~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~---f~~f~l~l~l~~~~~~s~ 670 (820)
+.+|.|..||+||+||+++|+|++++|++|++++|+|+.++.+++|++|+|||+||+.+ |++|+++++++.+++.++
T Consensus 1265 ~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~ 1344 (1470)
T PLN03140 1265 TVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYY 1344 (1470)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999854 778888888889999999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHhhcCCCccccCCCCCCCCCC
Q 003437 671 VMLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGP 750 (820)
Q Consensus 671 ~~~i~a~~ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~~~c~~~~~~~~~p~p 750 (820)
|+++++++|+.++|.++++++++++++|+||++|.++||+||+|++|+||++|+|+|++.|||++..+.+. .|
T Consensus 1345 g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~-------~~ 1417 (1470)
T PLN03140 1345 GMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIK-------VP 1417 (1470)
T ss_pred HHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCccc-------CC
Confidence 99999999999999999999999999999999999999999999999999999999999999998743210 01
Q ss_pred CccccccccccccccccCCCcccchHHH-HHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 003437 751 LGEVKLSKLHNTTAALLRPDCTLIGEDI-VYSMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYSKNVR 819 (820)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~c~~~G~~~-L~~~g~~~~~~w~~~~il~~~~~~~~~l~~l~L~~~~~~~r 819 (820)
.+ .+ ..+++++ +++|||+++++|++++|+++|+++|++++++++++.+.+||
T Consensus 1418 ~~---------------~~--~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1418 GG---------------AP--DPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred CC---------------CC--CCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 00 00 1245666 68899999999999999999999999999999999999987
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-97 Score=939.20 Aligned_cols=600 Identities=25% Similarity=0.438 Sum_probs=499.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceEEEECCEeC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-SLEGSVRIDGKPV 125 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-~~~G~I~i~G~~~ 125 (820)
.|+++||+++++.+. +++.+|+|||+++++||++||+||||||||||||+|+|+.+++ +++|+|.+||+++
T Consensus 759 ~l~~~nl~~~~~~~~--------~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~ 830 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKK--------EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPL 830 (1394)
T ss_pred eEEEEeeEEEecCCC--------CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEEC
Confidence 489999999985321 2356999999999999999999999999999999999998532 4679999999998
Q ss_pred CCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. ..++.+|||+|++.+++.+||+|||.|++.++.+...+++++.++++++++.+||.+++|+.+|+.. .+|||||||
T Consensus 831 ~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrq 908 (1394)
T TIGR00956 831 DS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRK 908 (1394)
T ss_pred Ch-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhh
Confidence 54 4567899999999999999999999999988866556677778899999999999999999998543 379999999
Q ss_pred HHHHHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC-eEEEEcCc
Q 003437 206 RVSIGIDIIHKPS-LLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG-RLVYMGSP 283 (820)
Q Consensus 206 Rv~ia~aL~~~P~-lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G-~iv~~G~~ 283 (820)
||+||++|+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++++|++
T Consensus 909 Rl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~ 988 (1394)
T TIGR00956 909 RLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDL 988 (1394)
T ss_pred HHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCc
Confidence 9999999999997 999999999999999999999999999889999999999997677889999999997 99999997
Q ss_pred ----cchhhhhhccCC-CCCCCCChHHHHHHHhhhccccccCCCCceecccCCCCCccccCCCCCCCCCCCCccccchhh
Q 003437 284 ----VALPAHLAGFGR-TVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPRTPASRSKHAIS 358 (820)
Q Consensus 284 ----~~~~~~f~~~g~-~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (820)
+++.+||+..|+ +||++.|||||++|+++...... .
T Consensus 989 ~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~-------------------~-------------------- 1029 (1394)
T TIGR00956 989 GENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH-------------------A-------------------- 1029 (1394)
T ss_pred ccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc-------------------h--------------------
Confidence 578999999996 99999999999999875311000 0
Q ss_pred cccccccccCCCCCCCCCCCccccCCCCCCchHHHHHHHhhhhccccccccccccchhhhhhhhhcccchhccccccCCC
Q 003437 359 LRSQAFSFSTGNMTPGANSTQFDYYDDDDDDDEEFDKSLERKTAATPIINMQSGAYNNRLASQFYKDFSVWLYHGVVGTP 438 (820)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (820)
..+..+.|..+.+.+.. .+.+. ...
T Consensus 1030 ---------------------------~~~~~~~~~~s~~~~~~------------~~~~~-~~~--------------- 1054 (1394)
T TIGR00956 1030 ---------------------------NQDYHEVWRNSSEYQAV------------KNELD-RLE--------------- 1054 (1394)
T ss_pred ---------------------------hccHHHHHhcCHHHHHH------------HHHHH-Hhh---------------
Confidence 00011222222110000 00000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCccccCCCCCCCCchhhhhhhhhhhccCCCCCCCC
Q 003437 439 RRRPSWTPARTPGRTPAKTPISGARSFVSGEYYSTPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDMEEKVLDEPDHGPK 518 (820)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (820)
. .... .+. . ..+...++
T Consensus 1055 ------~------------~~~~-----------~~~------------~----------------------~~~~~~~~ 1071 (1394)
T TIGR00956 1055 ------A------------ELSK-----------AED------------D----------------------NDPDALSK 1071 (1394)
T ss_pred ------c------------cccc-----------Ccc------------c----------------------cccccccc
Confidence 0 0000 000 0 00001235
Q ss_pred CCCcHHHHHHHHHHhhHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhcHHH
Q 003437 519 FANPWLREVAVLSWRTALNVIRTPELFLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFFSSNDAVPT 598 (820)
Q Consensus 519 ~~~s~~~Q~~~L~~R~~~~~~Rdp~~~~~r~~~~i~~~lliG~lf~~l~~~~~~~~~~~~g~~ff~~~~~~~~~~~~i~~ 598 (820)
|+++||+|+++|++|+++++||||.++.+|+++++++|+++|++||++++ ++.+++++.|++|+.+++..+..++.+|.
T Consensus 1072 ~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~-~~~~i~~~~g~~f~~~~~~~~~~~~~~~~ 1150 (1394)
T TIGR00956 1072 YAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT-SLQGLQNQMFAVFMATVLFNPLIQQYLPP 1150 (1394)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 78899999999999999999999999999999999999999999999875 68899999999888887776667788999
Q ss_pred HHHHhhHH-HhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch----------HHHHHHHHHHHHHHH
Q 003437 599 FIQERFIF-IRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS----------LLNFWMILFASLITT 667 (820)
Q Consensus 599 f~~eR~vf-~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~----------f~~f~l~l~l~~~~~ 667 (820)
|+.||.+| +||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||+.+ |++||++++++.+++
T Consensus 1151 f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 1230 (1394)
T TIGR00956 1151 FVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYF 1230 (1394)
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHH
Confidence 99999886 8999999999999999999999999999999999999999999743 788888889999999
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHhhcCCC--ccccCCCCC
Q 003437 668 NAYVMLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGK--ECYNGAPGD 745 (820)
Q Consensus 668 ~s~~~~i~a~~ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~~--~c~~~~~~~ 745 (820)
.++|+++++++|+..+|..+++++++++++|+||+++.++||.||+|++|+||++|+|+|++.|||++. .|...+...
T Consensus 1231 ~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~ 1310 (1394)
T TIGR00956 1231 STLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLT 1310 (1394)
T ss_pred HHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccce
Confidence 999999999999999999999999999999999999999999999999999999999999999999988 586644444
Q ss_pred CCCCCCccccccccc----------cccccc-cCCCccc-chHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 003437 746 LSPGPLGEVKLSKLH----------NTTAAL-LRPDCTL-IGEDIVYSMDIQIENIWFDILILLAWGVLYRLFFYLVLRF 813 (820)
Q Consensus 746 ~~p~p~~~~~~~~~~----------~~~~~~-~~~~c~~-~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~l~L~~ 813 (820)
+.| |.|++|.+++. .+..+. .+.+|++ +|+++|+.+|++.++.|+|++|+++|++++ ++++++|++
T Consensus 1311 f~p-p~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~ 1388 (1394)
T TIGR00956 1311 FNP-PSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYW 1388 (1394)
T ss_pred ecC-CCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHHhhhe
Confidence 555 67788876542 111222 2347876 999999999999999999999999999999 889999988
Q ss_pred ccc
Q 003437 814 YSK 816 (820)
Q Consensus 814 ~~~ 816 (820)
+.|
T Consensus 1389 ~~r 1391 (1394)
T TIGR00956 1389 LAR 1391 (1394)
T ss_pred EEE
Confidence 754
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-96 Score=934.69 Aligned_cols=606 Identities=24% Similarity=0.368 Sum_probs=483.0
Q ss_pred ccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CCCceEEEECCEeCCCc--cccceEEEEccCCCCCC
Q 003437 70 KEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ--GSLEGSVRIDGKPVTTS--YMKMVSSYVMQDDQLFP 145 (820)
Q Consensus 70 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~--~~~~G~I~i~G~~~~~~--~~~~~~gyv~Q~~~l~~ 145 (820)
+++.+|+|||+++++||+++|+||||||||||||+|+|+..+ .+++|+|.+||+++... ..++.++||+|++.+++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 346799999999999999999999999999999999998632 34789999999987532 24556899999999999
Q ss_pred CCCHHHHHHHHHHhcCCC----CCCHHHHHHH-HHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEE
Q 003437 146 MLTVFETFMFAAEVRLPP----SISRDEKKKR-VYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLL 220 (820)
Q Consensus 146 ~lTV~e~l~~~~~~~~~~----~~~~~~~~~~-v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lL 220 (820)
.+||+|||.|++.++.+. ..++++..++ ++++++.+||++++|+++|++.+++|||||||||+||++|+.+|++|
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999998877542 2345554444 56789999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhhhhhccCCCCCC
Q 003437 221 FLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPD 299 (820)
Q Consensus 221 llDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~~~ 299 (820)
||||||+|||+.++.++++.|++++++ |+|||+++|||+.++.++||++++|++|+++++|+++++.+||+++|++||+
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~ 311 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPD 311 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999874 9999999999977899999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhhhccccccCCCCceecccCCCCCccccCCCCCCCCCCCCccccchhhcccccccccCCCCCCCCCCCc
Q 003437 300 GENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPRTPASRSKHAISLRSQAFSFSTGNMTPGANSTQ 379 (820)
Q Consensus 300 ~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (820)
+.||+||++++++..... . ..+.+ . ..|+++
T Consensus 312 ~~n~aDfl~~~~~~~~~~-~---------~~~~e----~-----~~~~~~------------------------------ 342 (1394)
T TIGR00956 312 RQTTADFLTSLTSPAERQ-I---------KPGYE----K-----KVPRTP------------------------------ 342 (1394)
T ss_pred CCChHHHHHhccChhhhh-c---------ccccc----c-----cCCCCH------------------------------
Confidence 999999999987532110 0 00000 0 011100
Q ss_pred cccCCCCCCchHHHHHHHhhhhccccccccccccchhhhhhhhhcccchhccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 003437 380 FDYYDDDDDDDEEFDKSLERKTAATPIINMQSGAYNNRLASQFYKDFSVWLYHGVVGTPRRRPSWTPARTPGRTPAKTPI 459 (820)
Q Consensus 380 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (820)
++..+.|.++...+ .+. ++...... ..+ .
T Consensus 343 -------~~~~~~~~~s~~~~----------------~~~----~~~~~~~~--------~~~----------------~ 371 (1394)
T TIGR00956 343 -------QEFETYWRNSPEYA----------------QLM----KEIDEYLD--------RCS----------------E 371 (1394)
T ss_pred -------HHHHHHHHcCHHHH----------------HHH----HHHHHHhh--------hcc----------------c
Confidence 11122232221100 000 00000000 000 0
Q ss_pred CCCccccccccCCCCCCCCCCCCCCccccCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCcHHHHHHHHHHhhHHHhh
Q 003437 460 SGARSFVSGEYYSTPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDMEEKVLDEPDHGPKFANPWLREVAVLSWRTALNVI 539 (820)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~ 539 (820)
. .. .+.+... ...++.. .....+.|..|||+|+++|++|+++++|
T Consensus 372 ~-------------~~-------------------~~~~~~~--~~~~~~~-~~~~~~~~~~s~~~Q~~~l~~R~~~~~~ 416 (1394)
T TIGR00956 372 S-------------DT-------------------KEAYRES--HVAKQSK-RTRPSSPYTVSFSMQVKYCLARNFLRMK 416 (1394)
T ss_pred h-------------hh-------------------HHHHHHH--HHhhhcc-cccCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 0 00 0000000 0000000 0011345788999999999999999999
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHhhHHHhHhcCCCCChhH
Q 003437 540 RTPELFLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFFSSNDAVPTFIQERFIFIRETSHNAYRASS 619 (820)
Q Consensus 540 Rdp~~~~~r~~~~i~~~lliG~lf~~l~~~~~~~~~~~~g~~ff~~~~~~~~~~~~i~~f~~eR~vf~RE~~~g~Y~~~a 619 (820)
|||.++.+|+++++++|+++|++||+++. +.++++++.|++||++++..+.++..++.++.||+||+||+.+++|++++
T Consensus 417 Rd~~~~~~r~~~~ii~~li~G~~F~~~~~-~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~a 495 (1394)
T TIGR00956 417 GNPSFTLFMVFGNIIMALILSSVFYNLPK-NTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSA 495 (1394)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHH
Confidence 99999999999999999999999999876 56789999999999999988888888999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 003437 620 YVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS---LLNFWMILFASLITTNAYVMLVSALVPSYIAGYAVVIATTALFF 696 (820)
Q Consensus 620 Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~---f~~f~l~l~l~~~~~~s~~~~i~a~~ps~~~a~~v~~~~~~~~~ 696 (820)
|++|++++|+|+.++.+++|++|+|||+||+.+ |++|+++++++.+++.++++++++++|+..+|++++++++++++
T Consensus 496 y~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~ 575 (1394)
T TIGR00956 496 DAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALS 575 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999954 78888899999999999999999999999999999999999999
Q ss_pred HhccceecCCCCCcceeehhccChhhHHHHHHHHhhcCCCc--cccCCCCCCCCCCCcccccccccccccc-c-cCCCcc
Q 003437 697 LTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGKE--CYNGAPGDLSPGPLGEVKLSKLHNTTAA-L-LRPDCT 772 (820)
Q Consensus 697 lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~~~--c~~~~~~~~~p~p~~~~~~~~~~~~~~~-~-~~~~c~ 772 (820)
+|+||+++.++||+||+|++|+||++|+|||+++|||++.. |.. ..+.+|++.+. ......|.. + ....|.
T Consensus 576 lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~--~~p~g~~y~~~---~~~~~~C~~~g~~~g~~~ 650 (1394)
T TIGR00956 576 IYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQ--YVPSGGGYDNL---GVTNKVCTVVGAEPGQDY 650 (1394)
T ss_pred HHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccc--cccCCCCCCCC---CccCccccCCCCcCCccc
Confidence 99999999999999999999999999999999999999873 421 11111211110 000011110 0 112456
Q ss_pred cchHHHHH-HcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 003437 773 LIGEDIVY-SMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYSK 816 (820)
Q Consensus 773 ~~G~~~L~-~~g~~~~~~w~~~~il~~~~~~~~~l~~l~L~~~~~ 816 (820)
.+|+++|+ .||++.+|+|+|++||++|+++|+++++++|++.+.
T Consensus 651 ~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 651 VDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred ccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 79999998 689999999999999999999999999999999773
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-95 Score=917.71 Aligned_cols=574 Identities=24% Similarity=0.398 Sum_probs=471.2
Q ss_pred ccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceEEEECCEeCCCccccceEEEEccCCCCCCCCC
Q 003437 70 KEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-SLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLT 148 (820)
Q Consensus 70 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lT 148 (820)
.++.||+|||+.++|||+++|+||||||||||||+|+|++.+. ..+|+|.+||+++.....++.++||+|++.+++.+|
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 3567999999999999999999999999999999999998542 348999999999865444677999999999999999
Q ss_pred HHHHHHHHHHhcCCC-------CCCHHHH------------------------HHHHHHHHHHcCCCccccccccCCCCC
Q 003437 149 VFETFMFAAEVRLPP-------SISRDEK------------------------KKRVYELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 149 V~e~l~~~~~~~~~~-------~~~~~~~------------------------~~~v~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
|+|||.|++.++.+. ..+++++ ...++++|+.+||++++|+.+|++.++
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 999999998875321 1112221 123578999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
+|||||||||+||++|+.+|++|||||||+|||+.++.++++.|+++++ .|+|||+++|||+.+++++||+|++|++|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 9999999999999999999999999999999999999999999999987 599999999999878999999999999999
Q ss_pred EEEEcCccchhhhhhccCCCCCCCCChHHHHHHHhhhccccccCCCCceecccCCCCCccccCCCCCCCCCCCCccccch
Q 003437 277 LVYMGSPVALPAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPRTPASRSKHA 356 (820)
Q Consensus 277 iv~~G~~~~~~~~f~~~g~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (820)
++|+|+++++.+||+++|++||++.|||||++++++..++.. ++.... .|...
T Consensus 416 ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~--------~~~~~~------------~p~~~------- 468 (1470)
T PLN03140 416 IVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQ--------YWADRN------------KPYRY------- 468 (1470)
T ss_pred EEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhh--------hhhccC------------Ccccc-------
Confidence 999999999999999999999999999999999986422110 000000 00000
Q ss_pred hhcccccccccCCCCCCCCCCCccccCCCCCCchHHHHHHHhhhhccccccccccccchhhhhhhhhcccchhccccccC
Q 003437 357 ISLRSQAFSFSTGNMTPGANSTQFDYYDDDDDDDEEFDKSLERKTAATPIINMQSGAYNNRLASQFYKDFSVWLYHGVVG 436 (820)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (820)
...++..+.|.++.... .+. ++.+.
T Consensus 469 ---------------------------~~~~~~~~~~~~s~~~~----------------~~~----~~~~~-------- 493 (1470)
T PLN03140 469 ---------------------------ISVSEFAERFKSFHVGM----------------QLE----NELSV-------- 493 (1470)
T ss_pred ---------------------------CCHHHHHHHHHhcHHHH----------------HHH----HHHhh--------
Confidence 00001122333221100 000 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCccccCCCCCCCCchhhhhhhhhhhccCCCCCC
Q 003437 437 TPRRRPSWTPARTPGRTPAKTPISGARSFVSGEYYSTPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDMEEKVLDEPDHG 516 (820)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (820)
| .+. ... . ......
T Consensus 494 -----~----------------~~~-----------~~~---------------------------------~-~~~~~~ 507 (1470)
T PLN03140 494 -----P----------------FDK-----------SQS---------------------------------H-KAALVF 507 (1470)
T ss_pred -----h----------------hhh-----------hhc---------------------------------c-cccccC
Confidence 0 000 000 0 000012
Q ss_pred CCCCCcHHHHHHHHHHhhHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCC--CHHHHHHHHHHHHHHHHHHHHhhhh
Q 003437 517 PKFANPWLREVAVLSWRTALNVIRTPELFLSREIVFAVMALILSSLFKNLSHH--DFKTINRLLNFYIFAVCLVFFSSND 594 (820)
Q Consensus 517 ~~~~~s~~~Q~~~L~~R~~~~~~Rdp~~~~~r~~~~i~~~lliG~lf~~l~~~--~~~~~~~~~g~~ff~~~~~~~~~~~ 594 (820)
++|..+++.|++.|++|+++.++|||.++..|+++.+++|+++|++||+++.+ +..+.+.+.|.+||++++.++.+++
T Consensus 508 ~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~ 587 (1470)
T PLN03140 508 SKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFA 587 (1470)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999998642 2233455667788888888888889
Q ss_pred cHHHHHHHhhHHHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch---HHHHHHHHHHHHHHHHHHH
Q 003437 595 AVPTFIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS---LLNFWMILFASLITTNAYV 671 (820)
Q Consensus 595 ~i~~f~~eR~vf~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~---f~~f~l~l~l~~~~~~s~~ 671 (820)
+++.++.||+||+|||++++|++++|++|++++++|+.++.+++|++|+|||+||+++ ||+|+++++++.+++.+++
T Consensus 588 ~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~ 667 (1470)
T PLN03140 588 ELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIF 667 (1470)
T ss_pred HHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999964 7888899999999999999
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHhhcCCCccccCCCCCCCCCCC
Q 003437 672 MLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGPL 751 (820)
Q Consensus 672 ~~i~a~~ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~~~c~~~~~~~~~p~p~ 751 (820)
+++++++|++.+|+++++++++++++|+||+|+.++||+||+|++|+||++|||||+++|||.+..+.++ .|
T Consensus 668 ~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~-----~~--- 739 (1470)
T PLN03140 668 RLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNK-----MA--- 739 (1470)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCc-----cc---
Confidence 9999999999999999999999999999999999999999999999999999999999999977532110 00
Q ss_pred ccccccccccccccccCCCcccchHHHHHHcCCCCc--chHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003437 752 GEVKLSKLHNTTAALLRPDCTLIGEDIVYSMDIQIE--NIWFDILILLAWGVLYRLFFYLVLRFYS 815 (820)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~c~~~G~~~L~~~g~~~~--~~w~~~~il~~~~~~~~~l~~l~L~~~~ 815 (820)
+..+...|+++|+.+|+..+ +.|+|+++|++|+++|++++|++|++.+
T Consensus 740 ----------------~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 740 ----------------SDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred ----------------CCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 01234689999999999754 6799999999999999999999999876
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-95 Score=865.01 Aligned_cols=580 Identities=29% Similarity=0.480 Sum_probs=491.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
...|+|+.++.+.+. +.+++|+||++.++||.++||||+|||||||||++|+||...+.++|+|++||.+.+
T Consensus 787 V~~w~dl~~~~~~qG--------~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~ 858 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQG--------GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKD 858 (1391)
T ss_pred eEEEEeCCccccccc--------cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCc
Confidence 466777777664321 356799999999999999999999999999999999999877789999999999998
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
...++|.+|||.|+|.|.|.+||+|.|.|+|.+|+|..++.+++.+.|+++++.|+|++++|..||..+ +|||.+||||
T Consensus 859 q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKr 937 (1391)
T KOG0065|consen 859 QETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKR 937 (1391)
T ss_pred hhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhce
Confidence 777899999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC-CeEEEEcCcc
Q 003437 207 VSIGIDIIHKP-SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR-GRLVYMGSPV 284 (820)
Q Consensus 207 v~ia~aL~~~P-~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~-G~iv~~G~~~ 284 (820)
++||.+|+.+| .||||||||||||+.++..|++.+|++++.|+||+||+|||+..+++.||++++|++ |++||.|+..
T Consensus 938 LTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 938 LTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred eeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 99999999999 899999999999999999999999999999999999999999999999999999997 7999999985
Q ss_pred ----chhhhhhccC-CCCCCCCChHHHHHHHhhhccccccCCCCceecccCCCCCccccCCCCCCCCCCCCccccchhhc
Q 003437 285 ----ALPAHLAGFG-RTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPRTPASRSKHAISL 359 (820)
Q Consensus 285 ----~~~~~f~~~g-~~~~~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (820)
.+++||++.| .+||+..|||||++|+++...+..
T Consensus 1018 ~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~----------------------------------------- 1056 (1391)
T KOG0065|consen 1018 ENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS----------------------------------------- 1056 (1391)
T ss_pred cccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccc-----------------------------------------
Confidence 4567999987 899999999999999975311100
Q ss_pred ccccccccCCCCCCCCCCCccccCCCCCCchHHHHHHHhhhhccccccccccccchhhhhhhhhcccchhccccccCCCC
Q 003437 360 RSQAFSFSTGNMTPGANSTQFDYYDDDDDDDEEFDKSLERKTAATPIINMQSGAYNNRLASQFYKDFSVWLYHGVVGTPR 439 (820)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (820)
.+.|..+.|.+|.+.+... +.+ ++
T Consensus 1057 -------------------------~~~D~a~~w~~S~e~k~~~------------e~v-----~~-------------- 1080 (1391)
T KOG0065|consen 1057 -------------------------LSVDFAEIWKNSEEYKRNK------------ELV-----KE-------------- 1080 (1391)
T ss_pred -------------------------cCccHHHHHhccHHHHHHH------------HHH-----HH--------------
Confidence 0012234444443221110 000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCccccCCCCCCCCchhhhhhhhhhhccCCCCCCCCC
Q 003437 440 RRPSWTPARTPGRTPAKTPISGARSFVSGEYYSTPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDMEEKVLDEPDHGPKF 519 (820)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (820)
++. .++ ..+ . +....++|
T Consensus 1081 -------------------l~~-----------~~~----------~~~-------~---------------~~~~~~~f 1098 (1391)
T KOG0065|consen 1081 -------------------LSQ-----------PPP----------GFS-------T---------------DLEFKTRF 1098 (1391)
T ss_pred -------------------Hhc-----------CCc----------cCC-------c---------------cccccccc
Confidence 000 000 000 0 00114579
Q ss_pred CCcHHHHHHHHHHhhHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhcHHH-
Q 003437 520 ANPWLREVAVLSWRTALNVIRTPELFLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFFSSNDAVPT- 598 (820)
Q Consensus 520 ~~s~~~Q~~~L~~R~~~~~~Rdp~~~~~r~~~~i~~~lliG~lf~~l~~~~~~~~~~~~g~~ff~~~~~~~~~~~~i~~- 598 (820)
++|+|.|++.++||++..+||+|.++++|++++++.||++|+.||+.+ +++++++|..|++|.++++.....++.++.
T Consensus 1099 a~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g-~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~ 1177 (1391)
T KOG0065|consen 1099 AQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVG-HNVQGLQNAMGAAYMATVFSGPNNNQLQQPA 1177 (1391)
T ss_pred chhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecC-CcHHHHHHHHHHHHHHHHHhhhhhhhhhhhH
Confidence 999999999999999999999999999999999999999999999987 578999999999998888877766665554
Q ss_pred HHHHhhHHHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch---HHHHHHHHHHHHHHHHHHHHHHH
Q 003437 599 FIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS---LLNFWMILFASLITTNAYVMLVS 675 (820)
Q Consensus 599 f~~eR~vf~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~---f~~f~l~l~l~~~~~~s~~~~i~ 675 (820)
+..||.+++||+++|+|++.+|++|.+++|+|+.++++++|.+|+|||+||..+ |+.||++++++.+.-+++|+++.
T Consensus 1178 v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~ 1257 (1391)
T KOG0065|consen 1178 VATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLV 1257 (1391)
T ss_pred HhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888889999999999999999999999999999999999999999999864 67788888888889999999999
Q ss_pred HhcchHHHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHhhcCCC--ccccCCCCCCCCCCCcc
Q 003437 676 ALVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGK--ECYNGAPGDLSPGPLGE 753 (820)
Q Consensus 676 a~~ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~~--~c~~~~~~~~~p~p~~~ 753 (820)
+++||.++|..+.+.+..++.+|+||++|++.||.||+|+||+||+.|..++++..++++. .|.........| |.|+
T Consensus 1258 s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~p-p~g~ 1336 (1391)
T KOG0065|consen 1258 SLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDP-PSGQ 1336 (1391)
T ss_pred HhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCC-CCCc
Confidence 9999999999999999999999999999999999999999999999999999999999988 676544444444 6777
Q ss_pred ccccccc-----------cccccccCCCccc-chHHHHHHcCCCCcchHHHHHHH
Q 003437 754 VKLSKLH-----------NTTAALLRPDCTL-IGEDIVYSMDIQIENIWFDILIL 796 (820)
Q Consensus 754 ~~~~~~~-----------~~~~~~~~~~c~~-~G~~~L~~~g~~~~~~w~~~~il 796 (820)
+|.+++- +......+..|++ .++++|..+++.+.+.|+|+||.
T Consensus 1337 tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrnfgi~ 1391 (1391)
T KOG0065|consen 1337 TCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRNFGIF 1391 (1391)
T ss_pred CHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHhhccC
Confidence 7777542 1112122336765 79999999999999999999873
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-88 Score=808.29 Aligned_cols=591 Identities=28% Similarity=0.438 Sum_probs=488.9
Q ss_pred cccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceEEEECCEeCCCccccceEEEEccCCCCCCCCCH
Q 003437 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-SLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTV 149 (820)
Q Consensus 71 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV 149 (820)
...+|+|+|+.++||+++.++||+||||||||++|+|-+... ...|+|.+||.+.+....++.++|+.|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 346999999999999999999999999999999999987432 2468999999998765557788999999999999999
Q ss_pred HHHHHHHHHhcCCCC----CCHHHHHH-HHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 003437 150 FETFMFAAEVRLPPS----ISRDEKKK-RVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224 (820)
Q Consensus 150 ~e~l~~~~~~~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDE 224 (820)
+|+|.|+++++.+.. .++.++.. ..+.+++.+||++|+||++|++..||+||||||||++|.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999999999987632 33334332 6778999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhhhhhccCCCCCCCCCh
Q 003437 225 PTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDGENS 303 (820)
Q Consensus 225 PtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~ 303 (820)
+|+|||+.++.++++.||++++ .+.|+++++|||+.+++++||+|++|++|+++|+||.+++++||+++|+.||+++++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ 366 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGT 366 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCH
Confidence 9999999999999999999997 599999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccCCCCceecccCCCCCccccCCCCCCCCCCCCccccchhhcccccccccCCCCCCCCCCCccccC
Q 003437 304 LEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAARTPFPKIPRTPASRSKHAISLRSQAFSFSTGNMTPGANSTQFDYY 383 (820)
Q Consensus 304 ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (820)
|||+.++++..++..+ +..... ..+.++
T Consensus 367 ADfLt~vts~k~~~~~--------~~~~~~----------~~~~~~---------------------------------- 394 (1391)
T KOG0065|consen 367 ADFLTEVTSKKDQEQY--------WNKRSK----------PYPYTS---------------------------------- 394 (1391)
T ss_pred HHHHHHhhcCcccccc--------ccccCC----------CcccCC----------------------------------
Confidence 9999999874322211 000000 000000
Q ss_pred CCCCCchHHHHHHHhhhhccccccccccccchhhhhhhhhcccchhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 003437 384 DDDDDDDEEFDKSLERKTAATPIINMQSGAYNNRLASQFYKDFSVWLYHGVVGTPRRRPSWTPARTPGRTPAKTPISGAR 463 (820)
Q Consensus 384 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (820)
.+++.+.+..... +. ++. .+ ++
T Consensus 395 ------~~ef~~~~~~s~~-----------~~-~l~----~~---------------------------------l~--- 416 (1391)
T KOG0065|consen 395 ------VSEFAEYFLNSED-----------YA-KLK----KE---------------------------------LS--- 416 (1391)
T ss_pred ------HHHHHHHHhcchh-----------hH-HHH----HH---------------------------------hc---
Confidence 0222222211100 00 000 00 00
Q ss_pred cccccccCCCCCCCCCCCCCCccccCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCcHHHHHHHHHHhhHHHhhcChH
Q 003437 464 SFVSGEYYSTPQQNPSRLKTPVVFSTSTDPYAPSYEQELEDMEEKVLDEPDHGPKFANPWLREVAVLSWRTALNVIRTPE 543 (820)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rdp~ 543 (820)
.+..+ + +........++|..++|.|++.|++|.|+.+.||..
T Consensus 417 ---------~~~~~----------~-------------------k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~ 458 (1391)
T KOG0065|consen 417 ---------KPYDK----------S-------------------KKHKAALVSSKYSVPYWEQVKACTIREFLLMKRNYF 458 (1391)
T ss_pred ---------chhhh----------h-------------------hccchhhcCCceeccHHHHHHHHHHHHHHHHhCCce
Confidence 00000 0 000000114578899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHhhHHHhHhcCCCCChhHHHHH
Q 003437 544 LFLSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFFSSNDAVPTFIQERFIFIRETSHNAYRASSYVVS 623 (820)
Q Consensus 544 ~~~~r~~~~i~~~lliG~lf~~l~~~~~~~~~~~~g~~ff~~~~~~~~~~~~i~~f~~eR~vf~RE~~~g~Y~~~aY~la 623 (820)
++..+.++.+++|+++|++|++.+..+..+.+.+.|++||++++.+|.++++++..++.||||+|||...+|+||||.++
T Consensus 459 ~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p~A~al~ 538 (1391)
T KOG0065|consen 459 YYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPPWAEALA 538 (1391)
T ss_pred EEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccChHHHHHH
Confidence 99999999999999999999998734667899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHhHHhhhhhhccCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcc
Q 003437 624 SLLVYLPFFGIQGLTFAAITKLLLKLHS---SLLNFWMILFASLITTNAYVMLVSALVPSYIAGYAVVIATTALFFLTCG 700 (820)
Q Consensus 624 ~~l~elP~~~~~~~if~~i~Y~m~Gl~~---~f~~f~l~l~l~~~~~~s~~~~i~a~~ps~~~a~~v~~~~~~~~~lf~G 700 (820)
.+++++|+.++.+++|.+|+||++||.+ +||+|+++++++..++.+++++++++++++..|+.++.+.++.+.+++|
T Consensus 539 s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~G 618 (1391)
T KOG0065|consen 539 STLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGG 618 (1391)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcc
Confidence 9999999999999999999999999986 4888899999999999999999999999999999999999999999999
Q ss_pred ceecCCCCCcceeehhccChhhHHHHHHHHhhcCCCccccCCCCCCCCCCCccccccccccccccccC-C-CcccchHHH
Q 003437 701 FFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGPLGEVKLSKLHNTTAALLR-P-DCTLIGEDI 778 (820)
Q Consensus 701 f~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~~~c~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~-~-~c~~~G~~~ 778 (820)
|+||.++||+||+|++||||+.|+||++++|||++++..+. |.+|+|++.+ ..+..|.+.+. . .-.+.|+++
T Consensus 619 f~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~---p~gp~y~n~~---~~~~~c~~~~~~~G~~~v~g~~~ 692 (1391)
T KOG0065|consen 619 FVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCS---PSGPAYDNIS---IENKVCAATGATLGNDYVSGRDY 692 (1391)
T ss_pred eeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCC---CCCCcccccc---cccccchhhccccCceEEecccc
Confidence 99999999999999999999999999999999999854331 5566665532 11122211000 0 112357777
Q ss_pred H-HHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003437 779 V-YSMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYS 815 (820)
Q Consensus 779 L-~~~g~~~~~~w~~~~il~~~~~~~~~l~~l~L~~~~ 815 (820)
+ .+|++++.|.|+|+||++||.++|.++..+++.|.+
T Consensus 693 l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 693 LKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred cccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 7 467788899999999999999999999999999886
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=423.79 Aligned_cols=220 Identities=33% Similarity=0.548 Sum_probs=200.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+|+|+. ..+|+|||++|++||+++|+||||||||||||||+|+.. +++|+|.++|.++.
T Consensus 2 mi~i~~l~K~fg~------------~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 2 MIEIKNLSKSFGD------------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred eEEEEeeeEEeCC------------eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 4899999999964 359999999999999999999999999999999999885 46899999998764
Q ss_pred C----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 T----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
. ...|+.+|+|||+.+|||++||.||+.++...- .+.++++.++++.++|+++||.+.+|.+.. +||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYPA-----QLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----ccCcH
Confidence 3 236788999999999999999999999986432 246889999999999999999999888764 79999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+|||||+.+|+++++|||||+|||+...++++.+++|+++|.|.|++||++.. +.+.+|||++|++|+++..|+
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~G~iie~g~ 219 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQGKIIEEGP 219 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeCCEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999997 788999999999999999999
Q ss_pred ccchhh
Q 003437 283 PVALPA 288 (820)
Q Consensus 283 ~~~~~~ 288 (820)
|+++..
T Consensus 220 p~~~f~ 225 (240)
T COG1126 220 PEEFFD 225 (240)
T ss_pred HHHHhc
Confidence 987643
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=419.90 Aligned_cols=224 Identities=34% Similarity=0.505 Sum_probs=202.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
+|+++||+|.|..+. .....+|+|||++|++||+++|+|.||||||||+|+|.++.. |++|+|.++|+++.
T Consensus 1 mI~l~~vsK~~~~~~-------~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~ 71 (339)
T COG1135 1 MIELENVSKTFGQTG-------TGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLT 71 (339)
T ss_pred CeEEEeeeeeeccCC-------CCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecc
Confidence 389999999997531 123469999999999999999999999999999999999875 56899999998876
Q ss_pred Cc------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 127 TS------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 127 ~~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
.. ..|+.+|++||+..|+...||.||+.|++++. +.++++.++||.++|+.+||++.++.+. .+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYP-----AQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCc-----hhcC
Confidence 42 35778999999999999999999999999876 4789999999999999999999887775 4799
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
|||||||+|||||+.+|+|||+|||||+|||.+...|+++|+++.++ |.||+++||+++ .+.++||||.+|++|++++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~G~lvE 222 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQGRLVE 222 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeCCEEEE
Confidence 99999999999999999999999999999999999999999999865 999999999998 4899999999999999999
Q ss_pred EcCccchhh
Q 003437 280 MGSPVALPA 288 (820)
Q Consensus 280 ~G~~~~~~~ 288 (820)
.|+..++..
T Consensus 223 ~G~v~~vF~ 231 (339)
T COG1135 223 EGTVSEVFA 231 (339)
T ss_pred eccHHHhhc
Confidence 999988754
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=401.68 Aligned_cols=218 Identities=29% Similarity=0.496 Sum_probs=200.2
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||||.|.+ +.+++|+|++|++||+++++|||||||||+||+|.+++. +++|+|++||+++..
T Consensus 2 I~~~nvsk~y~~------------~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~~ 67 (309)
T COG1125 2 IEFENVSKRYGN------------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDISD 67 (309)
T ss_pred ceeeeeehhcCC------------ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeeccc
Confidence 899999999963 359999999999999999999999999999999999985 468999999999875
Q ss_pred c---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCCCCCCCChH
Q 003437 128 S---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS--ATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 128 ~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~ig~~~~~~LSGG 202 (820)
. ..|+.+|||-|...|||++||.||+.+...+. ++++++.+++++++|+.+||++ +++ ++|++||||
T Consensus 68 ~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~-----RyP~eLSGG 139 (309)
T COG1125 68 LDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYAD-----RYPHELSGG 139 (309)
T ss_pred CCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhh-----cCchhcCcc
Confidence 3 46888999999999999999999999988765 5788999999999999999975 444 456789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|+|||.+||||+.+|++|++|||+++|||.++.++.+.++++.++ |+|||++|||.+ ++..++|||.+|++|+++..+
T Consensus 140 QQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~ 218 (309)
T COG1125 140 QQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYD 218 (309)
T ss_pred hhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeC
Confidence 999999999999999999999999999999999999999999875 999999999998 588999999999999999999
Q ss_pred Cccchhh
Q 003437 282 SPVALPA 288 (820)
Q Consensus 282 ~~~~~~~ 288 (820)
+|++++.
T Consensus 219 ~P~~il~ 225 (309)
T COG1125 219 TPDEILA 225 (309)
T ss_pred CHHHHHh
Confidence 9999864
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-48 Score=390.09 Aligned_cols=222 Identities=34% Similarity=0.527 Sum_probs=200.8
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|++++|+++|+. +.|++|||++|++||+++||||||+|||||||+|.|+++| ++|+|+++|++
T Consensus 6 ~~~I~vr~v~~~fG~------------~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~ 71 (263)
T COG1127 6 EPLIEVRGVTKSFGD------------RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGED 71 (263)
T ss_pred cceEEEeeeeeecCC------------EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcc
Confidence 456999999999964 4599999999999999999999999999999999999864 67999999999
Q ss_pred CCCc------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCC
Q 003437 125 VTTS------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRR 197 (820)
Q Consensus 125 ~~~~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~ 197 (820)
+... ..++++|++||+..||..+||.||+.|..+-+ ...+++..++.+..-|+.+||... ++.+ |.
T Consensus 72 i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----Ps 144 (263)
T COG1127 72 IPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADLY-----PS 144 (263)
T ss_pred hhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhhC-----ch
Confidence 8641 35677999999999999999999999987654 347888889999999999999876 5544 56
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
+|||||+||++|||||+.+|++||+||||+||||.++..+.+++++|.+. |.|+|++|||.+. ++.+|||+++|.+|+
T Consensus 145 ELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s-~~~i~Drv~~L~~gk 223 (263)
T COG1127 145 ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDS-LLTIADRVAVLADGK 223 (263)
T ss_pred hhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHH-HHhhhceEEEEeCCE
Confidence 89999999999999999999999999999999999999999999999875 9999999999985 899999999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
|++.|+++++.+
T Consensus 224 v~~~Gt~~el~~ 235 (263)
T COG1127 224 VIAEGTPEELLA 235 (263)
T ss_pred EEEeCCHHHHHh
Confidence 999999998864
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=392.45 Aligned_cols=210 Identities=33% Similarity=0.522 Sum_probs=184.3
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
++++||++.|..+. ....+|+++|++|++||+++|+|||||||||||++|+|+..| ++|+|.++|+++..
T Consensus 2 i~~~~v~k~y~~~~--------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~ 71 (226)
T COG1136 2 IELKNVSKIYGLGG--------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTK 71 (226)
T ss_pred cEEeeeEEEeccCC--------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCc
Confidence 67999999996532 124699999999999999999999999999999999999864 78999999998864
Q ss_pred c-------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-ccccCCCCCCC
Q 003437 128 S-------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATH-TYIGNEGRRGV 199 (820)
Q Consensus 128 ~-------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-~~ig~~~~~~L 199 (820)
. .+++.+|||||+..|+|++||+||+.+++.+.. .+..+.+++++++++.+||++..+ +++ .+|
T Consensus 72 l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----~eL 143 (226)
T COG1136 72 LSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKKKP-----SEL 143 (226)
T ss_pred CCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccCCc-----hhc
Confidence 2 245679999999999999999999999876652 333366788999999999997665 544 479
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
||||||||+|||||+.+|++||+||||.+||+.++.+|+++|++++++ |+|||++|||+. +..+|||++.|.+|++
T Consensus 144 SGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGKI 220 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCee
Confidence 999999999999999999999999999999999999999999999875 999999999986 6678999999999984
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=414.81 Aligned_cols=223 Identities=34% Similarity=0.563 Sum_probs=200.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.++++||++.|++ .+.+|+||||+|++||++||+||||||||||+|+|+|++.| ++|+|.++|.+..
T Consensus 4 ~i~~~~l~k~~~~-----------~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~~ 70 (293)
T COG1131 4 VIEVRNLTKKYGG-----------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVV 70 (293)
T ss_pred eeeecceEEEeCC-----------CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeCc
Confidence 4889999999962 13599999999999999999999999999999999999864 6899999999886
Q ss_pred C--ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 127 T--SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 127 ~--~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
. ...++.+||++|++.+++.+||+|||.|.+.++.. +....+++++++++.+||.+..+++++ +||+|||
T Consensus 71 ~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~lS~G~k 142 (293)
T COG1131 71 KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGL---SKEEAEERIEELLELFGLEDKANKKVR-----TLSGGMK 142 (293)
T ss_pred cCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHcCCchhhCcchh-----hcCHHHH
Confidence 5 34577899999999999999999999999998743 224567789999999999986666664 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG-SIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
|||+||+||+++|++|||||||+|||+.++.++.++|++++++| +||+++||+++. +..+||+|++|++|++++.|++
T Consensus 143 qrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e-~~~~~d~v~il~~G~~~~~g~~ 221 (293)
T COG1131 143 QRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEE-AEELCDRVIILNDGKIIAEGTP 221 (293)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHH-HHHhCCEEEEEeCCEEEEeCCH
Confidence 99999999999999999999999999999999999999999987 899999999984 8889999999999999999998
Q ss_pred cchhhhhh
Q 003437 284 VALPAHLA 291 (820)
Q Consensus 284 ~~~~~~f~ 291 (820)
+++...+.
T Consensus 222 ~~l~~~~~ 229 (293)
T COG1131 222 EELKEKFG 229 (293)
T ss_pred HHHHHhhc
Confidence 88766654
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-48 Score=401.34 Aligned_cols=222 Identities=34% Similarity=0.496 Sum_probs=196.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++| .+|+|+++|+++.
T Consensus 2 ~L~~~~ls~~y~~------------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i~ 67 (258)
T COG1120 2 MLEVENLSFGYGG------------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDIA 67 (258)
T ss_pred eeEEEEEEEEECC------------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCchh
Confidence 4899999999964 3599999999999999999999999999999999999864 5799999999986
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP-SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
. ....+.++||||.......+||+|.+.++..-+... ....++.++.++++|+.+|+.+.+++.+. +||||
T Consensus 68 ~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGG 142 (258)
T COG1120 68 SLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSGG 142 (258)
T ss_pred hcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccChh
Confidence 4 345678999999998888899999999885422111 11234455689999999999999999886 59999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|||||.|||||+++|++|+|||||+.||...+.+++++++++++ +|.|||+++||++. +.++||++++|++|+++..|
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~G~i~a~G 221 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKDGKIVAQG 221 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEeec
Confidence 99999999999999999999999999999999999999999995 59999999999986 78899999999999999999
Q ss_pred Cccchhh
Q 003437 282 SPVALPA 288 (820)
Q Consensus 282 ~~~~~~~ 288 (820)
+|++++.
T Consensus 222 ~p~evlT 228 (258)
T COG1120 222 TPEEVLT 228 (258)
T ss_pred CcchhcC
Confidence 9988763
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-48 Score=418.50 Aligned_cols=220 Identities=32% Similarity=0.498 Sum_probs=200.8
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ ..+|+|+|++|++||+++|+||||||||||||+|+|+.. +++|+|.++|+++
T Consensus 4 ~~l~i~~v~k~yg~------------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i 69 (352)
T COG3842 4 PALEIRNVSKSFGD------------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDI 69 (352)
T ss_pred ceEEEEeeeeecCC------------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 45999999999963 359999999999999999999999999999999999985 5689999999999
Q ss_pred CCc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 126 TTS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 126 ~~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
+.. ..+|.+|+|||+..|||+|||+||+.|+++++. ...+++.+++|+++|+.++|++.+++++ .+||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK--KLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC--CCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHH
Confidence 753 357889999999999999999999999988542 3456778899999999999999887776 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
|||+|||||+.+|++||||||.|+||..-+.++...|+++.+ .|.|.|++|||.+ ++..++|||.+|++|+|...|+|
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP 221 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTP 221 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCCceeecCCH
Confidence 999999999999999999999999999999999999999986 4999999999987 58899999999999999999999
Q ss_pred cchh
Q 003437 284 VALP 287 (820)
Q Consensus 284 ~~~~ 287 (820)
+++.
T Consensus 222 ~eiY 225 (352)
T COG3842 222 EEIY 225 (352)
T ss_pred HHHh
Confidence 9884
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-48 Score=388.43 Aligned_cols=224 Identities=30% Similarity=0.489 Sum_probs=197.0
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|+++ +++|+|||++|++||+++|+||||||||||||+|+|+.. +++|+|.+||.++
T Consensus 2 ~~i~~~nl~k~yp~~-----------~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 2 MMIEVKNLSKTYPGG-----------HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred ceEEEeeeeeecCCC-----------ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 359999999999643 469999999999999999999999999999999999874 5689999999887
Q ss_pred CCc------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 003437 126 TTS------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-----PSISRDEKKKRVYELLDQLGLRSATHTYIGNE 194 (820)
Q Consensus 126 ~~~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-----~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~ 194 (820)
... .+++.+||++|++.|.+.+||.+|+..+..-+.+ -++..++.+.++-+.|+++||.+.+.++.+
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-- 146 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-- 146 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc--
Confidence 542 3567899999999999999999999987543321 122334556778899999999999888876
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
+|||||+|||+|||||+.+|+++|.|||+++|||.++..||+.|+++++ +|.|||++.|+.+. +.++|||++-|+
T Consensus 147 ---~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 147 ---TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred ---cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 5999999999999999999999999999999999999999999999986 69999999999986 889999999999
Q ss_pred CCeEEEEcCccchhh
Q 003437 274 RGRLVYMGSPVALPA 288 (820)
Q Consensus 274 ~G~iv~~G~~~~~~~ 288 (820)
+|+++|.|+++++.+
T Consensus 223 ~G~ivfDg~~~el~~ 237 (258)
T COG3638 223 AGRIVFDGPASELTD 237 (258)
T ss_pred CCcEEEeCChhhhhH
Confidence 999999999988643
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=413.05 Aligned_cols=219 Identities=33% Similarity=0.531 Sum_probs=202.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++. .+|+|+|++|++||+++|+||||||||||||+|||+.. +++|+|.|+|++++
T Consensus 3 ~i~l~~v~K~yg~~------------~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt 68 (338)
T COG3839 3 ELELKNVRKSFGSF------------EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVT 68 (338)
T ss_pred EEEEeeeEEEcCCc------------eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECC
Confidence 59999999999642 18999999999999999999999999999999999985 56899999999998
Q ss_pred C-ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 T-SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~-~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
. ...+|.+++|||+..|||+|||+||+.|+++++ +.++++.+++|+++.+.|+|++.+|+++. +|||||||
T Consensus 69 ~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----~LSGGQrQ 140 (338)
T COG3839 69 DLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----QLSGGQRQ 140 (338)
T ss_pred CCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCcc-----cCChhhHH
Confidence 6 345678999999999999999999999999876 46788999999999999999999988864 79999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+++|+++++|||+|.||...+..+...|+++.++ |.|+|.+|||.. ++..++|||.+|++|+|...|+|.
T Consensus 141 RVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~ 219 (338)
T COG3839 141 RVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPL 219 (338)
T ss_pred HHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChH
Confidence 999999999999999999999999999999999999999875 999999999987 588899999999999999999999
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 220 ely~ 223 (338)
T COG3839 220 ELYE 223 (338)
T ss_pred HHhh
Confidence 8854
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-47 Score=388.47 Aligned_cols=204 Identities=36% Similarity=0.540 Sum_probs=185.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.+++++++++|.. ..+|+|+|++|.+||+++|+||||||||||||+|+|+.. +++|+|.++|+++.
T Consensus 3 ~l~i~~v~~~f~~------------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v~ 68 (248)
T COG1116 3 LLEIEGVSKSFGG------------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPVT 68 (248)
T ss_pred eEEEEeeEEEeCc------------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCcccC
Confidence 4899999999964 359999999999999999999999999999999999985 46899999999984
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ....++||||++.|+|.+||.||+.++...+. .++++.+++++++|+.+||.+..|++. ++||||||||
T Consensus 69 ~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMrQR 138 (248)
T COG1116 69 G--PGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYP-----HQLSGGMRQR 138 (248)
T ss_pred C--CCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCc-----cccChHHHHH
Confidence 3 34668999999999999999999999988652 567777889999999999999887775 5799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
|+|||||+.+|++|+||||+++||..++..+.+.|.++.+ .++||+++|||.++ +..++|||++|.++
T Consensus 139 VaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~E-Av~LsdRivvl~~~ 207 (248)
T COG1116 139 VAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDE-AVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHhhhCEEEEecCC
Confidence 9999999999999999999999999999999999999975 59999999999985 67799999999984
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-47 Score=392.28 Aligned_cols=220 Identities=32% Similarity=0.553 Sum_probs=191.8
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|... ++|+||||++++|++++|+||||||||||+|+|.|+++ |.+|+|.++|.+.
T Consensus 3 ~~i~v~nl~v~y~~~------------~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 3 PMIEVENLTVSYGNR------------PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred cEEEEeeeEEEECCE------------eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 359999999999632 49999999999999999999999999999999999885 4689999999988
Q ss_pred CCccccceEEEEccCC---CCCCCCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 126 TTSYMKMVSSYVMQDD---QLFPMLTVFETFMFAAEVRLP--PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~---~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
.....+.++|||||.. .-|| +||+|.+..+..-+.. ...++ +.++.++++|+.+|+.+.+|+.+| .||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~-~d~~~v~~aL~~Vgm~~~~~r~i~-----~LS 141 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNK-KDKEKVDEALERVGMEDLRDRQIG-----ELS 141 (254)
T ss_pred cccccCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccH-HHHHHHHHHHHHcCchhhhCCccc-----ccC
Confidence 6544457899999954 3466 5999999987433221 11233 347889999999999999999998 599
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
|||+|||.|||||+++|++|+|||||+|+|+.++..++++|++++++|+||++++||++. +.++||+|+.| ++++++.
T Consensus 142 GGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~-v~~~~D~vi~L-n~~~~~~ 219 (254)
T COG1121 142 GGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICL-NRHLIAS 219 (254)
T ss_pred cHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHH-hHhhCCEEEEE-cCeeEec
Confidence 999999999999999999999999999999999999999999999899999999999985 88999999999 6678999
Q ss_pred cCccchhh
Q 003437 281 GSPVALPA 288 (820)
Q Consensus 281 G~~~~~~~ 288 (820)
|+++++.+
T Consensus 220 G~~~~~~~ 227 (254)
T COG1121 220 GPPEEVLT 227 (254)
T ss_pred cChhhccC
Confidence 99988754
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=374.77 Aligned_cols=220 Identities=34% Similarity=0.504 Sum_probs=203.2
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|++++|+++|+.. .++++||||+++.||+++|+|||||||||+||+|++++. |++|+|+++|.+...
T Consensus 2 l~v~~l~K~y~~~-----------v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~ 68 (245)
T COG4555 2 LEVTDLTKSYGSK-----------VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVR 68 (245)
T ss_pred eeeeehhhhccCH-----------HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeeccccc
Confidence 7899999999653 348999999999999999999999999999999999996 468999999998754
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 --SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 --~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
...++.+|.++.+..++..||++|||.|.+++. ++.+.+.+++++++.+.|+|.+++|+.+| ++|.|+||
T Consensus 69 ~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kq 140 (245)
T COG4555 69 DPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQ 140 (245)
T ss_pred ChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHH
Confidence 356888999997788999999999999999986 46788889999999999999999999998 59999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
||+|||||+++|++++|||||||||..+...+.+.++++.++|++||++||.++ ++..+||+|++|++|++|+.|++++
T Consensus 141 kV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~Gevv~~gs~~~ 219 (245)
T COG4555 141 KVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEA 219 (245)
T ss_pred HHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEecCcEEEcCCHHH
Confidence 999999999999999999999999999999999999999999999999999997 5899999999999999999999987
Q ss_pred hhhh
Q 003437 286 LPAH 289 (820)
Q Consensus 286 ~~~~ 289 (820)
+...
T Consensus 220 l~~r 223 (245)
T COG4555 220 LDAR 223 (245)
T ss_pred HHHH
Confidence 7643
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-47 Score=368.16 Aligned_cols=213 Identities=32% Similarity=0.530 Sum_probs=194.9
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+|+||++.|+.. +.+|+||||+|++||++-|+||||||||||||+|.+... ++.|+|+++|+++..
T Consensus 2 I~f~~V~k~Y~~g-----------~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~ 68 (223)
T COG2884 2 IRFENVSKAYPGG-----------REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSR 68 (223)
T ss_pred eeehhhhhhcCCC-----------chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeeccc
Confidence 8899999999753 459999999999999999999999999999999999775 568999999999864
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ..|+++|+||||..|+++.||.||+.|+.+.. +.++++.+++|.++|+.+||.+.++... .+|||
T Consensus 69 l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----~~LSG 140 (223)
T COG2884 69 LKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALP-----SQLSG 140 (223)
T ss_pred ccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCc-----cccCc
Confidence 2 36788999999999999999999999998876 4678899999999999999999887765 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
||||||+||||++.+|++||.||||.+|||..+.+|++++.++...|+||+++|||.+. +.++-.|++.|++|+++...
T Consensus 141 GEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l-v~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL-VNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH-HHhccCcEEEEeCCEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999874 77788899999999999765
Q ss_pred C
Q 003437 282 S 282 (820)
Q Consensus 282 ~ 282 (820)
.
T Consensus 220 ~ 220 (223)
T COG2884 220 S 220 (223)
T ss_pred c
Confidence 4
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-47 Score=393.64 Aligned_cols=222 Identities=31% Similarity=0.501 Sum_probs=198.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE---
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK--- 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~--- 123 (820)
.|.++|+++.++. ..+++|||+.|+.||++||+|||||||||||++|+|++. +++|.|.+||+
T Consensus 2 ~i~i~~~~~~~~~------------~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~ 67 (345)
T COG1118 2 SIRINNVKKRFGA------------FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLF 67 (345)
T ss_pred ceeehhhhhhccc------------ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEecc
Confidence 4888899988854 348999999999999999999999999999999999985 46899999999
Q ss_pred eCCC-ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 124 PVTT-SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 124 ~~~~-~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
+.+. ....+++|||+|+..+|++|||.||+.|+++++ ....++.+.+.++.++|+.+.|++..+++ |.+||||
T Consensus 68 D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGG 141 (345)
T COG1118 68 DVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGG 141 (345)
T ss_pred chhccchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChH
Confidence 5544 234577999999999999999999999999877 23346778889999999999999876655 5689999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|||||++||||+..|++|+||||+++||..-+.++.+.|+++.++ |.|++++|||++ ++.++||||++|++|+|...|
T Consensus 142 QrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg 220 (345)
T COG1118 142 QRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVG 220 (345)
T ss_pred HHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeC
Confidence 999999999999999999999999999999999999999999876 999999999998 589999999999999999999
Q ss_pred Cccchhhh
Q 003437 282 SPVALPAH 289 (820)
Q Consensus 282 ~~~~~~~~ 289 (820)
+++++.++
T Consensus 221 ~p~ev~~~ 228 (345)
T COG1118 221 PPDEVYDH 228 (345)
T ss_pred CHHHHhcC
Confidence 99998643
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=402.99 Aligned_cols=221 Identities=29% Similarity=0.468 Sum_probs=195.7
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|..+. ..+.+|+||||+|++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++..
T Consensus 2 I~~~~lsk~y~~~~--------~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~~ 71 (343)
T TIGR02314 2 IKLSNITKVFHQGT--------KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLTT 71 (343)
T ss_pred EEEEEEEEEECCCC--------cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCc
Confidence 89999999995321 12359999999999999999999999999999999999985 468999999999864
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ..++.+||+||+..+++.+||+||+.++.... +.++++.++++.++++.+||.+..|++++ +|||
T Consensus 72 ~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~~-----~LSg 143 (343)
T TIGR02314 72 LSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPS-----NLSG 143 (343)
T ss_pred CCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCH
Confidence 2 13567999999999999999999999986543 24566777889999999999988877764 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
||||||+|||||+.+|++|||||||++||+.++..++++|++++++ |.|||++||+++. +.++||++++|++|++++.
T Consensus 144 GqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~-v~~~~d~v~vl~~G~iv~~ 222 (343)
T TIGR02314 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDV-VKRICDCVAVISNGELIEQ 222 (343)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999875 9999999999974 7889999999999999999
Q ss_pred cCccchh
Q 003437 281 GSPVALP 287 (820)
Q Consensus 281 G~~~~~~ 287 (820)
|+++++.
T Consensus 223 g~~~~v~ 229 (343)
T TIGR02314 223 GTVSEIF 229 (343)
T ss_pred cCHHHHH
Confidence 9988774
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=398.59 Aligned_cols=221 Identities=29% Similarity=0.465 Sum_probs=197.5
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ +.+|+||||+|++||+++|+||||||||||+|+|+|++. +++|+|.++|.++
T Consensus 6 ~~i~i~~l~k~~~~------------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~ 71 (306)
T PRK13537 6 APIDFRNVEKRYGD------------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPV 71 (306)
T ss_pred ceEEEEeEEEEECC------------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEec
Confidence 35999999999953 249999999999999999999999999999999999885 4689999999998
Q ss_pred CCc--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 126 TTS--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 126 ~~~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
... ..++.+|||+|++.+++.+||+||+.+.+.++ +.+..+..++++++++.++|.+..++.++ +|||||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVG-----ELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHH
Confidence 542 34577999999999999999999999877654 23455566788999999999988888875 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
||||+||+||+++|++|||||||+|||+.++..+.++|++++++|+|||++||+++ ++.++||+|++|++|++++.|++
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~ 222 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAP 222 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999878999999999998 48889999999999999999999
Q ss_pred cchhhh
Q 003437 284 VALPAH 289 (820)
Q Consensus 284 ~~~~~~ 289 (820)
+++...
T Consensus 223 ~~l~~~ 228 (306)
T PRK13537 223 HALIES 228 (306)
T ss_pred HHHHhc
Confidence 887543
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=373.21 Aligned_cols=222 Identities=32% Similarity=0.474 Sum_probs=192.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|+++.. ..++|++|||++.+||+++|+|+||||||||.++|+|+.+ +++|+|.++|.++.
T Consensus 3 ~l~v~nl~~~y~~~~~--------~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~~ 72 (252)
T COG1124 3 LLSVRNLSIVYGGGKF--------AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPLA 72 (252)
T ss_pred eEEEeceEEEecCCcc--------hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCcccC
Confidence 5999999999976431 1259999999999999999999999999999999999986 46899999998876
Q ss_pred Cc----cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCC
Q 003437 127 TS----YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGV 199 (820)
Q Consensus 127 ~~----~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~L 199 (820)
.. .+.+.+.+||||+ .+.|..||++.|.-+.... +.++. ++++.++|+.+||.+. ++++ |.+|
T Consensus 73 ~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~~~--~~~i~~~L~~VgL~~~~l~R~-----P~eL 142 (252)
T COG1124 73 PKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLSKS--QQRIAELLDQVGLPPSFLDRR-----PHEL 142 (252)
T ss_pred ccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC---CccHH--HHHHHHHHHHcCCCHHHHhcC-----chhc
Confidence 53 2456789999998 4899999999998887642 33333 3449999999999754 4444 5689
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||+|||||+.+|++||||||||+||+..+.+|+++|.++.+ .+.|.|+++||.+. +..+||||++|++|+++
T Consensus 143 SGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~Vm~~G~iv 221 (252)
T COG1124 143 SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAVMDNGQIV 221 (252)
T ss_pred ChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheeeeeCCeEE
Confidence 99999999999999999999999999999999999999999999986 48999999999985 88999999999999999
Q ss_pred EEcCccchhhh
Q 003437 279 YMGSPVALPAH 289 (820)
Q Consensus 279 ~~G~~~~~~~~ 289 (820)
+.++.+++...
T Consensus 222 E~~~~~~l~~~ 232 (252)
T COG1124 222 EIGPTEELLSH 232 (252)
T ss_pred EeechhhhhcC
Confidence 99999988754
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=365.97 Aligned_cols=234 Identities=24% Similarity=0.408 Sum_probs=201.3
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC---CCCceEEEECC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ---GSLEGSVRIDG 122 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~---~~~~G~I~i~G 122 (820)
..++++||++.|+. +.+|+|||+.|++++++|||||||||||||||++..+... ...+|+|.++|
T Consensus 6 ~~~~~~~l~~yYg~------------~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 6 PAIEVRDLNLYYGD------------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred ceeEecceeEEECc------------hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 45999999999964 3599999999999999999999999999999999987532 23689999999
Q ss_pred EeCCCc-----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCC
Q 003437 123 KPVTTS-----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGR 196 (820)
Q Consensus 123 ~~~~~~-----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~ 196 (820)
+++... ..|+.+|+|||.+.-|| +|++||+.|+.++.. +..++.+++|++.|+...|.+. .|++ . ...
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL-~-~sa 147 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRL-H-KSA 147 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHh-h-CCc
Confidence 998642 46888999999999999 799999999988763 3336778899999999999654 4443 2 334
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.+|||||+||++|||||+.+|+|||||||||+|||.+...|-+++.+|+ +.-|||++||.+.. +.+..|+..++..|+
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQ-AaRvSD~taFf~~G~ 225 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQ-AARVSDYTAFFYLGE 225 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHH-HHHHhHhhhhhcccE
Confidence 5799999999999999999999999999999999999999999999998 46899999999985 788999999999999
Q ss_pred EEEEcCccchhhhhhccCCCCCCCCChHHHH
Q 003437 277 LVYMGSPVALPAHLAGFGRTVPDGENSLEYL 307 (820)
Q Consensus 277 iv~~G~~~~~~~~f~~~g~~~~~~~~~ad~~ 307 (820)
+|++|+++++.. .|..+.+.||+
T Consensus 226 LvE~g~T~~iF~--------~P~~~~TedYi 248 (253)
T COG1117 226 LVEFGPTDKIFT--------NPKHKRTEDYI 248 (253)
T ss_pred EEEEcCHHhhhc--------CccHHHHHHHh
Confidence 999999988743 35555556664
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-45 Score=402.80 Aligned_cols=220 Identities=27% Similarity=0.456 Sum_probs=196.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|.+ ++.+|+|+||++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.
T Consensus 3 ~l~i~~l~~~~~~-----------~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 69 (356)
T PRK11650 3 GLKLQAVRKSYDG-----------KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVN 69 (356)
T ss_pred EEEEEeEEEEeCC-----------CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECC
Confidence 4899999999931 1349999999999999999999999999999999999885 46899999999986
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. ..++.+|||+|++.+||++||+||+.|+...+ ..++.+..++++++++.+||++..++++. +|||||||
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~Q 141 (356)
T PRK11650 70 ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKPR-----ELSGGQRQ 141 (356)
T ss_pred CCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCChh-----hCCHHHHH
Confidence 42 23567999999999999999999999987643 24566677889999999999988887765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++|||+. ++..+||++++|++|+++..|+++
T Consensus 142 RvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~ 220 (356)
T PRK11650 142 RVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPV 220 (356)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHH
Confidence 999999999999999999999999999999999999999875 999999999997 488899999999999999999998
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 221 ~~~~ 224 (356)
T PRK11650 221 EVYE 224 (356)
T ss_pred HHHh
Confidence 8743
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=399.43 Aligned_cols=219 Identities=29% Similarity=0.493 Sum_probs=196.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.
T Consensus 6 ~l~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~ 71 (351)
T PRK11432 6 FVVLKNITKRFGS------------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDVT 71 (351)
T ss_pred EEEEEeEEEEECC------------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECC
Confidence 5999999999953 248999999999999999999999999999999999985 46899999999986
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. ..++.+|||+|+..+||++||+||+.|+...+ ..++++..++++++++.+||.+..++++. .|||||||
T Consensus 72 ~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~~-----~LSgGq~Q 143 (351)
T PRK11432 72 HRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYVD-----QISGGQQQ 143 (351)
T ss_pred CCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHH
Confidence 43 23567999999999999999999999997654 24566778899999999999988777654 79999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||++||+.++.++.+.|+++.++ |+|+|++|||++. +..++|+|++|++|+++..|+++
T Consensus 144 RVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e-~~~laD~i~vm~~G~i~~~g~~~ 222 (351)
T PRK11432 144 RVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSE-AFAVSDTVIVMNKGKIMQIGSPQ 222 (351)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH-HHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999865 9999999999974 88899999999999999999998
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 223 ~~~~ 226 (351)
T PRK11432 223 ELYR 226 (351)
T ss_pred HHHh
Confidence 8743
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=400.47 Aligned_cols=219 Identities=32% Similarity=0.510 Sum_probs=197.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+|||||||||||++|+|+.+ +++|+|.++|+++.
T Consensus 4 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~ 69 (353)
T TIGR03265 4 YLSIDNIRKRFGA------------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDIT 69 (353)
T ss_pred EEEEEEEEEEeCC------------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECC
Confidence 4999999999953 248999999999999999999999999999999999885 46899999999986
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. ..++.+|||+|+..+||++||+||+.|+...+ ..++++.+++++++++.+||++..++.+. +|||||||
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~~-----~LSgGq~Q 141 (353)
T TIGR03265 70 RLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYPG-----QLSGGQQQ 141 (353)
T ss_pred CCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCChh-----hCCHHHHH
Confidence 42 23567999999999999999999999987643 24566778899999999999998887764 79999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||++||+.++.++.+.|+++.++ |.|+|++|||++ ++..+||++++|++|+++..|+++
T Consensus 142 RvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~ 220 (353)
T TIGR03265 142 RVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQ 220 (353)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999875 999999999997 588899999999999999999998
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 221 ~~~~ 224 (353)
T TIGR03265 221 EIYR 224 (353)
T ss_pred HHHh
Confidence 8754
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=379.24 Aligned_cols=218 Identities=33% Similarity=0.541 Sum_probs=190.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (235)
T cd03261 1 IELRGLTKSFGG------------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISG 66 (235)
T ss_pred CeEEEEEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 578999999853 249999999999999999999999999999999999885 468999999998753
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ..++.++||+|++.+++.+||+||+.+...... ..+.++..+++.++++.+||.+..++.++ .|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPA-----ELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCH
Confidence 2 235678999999999999999999998754321 23455556788999999999887777665 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|+++. +..+||++++|++|++++.
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~-~~~~~d~v~~l~~G~i~~~ 218 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDT-AFAIADRIAVLYDGKIVAE 218 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhcCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999999999874 8999999999984 7889999999999999999
Q ss_pred cCccchh
Q 003437 281 GSPVALP 287 (820)
Q Consensus 281 G~~~~~~ 287 (820)
|+++++.
T Consensus 219 g~~~~~~ 225 (235)
T cd03261 219 GTPEELR 225 (235)
T ss_pred cCHHHHc
Confidence 9876653
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-45 Score=378.48 Aligned_cols=220 Identities=30% Similarity=0.489 Sum_probs=197.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.++++|++|+|+.. ..+|+|+|+++++||.++|+|+||||||||+++|+|++.| .+|+|.++|.++.
T Consensus 3 ~i~~~~l~~~y~~~-----------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~~ 69 (235)
T COG1122 3 MIEAENLSFRYPGR-----------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDTS 69 (235)
T ss_pred eEEEEEEEEEcCCC-----------ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeecc
Confidence 48999999999642 3599999999999999999999999999999999999964 5799999999876
Q ss_pred ----CccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 127 ----TSYMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 127 ----~~~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
....++.+|||+|++ +++. -||.|.+.|+.... ++++++.+++++++++.+||.+.+++.+ ..||
T Consensus 70 ~~~~~~~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~LS 140 (235)
T COG1122 70 SEKSLLELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPP-----FNLS 140 (235)
T ss_pred chhhHHHhhcceEEEEECccccccc-CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCc-----cccC
Confidence 335678899999997 4554 49999999998754 4677889999999999999999887775 4799
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
|||||||+||.+|+.+|++|+|||||+|||+..+.++++.+++|.++ |+|+|++|||.+. +..+||++++|++|++++
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~-~~~~ad~v~vl~~G~i~~ 219 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL-VLEYADRVVVLDDGKILA 219 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH-HHhhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999999987 7999999999985 888999999999999999
Q ss_pred EcCccchhhh
Q 003437 280 MGSPVALPAH 289 (820)
Q Consensus 280 ~G~~~~~~~~ 289 (820)
+|+|.++.+.
T Consensus 220 ~g~p~~i~~~ 229 (235)
T COG1122 220 DGDPAEIFND 229 (235)
T ss_pred cCCHHHHhhh
Confidence 9998777543
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=396.15 Aligned_cols=225 Identities=28% Similarity=0.421 Sum_probs=198.9
Q ss_pred CCCCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEEC
Q 003437 42 MIPGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRID 121 (820)
Q Consensus 42 ~~~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~ 121 (820)
.+....|+++||+++|++ +.+|+||||+|++||+++|+||||||||||+|+|+|++. +++|+|.++
T Consensus 36 ~~~~~~i~i~nl~k~y~~------------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~ 101 (340)
T PRK13536 36 SMSTVAIDLAGVSKSYGD------------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVL 101 (340)
T ss_pred cCCceeEEEEEEEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEEC
Confidence 344456999999999953 249999999999999999999999999999999999985 468999999
Q ss_pred CEeCCCc--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 122 GKPVTTS--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 122 G~~~~~~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
|+++... ..++.+||++|++.+++.+||.||+.+....+ ..+..+..++++++++.+||.+..++.++ +|
T Consensus 102 G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~L 173 (340)
T PRK13536 102 GVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVS-----DL 173 (340)
T ss_pred CEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChh-----hC
Confidence 9987532 34567999999999999999999999876543 23444556678899999999988888876 69
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
||||||||+||+||+++|++|||||||+|||+.++..+.++|++++++|+|||++||+++ ++.++||+|++|++|++++
T Consensus 174 S~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~ 252 (340)
T PRK13536 174 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEAGRKIA 252 (340)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999888999999999998 4889999999999999999
Q ss_pred EcCccchhhh
Q 003437 280 MGSPVALPAH 289 (820)
Q Consensus 280 ~G~~~~~~~~ 289 (820)
.|+++++...
T Consensus 253 ~g~~~~l~~~ 262 (340)
T PRK13536 253 EGRPHALIDE 262 (340)
T ss_pred EcCHHHHHhh
Confidence 9999887653
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=397.85 Aligned_cols=219 Identities=28% Similarity=0.446 Sum_probs=196.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCc--eEEEECCEe
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE--GSVRIDGKP 124 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~--G~I~i~G~~ 124 (820)
.|+++||+++|++ +.+|+|+|++|++||+++|+|||||||||||++|+|+.+ +++ |+|.++|++
T Consensus 5 ~l~~~~l~~~~~~------------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~~ 70 (362)
T TIGR03258 5 GIRIDHLRVAYGA------------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADRD 70 (362)
T ss_pred EEEEEEEEEEECC------------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCEE
Confidence 4899999999953 248999999999999999999999999999999999885 457 999999998
Q ss_pred CCCc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 125 VTTS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 125 ~~~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
+... ..++.+|||+|+..+||++||+||+.|+...+ ..++.+..++++++++.+||++..++++. +|||||
T Consensus 71 ~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~-----~LSgGq 142 (362)
T TIGR03258 71 LTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLPA-----QLSGGM 142 (362)
T ss_pred CCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCChh-----hCCHHH
Confidence 8542 23567999999999999999999999987643 24566777889999999999988887765 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART--GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~--g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.++ |.|+|++|||++. +..+||+|++|++|+++..|
T Consensus 143 ~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~e-a~~l~dri~vl~~G~i~~~g 221 (362)
T TIGR03258 143 QQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDD-ALTLADKAGIMKDGRLAAHG 221 (362)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999999999876 8999999999974 78899999999999999999
Q ss_pred Cccchhh
Q 003437 282 SPVALPA 288 (820)
Q Consensus 282 ~~~~~~~ 288 (820)
+++++..
T Consensus 222 ~~~~~~~ 228 (362)
T TIGR03258 222 EPQALYD 228 (362)
T ss_pred CHHHHHh
Confidence 9988753
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-44 Score=397.38 Aligned_cols=219 Identities=28% Similarity=0.450 Sum_probs=196.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +++|+|.++|+++.
T Consensus 14 ~L~l~~l~~~~~~------------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~ 79 (375)
T PRK09452 14 LVELRGISKSFDG------------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDIT 79 (375)
T ss_pred eEEEEEEEEEECC------------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5999999999953 248999999999999999999999999999999999885 46899999999986
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. ..++.+|||+|++.+||++||.||+.|+...+ +.++.+..++++++++.+||++..++++. +|||||||
T Consensus 80 ~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p~-----~LSgGq~Q 151 (375)
T PRK09452 80 HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKPH-----QLSGGQQQ 151 (375)
T ss_pred CCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHH
Confidence 42 23567999999999999999999999987543 24556667789999999999988887764 79999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||++||..++..+.+.|+++.++ |.|+|++|||+. ++..++|+|++|++|+++..|+++
T Consensus 152 RVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~ 230 (375)
T PRK09452 152 RVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPR 230 (375)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999875 999999999997 488899999999999999999998
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 231 ~i~~ 234 (375)
T PRK09452 231 EIYE 234 (375)
T ss_pred HHHh
Confidence 8743
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-44 Score=395.25 Aligned_cols=222 Identities=26% Similarity=0.436 Sum_probs=195.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+|++|++||+++|+||||||||||||+|+|+++ +++|+|+++|+++.
T Consensus 2 ~L~i~~l~~~~~~------------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~ 67 (353)
T PRK10851 2 SIEIANIKKSFGR------------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEEeCC------------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 4899999999953 249999999999999999999999999999999999885 46899999999985
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
.. ..++.++||+|++.++|++||+||+.|+...+.. ...++++..++++++++.+||++..++++. +||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPA-----QLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHH
Confidence 42 2346799999999999999999999998654211 123456667889999999999988777764 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++.. +..+||+|++|++|++++.|++
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~e-a~~~~Dri~vl~~G~i~~~g~~ 221 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEE-AMEVADRVVVMSQGNIEQAGTP 221 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999875 8999999999974 8889999999999999999999
Q ss_pred cchhh
Q 003437 284 VALPA 288 (820)
Q Consensus 284 ~~~~~ 288 (820)
+++..
T Consensus 222 ~~i~~ 226 (353)
T PRK10851 222 DQVWR 226 (353)
T ss_pred HHHHh
Confidence 88753
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=369.04 Aligned_cols=215 Identities=31% Similarity=0.505 Sum_probs=188.6
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+++ +++|+|.++|.++..
T Consensus 1 i~~~~~~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 66 (220)
T cd03265 1 IEVENLVKKYGD------------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVR 66 (220)
T ss_pred CEEEEEEEEECC------------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCc
Confidence 578999999853 249999999999999999999999999999999999875 468999999988753
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 --SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 --~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
...++.++|++|++.+++.+||+||+.+....+ ..+.++..++++++++.+||++..++.++ .|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 138 (220)
T cd03265 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVK-----TYSGGMRR 138 (220)
T ss_pred ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHH
Confidence 123457899999999999999999999876543 23344556778999999999887777765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|+++. +..+||++++|++|+++..|+++
T Consensus 139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~-~~~~~d~i~~l~~G~i~~~~~~~ 217 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEE-AEQLCDRVAIIDHGRIIAEGTPE 217 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEeCCEEEEeCChH
Confidence 999999999999999999999999999999999999999876 8999999999984 78899999999999999998876
Q ss_pred c
Q 003437 285 A 285 (820)
Q Consensus 285 ~ 285 (820)
+
T Consensus 218 ~ 218 (220)
T cd03265 218 E 218 (220)
T ss_pred H
Confidence 5
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=359.29 Aligned_cols=221 Identities=28% Similarity=0.458 Sum_probs=198.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|..+||.|+|++ +++++|||+++++||+++|+|||||||||.+.++.|+.. +++|+|.+||.+++
T Consensus 4 ~L~a~~l~K~y~k------------r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT 69 (243)
T COG1137 4 TLVAENLAKSYKK------------RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDIT 69 (243)
T ss_pred EEEehhhhHhhCC------------eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccc
Confidence 4899999999964 359999999999999999999999999999999999986 46899999999998
Q ss_pred Ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 TSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
... .+..+||+||++..|..|||+|||....+.+.. ...+.+.+++++++|+.|+|.+.++.+-. .||||
T Consensus 70 ~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~-----sLSGG 143 (243)
T COG1137 70 KLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAY-----SLSGG 143 (243)
T ss_pred cCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCccc-----ccccc
Confidence 643 234479999999999999999999999887632 22334666778999999999999988754 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
||+|+.|||||+.+|+.++||||++|.||.+..+|.++++.|++.|..|++|-|+... ...+|||.+++++|+++++|+
T Consensus 144 ERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVRE-tL~i~dRaYIi~~G~vla~G~ 222 (243)
T COG1137 144 ERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRE-TLDICDRAYIISDGKVLAEGS 222 (243)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHH-HHhhhheEEEEecCeEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999984 788999999999999999999
Q ss_pred ccchhh
Q 003437 283 PVALPA 288 (820)
Q Consensus 283 ~~~~~~ 288 (820)
|+++.+
T Consensus 223 p~ei~~ 228 (243)
T COG1137 223 PEEIVN 228 (243)
T ss_pred HHHHhc
Confidence 998864
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=347.22 Aligned_cols=215 Identities=31% Similarity=0.467 Sum_probs=189.1
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|.+++|.++|.. .=-.++++|.+||++||+||||||||||||+|+|+..| .+|+|++||++.+.
T Consensus 2 l~L~~V~~~y~~--------------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t~ 65 (231)
T COG3840 2 LALDDVRFSYGH--------------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHTA 65 (231)
T ss_pred ccccceEEeeCc--------------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecCc
Confidence 667889999864 22457899999999999999999999999999999864 67999999999865
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ...+-++++||+.+||.++||.+|+.++..-.+ .. .++.+++++.++..+||..+.+++.+ +||||||||
T Consensus 66 ~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQR 137 (231)
T COG3840 66 SPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQR 137 (231)
T ss_pred CCcccCChhhhhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHH
Confidence 3 345668999999999999999999998764211 12 34567889999999999999888876 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
|++||+|+++-+||+||||+|+|||.-+.++..++.+++. ++.|++++||+|++ +.+++|+++++++|+|.+.|+.++
T Consensus 138 vALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~D-a~~ia~~~~fl~~Gri~~~g~~~~ 216 (231)
T COG3840 138 VALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPED-AARIADRVVFLDNGRIAAQGSTQE 216 (231)
T ss_pred HHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHHhhhceEEEeCCEEEeeccHHH
Confidence 9999999999999999999999999999999999999986 59999999999985 889999999999999999999877
Q ss_pred hh
Q 003437 286 LP 287 (820)
Q Consensus 286 ~~ 287 (820)
..
T Consensus 217 ~~ 218 (231)
T COG3840 217 LL 218 (231)
T ss_pred Hh
Confidence 64
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=385.72 Aligned_cols=219 Identities=32% Similarity=0.477 Sum_probs=193.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++ +++|+|.++|.++.
T Consensus 4 ~i~~~~l~~~~~~------------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (303)
T TIGR01288 4 AIDLVGVSKSYGD------------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPVP 69 (303)
T ss_pred EEEEEeEEEEeCC------------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECc
Confidence 5999999999953 249999999999999999999999999999999999885 46899999999875
Q ss_pred Cc--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 127 TS--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 127 ~~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
.. ..++.+||++|++.+++.+||+||+.+....+ ..+..+..++++++++.++|.+..++.++ .||||||
T Consensus 70 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~~ 141 (303)
T TIGR01288 70 SRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVA-----LLSGGMK 141 (303)
T ss_pred ccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchh-----hCCHHHH
Confidence 32 23567899999999999999999998765432 23444555678899999999988888775 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
|||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.++||++++|++|++++.|+++
T Consensus 142 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 220 (303)
T TIGR01288 142 RRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPH 220 (303)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999999999999888999999999998 478899999999999999999998
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 221 ~~~~ 224 (303)
T TIGR01288 221 ALID 224 (303)
T ss_pred HHHh
Confidence 8754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=366.30 Aligned_cols=211 Identities=37% Similarity=0.561 Sum_probs=184.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++ +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (213)
T cd03259 1 LELKGLSKTYGS------------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTG 66 (213)
T ss_pred CeeeeeEEEeCC------------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCc
Confidence 478999999853 249999999999999999999999999999999999885 468999999998753
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ..++.++|++|++.+++.+||+||+.+..... .....+..+++.++++.+||.+..++.+. .||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPH-----ELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHH
Confidence 2 23457899999999999999999998875432 13344556678999999999887777664 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|+++. +.++||++++|++|++++.|
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEE-ALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH-HHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999987 49999999999974 78899999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=367.61 Aligned_cols=209 Identities=30% Similarity=0.539 Sum_probs=182.2
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++. .+.+|+++|+++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~~----------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 69 (216)
T TIGR00960 2 IRFEQVSKAYPGG----------HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLTR 69 (216)
T ss_pred eEEEEEEEEecCC----------CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehhh
Confidence 7899999999531 1249999999999999999999999999999999999885 468999999998743
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ..++.++|++|++.+++.+||.||+.+....+ ....++..+++.++++.+||++..++.++ .|||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 141 (216)
T TIGR00960 70 LRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALPM-----QLSG 141 (216)
T ss_pred cChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCH
Confidence 1 13467899999999999999999999876543 23344556788999999999887777664 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +..+||++++|++|++
T Consensus 142 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~-~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 142 GEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINL-VETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999999998779999999999974 7788999999999974
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=393.90 Aligned_cols=219 Identities=30% Similarity=0.466 Sum_probs=195.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|.+ +.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.
T Consensus 19 ~l~l~~v~~~~~~------------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~ 84 (377)
T PRK11607 19 LLEIRNLTKSFDG------------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDLS 84 (377)
T ss_pred eEEEEeEEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5999999999853 248999999999999999999999999999999999985 46899999999885
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. ..++.+|||+|++.+||++||.||+.|+...+ ..++.+.++++.++++.+||.+..++.+. +|||||||
T Consensus 85 ~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~~-----~LSgGq~Q 156 (377)
T PRK11607 85 HVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKPH-----QLSGGQRQ 156 (377)
T ss_pred CCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHH
Confidence 42 34577999999999999999999999987643 24566777889999999999987777664 79999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||++||...+..+.+.|+++.+ .|.|+|++|||++ ++..++|++++|++|+++..|+++
T Consensus 157 RVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~ 235 (377)
T PRK11607 157 RVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPE 235 (377)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHH
Confidence 99999999999999999999999999999999999999876 4999999999997 488899999999999999999998
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 236 ~~~~ 239 (377)
T PRK11607 236 EIYE 239 (377)
T ss_pred HHHh
Confidence 8754
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=393.97 Aligned_cols=219 Identities=28% Similarity=0.459 Sum_probs=194.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 3 ~l~i~~l~~~~~~------------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~ 68 (369)
T PRK11000 3 SVTLRNVTKAYGD------------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMN 68 (369)
T ss_pred EEEEEEEEEEeCC------------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 4899999999953 248999999999999999999999999999999999985 46899999999885
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. ..++.++||+|+..+++.+||+||+.|+...+ ..+.++..++++++++.+||++..++.+. +|||||||
T Consensus 69 ~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~-----~LSgGq~Q 140 (369)
T PRK11000 69 DVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQ 140 (369)
T ss_pred CCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHH
Confidence 32 23467999999999999999999999987543 23455666789999999999988777765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++|||++ ++..+||++++|++|+++..|+++
T Consensus 141 RvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~ 219 (369)
T PRK11000 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPL 219 (369)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999865 999999999997 478899999999999999999998
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 220 ~i~~ 223 (369)
T PRK11000 220 ELYH 223 (369)
T ss_pred HHHh
Confidence 7743
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=370.44 Aligned_cols=220 Identities=27% Similarity=0.448 Sum_probs=189.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+++ +++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (239)
T cd03296 2 SIEVRNVSKRFGD------------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDAT 67 (239)
T ss_pred EEEEEeEEEEECC------------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 4899999999953 249999999999999999999999999999999999875 46899999999875
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
.. ..++.++|++|++.+++.+||+||+.+....+.. ......+..++++++++.+||.+..++.++ .||||||
T Consensus 68 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 142 (239)
T cd03296 68 DVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA-----QLSGGQR 142 (239)
T ss_pred cCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHH
Confidence 32 2245689999999999999999999987543211 001233445678899999999887777664 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
|||+||+||+.+|++|||||||+|||+.++..+.++|++++++ |+|||+++|+++. +..+||++++|++|++++.|++
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~-~~~~~d~i~~l~~G~i~~~~~~ 221 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEE-ALEVADRVVVMNKGRIEQVGTP 221 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEECCeEEEecCH
Confidence 9999999999999999999999999999999999999999875 8999999999974 7788999999999999999988
Q ss_pred cch
Q 003437 284 VAL 286 (820)
Q Consensus 284 ~~~ 286 (820)
+++
T Consensus 222 ~~~ 224 (239)
T cd03296 222 DEV 224 (239)
T ss_pred HHH
Confidence 765
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=370.36 Aligned_cols=220 Identities=32% Similarity=0.522 Sum_probs=189.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|++ +.+|+++|+++++||+++|+||||||||||+++|+|+++ +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (236)
T cd03219 1 LEVRGLTKRFGG------------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITG 66 (236)
T ss_pred CeeeeeEEEECC------------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCC
Confidence 468999999853 249999999999999999999999999999999999885 468999999998754
Q ss_pred cc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 003437 128 SY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS-------ISRDEKKKRVYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 128 ~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
.. .++.++|++|++.+++.+||+||+.+......... ....+..+++.++++.+||++..++.+.
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 142 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAG---- 142 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChh----
Confidence 21 23568999999999999999999998764321110 0234455678999999999887777664
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +..+||++++|++|+
T Consensus 143 -~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~-~~~~~d~i~~l~~G~ 220 (236)
T cd03219 143 -ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDV-VMSLADRVTVLDQGR 220 (236)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEeCCE
Confidence 699999999999999999999999999999999999999999999998789999999999984 778999999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
+++.|+++++.
T Consensus 221 i~~~~~~~~~~ 231 (236)
T cd03219 221 VIAEGTPDEVR 231 (236)
T ss_pred EEeecCHHHhc
Confidence 99999887653
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=389.43 Aligned_cols=221 Identities=31% Similarity=0.482 Sum_probs=193.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|+.+. ..+.+|+|+||+|++||+++|+||||||||||+|+|+|+++ +++|+|.++|.++..
T Consensus 2 i~i~~l~~~y~~~~--------~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~~ 71 (343)
T PRK11153 2 IELKNISKVFPQGG--------RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLTA 71 (343)
T ss_pred EEEEeEEEEeCCCC--------CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 88999999996211 12359999999999999999999999999999999999985 468999999998853
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ..++.+|||+|++.+++.+||+||+.+....+ +.+..+..+++.++++.+||++..++.+. +|||
T Consensus 72 ~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSg 143 (343)
T PRK11153 72 LSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYPA-----QLSG 143 (343)
T ss_pred CCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCH
Confidence 2 12567999999999999999999999886543 23455566789999999999887777664 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
||||||+|||+|+.+|++|||||||+|||+.++..+.++|++++++ |+|||++||+++. +.++||++++|++|++++.
T Consensus 144 Gq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~-i~~~~d~v~~l~~G~i~~~ 222 (343)
T PRK11153 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDV-VKRICDRVAVIDAGRLVEQ 222 (343)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999865 9999999999974 7889999999999999999
Q ss_pred cCccchh
Q 003437 281 GSPVALP 287 (820)
Q Consensus 281 G~~~~~~ 287 (820)
|+++++.
T Consensus 223 g~~~~~~ 229 (343)
T PRK11153 223 GTVSEVF 229 (343)
T ss_pred cCHHHHH
Confidence 9987764
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=369.04 Aligned_cols=216 Identities=29% Similarity=0.493 Sum_probs=188.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++ +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 66 (232)
T cd03218 1 LRAENLSKRYGK------------RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITK 66 (232)
T ss_pred CeEEEEEEEeCC------------EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 578999999853 249999999999999999999999999999999999885 468999999998753
Q ss_pred cc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 128 SY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 128 ~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
.. .++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+|+.+..++.+. .|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKAS-----SLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHH
Confidence 21 2356899999999999999999999875433 12344556678899999999887777664 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+++. +.++||++++|++|++++.|++
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~G~i~~~~~~ 217 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRE-TLSITDRAYIIYEGKVLAEGTP 217 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEECCeEEEEeCH
Confidence 999999999999999999999999999999999999999998889999999999974 7889999999999999999987
Q ss_pred cch
Q 003437 284 VAL 286 (820)
Q Consensus 284 ~~~ 286 (820)
+++
T Consensus 218 ~~~ 220 (232)
T cd03218 218 EEI 220 (232)
T ss_pred HHh
Confidence 665
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-43 Score=363.77 Aligned_cols=216 Identities=37% Similarity=0.541 Sum_probs=186.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++.. ..+.+|+|+|++|++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~~--------~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 70 (220)
T cd03293 1 LEVRNVSKTYGGGG--------GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG 70 (220)
T ss_pred CeEEEEEEEcCCCC--------cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc
Confidence 57899999986411 11359999999999999999999999999999999999875 468999999998753
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRV 207 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv 207 (820)
.++.++||+|++.+++.+||+||+.+....+ ..+.++..++++++++.+||.+..++.++ .||||||||+
T Consensus 71 --~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl 140 (220)
T cd03293 71 --PGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYPH-----QLSGGMRQRV 140 (220)
T ss_pred --ccCcEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHH
Confidence 3567899999999999899999999876543 23344556788999999999887777664 6999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEe--CCeEEEEcCcc
Q 003437 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLA--RGRLVYMGSPV 284 (820)
Q Consensus 208 ~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~--~G~iv~~G~~~ 284 (820)
+||++|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||+++|+++. +..+||++++|+ +|++++.++.+
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDE-AVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH-HHHhCCEEEEEECCCCEEEEEEEec
Confidence 999999999999999999999999999999999999965 58999999999974 778999999999 79999887653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-43 Score=378.60 Aligned_cols=233 Identities=27% Similarity=0.427 Sum_probs=195.6
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|+.+.. ..+.+|+|||++|++||+++|+||||||||||+|+|+|+++ +.+|+|+++|.++..
T Consensus 2 i~~~~v~~~y~~~~~-------~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~ 72 (288)
T PRK13643 2 IKFEKVNYTYQPNSP-------FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVSS 72 (288)
T ss_pred EEEEEEEEEeCCCCc-------ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECcc
Confidence 899999999963210 11359999999999999999999999999999999999885 468999999998742
Q ss_pred -------ccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 003437 128 -------SYMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRR 197 (820)
Q Consensus 128 -------~~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~ 197 (820)
...++.+|||+|++ .+++ .||.||+.|+.... +.++++.++++.++++.+||. +..++.+ +
T Consensus 73 ~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~ 143 (288)
T PRK13643 73 TSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSP-----F 143 (288)
T ss_pred ccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCc-----c
Confidence 12456789999986 5665 59999999876532 245666778899999999996 4556554 4
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.++||+|++|++|++
T Consensus 144 ~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~-~~~~~dri~~l~~G~i 222 (288)
T PRK13643 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDD-VADYADYVYLLEKGHI 222 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEECCEE
Confidence 799999999999999999999999999999999999999999999998789999999999974 7789999999999999
Q ss_pred EEEcCccchhh---hhhccCCCCCC
Q 003437 278 VYMGSPVALPA---HLAGFGRTVPD 299 (820)
Q Consensus 278 v~~G~~~~~~~---~f~~~g~~~~~ 299 (820)
++.|+++++.. .+...|+.+|.
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~p~ 247 (288)
T PRK13643 223 ISCGTPSDVFQEVDFLKAHELGVPK 247 (288)
T ss_pred EEECCHHHHHcCHHHHHHcCCCCCh
Confidence 99999988753 23455665554
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-43 Score=381.36 Aligned_cols=219 Identities=29% Similarity=0.499 Sum_probs=194.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.++++|++++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~------------~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 2 SIRVSSLTKLYGT------------QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEECC------------EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 4899999999953 249999999999999999999999999999999999875 46899999999875
Q ss_pred Cc--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 127 TS--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 127 ~~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
.. ..++.+||++|++.+++.+||.||+.+.+.++ +.+.++..++++++++.+||.+..++.++ .||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHH
Confidence 42 24567999999999999999999999887654 23445556788999999999988888775 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
|||+||+||+++|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|++++.|+++
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~ 217 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLD 217 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999965 799999999998 488999999999999999999998
Q ss_pred chhhh
Q 003437 285 ALPAH 289 (820)
Q Consensus 285 ~~~~~ 289 (820)
++...
T Consensus 218 ~~~~~ 222 (301)
T TIGR03522 218 ELSAA 222 (301)
T ss_pred HHHHh
Confidence 87553
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-43 Score=361.61 Aligned_cols=211 Identities=28% Similarity=0.500 Sum_probs=184.6
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+|++|++||+++|+||||||||||+++|+|+++ +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~ 66 (213)
T cd03301 1 VELENVTKRFGN------------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTD 66 (213)
T ss_pred CEEEeeEEEECC------------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 478999999853 249999999999999999999999999999999999875 468999999998753
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ..++.++|++|++.+++.+||+||+.+....+ ....++..++++++++.+||.+..++.++ .||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPK-----QLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChh-----hCCHHHHHH
Confidence 2 22456899999999998899999998875433 23445556788999999999887777765 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++.. +.++||++++|++|++++.|
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVE-AMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999874 8999999999974 78899999999999999875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=367.79 Aligned_cols=220 Identities=31% Similarity=0.506 Sum_probs=190.2
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|+++. ..+.+|+++|++|++||+++|+||||||||||+++|+|+++ +++|+|.++|+++..
T Consensus 2 i~~~~l~~~~~~~~--------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 71 (233)
T cd03258 2 IELKNVSKVFGDTG--------GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTL 71 (233)
T ss_pred eEEecceEEccCCC--------CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccc
Confidence 78999999985320 01259999999999999999999999999999999999985 468999999998753
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ..++.++|++|++.+++.+|++||+.+....+ .....+..+.+.++++.+||.+..++.+. .|||
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 143 (233)
T cd03258 72 LSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYPA-----QLSG 143 (233)
T ss_pred CCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcChh-----hCCH
Confidence 2 12467899999999999999999998876543 23344556678999999999887777654 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.++||++++|++|++++.
T Consensus 144 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~-~~~~~d~i~~l~~G~i~~~ 222 (233)
T cd03258 144 GQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEV-VKRICDRVAVMEKGEVVEE 222 (233)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999875 8999999999974 7889999999999999999
Q ss_pred cCccch
Q 003437 281 GSPVAL 286 (820)
Q Consensus 281 G~~~~~ 286 (820)
|+++++
T Consensus 223 ~~~~~~ 228 (233)
T cd03258 223 GTVEEV 228 (233)
T ss_pred cCHHHH
Confidence 987665
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=361.95 Aligned_cols=210 Identities=31% Similarity=0.592 Sum_probs=184.6
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|+++.|.+ +.+|+|+|+++++||+++|+||||||||||+++|+|+++ +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (210)
T cd03269 1 LEVENVTKRFGR------------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI 66 (210)
T ss_pred CEEEEEEEEECC------------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH
Confidence 578999999853 249999999999999999999999999999999999875 468999999998754
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRV 207 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv 207 (820)
..++.++|++|++.+++.+||+||+.+....+ ..+..+..+++.++++.+||++..++.+. .|||||||||
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRVE-----ELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcHh-----hCCHHHHHHH
Confidence 34567899999999999999999999876543 23344556788999999999887777664 6999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 208 ~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++.. +.++||++++|++|++++.|
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMEL-VEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH-HHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998778999999999974 77889999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-43 Score=363.31 Aligned_cols=215 Identities=31% Similarity=0.514 Sum_probs=187.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|+++. +...+|+|+|+++++||+++|+|+||||||||+++|+|+++ +++|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~~--------~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 71 (218)
T cd03266 2 ITADALTKRFRDVK--------KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVVK 71 (218)
T ss_pred eEEEEEEEecCCCC--------ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEccc
Confidence 78999999996421 11259999999999999999999999999999999999885 468999999998753
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 --SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 --~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
...++.++|++|++.+++.+||+||+.+....+ ..+..+..+++.++++.+||.+..++.++ .|||||||
T Consensus 72 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 143 (218)
T cd03266 72 EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQ 143 (218)
T ss_pred CHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhh-----hcCHHHHH
Confidence 124567899999999999999999998865543 23445566788999999999887777765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|++||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++.. +..+||++++|++|++++.|
T Consensus 144 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~-~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 144 KVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQE-VERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999999998779999999999974 78899999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-44 Score=360.95 Aligned_cols=222 Identities=31% Similarity=0.499 Sum_probs=197.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ ..+++||||++++||+++||||||||||||+|+|+|.++ |++|+|.++|++++
T Consensus 4 lL~v~~l~k~FGG------------l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it 69 (250)
T COG0411 4 LLEVRGLSKRFGG------------LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDIT 69 (250)
T ss_pred eeeeccceeecCC------------EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccC
Confidence 5889999999964 359999999999999999999999999999999999986 46899999999997
Q ss_pred Ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcC--------CC-CCCHHHHHHHHHHHHHHcCCCccccccccC
Q 003437 127 TSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRL--------PP-SISRDEKKKRVYELLDQLGLRSATHTYIGN 193 (820)
Q Consensus 127 ~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~--------~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~ 193 (820)
... .+..++--||...+|++|||.||+..++..+. +. ....++..+++.++|+.+||.+.+|+..|
T Consensus 70 ~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~- 148 (250)
T COG0411 70 GLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG- 148 (250)
T ss_pred CCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-
Confidence 532 23446788999999999999999999865331 11 11345667889999999999999999987
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 194 ~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
+||+|||||+.|||||+++|++|+||||.+||.+....++.++|+++.+ .|.||+++.||++. +..+||||++|
T Consensus 149 ----~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl 223 (250)
T COG0411 149 ----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVL 223 (250)
T ss_pred ----cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEec
Confidence 5999999999999999999999999999999999999999999999998 47999999999985 89999999999
Q ss_pred eCCeEEEEcCccchhh
Q 003437 273 ARGRLVYMGSPVALPA 288 (820)
Q Consensus 273 ~~G~iv~~G~~~~~~~ 288 (820)
+.|+++++|+|+++.+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999998864
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=375.70 Aligned_cols=224 Identities=26% Similarity=0.432 Sum_probs=190.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|+.... ..+.+|+||||+|++||+++|+||||||||||+++|+|+++ +.+|+|.++|.++.
T Consensus 2 ~l~~~~l~~~y~~~~~-------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 2 SIKIENLTHIYMEGTP-------FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEEECCCCCc-------cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 3899999999964210 12359999999999999999999999999999999999985 46899999999985
Q ss_pred Cc-----cccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCCCCCC
Q 003437 127 TS-----YMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR--SATHTYIGNEGRRG 198 (820)
Q Consensus 127 ~~-----~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~ 198 (820)
.. ..++.+|||+|++. .+...||+||+.|..... +.++++..+++.++++.+||. +..++.+ +.
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSP-----FE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCc-----cc
Confidence 31 24567899999863 233469999999875432 345666778899999999997 5566655 47
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
||||||||++||+||+.+|++|||||||+|||+.++..+.++|++++++ |+|||++||+++. +..+||++++|++|++
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~drv~~l~~G~i 223 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMED-VAKLADRIIVMNKGKC 223 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 9999999999874 7788999999999999
Q ss_pred EEEcCccchhh
Q 003437 278 VYMGSPVALPA 288 (820)
Q Consensus 278 v~~G~~~~~~~ 288 (820)
++.|+++++.+
T Consensus 224 ~~~g~~~~~~~ 234 (287)
T PRK13637 224 ELQGTPREVFK 234 (287)
T ss_pred EEECCHHHHHh
Confidence 99999988753
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=365.47 Aligned_cols=219 Identities=28% Similarity=0.431 Sum_probs=185.3
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC---CCCceEEEECCEe
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ---GSLEGSVRIDGKP 124 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~---~~~~G~I~i~G~~ 124 (820)
|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|++.+ .+.+|+|.++|++
T Consensus 1 i~~~~l~~~~~~------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 68 (227)
T cd03260 1 IELRDLNVYYGD------------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKD 68 (227)
T ss_pred CEEEEEEEEcCC------------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEE
Confidence 578999999853 2499999999999999999999999999999999999711 2468999999998
Q ss_pred CCCc-----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 125 VTTS-----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 125 ~~~~-----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
+... ..++.++|++|++.++ .+||+||+.+....+. .....+..+++.++++.+||.+..++.+. +.+|
T Consensus 69 ~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~L 142 (227)
T cd03260 69 IYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGL 142 (227)
T ss_pred hhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccC
Confidence 7531 2356789999999888 7899999998765431 11223345678899999999876665531 2479
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ .|||++||+++. +.++||++++|++|++++
T Consensus 143 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~-~~~~~d~i~~l~~G~i~~ 220 (227)
T cd03260 143 SGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQ-AARVADRTAFLLNGRLVE 220 (227)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHH-HHHhCCEEEEEeCCEEEE
Confidence 999999999999999999999999999999999999999999999877 999999999974 778999999999999999
Q ss_pred EcCccch
Q 003437 280 MGSPVAL 286 (820)
Q Consensus 280 ~G~~~~~ 286 (820)
.|+++++
T Consensus 221 ~g~~~~~ 227 (227)
T cd03260 221 FGPTEQI 227 (227)
T ss_pred ecCcccC
Confidence 9987653
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-43 Score=363.42 Aligned_cols=217 Identities=34% Similarity=0.550 Sum_probs=188.2
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|++. .+++|+|+|+++++||+++|+||||||||||+|+|+|+.+ +++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~----------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (220)
T cd03263 1 LQIRNLTKTYKKG----------TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRT 68 (220)
T ss_pred CEEEeeEEEeCCC----------CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 5789999998531 1359999999999999999999999999999999999875 468999999998753
Q ss_pred c--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 S--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 ~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
. ..++.++|++|++.+++.+||+||+.+....+ ..+..+..++++++++.+||.+..++.++ .|||||||
T Consensus 69 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 140 (220)
T cd03263 69 DRKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRAR-----TLSGGMKR 140 (220)
T ss_pred chHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChhh-----hCCHHHHH
Confidence 2 23556899999999999999999999876543 23344455678999999999887777765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|+++. +.++||++++|++|++++.|++++
T Consensus 141 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~-~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 141 KLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDE-AEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHH-HHHhcCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999976 5999999999984 778899999999999999998765
Q ss_pred h
Q 003437 286 L 286 (820)
Q Consensus 286 ~ 286 (820)
+
T Consensus 219 ~ 219 (220)
T cd03263 219 L 219 (220)
T ss_pred c
Confidence 3
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=381.85 Aligned_cols=207 Identities=29% Similarity=0.494 Sum_probs=185.0
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc--cccceEEEEccCCCCCCCCCH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS--YMKMVSSYVMQDDQLFPMLTV 149 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~--~~~~~~gyv~Q~~~l~~~lTV 149 (820)
+.+|+|+||+|++||+++|+||||||||||+|+|+|+++ +++|+|.++|.++... ..++.+||++|++.+++.+||
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 459999999999999999999999999999999999985 4689999999987532 235678999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 003437 150 FETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGL 229 (820)
Q Consensus 150 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgL 229 (820)
+||+.+.+.++ +.+..+..++++++++.+||.+..++.++ .|||||||||+||+||+.+|++|||||||+||
T Consensus 84 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 84 RENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 99999876654 23445556789999999999988888775 69999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhhh
Q 003437 230 DSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAH 289 (820)
Q Consensus 230 D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 289 (820)
|+.++..+.+.|++++++|+|||++||+++ ++.++||++++|++|++++.|+++++...
T Consensus 156 D~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 156 DPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999888999999999997 48889999999999999999999887553
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-43 Score=368.65 Aligned_cols=220 Identities=33% Similarity=0.511 Sum_probs=186.2
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|+++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~-----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 67 (241)
T cd03256 1 IEVENLSKTYPNG-----------KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINK 67 (241)
T ss_pred CEEeeEEEecCCc-----------cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccc
Confidence 4789999998531 249999999999999999999999999999999999885 468999999998753
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRL-----PPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
. ..++.++|++|++.+++.+||+||+.+...... .......+..+++.++++.+||.+..++.+.
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 143 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRAD---- 143 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcc----
Confidence 2 234678999999999999999999987542110 0011123345678899999999877766654
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +..+||++++|++|
T Consensus 144 -~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~~~~~d~v~~l~~G 221 (241)
T cd03256 144 -QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL-AREYADRIVGLKDG 221 (241)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECC
Confidence 69999999999999999999999999999999999999999999999864 8999999999985 77899999999999
Q ss_pred eEEEEcCccch
Q 003437 276 RLVYMGSPVAL 286 (820)
Q Consensus 276 ~iv~~G~~~~~ 286 (820)
++++.|+++++
T Consensus 222 ~i~~~~~~~~~ 232 (241)
T cd03256 222 RIVFDGPPAEL 232 (241)
T ss_pred EEEeecCHHHh
Confidence 99999988765
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=362.56 Aligned_cols=218 Identities=29% Similarity=0.444 Sum_probs=186.0
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|+.+. ..+.+|+++||+|++||+++|+||||||||||+|+|+|+++ +++|+|+++|+++
T Consensus 4 ~~l~~~~l~~~~~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 4 ILLQCDNLCKRYQEGS--------VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred ceEEEEeEEEEcCCCC--------cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 3599999999996321 11359999999999999999999999999999999999875 4689999999987
Q ss_pred CCcc------c-cceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 126 TTSY------M-KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 126 ~~~~------~-~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
.... . ++.++|++|++.+++.+||+||+.+..... ....++.++++.++++.+||++..++.+. .
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRPS-----E 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----h
Confidence 5421 1 256899999999999999999999875432 23344556788999999999887776654 6
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||+++. +.. +|++++|++|++
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~~~-~~~~~~l~~G~i 223 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-AKR-MSRQLEMRDGRL 223 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHh-hCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999976 58999999999975 554 589999999999
Q ss_pred EEEcCc
Q 003437 278 VYMGSP 283 (820)
Q Consensus 278 v~~G~~ 283 (820)
++.++.
T Consensus 224 ~~~~~~ 229 (233)
T PRK11629 224 TAELSL 229 (233)
T ss_pred EEEecc
Confidence 988764
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-43 Score=390.84 Aligned_cols=221 Identities=24% Similarity=0.379 Sum_probs=192.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++ +.+|+|.++|+++.
T Consensus 3 ~L~~~nls~~y~~------------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~ 68 (402)
T PRK09536 3 MIDVSDLSVEFGD------------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVE 68 (402)
T ss_pred eEEEeeEEEEECC------------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcC
Confidence 4999999999953 349999999999999999999999999999999999985 46899999999876
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
. ...++.+|||+|++.+++.+||+||+.++...+.. ......+..++++++++.+||.+..++.+. +||||
T Consensus 69 ~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~-----~LSgG 143 (402)
T PRK09536 69 ALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVT-----SLSGG 143 (402)
T ss_pred cCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChh-----hCCHH
Confidence 4 23456799999999998899999999986432110 001123456789999999999988887765 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+|||+|+++|++|||||||+|||+.++.+++++|++++++|+|||+++|+++. +.++|||+++|++|++++.|+
T Consensus 144 erQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~-~~~~adrii~l~~G~iv~~G~ 222 (402)
T PRK09536 144 ERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDL-AARYCDELVLLADGRVRAAGP 222 (402)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999999998789999999999985 888999999999999999999
Q ss_pred ccchh
Q 003437 283 PVALP 287 (820)
Q Consensus 283 ~~~~~ 287 (820)
++++.
T Consensus 223 ~~ev~ 227 (402)
T PRK09536 223 PADVL 227 (402)
T ss_pred HHHHh
Confidence 98764
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-43 Score=362.30 Aligned_cols=210 Identities=32% Similarity=0.563 Sum_probs=180.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++.. ..+.+|+|+||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~~--------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~ 70 (218)
T cd03255 1 IELKNLSKTYGGGG--------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISK 70 (218)
T ss_pred CeEeeeEEEecCCC--------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhh
Confidence 57899999995311 01359999999999999999999999999999999999885 468999999998753
Q ss_pred cc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 128 SY-------MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 128 ~~-------~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
.. .++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+||++..++.++ .||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 142 (218)
T cd03255 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYPS-----ELS 142 (218)
T ss_pred cchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcChh-----hcC
Confidence 21 2456899999999999999999999876543 12334455678999999999887777664 699
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++. +. +||++++|++|++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~G~i 218 (218)
T cd03255 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999999999999999999999987 59999999999975 55 8999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=370.06 Aligned_cols=228 Identities=29% Similarity=0.429 Sum_probs=196.7
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCEe
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGKP 124 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~~ 124 (820)
|+++||+.+|.... +..++++||||++++||++||+|.||||||||.++|.|+++.. ..+|+|.|+|++
T Consensus 2 L~v~nL~v~f~~~~--------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~ 73 (316)
T COG0444 2 LEVKNLSVSFPTDA--------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKD 73 (316)
T ss_pred ceEeeeEEEEecCC--------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcc
Confidence 78999999996532 2346999999999999999999999999999999999999621 367999999998
Q ss_pred CCCc-------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHHcCCCccccccccCC
Q 003437 125 VTTS-------YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSI-SRDEKKKRVYELLDQLGLRSATHTYIGNE 194 (820)
Q Consensus 125 ~~~~-------~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~ 194 (820)
+... .+.+.++|||||+ .|.|.+||.+.+.-....+. .. .+++..+++.++|+.+||.+... +-+.
T Consensus 74 l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~ 149 (316)
T COG0444 74 LLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPER--RLKS 149 (316)
T ss_pred cccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHH--HHhh
Confidence 7432 1235689999997 58999999999988876542 22 46677889999999999986432 2256
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
+|.+|||||||||.||.||+.+|++||+||||++||...+.+|+++|+++.+ .|.++|++|||+.. +.++||||+||+
T Consensus 150 YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDri~VMY 228 (316)
T COG0444 150 YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMY 228 (316)
T ss_pred CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceEEEEE
Confidence 7889999999999999999999999999999999999999999999999987 69999999999985 889999999999
Q ss_pred CCeEEEEcCccchhh
Q 003437 274 RGRLVYMGSPVALPA 288 (820)
Q Consensus 274 ~G~iv~~G~~~~~~~ 288 (820)
.|+||+.|+++++..
T Consensus 229 aG~iVE~g~~~~i~~ 243 (316)
T COG0444 229 AGRIVEEGPVEEIFK 243 (316)
T ss_pred CcEEEEeCCHHHHhc
Confidence 999999999987754
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=365.44 Aligned_cols=218 Identities=33% Similarity=0.551 Sum_probs=189.6
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++ +++|+|.++|.++..
T Consensus 2 l~~~~l~~~~~~------------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 67 (240)
T PRK09493 2 IEFKNVSKHFGP------------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVND 67 (240)
T ss_pred EEEEeEEEEECC------------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 789999999853 249999999999999999999999999999999999875 468999999998753
Q ss_pred c-----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 128 S-----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 128 ~-----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
. ..++.++|++|++.+++.+||+||+.+...... .....+..+++.++++.+||++..++.+. .||||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G 140 (240)
T PRK09493 68 PKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYPS-----ELSGG 140 (240)
T ss_pred CChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcChh-----hcCHH
Confidence 1 235678999999999999999999988642111 23445556778999999999877777654 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+||++|+.+|++|||||||+|||+.++..+.++|++++++|+|||++||+++. +..+||++++|++|++++.|+
T Consensus 141 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~G~i~~~g~ 219 (240)
T PRK09493 141 QQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGF-AEKVASRLIFIDKGRIAEDGD 219 (240)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEeeCC
Confidence 9999999999999999999999999999999999999999998779999999999985 778899999999999999998
Q ss_pred ccchh
Q 003437 283 PVALP 287 (820)
Q Consensus 283 ~~~~~ 287 (820)
++++.
T Consensus 220 ~~~~~ 224 (240)
T PRK09493 220 PQVLI 224 (240)
T ss_pred HHHHh
Confidence 77653
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=371.15 Aligned_cols=220 Identities=26% Similarity=0.443 Sum_probs=190.4
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|++ +.+|+|+||+|++||+++|+|||||||||||++|+|+.+ +++|+|.++|+++
T Consensus 6 ~~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 6 NLVDMRGVSFTRGN------------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred ceEEEeCeEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 35999999999853 249999999999999999999999999999999999985 4689999999987
Q ss_pred CCc------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 126 TTS------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 126 ~~~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
... ..++.++|++|++.+++.+||.||+.+...... ..+..+..+++.++++.+||.+..++.++ .|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMPS-----EL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hC
Confidence 531 124568999999999999999999988653221 12344455678899999999887777765 69
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +.++||++++|++|+++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~-~~~~~d~v~~l~~G~i~ 223 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPE-VLSIADHAYIVADKKIV 223 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhhCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999765 8999999999874 78899999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
+.|+++++.
T Consensus 224 ~~g~~~~~~ 232 (269)
T PRK11831 224 AHGSAQALQ 232 (269)
T ss_pred EeCCHHHHh
Confidence 999887653
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=385.03 Aligned_cols=206 Identities=28% Similarity=0.458 Sum_probs=185.5
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCcc---c----cceEEEEccCCCCC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY---M----KMVSSYVMQDDQLF 144 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~---~----~~~~gyv~Q~~~l~ 144 (820)
+.+|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|+++|+++.... . ++.++||+|++.++
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 459999999999999999999999999999999999985 46899999999986421 2 56799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 003437 145 PMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224 (820)
Q Consensus 145 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDE 224 (820)
|++||+||+.|..... +.++++..+++.++++.+||++..+++++ .|||||||||+|||||+.+|++|||||
T Consensus 84 ~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~-----~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 84 PHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPD-----ELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999999987653 34566777899999999999887777765 699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhh
Q 003437 225 PTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPA 288 (820)
Q Consensus 225 PtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 288 (820)
||++||+.++..+.+.|+++.++ |+|||++||+++. +..+||+|++|++|+++..|+++++..
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~e-a~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDE-AIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 99999999999999999999764 9999999999984 788999999999999999999988754
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=371.00 Aligned_cols=218 Identities=26% Similarity=0.394 Sum_probs=188.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+.. +.+|+|+|++|++||+++|+||||||||||+++|+|+++ +++|+|.++|+++.
T Consensus 4 ~l~~~~l~~~~~~~-----------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 70 (274)
T PRK13647 4 IIEVEDLHFRYKDG-----------TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVN 70 (274)
T ss_pred eEEEEEEEEEeCCC-----------CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 59999999999521 249999999999999999999999999999999999885 46899999999885
Q ss_pred Cc---cccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 TS---YMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
.. ..++.++||+|++. .++..||.||+.|..... ..++.+..+++.++++.+||.+..++.+. .||||
T Consensus 71 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgG 142 (274)
T PRK13647 71 AENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPY-----HLSYG 142 (274)
T ss_pred CCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChh-----hCCHH
Confidence 42 23456899999973 344579999999875432 24455556788999999999887777765 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+||+||+.+|++|||||||+|||+.++..+.++|++++++|.|||++||+++. +.++||++++|++|++++.|+
T Consensus 143 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~-~~~~~d~i~~l~~G~i~~~g~ 221 (274)
T PRK13647 143 QKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDL-AAEWADQVIVLKEGRVLAEGD 221 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999998779999999999974 778999999999999999999
Q ss_pred ccch
Q 003437 283 PVAL 286 (820)
Q Consensus 283 ~~~~ 286 (820)
++++
T Consensus 222 ~~~~ 225 (274)
T PRK13647 222 KSLL 225 (274)
T ss_pred HHHh
Confidence 8653
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=366.86 Aligned_cols=219 Identities=30% Similarity=0.501 Sum_probs=189.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++ +++|+|.++|+++.
T Consensus 3 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (250)
T PRK11264 3 AIEVKNLVKKFHG------------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITID 68 (250)
T ss_pred cEEEeceEEEECC------------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcc
Confidence 4999999999953 249999999999999999999999999999999999875 46899999999875
Q ss_pred Cc-----------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 003437 127 TS-----------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195 (820)
Q Consensus 127 ~~-----------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~ 195 (820)
.. ..++.++||+|++.+++.+||+||+.++..... ....++..+++.++++.+||.+..++.++
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--- 143 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYPR--- 143 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCChh---
Confidence 21 234568999999999998999999988643211 12344556778999999999877766654
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.++||++++|++|
T Consensus 144 --~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~-~~~~~d~i~~l~~G 220 (250)
T PRK11264 144 --RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSF-ARDVADRAIFMDQG 220 (250)
T ss_pred --hCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEECC
Confidence 699999999999999999999999999999999999999999999998779999999999974 77899999999999
Q ss_pred eEEEEcCccchh
Q 003437 276 RLVYMGSPVALP 287 (820)
Q Consensus 276 ~iv~~G~~~~~~ 287 (820)
++++.|+++++.
T Consensus 221 ~i~~~~~~~~~~ 232 (250)
T PRK11264 221 RIVEQGPAKALF 232 (250)
T ss_pred EEEEeCCHHHHh
Confidence 999999887653
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=365.31 Aligned_cols=217 Identities=27% Similarity=0.498 Sum_probs=187.8
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++. +.+|+++|++|++||+++|+||||||||||+++|+|+++ +++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~-----------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 67 (242)
T cd03295 1 IEFENVTKRYGGG-----------KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIRE 67 (242)
T ss_pred CEEEEEEEEeCCc-----------ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCc
Confidence 4789999998531 249999999999999999999999999999999999875 468999999998753
Q ss_pred c---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCCCCCCCChH
Q 003437 128 S---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS--ATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 128 ~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~ig~~~~~~LSGG 202 (820)
. ..++.++|++|++.+++.+||+||+.+....+ ..+.++..+++.++++.+||.+ ..++.+ +.||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G 139 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYP-----HELSGG 139 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHH
Confidence 1 23457899999999999999999999875543 2344555677899999999985 556555 469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.++||++++|++|++++.|
T Consensus 140 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~-~~~~~d~i~~l~~G~i~~~~ 218 (242)
T cd03295 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDE-AFRLADRIAIMKNGEIVQVG 218 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999999875 8999999999974 78899999999999999999
Q ss_pred Cccch
Q 003437 282 SPVAL 286 (820)
Q Consensus 282 ~~~~~ 286 (820)
+++++
T Consensus 219 ~~~~~ 223 (242)
T cd03295 219 TPDEI 223 (242)
T ss_pred CHHHH
Confidence 87665
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=355.34 Aligned_cols=221 Identities=26% Similarity=0.500 Sum_probs=206.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|++++|+++|+. +.+++|+||++++|++.+++|||||||||++|+|.|++. +++|+|.++|.+++
T Consensus 2 ~L~ie~vtK~Fg~------------k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~ 67 (300)
T COG4152 2 ALEIEGVTKSFGD------------KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLS 67 (300)
T ss_pred ceEEecchhccCc------------eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchh
Confidence 4899999999965 359999999999999999999999999999999999985 46899999999997
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
.. .+.+|||+|.+.-|+|.+||.|.|.|.++++ ++++++.+++++.+|+++++......+|. +||.|++|+
T Consensus 68 ~~-~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk-----~LSKGnqQK 138 (300)
T COG4152 68 QE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIK-----ELSKGNQQK 138 (300)
T ss_pred hh-hhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHH-----HhhhhhhHH
Confidence 54 4678999999999999999999999999987 68899999999999999999998888875 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccch
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 286 (820)
+.+..+++++|+++|||||+|||||.+.+.+-+.+.+++++|.|||+++|.++. +.++||++++|++|+.|.+|+.+++
T Consensus 139 IQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~-vEeLCD~llmL~kG~~V~~G~v~~i 217 (300)
T COG4152 139 IQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEH-VEELCDRLLMLKKGQTVLYGTVEDI 217 (300)
T ss_pred HHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHH-HHHHhhhhheecCCceEEeccHHHH
Confidence 999999999999999999999999999999999999999999999999999985 8999999999999999999999998
Q ss_pred hhhhh
Q 003437 287 PAHLA 291 (820)
Q Consensus 287 ~~~f~ 291 (820)
...|.
T Consensus 218 r~~~G 222 (300)
T COG4152 218 RRSFG 222 (300)
T ss_pred HHhcC
Confidence 87554
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=377.20 Aligned_cols=223 Identities=29% Similarity=0.416 Sum_probs=190.0
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|+.+. ...+.+|+|||++|++||+++|+|+||||||||+++|+|+++ +.+|+|+++|.++
T Consensus 20 ~~l~~~nl~~~y~~~~-------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 20 IILRVKNLYCVFDEKQ-------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred ceEEEEeEEEEeCCCC-------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 4599999999996421 012359999999999999999999999999999999999985 4689999999887
Q ss_pred CCc-------------------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 003437 126 TTS-------------------YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR 184 (820)
Q Consensus 126 ~~~-------------------~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 184 (820)
... ..++.++||+|++ .+++. ||+||+.|+.... ..+.++..+++.++++.+||+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 431 2356789999987 56764 9999998875432 235556667899999999996
Q ss_pred -ccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHH
Q 003437 185 -SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQ 263 (820)
Q Consensus 185 -~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~ 263 (820)
+..++.+ ..|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++. +.
T Consensus 167 ~~~~~~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~-~~ 240 (320)
T PRK13631 167 DSYLERSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEH-VL 240 (320)
T ss_pred hhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HH
Confidence 4555554 4799999999999999999999999999999999999999999999998789999999999974 77
Q ss_pred hhcCEEEEEeCCeEEEEcCccchh
Q 003437 264 MLLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 264 ~~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
++||++++|++|++++.|+++++.
T Consensus 241 ~~adri~vl~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 241 EVADEVIVMDKGKILKTGTPYEIF 264 (320)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHh
Confidence 889999999999999999998764
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=361.79 Aligned_cols=214 Identities=31% Similarity=0.551 Sum_probs=184.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++ +++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (222)
T cd03224 1 LEVENLNAGYGK------------SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITG 66 (222)
T ss_pred CEEeeEEeecCC------------eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCC
Confidence 578999999853 249999999999999999999999999999999999985 468999999998753
Q ss_pred cc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCChH
Q 003437 128 SY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQL-GLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 128 ~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~LSGG 202 (820)
.. .++.++|++|++.+++.+||+||+.+...... ..+..+++.++++.+ ++.+..++.+. .||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~~-----~LS~G 136 (222)
T cd03224 67 LPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLAG-----TLSGG 136 (222)
T ss_pred CCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCchh-----hCCHH
Confidence 21 24568999999999999999999998754321 223345677888888 57776666654 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|.|||++||+++. +.++||++++|++|+++..|+
T Consensus 137 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~G~i~~~~~ 215 (222)
T cd03224 137 EQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARF-ALEIADRAYVLERGRVVLEGT 215 (222)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhccEEEEeeCCeEEEeCC
Confidence 9999999999999999999999999999999999999999998788999999999974 788999999999999999998
Q ss_pred ccch
Q 003437 283 PVAL 286 (820)
Q Consensus 283 ~~~~ 286 (820)
++++
T Consensus 216 ~~~~ 219 (222)
T cd03224 216 AAEL 219 (222)
T ss_pred HHHH
Confidence 7655
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=374.82 Aligned_cols=222 Identities=27% Similarity=0.407 Sum_probs=189.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+.... ..+.+|+|||++|++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++.
T Consensus 2 ~l~~~~l~~~y~~~~~-------~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 2 DITFQKVEHRYQYKTP-------FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEEECCCCc-------ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 3899999999963210 11359999999999999999999999999999999999985 46899999999874
Q ss_pred C-------ccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 003437 127 T-------SYMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGR 196 (820)
Q Consensus 127 ~-------~~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~ 196 (820)
. ...++.+|||+|++ .+++ .||.||+.|+.... ..+.++..++++++++.+||. +..++.+.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~---- 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSPF---- 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCcc----
Confidence 2 12346789999986 4554 69999999875432 245566667899999999996 55666654
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++ |.|||++||+++. +.++||||++|++|
T Consensus 145 -~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~-~~~~~drv~~l~~G 222 (290)
T PRK13634 145 -ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMED-AARYADQIVVMHKG 222 (290)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECC
Confidence 79999999999999999999999999999999999999999999999865 9999999999984 78899999999999
Q ss_pred eEEEEcCccchh
Q 003437 276 RLVYMGSPVALP 287 (820)
Q Consensus 276 ~iv~~G~~~~~~ 287 (820)
++++.|+++++.
T Consensus 223 ~i~~~g~~~~~~ 234 (290)
T PRK13634 223 TVFLQGTPREIF 234 (290)
T ss_pred EEEEECCHHHHh
Confidence 999999988764
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=379.54 Aligned_cols=233 Identities=27% Similarity=0.413 Sum_probs=194.1
Q ss_pred ceEEEEEEEEEECccccccccc-ccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVW-ITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~-~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
..|+++||+++|..+......+ ......+|+||||+|++||+++|+|+||||||||+++|+|++. +.+|+|+++|++
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~ 84 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKD 84 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEE
Confidence 3599999999996421000000 0112469999999999999999999999999999999999985 468999999999
Q ss_pred CCCc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 003437 125 VTTS------YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEG 195 (820)
Q Consensus 125 ~~~~------~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~ 195 (820)
+... ..++.++||+|++ .++|.+||.||+.+......+ ..++++.++++.++++.+||. +..++++
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~p---- 159 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRYP---- 159 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCCc----
Confidence 8532 1346799999997 589999999999987654311 245667778899999999995 3455554
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
.+|||||||||+||+||+.+|++||+||||+|||+.++.+++++|+++.++ |.|+|++|||+.. +.++||+|++|++
T Consensus 160 -~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~-~~~~~dri~vl~~ 237 (331)
T PRK15079 160 -HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAV-VKHISDRVLVMYL 237 (331)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEEC
Confidence 579999999999999999999999999999999999999999999999875 9999999999985 7789999999999
Q ss_pred CeEEEEcCccchh
Q 003437 275 GRLVYMGSPVALP 287 (820)
Q Consensus 275 G~iv~~G~~~~~~ 287 (820)
|++++.|+++++.
T Consensus 238 G~ive~g~~~~i~ 250 (331)
T PRK15079 238 GHAVELGTYDEVY 250 (331)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999987765
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=378.48 Aligned_cols=229 Identities=25% Similarity=0.350 Sum_probs=191.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceEEEECCEe
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG--SLEGSVRIDGKP 124 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~--~~~G~I~i~G~~ 124 (820)
.|+++||++.|+.+. +...+|+||||+|++||+++|+|+||||||||+++|+|++.+. +++|+|.++|++
T Consensus 3 ~L~v~~l~~~~~~~~--------~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 3 LLNVDKLSVHFGDES--------APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred eEEEeCeEEEECCCC--------ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 489999999996421 1235999999999999999999999999999999999998532 368999999999
Q ss_pred CCCcc-------ccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 003437 125 VTTSY-------MKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195 (820)
Q Consensus 125 ~~~~~-------~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~ 195 (820)
+.... .++.++||+|++ .+.|.+||.+++........ ...+++.++++.++|+.+||.+..+. -+.+
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~--l~~~ 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASR--LDVY 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHH--HhCC
Confidence 75321 224689999998 48899999999877654331 23556667889999999999752211 1234
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+++|||||||||+||+||+.+|++||+||||+|||+.++.+++++|+++++ .|.|+|++|||++. +.++||+|++|++
T Consensus 151 p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~-~~~~adri~vm~~ 229 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLAL-VAEAAHKIIVMYA 229 (326)
T ss_pred chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999986 59999999999984 7789999999999
Q ss_pred CeEEEEcCccchhh
Q 003437 275 GRLVYMGSPVALPA 288 (820)
Q Consensus 275 G~iv~~G~~~~~~~ 288 (820)
|++++.|+++++.+
T Consensus 230 G~ive~g~~~~~~~ 243 (326)
T PRK11022 230 GQVVETGKAHDIFR 243 (326)
T ss_pred CEEEEECCHHHHhh
Confidence 99999999887753
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=376.25 Aligned_cols=222 Identities=26% Similarity=0.412 Sum_probs=189.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+++.. ....+|+|||++|++||+++|+||||||||||+|+|+|++++ ++|+|+++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~~-------~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~ 72 (305)
T PRK13651 2 QIKVKNIVKIFNKKLP-------TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEEECCCCC-------ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecc
Confidence 4899999999964210 113599999999999999999999999999999999999854 6799999987642
Q ss_pred C---------------------------ccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 003437 127 T---------------------------SYMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYEL 177 (820)
Q Consensus 127 ~---------------------------~~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~ 177 (820)
. ...++.+|||+|++ .++ ..||+||+.|+.... +.++++..+++.++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~ 148 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM---GVSKEEAKKRAAKY 148 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc---CCCHHHHHHHHHHH
Confidence 1 12356789999985 445 469999999876532 34566777889999
Q ss_pred HHHcCCC-ccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEc
Q 003437 178 LDQLGLR-SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIH 256 (820)
Q Consensus 178 l~~lgL~-~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H 256 (820)
++.+||. +..++.+ ..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++||
T Consensus 149 l~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtH 223 (305)
T PRK13651 149 IELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223 (305)
T ss_pred HHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEee
Confidence 9999996 5666665 479999999999999999999999999999999999999999999999878999999999
Q ss_pred CccHHHHhhcCEEEEEeCCeEEEEcCccchh
Q 003437 257 QPSYRIQMLLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 257 ~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
+++. +.++||||++|++|++++.|+++++.
T Consensus 224 d~~~-~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 224 DLDN-VLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred CHHH-HHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9974 77899999999999999999988764
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=357.55 Aligned_cols=207 Identities=32% Similarity=0.514 Sum_probs=181.4
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++ +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (208)
T cd03268 1 LKTNDLTKTYGK------------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQK 66 (208)
T ss_pred CEEEEEEEEECC------------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccc
Confidence 578999999853 249999999999999999999999999999999999885 468999999988753
Q ss_pred -ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 -SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 -~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
...++.++|++|++.+++.+||+||+.+....+ .. ..++++++++.+||.+..++.++ .||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKVK-----GFSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhHh-----hCCHHHHHH
Confidence 123456899999999999999999998876432 11 23568889999999887777665 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++.. +..+||++++|++|++++.|
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~-~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSE-IQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-HHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999998889999999999974 77889999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=367.23 Aligned_cols=220 Identities=30% Similarity=0.471 Sum_probs=186.1
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++ +++|+|.++|.++..
T Consensus 2 l~~~~l~~~~~~-----------~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (243)
T TIGR02315 2 LEVENLSKVYPN-----------GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITK 68 (243)
T ss_pred eEEEeeeeecCC-----------CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhh
Confidence 789999999851 1249999999999999999999999999999999999885 468999999998753
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRL-----PPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
. ..++.++|++|++.+++.+||+||+.++..... .......+..+++.++++.+||.+..++.+.
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 144 (243)
T TIGR02315 69 LRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRAD---- 144 (243)
T ss_pred CCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcc----
Confidence 1 135678999999999999999999987532100 0001123445678899999999877776654
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.++||++++|++|
T Consensus 145 -~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~-~~~~~d~v~~l~~G 222 (243)
T TIGR02315 145 -QLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDL-AKKYADRIVGLKAG 222 (243)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCeEEEEECC
Confidence 69999999999999999999999999999999999999999999999764 8999999999985 77899999999999
Q ss_pred eEEEEcCccch
Q 003437 276 RLVYMGSPVAL 286 (820)
Q Consensus 276 ~iv~~G~~~~~ 286 (820)
++++.|+++++
T Consensus 223 ~i~~~~~~~~~ 233 (243)
T TIGR02315 223 EIVFDGAPSEL 233 (243)
T ss_pred EEEecCCHHHh
Confidence 99999987664
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=371.51 Aligned_cols=220 Identities=30% Similarity=0.467 Sum_probs=191.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++.. .+.+|+|+|++|++||+++|+||||||||||+++|+|+++ +.+|+|.++|.++.
T Consensus 4 ~l~~~~l~~~~~~~~---------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (279)
T PRK13650 4 IIEVKNLTFKYKEDQ---------EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLT 72 (279)
T ss_pred eEEEEeEEEEcCCCC---------cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECC
Confidence 499999999996321 1349999999999999999999999999999999999985 46899999999985
Q ss_pred Cc---cccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 TS---YMKMVSSYVMQDD-QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
.. ..++.++||+|++ .+++..||+||+.|..... +.++++..+++.++++.+||++..++.++ .||||
T Consensus 73 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgG 144 (279)
T PRK13650 73 EENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREPA-----RLSGG 144 (279)
T ss_pred cCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCHH
Confidence 32 2356789999997 3667789999999875432 34566667789999999999987777664 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++. + ..||++++|++|+++..|
T Consensus 145 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri~~l~~G~i~~~g 222 (279)
T PRK13650 145 QKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRVLVMKNGQVESTS 222 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999875 9999999999975 5 479999999999999999
Q ss_pred Cccchh
Q 003437 282 SPVALP 287 (820)
Q Consensus 282 ~~~~~~ 287 (820)
+++++.
T Consensus 223 ~~~~~~ 228 (279)
T PRK13650 223 TPRELF 228 (279)
T ss_pred CHHHHH
Confidence 988765
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=350.93 Aligned_cols=218 Identities=30% Similarity=0.517 Sum_probs=188.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+..|+. .++|++||+++++||+++|+|+||+|||||||+|+|+.++ .+|+|.++|++++
T Consensus 3 mL~v~~l~~~YG~------------~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit 68 (237)
T COG0410 3 MLEVENLSAGYGK------------IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDIT 68 (237)
T ss_pred ceeEEeEeecccc------------eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecC
Confidence 5999999999964 3599999999999999999999999999999999999854 4799999999997
Q ss_pred Cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCCh
Q 003437 127 TS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQL-GLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 127 ~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~LSG 201 (820)
.. ..+..++||||...+||.|||+|||..++..+.. ++.....++++.+.| .|.+.++++-| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 53 2456689999999999999999999998764421 112222267777777 35667777776 5999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
||||.++|||||+.+|++|+|||||.||-|.-..+|.+.|++++++ |.||+++.++... +.+++||.++|.+|+++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~-Al~iaDr~yvle~Griv~~ 218 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARF-ALEIADRGYVLENGRIVLS 218 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHH-HHHhhCEEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999999975 7799999998875 7889999999999999999
Q ss_pred cCccchhh
Q 003437 281 GSPVALPA 288 (820)
Q Consensus 281 G~~~~~~~ 288 (820)
|+.+++..
T Consensus 219 G~~~eL~~ 226 (237)
T COG0410 219 GTAAELLA 226 (237)
T ss_pred cCHHHHhc
Confidence 99988864
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=370.90 Aligned_cols=205 Identities=31% Similarity=0.475 Sum_probs=179.8
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc---c----ccceEEEEccCCCCC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS---Y----MKMVSSYVMQDDQLF 144 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~---~----~~~~~gyv~Q~~~l~ 144 (820)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ +.+|+|.++|+++... . .++.++|++|++.++
T Consensus 37 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 114 (269)
T cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114 (269)
T ss_pred ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccC
Confidence 458999999999999999999999999999999999885 4689999999987531 1 135689999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 003437 145 PMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224 (820)
Q Consensus 145 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDE 224 (820)
+.+||+||+.+..... .....+..+++.++++.+||.+..++.++ .|||||||||+||++|+.+|++|||||
T Consensus 115 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral~~~p~illLDE 186 (269)
T cd03294 115 PHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLMDE 186 (269)
T ss_pred CCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999999999876432 12344556678999999999887777765 699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchh
Q 003437 225 PTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 225 PtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
||+|||+.++..+.+.|++++++ |+|||++||+++. +.++||++++|++|++++.|+++++.
T Consensus 187 Pt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~-~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 187 AFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDE-ALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999764 8999999999974 78899999999999999999887664
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=371.95 Aligned_cols=223 Identities=28% Similarity=0.425 Sum_probs=189.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|+++. ...+.+|+|||++|++||+++|+||||||||||+|+|+|+++ +++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~y~~~~-------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~ 72 (286)
T PRK13646 2 TIRFDNVSYTYQKGT-------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEEEEECCCC-------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 489999999996321 012359999999999999999999999999999999999885 46899999999874
Q ss_pred Cc-------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 003437 127 TS-------YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGR 196 (820)
Q Consensus 127 ~~-------~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~ 196 (820)
.. ..++.+|||+|++ .+++ .||.||+.|+.... ..+.++..+++.++++.+||. +..++.+
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (286)
T PRK13646 73 HKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSP----- 143 (286)
T ss_pred cccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc-----
Confidence 31 2456799999986 4666 49999999875432 245566677899999999996 5666655
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
+.|||||||||+||++|+.+|++|||||||+|||+.++..+.++|+++++ .|+|||++||+++. +.++||++++|++|
T Consensus 144 ~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~-~~~~~dri~~l~~G 222 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNE-VARYADEVIVMKEG 222 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEEECC
Confidence 47999999999999999999999999999999999999999999999986 59999999999974 77899999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+++++..
T Consensus 223 ~i~~~g~~~~~~~ 235 (286)
T PRK13646 223 SIVSQTSPKELFK 235 (286)
T ss_pred EEEEECCHHHHHh
Confidence 9999999877643
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=356.69 Aligned_cols=207 Identities=35% Similarity=0.566 Sum_probs=180.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ +.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~-----------~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~ 68 (214)
T TIGR02673 2 IEFHNVSKAYPG-----------GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNR 68 (214)
T ss_pred EEEEeeeEEeCC-----------CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccc
Confidence 789999999842 1249999999999999999999999999999999999875 468999999998753
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ..++.++|++|++.+++.+||.||+.+....+ ........+++.++++.+||.+..++.+. .|||
T Consensus 69 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 140 (214)
T TIGR02673 69 LRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFPE-----QLSG 140 (214)
T ss_pred CCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCH
Confidence 1 23467899999999999999999999876543 13344556788999999999877776654 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +..+||++++|++|+
T Consensus 141 G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~-~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 141 GEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSL-VDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999999999999998779999999999974 788899999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=363.40 Aligned_cols=218 Identities=25% Similarity=0.415 Sum_probs=186.9
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---CceEEEECCEe
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS---LEGSVRIDGKP 124 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~---~~G~I~i~G~~ 124 (820)
|+++||+++|++ +.+|+|+|++|++||+++|+||||||||||+|+|+|+++|.+ .+|+|.++|++
T Consensus 2 l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~ 69 (247)
T TIGR00972 2 IEIENLNLFYGE------------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQD 69 (247)
T ss_pred EEEEEEEEEECC------------eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEE
Confidence 789999999853 248999999999999999999999999999999999986421 28999999998
Q ss_pred CCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCCC
Q 003437 125 VTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR----SATHTYIGNEG 195 (820)
Q Consensus 125 ~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~~ 195 (820)
+.. ...++.++|++|++.+++ +||.||+.+....+. ..+..+..+++.++++.+||. +..++.+
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---- 142 (247)
T TIGR00972 70 IYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSA---- 142 (247)
T ss_pred ccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCc----
Confidence 753 123567899999999988 899999998765431 123455567889999999997 5555554
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
..|||||||||+|||+|+.+|++|||||||+|||+.++..+.++|++++++ .|||+++|+++. +..+||++++|++|
T Consensus 143 -~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~~-~~~~~d~i~~l~~G 219 (247)
T TIGR00972 143 -LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNMQQ-AARISDRTAFFYDG 219 (247)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCHHH-HHHhCCEEEEEECC
Confidence 479999999999999999999999999999999999999999999999774 899999999974 78899999999999
Q ss_pred eEEEEcCccchh
Q 003437 276 RLVYMGSPVALP 287 (820)
Q Consensus 276 ~iv~~G~~~~~~ 287 (820)
++++.|+++++.
T Consensus 220 ~i~~~~~~~~~~ 231 (247)
T TIGR00972 220 ELVEYGPTEQIF 231 (247)
T ss_pred EEEEeCCHHHHH
Confidence 999999887653
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=376.90 Aligned_cols=230 Identities=25% Similarity=0.390 Sum_probs=194.2
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceEEEECCEe
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-SLEGSVRIDGKP 124 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-~~~G~I~i~G~~ 124 (820)
..|+++||++.|..+. +...+|+||||+|++||+++|+|+||||||||+++|+|++++. ..+|+|.++|++
T Consensus 11 ~~L~i~~l~~~~~~~~--------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD--------GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred ceEEEeCeEEEEecCC--------CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 3599999999995321 1245999999999999999999999999999999999998642 148999999999
Q ss_pred CCCc---c---c-cceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 003437 125 VTTS---Y---M-KMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195 (820)
Q Consensus 125 ~~~~---~---~-~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~ 195 (820)
+... . . ++.++||+|++ .++|.+|+.+++.+...... ..+.++..+++.++++.+||.+..+. + +.+
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~-~~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR-M-KMY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-h-cCC
Confidence 8532 1 1 24699999998 68899999999987665432 24566667789999999999754322 2 345
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+++|||||||||+||+||+.+|++||+||||+|||+.++.+++++|++++++ |.|+|++|||++. +.++||++++|++
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~-~~~~~Dri~vm~~ 237 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGV-VAGICDKVLVMYA 237 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHH-HHHhCCEEEEEEC
Confidence 6789999999999999999999999999999999999999999999999875 9999999999984 7789999999999
Q ss_pred CeEEEEcCccchhh
Q 003437 275 GRLVYMGSPVALPA 288 (820)
Q Consensus 275 G~iv~~G~~~~~~~ 288 (820)
|++++.|+++++..
T Consensus 238 G~ive~g~~~~i~~ 251 (330)
T PRK09473 238 GRTMEYGNARDVFY 251 (330)
T ss_pred CEEEEECCHHHHHh
Confidence 99999999988753
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=356.32 Aligned_cols=208 Identities=32% Similarity=0.554 Sum_probs=181.1
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|+++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++ +++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~-----------~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 67 (214)
T cd03292 1 IEFINVTKTYPNG-----------TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSD 67 (214)
T ss_pred CEEEEEEEEeCCC-----------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence 4789999998531 249999999999999999999999999999999999875 468999999998753
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ..++.++|++|++.+++.+||+||+.+....+ ..+.++..+++.++++.+||++..++.++ +|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALPA-----ELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChh-----hcCH
Confidence 1 23457899999999999999999999876543 13445556788999999999887777664 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++.. +..+||++++|++|++
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~-~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKEL-VDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999999998779999999999974 7778999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=364.28 Aligned_cols=220 Identities=28% Similarity=0.461 Sum_probs=189.2
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ +++|+|.++|.++
T Consensus 4 ~~l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (257)
T PRK10619 4 NKLNVIDLHKRYGE------------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTI 69 (257)
T ss_pred ccEEEeeeEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 34999999999953 249999999999999999999999999999999999885 4679999999887
Q ss_pred CC----------------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-c
Q 003437 126 TT----------------SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT-H 188 (820)
Q Consensus 126 ~~----------------~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~ 188 (820)
.. ...++.++|++|++.+++.+||+||+.++..... .....+..+++.++++.+||.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 42 1234678999999999999999999987542111 134455567889999999998753 5
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCE
Q 003437 189 TYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 189 ~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 268 (820)
+.+ ..||||||||++||++|+.+|++|||||||+|||+.++..+.++|++++++|+|||++||+++. +..+||+
T Consensus 148 ~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~-~~~~~d~ 221 (257)
T PRK10619 148 KYP-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF-ARHVSSH 221 (257)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCE
Confidence 544 4799999999999999999999999999999999999999999999998789999999999974 7788999
Q ss_pred EEEEeCCeEEEEcCccchh
Q 003437 269 IIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 269 v~lL~~G~iv~~G~~~~~~ 287 (820)
+++|++|++++.|+++++.
T Consensus 222 i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 222 VIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred EEEEECCEEEEeCCHHHhh
Confidence 9999999999999887653
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=359.51 Aligned_cols=217 Identities=34% Similarity=0.533 Sum_probs=187.9
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|++ +.+|+|+|++|++||+++|+||||||||||+++|+|+.+ +++|+|.++|.++..
T Consensus 2 l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~~ 67 (236)
T TIGR03864 2 LEVAGLSFAYGA------------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLRR 67 (236)
T ss_pred EEEEeeEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccc
Confidence 789999999853 249999999999999999999999999999999999885 468999999998753
Q ss_pred c--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 S--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 ~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
. ..++.++|++|++.+++.+||+||+.+....+ ..+..+..+++.++++.+||.+..++.++ .|||||||
T Consensus 68 ~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~q 139 (236)
T TIGR03864 68 APRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVR-----ELNGGHRR 139 (236)
T ss_pred CChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHH
Confidence 2 22346899999998888899999998875443 23344456678999999999887777765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
|++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|.|||+++|+++. +. .||++++|++|++++.|+++
T Consensus 140 rl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~ 217 (236)
T TIGR03864 140 RVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAA 217 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHH
Confidence 99999999999999999999999999999999999999985 58999999999985 55 49999999999999999887
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 218 ~~~~ 221 (236)
T TIGR03864 218 ELRG 221 (236)
T ss_pred HHHH
Confidence 6643
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=356.16 Aligned_cols=204 Identities=31% Similarity=0.496 Sum_probs=175.2
Q ss_pred EEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc
Q 003437 49 EFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS 128 (820)
Q Consensus 49 ~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~ 128 (820)
+++||+++|++. +.+|+|+||++++||+++|+|||||||||||++|+|+++ +++|+|.++|.++...
T Consensus 1 ~~~~l~~~~~~~-----------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~ 67 (205)
T cd03226 1 RIENISFSYKKG-----------TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAK 67 (205)
T ss_pred CcccEEEEeCCc-----------CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhH
Confidence 367899988531 249999999999999999999999999999999999885 4689999999987543
Q ss_pred cccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 003437 129 YMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRV 207 (820)
Q Consensus 129 ~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv 207 (820)
..++.++|++|++. .+..+||+||+.+..... . ...+++.++++.+||.+..++.+. .||||||||+
T Consensus 68 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~-----~--~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv 135 (205)
T cd03226 68 ERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL-----D--AGNEQAETVLKDLDLYALKERHPL-----SLSGGQKQRL 135 (205)
T ss_pred HhhcceEEEecChhhhhhhccHHHHHhhhhhhc-----C--ccHHHHHHHHHHcCCchhcCCCch-----hCCHHHHHHH
Confidence 44567899999974 234579999998865422 1 113568899999999987777765 6999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 208 ~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.++||++++|++|+++
T Consensus 136 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 136 AIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEF-LAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999999999999998789999999999974 77899999999999875
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-42 Score=361.43 Aligned_cols=223 Identities=26% Similarity=0.343 Sum_probs=185.7
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+|++|++||+++|+||||||||||+|+|+|+....+++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~ 68 (243)
T TIGR01978 1 LKIKDLHVSVED------------KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE 68 (243)
T ss_pred CeEeeEEEEECC------------EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCC
Confidence 578999999953 24999999999999999999999999999999999985223578999999998753
Q ss_pred c---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC----CCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCC
Q 003437 128 S---Y-MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP----SISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRRG 198 (820)
Q Consensus 128 ~---~-~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~----~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~ 198 (820)
. . .+..++|++|++.+++.+|++|++.+........ ..+..+..+++.++++.+||. +..++.++ ..
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~ 144 (243)
T TIGR01978 69 LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EG 144 (243)
T ss_pred CCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cC
Confidence 2 1 2334799999999999999999998865432110 112334456789999999997 45565543 14
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhh-cCEEEEEeCCeE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQML-LDRIIVLARGRL 277 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~lL~~G~i 277 (820)
|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++|.|||++||+++. +..+ ||++++|++|++
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~-~~~~~~d~i~~l~~G~i 223 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL-LNYIKPDYVHVLLDGRI 223 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHH-HHhhcCCeEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999998789999999999974 6777 899999999999
Q ss_pred EEEcCccchh
Q 003437 278 VYMGSPVALP 287 (820)
Q Consensus 278 v~~G~~~~~~ 287 (820)
++.|+++++.
T Consensus 224 ~~~g~~~~~~ 233 (243)
T TIGR01978 224 VKSGDVELAK 233 (243)
T ss_pred EEecCHHHhc
Confidence 9999886443
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=362.40 Aligned_cols=219 Identities=26% Similarity=0.472 Sum_probs=189.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++ +++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~------------~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 3 TLTAKNLAKAYKG------------RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred eEEEeCcEEEeCC------------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 4899999999853 249999999999999999999999999999999999875 46899999999875
Q ss_pred Cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 TS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
.. ..++.++|++|++.+++.+||.||+.+...... ..+.++...+++++++.+||.+..++.++ .||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMGQ-----SLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcchh-----hCCHH
Confidence 32 134568999999999998999999987653321 12344556778999999999877666654 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|+++. +..+||++++|++|++++.|+
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~d~v~~l~~G~i~~~~~ 220 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRE-TLAVCERAYIVSQGHLIAHGT 220 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHH-HHHhcCEEEEEeCCeEEeeCC
Confidence 9999999999999999999999999999999999999999998789999999999974 788999999999999999998
Q ss_pred ccchh
Q 003437 283 PVALP 287 (820)
Q Consensus 283 ~~~~~ 287 (820)
++++.
T Consensus 221 ~~~~~ 225 (241)
T PRK10895 221 PTEIL 225 (241)
T ss_pred HHHHh
Confidence 87653
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=361.54 Aligned_cols=216 Identities=27% Similarity=0.427 Sum_probs=186.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+. +.+|+++|++|++||+++|+||||||||||+++|+|+++ +++|+|.++|+++.
T Consensus 5 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 70 (237)
T PRK11614 5 MLSFDKVSAHYGK------------IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDIT 70 (237)
T ss_pred EEEEEeEEEeeCC------------ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEecC
Confidence 5999999999853 349999999999999999999999999999999999885 46899999999875
Q ss_pred Cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCCh
Q 003437 127 TS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQL-GLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 127 ~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~LSG 201 (820)
.. ..++.++|++|++.+++.+||.||+.+..... ...+..+.++++++.+ ++.+..++.+ ..|||
T Consensus 71 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~ 140 (237)
T PRK11614 71 DWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRA-----GTMSG 140 (237)
T ss_pred CCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCch-----hhCCH
Confidence 42 13456899999999999999999998864321 1223345677788888 5766666554 46999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.++||++++|++|++++.|
T Consensus 141 G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~G~i~~~~ 219 (237)
T PRK11614 141 GEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQ-ALKLADRGYVLENGHVVLED 219 (237)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHH-HHhhCCEEEEEeCCEEEeeC
Confidence 99999999999999999999999999999999999999999998889999999999874 78899999999999999999
Q ss_pred Cccchh
Q 003437 282 SPVALP 287 (820)
Q Consensus 282 ~~~~~~ 287 (820)
+++++.
T Consensus 220 ~~~~~~ 225 (237)
T PRK11614 220 TGDALL 225 (237)
T ss_pred CHHHHh
Confidence 987764
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=357.49 Aligned_cols=222 Identities=42% Similarity=0.684 Sum_probs=186.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCceEEEECCEeC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ-GSLEGSVRIDGKPV 125 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~-~~~~G~I~i~G~~~ 125 (820)
.+.++||++.|++.. ..+.+|+|+|+++++||+++|+||||||||||+|+|+|++++ .+++|+|.++|+++
T Consensus 3 ~~~~~~~~~~~~~~~--------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 3 VLPWWDVGLKAKNWN--------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred cceeecceeeeecCc--------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 378999999986421 124699999999999999999999999999999999998751 14689999999988
Q ss_pred CCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCCCCCCCChHHH
Q 003437 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYE-LLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
.....++.++|++|++.+++.+||+||+.+......+.........+++++ +++.+++.+..++.++ .||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVK-----GISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccccc-----CcCHHHH
Confidence 654456779999999999999999999998765432211222233345555 8999999877666654 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|||+||++|+.+|++|||||||+|||+.++..+.+.|+++.++|.|+|+++|++..++.++||++++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999998779999999999854588899999999999999865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=370.16 Aligned_cols=222 Identities=28% Similarity=0.439 Sum_probs=189.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|++... ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++.
T Consensus 2 ~i~~~~l~~~~~~~~~-------~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13641 2 SIKFENVDYIYSPGTP-------MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHIT 72 (287)
T ss_pred EEEEEEEEEEcCCCCC-------ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 4899999999963210 01359999999999999999999999999999999999885 46899999999874
Q ss_pred C-------ccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 003437 127 T-------SYMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGR 196 (820)
Q Consensus 127 ~-------~~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~ 196 (820)
. ...++.++|++|++ .++ .+||.||+.+..... ...+++..++++++++.+||+ +..++.++
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~---- 144 (287)
T PRK13641 73 PETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPF---- 144 (287)
T ss_pred cccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcc----
Confidence 2 12345789999997 355 579999998875432 234556667899999999997 56677665
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.++||++++|++|+
T Consensus 145 -~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~-~~~~~d~v~~l~~G~ 222 (287)
T PRK13641 145 -ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDD-VAEYADDVLVLEHGK 222 (287)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999999998789999999999984 788999999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
+++.|+++++.
T Consensus 223 i~~~g~~~~~~ 233 (287)
T PRK13641 223 LIKHASPKEIF 233 (287)
T ss_pred EEEeCCHHHHh
Confidence 99999987764
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=355.24 Aligned_cols=209 Identities=32% Similarity=0.533 Sum_probs=182.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|.+ +.+|+|+||++++| +++|+||||||||||+++|+|+++ +++|+|.++|+++..
T Consensus 1 i~~~~~~~~~~~------------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 65 (211)
T cd03264 1 LQLENLTKRYGK------------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLK 65 (211)
T ss_pred CEEEEEEEEECC------------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCcccc
Confidence 578999999853 24999999999999 999999999999999999999885 468999999988753
Q ss_pred c--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 S--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 ~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
. ..++.++|++|++.+++.+||.||+.+....+ ..++++..++++++++.+||.+..++.++ .|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 137 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIG-----SLSGGMRR 137 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCchh-----hCCHHHHH
Confidence 2 23567899999999999999999999876543 13344456678999999999887777664 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|+++. +.+++|++++|++|++++.|
T Consensus 138 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~-~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVED-VESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHH-HHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999986 5999999999974 77889999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-42 Score=374.55 Aligned_cols=231 Identities=23% Similarity=0.326 Sum_probs=194.0
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|..+....+ ......+|+||||+|++||+++|+|+||||||||+++|+|++. +.+|+|.++|+++
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~--~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l 79 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFK--PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDL 79 (327)
T ss_pred ceEEEeeeEEEEcCCCCccc--cCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 35999999999964211000 0012469999999999999999999999999999999999985 4689999999998
Q ss_pred CCc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 003437 126 TTS------YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGR 196 (820)
Q Consensus 126 ~~~------~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~ 196 (820)
... ..++.++||+|++ .+.|.+||.+++.+...... ...+++..+++.++++.+||.+ ..++++
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~p----- 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRYP----- 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCCC-----
Confidence 542 2356799999998 58999999999987655431 2455666788999999999963 455554
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
++|||||||||+||+||+.+|++||+||||++||..++.+|+++|+++.++ |.|+|++|||++. +.++||+|++|++|
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~-~~~~adrv~vm~~G 231 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSV-VEHIADEVMVMYLG 231 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999999874 9999999999984 77899999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+++++..
T Consensus 232 ~ive~g~~~~~~~ 244 (327)
T PRK11308 232 RCVEKGTKEQIFN 244 (327)
T ss_pred EEEEECCHHHHhc
Confidence 9999999887754
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=362.03 Aligned_cols=212 Identities=29% Similarity=0.465 Sum_probs=184.9
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|++ +.+|+|+|++|++||+++|+|||||||||||++|+|+++ +++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 67 (255)
T PRK11248 2 LQISHLYADYGG------------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEG 67 (255)
T ss_pred EEEEEEEEEeCC------------eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCC
Confidence 789999999853 249999999999999999999999999999999999885 468999999998753
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRV 207 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv 207 (820)
....++|++|++.+++.+||.||+.+....+ .....+..+++.++++.+||.+..++.+. .|||||||||
T Consensus 68 --~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrl 137 (255)
T PRK11248 68 --PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-----QLSGGQRQRV 137 (255)
T ss_pred --CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCChh-----hCCHHHHHHH
Confidence 2345799999999999999999998875432 23445556788999999999877776654 6999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEe--CCeEEEEcCcc
Q 003437 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLA--RGRLVYMGSPV 284 (820)
Q Consensus 208 ~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~--~G~iv~~G~~~ 284 (820)
+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|.|||++||+++. +..+||++++|+ +|+++..++.+
T Consensus 138 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~-~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 138 GIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEE-AVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999999999999999999999999999965 58999999999984 788999999998 59999887653
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-42 Score=355.63 Aligned_cols=209 Identities=28% Similarity=0.465 Sum_probs=182.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|.. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++ +++|+|.++|.++..
T Consensus 2 l~~~~l~~~~~~-----------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 68 (222)
T PRK10908 2 IRFEHVSKAYLG-----------GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDITR 68 (222)
T ss_pred EEEEeeEEEecC-----------CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 789999999832 1249999999999999999999999999999999999885 468999999998753
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ..++.++|++|++.+++.+||+||+.+....+ ..+.++..+++.++++.+||.+..++.+. .|||
T Consensus 69 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 140 (222)
T PRK10908 69 LKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFPI-----QLSG 140 (222)
T ss_pred CChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCch-----hCCH
Confidence 1 13567899999998888899999999875443 23444555678899999999887776654 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +..+||++++|++|+++
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 141 GEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGL-ISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEc
Confidence 99999999999999999999999999999999999999999998779999999999985 77889999999999985
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=369.10 Aligned_cols=220 Identities=27% Similarity=0.473 Sum_probs=189.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|+.+ +.+|+|+|++|++||+++|+||||||||||+++|+|+++ +.+|+|.++|+++.
T Consensus 5 ~l~~~~l~~~~~~~-----------~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~~ 71 (283)
T PRK13636 5 ILKVEELNYNYSDG-----------THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPID 71 (283)
T ss_pred eEEEEeEEEEeCCC-----------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 59999999999521 349999999999999999999999999999999999885 46899999999874
Q ss_pred C-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 127 T-----SYMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 127 ~-----~~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
. ...++.+||++|++. .+...||+||+.+..... +.+.++..++++++++.+||.+..++.+. .||
T Consensus 72 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS 143 (283)
T PRK13636 72 YSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPTH-----CLS 143 (283)
T ss_pred CCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCcc-----cCC
Confidence 1 124567899999973 233469999998865432 23555666789999999999887777664 699
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
||||||++||++|+.+|++|||||||+|||+.++..+.++|++++++ |+|||+++|+++. +..+||++++|++|++++
T Consensus 144 ~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~-~~~~~dri~~l~~G~i~~ 222 (283)
T PRK13636 144 FGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI-VPLYCDNVFVMKEGRVIL 222 (283)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999875 9999999999985 777899999999999999
Q ss_pred EcCccchhh
Q 003437 280 MGSPVALPA 288 (820)
Q Consensus 280 ~G~~~~~~~ 288 (820)
.|+++++..
T Consensus 223 ~g~~~~~~~ 231 (283)
T PRK13636 223 QGNPKEVFA 231 (283)
T ss_pred eCCHHHHhc
Confidence 999887654
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=360.68 Aligned_cols=217 Identities=26% Similarity=0.449 Sum_probs=187.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (242)
T PRK11124 2 SIQLNGINCFYGA------------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFD 67 (242)
T ss_pred EEEEEeeEEEECC------------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecc
Confidence 4899999999953 249999999999999999999999999999999999875 46899999999863
Q ss_pred C---------ccccceEEEEccCCCCCCCCCHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 003437 127 T---------SYMKMVSSYVMQDDQLFPMLTVFETFMFA-AEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 127 ~---------~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
. ...++.++|++|++.+++.+||.||+.+. .... +....+..+++.++++.+||++..++.+.
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---- 140 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFPL---- 140 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh----
Confidence 1 12345789999999999999999999753 2221 12344456678999999999887777664
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++.. +.++||++++|++|+
T Consensus 141 -~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~~~~~d~i~~l~~g~ 218 (242)
T PRK11124 141 -HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV-ARKTASRVVYMENGH 218 (242)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCEEEEEECCE
Confidence 699999999999999999999999999999999999999999999998779999999999984 778899999999999
Q ss_pred EEEEcCccch
Q 003437 277 LVYMGSPVAL 286 (820)
Q Consensus 277 iv~~G~~~~~ 286 (820)
+++.|+++++
T Consensus 219 i~~~~~~~~~ 228 (242)
T PRK11124 219 IVEQGDASCF 228 (242)
T ss_pred EEEeCCHHHh
Confidence 9999987653
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=363.27 Aligned_cols=218 Identities=22% Similarity=0.387 Sum_probs=186.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|++++. +++|+|.++|+
T Consensus 12 ~l~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~ 79 (258)
T PRK14268 12 QIKVENLNLWYGE------------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGE 79 (258)
T ss_pred eEEEeeeEEEeCC------------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCE
Confidence 5999999999853 24999999999999999999999999999999999998542 36899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR----SATHTYIGNE 194 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~ 194 (820)
++.. ...++.++|++|++.+++ +||+||+.+....+ ..+.++..+++.++++.+|+. +..++.+
T Consensus 80 ~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--- 152 (258)
T PRK14268 80 DIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPA--- 152 (258)
T ss_pred EcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCCh---
Confidence 8742 123567899999998888 89999999875432 234444556788999999984 3344444
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++.. +.++||++++|++
T Consensus 153 --~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~-~~~~~d~i~~l~~ 228 (258)
T PRK14268 153 --LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQ-AARISDYTGFFLM 228 (258)
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHH-HHHhCCEEEEEEC
Confidence 47999999999999999999999999999999999999999999999965 7999999999974 7789999999999
Q ss_pred CeEEEEcCccchh
Q 003437 275 GRLVYMGSPVALP 287 (820)
Q Consensus 275 G~iv~~G~~~~~~ 287 (820)
|++++.|+++++.
T Consensus 229 G~i~~~~~~~~~~ 241 (258)
T PRK14268 229 GELIEFGQTRQIF 241 (258)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999887663
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=375.70 Aligned_cols=230 Identities=23% Similarity=0.296 Sum_probs=188.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CCCceEEEECCEe
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ--GSLEGSVRIDGKP 124 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~--~~~~G~I~i~G~~ 124 (820)
.|+++||++.|..+. ....+|+||||+|++||+++|+|+||||||||+++|+|++++ .+++|+|.++|++
T Consensus 3 ~L~v~~l~~~y~~~~--------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 3 LLDIRNLTIEFKTSD--------GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred eEEEeeeEEEEeCCC--------CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 489999999995321 124599999999999999999999999999999999999853 2468999999998
Q ss_pred CCCcc-------ccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHHHcCCCcccccccc
Q 003437 125 VTTSY-------MKMVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPS---ISRDEKKKRVYELLDQLGLRSATHTYIG 192 (820)
Q Consensus 125 ~~~~~-------~~~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig 192 (820)
+.... .++.++||+|++. +.|.+||.+++.+......... ....+..+++.++|+.+||.+..+. -
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--~ 152 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA--M 152 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH--H
Confidence 75321 1346899999975 6888999999986533211000 1123445688999999999753211 1
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEE
Q 003437 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 193 ~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
+..+.+|||||||||+||+||+.+|++|||||||+|||+.++.+++++|+++.++ |.|||++|||++. +.++||+|++
T Consensus 153 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~-v~~~~dri~v 231 (330)
T PRK15093 153 RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQM-LSQWADKINV 231 (330)
T ss_pred hCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhCCEEEE
Confidence 2334589999999999999999999999999999999999999999999999874 9999999999985 7889999999
Q ss_pred EeCCeEEEEcCccchh
Q 003437 272 LARGRLVYMGSPVALP 287 (820)
Q Consensus 272 L~~G~iv~~G~~~~~~ 287 (820)
|++|+|++.|+++++.
T Consensus 232 m~~G~ive~g~~~~i~ 247 (330)
T PRK15093 232 LYCGQTVETAPSKELV 247 (330)
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999987764
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=355.00 Aligned_cols=211 Identities=30% Similarity=0.498 Sum_probs=179.7
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|+++. ..+.+|+++|+++++||+++|+|||||||||||++|+|+++ +.+|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~~--------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 71 (221)
T TIGR02211 2 LKCENLGKRYQEGK--------LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLSK 71 (221)
T ss_pred EEEEeeeEEccCCC--------cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhh
Confidence 78999999995321 11359999999999999999999999999999999999875 468999999998753
Q ss_pred cc------cc-ceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 128 SY------MK-MVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 128 ~~------~~-~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
.. .+ +.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||++..++.++ .||
T Consensus 72 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 143 (221)
T TIGR02211 72 LSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRPS-----ELS 143 (221)
T ss_pred cCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCC
Confidence 21 12 56899999999999999999999865432 12334445678899999999887777664 699
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +. .+|++++|++|+++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~~-~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 144 GGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL-AK-KLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-Hh-hcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999999999999864 8999999999974 54 48999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=361.63 Aligned_cols=221 Identities=24% Similarity=0.405 Sum_probs=187.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|++++. +++|+|.++|+
T Consensus 4 ~l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~ 71 (253)
T PRK14267 4 AIETVNLRVYYGS------------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGR 71 (253)
T ss_pred eEEEEeEEEEeCC------------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCE
Confidence 4899999999953 24999999999999999999999999999999999998653 35899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYIGNE 194 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig~~ 194 (820)
++.. ...++.++|++|++.+++.+||.||+.+....+. ...+.++..+++.++++.+||.+ ..++.
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 146 (253)
T PRK14267 72 NIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDRLNDY---- 146 (253)
T ss_pred EccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhhhccC----
Confidence 8751 1235678999999999999999999998754321 01134445567889999999853 23333
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +..+||++++|++
T Consensus 147 -~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~~~~~d~i~~l~~ 223 (253)
T PRK14267 147 -PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQ-AARVSDYVAFLYL 223 (253)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHH-HHhhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999975 6999999999974 7889999999999
Q ss_pred CeEEEEcCccchh
Q 003437 275 GRLVYMGSPVALP 287 (820)
Q Consensus 275 G~iv~~G~~~~~~ 287 (820)
|++++.|+++++.
T Consensus 224 G~i~~~~~~~~~~ 236 (253)
T PRK14267 224 GKLIEVGPTRKVF 236 (253)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999987664
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=360.81 Aligned_cols=221 Identities=24% Similarity=0.375 Sum_probs=187.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|++.+. +++|+|.++|.
T Consensus 3 ~l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 3 KIEIRDLKVSFGQ------------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred eEEEEeeEEEECC------------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 4899999999853 24999999999999999999999999999999999998542 46899999999
Q ss_pred eCCC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCCCC
Q 003437 124 PVTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYIGNEGR 196 (820)
Q Consensus 124 ~~~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig~~~~ 196 (820)
++.. ...++.++|++|++.+++.+||.||+.+....+.. ....++..+++.++++.+||.+ ..++.+
T Consensus 71 ~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~----- 144 (250)
T PRK14247 71 DIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPA----- 144 (250)
T ss_pred ECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCc-----
Confidence 8753 23456789999999888899999999987543211 1133455677899999999964 234443
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |+|+|+++|+++. +.++||++++|++|+
T Consensus 145 ~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~~~~~d~i~~l~~G~ 222 (250)
T PRK14247 145 GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQ-AARISDYVAFLYKGQ 222 (250)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhcCEEEEEECCe
Confidence 57999999999999999999999999999999999999999999999965 8999999999974 778899999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
+++.|+++++.
T Consensus 223 i~~~g~~~~~~ 233 (250)
T PRK14247 223 IVEWGPTREVF 233 (250)
T ss_pred EEEECCHHHHH
Confidence 99999987764
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=362.04 Aligned_cols=221 Identities=24% Similarity=0.428 Sum_probs=187.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|++ +.+|+++|+++++||+++|+||||||||||+++|+|+.+ +++|+|.++|.++.
T Consensus 5 ~l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (255)
T PRK11300 5 LLSVSGLMMRFGG------------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHIE 70 (255)
T ss_pred eEEEeeEEEEECC------------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEECC
Confidence 5999999999853 249999999999999999999999999999999999875 46899999999875
Q ss_pred Ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC----------CCC--CHHHHHHHHHHHHHHcCCCcccccc
Q 003437 127 TSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP----------PSI--SRDEKKKRVYELLDQLGLRSATHTY 190 (820)
Q Consensus 127 ~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~~~ 190 (820)
... .+..++|++|++.+++.+||+||+.++...... ... ...+..+++.++++.+||.+..++.
T Consensus 71 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 150 (255)
T PRK11300 71 GLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ 150 (255)
T ss_pred CCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC
Confidence 321 234578999999999999999999986431100 000 1123345788899999998877777
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEE
Q 003437 191 IGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRI 269 (820)
Q Consensus 191 ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 269 (820)
++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +.++||++
T Consensus 151 ~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~-~~~~~d~i 224 (255)
T PRK11300 151 AG-----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKL-VMGISDRI 224 (255)
T ss_pred hh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-HHHhCCEE
Confidence 65 69999999999999999999999999999999999999999999999875 8999999999984 77899999
Q ss_pred EEEeCCeEEEEcCccchh
Q 003437 270 IVLARGRLVYMGSPVALP 287 (820)
Q Consensus 270 ~lL~~G~iv~~G~~~~~~ 287 (820)
++|++|++++.|+++++.
T Consensus 225 ~~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 225 YVVNQGTPLANGTPEEIR 242 (255)
T ss_pred EEEECCeEEecCCHHHHh
Confidence 999999999999887653
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=367.01 Aligned_cols=220 Identities=28% Similarity=0.427 Sum_probs=190.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|... .+.+|+|+|++|++||+++|+||||||||||+++|+|+++ +.+|+|.++|+++.
T Consensus 5 ~l~~~~l~~~~~~~----------~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i~ 72 (279)
T PRK13635 5 IIRVEHISFRYPDA----------ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLS 72 (279)
T ss_pred eEEEEEEEEEeCCC----------CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECC
Confidence 59999999999531 2359999999999999999999999999999999999985 46899999999886
Q ss_pred Cc---cccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 TS---YMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
.. ..++.++|++|++. +++..||.||+.+..... ..+.++..+++.++++.+||.+..++.++ .||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G 144 (279)
T PRK13635 73 EETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPH-----RLSGG 144 (279)
T ss_pred cCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCHH
Confidence 42 23567899999973 666789999999875432 23455666789999999999988777765 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|||||+||++|+.+|++|||||||+|||+.++..++++|++++++ |+|||++||+++. +. .||++++|++|++++.|
T Consensus 145 ~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~G~i~~~g 222 (279)
T PRK13635 145 QKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNKGEILEEG 222 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999875 8999999999985 55 59999999999999999
Q ss_pred Cccchhh
Q 003437 282 SPVALPA 288 (820)
Q Consensus 282 ~~~~~~~ 288 (820)
+++++..
T Consensus 223 ~~~~~~~ 229 (279)
T PRK13635 223 TPEEIFK 229 (279)
T ss_pred CHHHHhc
Confidence 9877643
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=353.89 Aligned_cols=208 Identities=33% Similarity=0.539 Sum_probs=180.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+++||++++||+++|+||||||||||+|+|+|+++ +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (213)
T cd03262 1 IEIKNLHKSFGD------------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTD 66 (213)
T ss_pred CEEEEEEEEECC------------eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCc
Confidence 478999999853 249999999999999999999999999999999999885 468999999998742
Q ss_pred -----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 128 -----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 128 -----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
...++.++|++|++.+++.+||+||+.+...... ....++..+++.++++.+||++..++.+. .||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYPA-----QLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCcc-----ccCHH
Confidence 1235678999999999999999999988643211 23344556778999999999887777664 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.++||++++|++|++
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~-~~~~~d~i~~l~~g~i 213 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGF-AREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999999999998889999999999974 7889999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=361.77 Aligned_cols=219 Identities=23% Similarity=0.357 Sum_probs=185.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|++++. +++|+|.++|+
T Consensus 7 ~l~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 74 (254)
T PRK14273 7 IIETENLNLFYTD------------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGK 74 (254)
T ss_pred eEEEeeeEEEeCC------------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCE
Confidence 5999999999853 24999999999999999999999999999999999998643 35899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR----SATHTYIGNE 194 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~ 194 (820)
++.. ...++.++|++|++.+++ +||+||+.+...... .....+..+++.++++.+++. +..++.+
T Consensus 75 ~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--- 148 (254)
T PRK14273 75 NIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNA--- 148 (254)
T ss_pred ecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCc---
Confidence 8742 124567899999988885 899999998754321 123344567788999999984 3345544
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+.|||||||||+|||+|+.+|++|||||||+|||+.++..++++|+++++ +.|||+++|+++. +.++||++++|++
T Consensus 149 --~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~~-~~~~~d~i~~l~~ 224 (254)
T PRK14273 149 --LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQQ-AGRISDRTAFFLN 224 (254)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhCCEEEEEEC
Confidence 57999999999999999999999999999999999999999999999964 7999999999984 7789999999999
Q ss_pred CeEEEEcCccchh
Q 003437 275 GRLVYMGSPVALP 287 (820)
Q Consensus 275 G~iv~~G~~~~~~ 287 (820)
|+++..|+++++.
T Consensus 225 G~i~~~g~~~~~~ 237 (254)
T PRK14273 225 GCIEEESSTDELF 237 (254)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999987764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=358.57 Aligned_cols=220 Identities=29% Similarity=0.434 Sum_probs=187.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|++ +.+|+|+||++++||+++|+|||||||||||++|+|+++ +.+|+|.++|.++.
T Consensus 2 ~i~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 2 ILYLEGLSVSFDG------------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLT 67 (242)
T ss_pred eEEEEeeEEEcCC------------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecC
Confidence 4899999999853 249999999999999999999999999999999999875 46899999999875
Q ss_pred Ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 003437 127 TSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP--P---SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 127 ~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
... .++.++|++|++.+++.+||+||+.+....... . ....++..++++++++.+|+.+..++.++
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG----- 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChh-----
Confidence 321 234689999999999999999999886432100 0 01223445678999999999887777665
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.++||++++|++|++
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~-~~~~~d~i~~l~~g~~ 220 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEF-VRSIADKVTVLHQGSV 220 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHH-HHHhCCEEEEEECCeE
Confidence 6999999999999999999999999999999999999999999999976 7899999999984 7889999999999999
Q ss_pred EEEcCccchh
Q 003437 278 VYMGSPVALP 287 (820)
Q Consensus 278 v~~G~~~~~~ 287 (820)
++.|+++++.
T Consensus 221 ~~~~~~~~~~ 230 (242)
T TIGR03411 221 LAEGSLDQVQ 230 (242)
T ss_pred EeeCCHHHHh
Confidence 9999877653
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=360.92 Aligned_cols=218 Identities=28% Similarity=0.449 Sum_probs=187.9
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|++. +++|+|.++|+++..
T Consensus 1 i~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 66 (252)
T TIGR03005 1 VRFSDVTKRFGI------------LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYH 66 (252)
T ss_pred CEEEEEEEEeCC------------eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 578999999853 249999999999999999999999999999999999885 468999999998742
Q ss_pred c----------------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 003437 128 S----------------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYI 191 (820)
Q Consensus 128 ~----------------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~i 191 (820)
. ..++.++|++|++.+++..||.||+.++.... ......+..+++.++++.+|+.+..++.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 144 (252)
T TIGR03005 67 MPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMP 144 (252)
T ss_pred cccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcCh
Confidence 1 23567899999999999999999998864321 12344455667899999999987776665
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEE
Q 003437 192 GNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRII 270 (820)
Q Consensus 192 g~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 270 (820)
+.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|++||++.. +..+||+++
T Consensus 145 -----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~-~~~~~d~i~ 218 (252)
T TIGR03005 145 -----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGF-AREFADRVC 218 (252)
T ss_pred -----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH-HHHhcCEEE
Confidence 469999999999999999999999999999999999999999999999875 9999999999974 778899999
Q ss_pred EEeCCeEEEEcCccchh
Q 003437 271 VLARGRLVYMGSPVALP 287 (820)
Q Consensus 271 lL~~G~iv~~G~~~~~~ 287 (820)
+|++|++++.|+++++.
T Consensus 219 ~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 219 FFDKGRIVEQGKPDEIF 235 (252)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999877653
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=380.63 Aligned_cols=230 Identities=28% Similarity=0.430 Sum_probs=195.0
Q ss_pred eEEEEEEEEEECcccccc------c-----c-cccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCC
Q 003437 47 GLEFKNLSYSIMKKQKKD------G-----V-WITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSL 114 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~------~-----~-~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~ 114 (820)
.|+++||++.|+....+. + . ...+...+|+|+||+|++||+++|+||||||||||||+|+|+++ ++
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~ 81 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PT 81 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CC
Confidence 499999999997642100 0 0 01122348999999999999999999999999999999999985 46
Q ss_pred ceEEEECCEeCCCcc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 003437 115 EGSVRIDGKPVTTSY-------MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187 (820)
Q Consensus 115 ~G~I~i~G~~~~~~~-------~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 187 (820)
+|+|+++|+++.... .++.++||+|++.+++.+||+||+.+....+ ..+.++..+++.++++.+||.+..
T Consensus 82 sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~ 158 (400)
T PRK10070 82 RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYA 158 (400)
T ss_pred CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhh
Confidence 899999999975321 1356899999999999999999999987643 234555667899999999998877
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhc
Q 003437 188 HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLL 266 (820)
Q Consensus 188 ~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~ 266 (820)
++++. .|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||+++. +.++|
T Consensus 159 ~~~~~-----~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~-~~~~~ 232 (400)
T PRK10070 159 HSYPD-----ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDE-AMRIG 232 (400)
T ss_pred hcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHH-HHHhC
Confidence 77664 6999999999999999999999999999999999999999999999976 58999999999974 78899
Q ss_pred CEEEEEeCCeEEEEcCccchh
Q 003437 267 DRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 267 D~v~lL~~G~iv~~G~~~~~~ 287 (820)
|++++|++|+++..|+++++.
T Consensus 233 Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 233 DRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CEEEEEECCEEEecCCHHHHH
Confidence 999999999999999987764
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=365.41 Aligned_cols=217 Identities=24% Similarity=0.390 Sum_probs=186.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+|++|++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~ 67 (271)
T PRK13638 2 LATSDLWFRYQD------------EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDY 67 (271)
T ss_pred eEEEEEEEEcCC------------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEccc
Confidence 889999999853 249999999999999999999999999999999999885 468999999998741
Q ss_pred c-----cccceEEEEccCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 128 S-----YMKMVSSYVMQDDQL-FPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~-----~~~~~~gyv~Q~~~l-~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ..++.++||+|++.+ +...|+.||+.+..... +...++..++++++++.+||.+..++.++ .|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 139 (271)
T PRK13638 68 SKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPIQ-----CLSH 139 (271)
T ss_pred ccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCch-----hCCH
Confidence 1 234578999999752 34458999998865432 23444556678899999999887777654 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|||||++||++|+.+|++|||||||+|||+.++..+.++|++++++|.|||+++|+++. +..+||++++|++|++++.|
T Consensus 140 G~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~-~~~~~d~i~~l~~G~i~~~g 218 (271)
T PRK13638 140 GQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDL-IYEISDAVYVLRQGQILTHG 218 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999998779999999999974 77899999999999999999
Q ss_pred Cccchh
Q 003437 282 SPVALP 287 (820)
Q Consensus 282 ~~~~~~ 287 (820)
+++++.
T Consensus 219 ~~~~~~ 224 (271)
T PRK13638 219 APGEVF 224 (271)
T ss_pred CHHHHh
Confidence 887654
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=355.07 Aligned_cols=216 Identities=32% Similarity=0.464 Sum_probs=178.9
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|.++. ....+|+|+|+++++||+++|+|||||||||||++|+|+++ +.+|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 71 (228)
T cd03257 2 LEVKNLSVSFPTGG--------GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLLK 71 (228)
T ss_pred eEEEeeeEeccCCC--------cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccc
Confidence 78999999985321 01259999999999999999999999999999999999875 468999999998753
Q ss_pred c------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHH-HHHHHHHcCCC-ccccccccCCCCC
Q 003437 128 S------YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKR-VYELLDQLGLR-SATHTYIGNEGRR 197 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~ig~~~~~ 197 (820)
. ..++.++|++|++ .+++.+||+||+.+....... ....+..+. +.++++.++|. +..++.++
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----- 144 (228)
T cd03257 72 LSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK--LSKKEARKEAVLLLLVGVGLPEEVLNRYPH----- 144 (228)
T ss_pred cchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHCCCChhHhhCCch-----
Confidence 1 2356789999998 467789999999887544311 112222222 36889999995 45666554
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +..+||++++|++|+
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~G~ 223 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGV-VAKIADRVAVMYAGK 223 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCeEEEEeCCE
Confidence 69999999999999999999999999999999999999999999999875 8999999999974 777899999999999
Q ss_pred EEEEc
Q 003437 277 LVYMG 281 (820)
Q Consensus 277 iv~~G 281 (820)
++..|
T Consensus 224 i~~~g 228 (228)
T cd03257 224 IVEEG 228 (228)
T ss_pred EEecC
Confidence 98754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=362.24 Aligned_cols=218 Identities=33% Similarity=0.470 Sum_probs=187.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++ +++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~------------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 2 MLEARNLSVRLGG------------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred eEEEEeEEEEeCC------------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 4899999999953 249999999999999999999999999999999999875 46899999999875
Q ss_pred Cc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 127 TS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
.. ..++.++|++|++.+++.+||+||+.+..... ....++..++++++++.+||.+..++.++ .|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYP-----QLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHH
Confidence 31 23456899999998888899999998864321 11223345678899999999887777765 699999
Q ss_pred HHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 204 RRRVSIGIDII------HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA-RTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 204 rqRv~ia~aL~------~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
||||+||++|+ .+|++|||||||+|||+.++..+.+.|++++ ++|+|||++||++.. +..+||++++|++|+
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~G~ 218 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNL-AARYADRIVLLHQGR 218 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhcCEEEEEECCE
Confidence 99999999999 5999999999999999999999999999998 579999999999974 778999999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
+++.|+++++.
T Consensus 219 i~~~~~~~~~~ 229 (258)
T PRK13548 219 LVADGTPAEVL 229 (258)
T ss_pred EEeeCCHHHHh
Confidence 99999876653
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=365.33 Aligned_cols=217 Identities=29% Similarity=0.422 Sum_probs=188.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++. +.+|+|+||+|++||+++|+||||||||||+|+|+|+++ +++|+|.++|.++..
T Consensus 2 l~~~~l~~~~~~~-----------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 68 (274)
T PRK13644 2 IRLENVSYSYPDG-----------TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTGD 68 (274)
T ss_pred EEEEEEEEEcCCC-----------CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECCc
Confidence 7899999998521 249999999999999999999999999999999999875 468999999998753
Q ss_pred ----ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 128 ----SYMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 128 ----~~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
...++.++|++|++. .+...||.||+.+..... ..+..+..++++++++.+||++..++.++ .||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G 140 (274)
T PRK13644 69 FSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSPK-----TLSGG 140 (274)
T ss_pred cccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCcc-----cCCHH
Confidence 123567899999975 355679999998875432 23555666789999999999887777664 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. + ..||++++|++|++++.|+
T Consensus 141 ~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~-~-~~~d~v~~l~~G~i~~~g~ 218 (274)
T PRK13644 141 QGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-L-HDADRIIVMDRGKIVLEGE 218 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-hhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999998789999999999985 5 4699999999999999999
Q ss_pred ccchh
Q 003437 283 PVALP 287 (820)
Q Consensus 283 ~~~~~ 287 (820)
++++.
T Consensus 219 ~~~~~ 223 (274)
T PRK13644 219 PENVL 223 (274)
T ss_pred HHHHh
Confidence 87764
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=359.26 Aligned_cols=225 Identities=25% Similarity=0.401 Sum_probs=185.9
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--C-CCCceEEEEC
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIA--Q-GSLEGSVRID 121 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~--~-~~~~G~I~i~ 121 (820)
++.|+++||+++|++ +.+|+|+|++|++||+++|+||||||||||||+|+|+.. + .+++|+|.++
T Consensus 4 ~~~l~~~~l~~~~~~------------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 4 PPKMEARGLSFFYGD------------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred CcEEEEeeeEEEECC------------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 345999999999953 249999999999999999999999999999999999863 1 2468999999
Q ss_pred CEeCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 003437 122 GKPVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 122 G~~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
|+++.. ...++.++|++|++.+++. ||+||+.+....+. ....++..++++++++.+||.+...... +..+
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESA 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCcC-cHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCc
Confidence 998753 1235678999999988884 99999998754331 1123344567889999999854221111 2234
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
+.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.++||++++|++|+
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~-~~~~~d~v~~l~~G~ 225 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQQ-AARVSDVTAFFYMGK 225 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHH-HHHhCCEEEEEECCE
Confidence 57999999999999999999999999999999999999999999999954 7999999999974 778999999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
++..|+++++.
T Consensus 226 i~~~g~~~~~~ 236 (253)
T PRK14242 226 LIEVGPTEQIF 236 (253)
T ss_pred EEEeCCHHHHH
Confidence 99999877653
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=364.65 Aligned_cols=219 Identities=31% Similarity=0.460 Sum_probs=189.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++. +.+|+|+||+|++||+++|+|+||||||||+|+|+|+++ +++|+|.++|+++.
T Consensus 3 ~l~~~~l~~~~~~~-----------~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 3 LIETRDLCYSYSGS-----------KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred eEEEEEEEEEeCCC-----------CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 48999999999531 249999999999999999999999999999999999875 46899999999875
Q ss_pred C---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 T---SYMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
. ...++.++||+|++. .+...||.||+.+..... ..+.++..++++++++.+||.+..++.+. .||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVPH-----HLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCcc-----cCCHH
Confidence 3 124466899999973 233579999998765432 24455566788999999999887777764 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.++||++++|++|++++.|
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~~~~~drv~~l~~G~i~~~g 220 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL-VPEMADYIYVMDKGRIVAYG 220 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEEEC
Confidence 999999999999999999999999999999999999999999875 8999999999984 77899999999999999999
Q ss_pred Cccchh
Q 003437 282 SPVALP 287 (820)
Q Consensus 282 ~~~~~~ 287 (820)
+++++.
T Consensus 221 ~~~~~~ 226 (277)
T PRK13652 221 TVEEIF 226 (277)
T ss_pred CHHHHh
Confidence 988775
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=363.06 Aligned_cols=222 Identities=29% Similarity=0.496 Sum_probs=188.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceEEEECCEeC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-SLEGSVRIDGKPV 125 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-~~~G~I~i~G~~~ 125 (820)
.|+++||+++|++ +.+|+|+||++.+||+++|+||||||||||+++|+|++++. +.+|+|.++|.++
T Consensus 4 ~l~~~nl~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~ 71 (262)
T PRK09984 4 IIRVEKLAKTFNQ------------HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTV 71 (262)
T ss_pred EEEEeeEEEEeCC------------eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEec
Confidence 5999999999853 34999999999999999999999999999999999998653 2469999999987
Q ss_pred CCc--------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 003437 126 TTS--------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-----PSISRDEKKKRVYELLDQLGLRSATHTYIG 192 (820)
Q Consensus 126 ~~~--------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-----~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig 192 (820)
... ..++.++|++|++.+++.+||.||+.+......+ .....++.+++++++++.+||.+..++.++
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 151 (262)
T PRK09984 72 QREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVS 151 (262)
T ss_pred ccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcc
Confidence 421 2245689999999999999999999876421100 001123445678999999999877777665
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEE
Q 003437 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 193 ~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||++.. +..+||++++
T Consensus 152 -----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~-~~~~~d~i~~ 225 (262)
T PRK09984 152 -----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDY-ALRYCERIVA 225 (262)
T ss_pred -----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEE
Confidence 6999999999999999999999999999999999999999999999986 48999999999974 7789999999
Q ss_pred EeCCeEEEEcCccch
Q 003437 272 LARGRLVYMGSPVAL 286 (820)
Q Consensus 272 L~~G~iv~~G~~~~~ 286 (820)
|++|++++.|+++++
T Consensus 226 l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 226 LRQGHVFYDGSSQQF 240 (262)
T ss_pred EECCEEEEeCCHHHh
Confidence 999999999987653
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=364.27 Aligned_cols=222 Identities=29% Similarity=0.436 Sum_probs=187.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++... ..+.+|+|+|++|++||+++|+||||||||||+++|+|+++ +++|+|.++|+++.
T Consensus 2 ~l~~~~l~~~~~~~~~-------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 72 (280)
T PRK13649 2 GINLQNVSYTYQAGTP-------FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLIT 72 (280)
T ss_pred eEEEEEEEEEcCCCCc-------cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 4899999999964210 01359999999999999999999999999999999999885 46899999999875
Q ss_pred C-------ccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 003437 127 T-------SYMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGR 196 (820)
Q Consensus 127 ~-------~~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~ 196 (820)
. ...++.++|++|++ .+++ .||+||+.+..... ..+.++..++++++++.+||.+ ..++.++
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 144 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNPF---- 144 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcc----
Confidence 3 12346689999996 4565 69999998875432 2344555667889999999973 5566554
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +..+||++++|++|+
T Consensus 145 -~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~-~~~~~d~i~~l~~G~ 222 (280)
T PRK13649 145 -ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDD-VANYADFVYVLEKGK 222 (280)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHH-HHHhCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999999998779999999999974 778999999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
+++.|+++++.
T Consensus 223 i~~~g~~~~~~ 233 (280)
T PRK13649 223 LVLSGKPKDIF 233 (280)
T ss_pred EEEeCCHHHHh
Confidence 99999987764
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=360.23 Aligned_cols=208 Identities=24% Similarity=0.412 Sum_probs=182.6
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ +.+|+|+|++|++||+++|+||||||||||+|+|+|+++ +++|+|.++|.++
T Consensus 11 ~~l~i~~l~~~~~~------------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 11 TPLLLNAVSKRYGE------------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred CcEEEEEEEEEECC------------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 45999999999953 249999999999999999999999999999999999885 4689999999876
Q ss_pred CCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
. ..++.++|++|++.+++.+||+||+.+... . ...+++.++++.+||.+..++.+. .|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~--~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-------G--QWRDAALQALAAVGLADRANEWPA-----ALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-------c--hHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHH
Confidence 4 245678999999999998999999987521 0 123568889999999887776654 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+||++|+.+|++|||||||+|||+.++..+.+.|+++.+ .|.|||++||+++. +..+||++++|++|++++.|+.+
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~-~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSE-AVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999999999999999965 58999999999974 77889999999999999988754
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=357.80 Aligned_cols=223 Identities=25% Similarity=0.382 Sum_probs=184.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC---CCCCCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI---AQGSLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~---~~~~~~G~I~i~G~ 123 (820)
.|+++|+++.|+. +.+|+|+|+++++||+++|+||||||||||+|+|+|+. ++.+++|+|.++|+
T Consensus 3 ~l~~~~~~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14245 3 KIDARDVNFWYGD------------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGR 70 (250)
T ss_pred EEEEEEEEEEECC------------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCE
Confidence 5999999999853 24999999999999999999999999999999999973 22235899999999
Q ss_pred eCCCc-----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 124 PVTTS-----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 124 ~~~~~-----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
++... ..++.++|++|++.+++ .||.||+.+....+. ....+...+.++++++.+||.+...... +..+..
T Consensus 71 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 146 (250)
T PRK14245 71 NIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFA 146 (250)
T ss_pred ecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCccc
Confidence 87531 23557899999998887 599999988754431 1122334567889999999865321111 123457
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. +++|||+++|+++. +.++||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~-~~~~~d~v~~l~~G~~~ 224 (250)
T PRK14245 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQ-AARVSDKTAFFYMGEMV 224 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHH-HHhhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999995 47999999999984 77899999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
+.|+++++.
T Consensus 225 ~~~~~~~~~ 233 (250)
T PRK14245 225 EYDDTKKIF 233 (250)
T ss_pred EECCHHHHh
Confidence 999988774
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=352.12 Aligned_cols=207 Identities=34% Similarity=0.511 Sum_probs=176.3
Q ss_pred EEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc
Q 003437 49 EFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS 128 (820)
Q Consensus 49 ~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~ 128 (820)
+++||+++|++. .+.+|+|+||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++...
T Consensus 1 ~~~~l~~~~~~~----------~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~ 68 (211)
T cd03225 1 ELKNLSFSYPDG----------ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKL 68 (211)
T ss_pred CceeEEEecCCC----------CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccC
Confidence 368999988531 1359999999999999999999999999999999999885 4689999999987532
Q ss_pred ---cccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 129 ---YMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 129 ---~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
..++.++|++|++. .++.+||+||+.+..... .....+..++++++++.+||.+..++.++ .||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~ 140 (211)
T cd03225 69 SLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSPF-----TLSGGQK 140 (211)
T ss_pred CHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHH
Confidence 23567899999974 366789999998865432 12344455678899999999877776664 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +..+||++++|++|+
T Consensus 141 qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l~~G~ 211 (211)
T cd03225 141 QRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDL-LLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999998779999999999974 778899999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=359.47 Aligned_cols=231 Identities=28% Similarity=0.435 Sum_probs=203.8
Q ss_pred eEEEEEEEEEECccccc------cccc------ccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCC
Q 003437 47 GLEFKNLSYSIMKKQKK------DGVW------ITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSL 114 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~------~~~~------~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~ 114 (820)
.|+++||++-|+++..+ .|.. ..+-..-++|+|++++.||+..|||-||||||||+++|.++.. |+
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt 81 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PT 81 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CC
Confidence 49999999999764321 1111 1122346899999999999999999999999999999999985 46
Q ss_pred ceEEEECCEeCCCc-------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 003437 115 EGSVRIDGKPVTTS-------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187 (820)
Q Consensus 115 ~G~I~i~G~~~~~~-------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 187 (820)
.|+|+++|.++... ..++.+++|||+..|+|+.||.||..|+.+++ +++++++++++.++|+.+||+...
T Consensus 82 ~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~ 158 (386)
T COG4175 82 RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYA 158 (386)
T ss_pred CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhh
Confidence 89999999998542 24567899999999999999999999999886 688999999999999999999988
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhc
Q 003437 188 HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLL 266 (820)
Q Consensus 188 ~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~ 266 (820)
++++. +|||||||||.|||||+.+|+|||+|||+|+|||--+.++.+.|.+|.++ ++|||++|||.+ ++.++.
T Consensus 159 ~~yp~-----eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG 232 (386)
T COG4175 159 DKYPN-----ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIG 232 (386)
T ss_pred hcCcc-----cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhcc
Confidence 88765 79999999999999999999999999999999999999999999999764 999999999998 588999
Q ss_pred CEEEEEeCCeEEEEcCccchhh
Q 003437 267 DRIIVLARGRLVYMGSPVALPA 288 (820)
Q Consensus 267 D~v~lL~~G~iv~~G~~~~~~~ 288 (820)
|||.+|++|+||..|+|++++.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHc
Confidence 9999999999999999999874
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=376.97 Aligned_cols=229 Identities=27% Similarity=0.391 Sum_probs=194.6
Q ss_pred EEEEEEEEEECccccc------ccc------cccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCc
Q 003437 48 LEFKNLSYSIMKKQKK------DGV------WITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE 115 (820)
Q Consensus 48 L~~~nls~~~~~~~~~------~~~------~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~ 115 (820)
|+++||.+-|+.+..+ .|. ...+...+|+|+||+|++||+++|+||||||||||+|+|+|+++ +++
T Consensus 1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~ 78 (382)
T TIGR03415 1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSR 78 (382)
T ss_pred CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCC
Confidence 5788999988754211 111 11234568999999999999999999999999999999999985 468
Q ss_pred eEEEECCE----eCCCc---c----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 003437 116 GSVRIDGK----PVTTS---Y----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR 184 (820)
Q Consensus 116 G~I~i~G~----~~~~~---~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 184 (820)
|+|+++|+ ++... . .++.++||+|++.++|.+||+||+.++...+ +.++.+.++++.++++.+||+
T Consensus 79 G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~ 155 (382)
T TIGR03415 79 GSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLA 155 (382)
T ss_pred cEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCc
Confidence 99999997 33211 1 1256899999999999999999999986543 245666778899999999999
Q ss_pred ccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHH
Q 003437 185 SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQ 263 (820)
Q Consensus 185 ~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~ 263 (820)
+..++.++ +|||||||||+|||+|+.+|+||||||||+|||+.++.++.+.|+++.++ |+|||++|||++. +.
T Consensus 156 ~~~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e-~~ 229 (382)
T TIGR03415 156 QWADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDE-AL 229 (382)
T ss_pred hhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH
Confidence 88877765 69999999999999999999999999999999999999999999999875 9999999999984 78
Q ss_pred hhcCEEEEEeCCeEEEEcCccchh
Q 003437 264 MLLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 264 ~~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
++||++++|++|+++..|+++++.
T Consensus 230 ~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 230 KIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred HhCCEEEEEECCEEEEecCHHHHh
Confidence 899999999999999999998775
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=360.72 Aligned_cols=221 Identities=24% Similarity=0.379 Sum_probs=187.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++ +++|+|.++|+++.
T Consensus 2 ~l~~~~l~~~~~~------------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 2 TLRTENLTVGYGT------------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEEeEEEEECC------------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 4899999999853 249999999999999999999999999999999999875 46899999999864
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
. ...++.++|++|+..+++.+||.||+.++...... .....++..++++++++.+||.+..++.++ .||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLT-----DLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcc-----cCCHH
Confidence 3 12345689999999888889999999875321000 011123345678899999999887777664 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.++||++++|++|+++..|+
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~-~~~~~d~i~~l~~G~i~~~~~ 221 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQ-ASRYCDHLVVLANGHVMAQGT 221 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH-HHHhcCEEEEEECCeEEEEcC
Confidence 9999999999999999999999999999999999999999998779999999999984 788999999999999999998
Q ss_pred ccchh
Q 003437 283 PVALP 287 (820)
Q Consensus 283 ~~~~~ 287 (820)
++++.
T Consensus 222 ~~~~~ 226 (255)
T PRK11231 222 PEEVM 226 (255)
T ss_pred HHHhc
Confidence 77653
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=359.84 Aligned_cols=226 Identities=23% Similarity=0.374 Sum_probs=186.8
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC---CCCceEEEEC
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ---GSLEGSVRID 121 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~---~~~~G~I~i~ 121 (820)
...|+++||++.|++ +.+|+|+|++|++||+++|+|||||||||||++|+|+.++ .+++|+|+++
T Consensus 17 ~~~l~~~nl~~~~~~------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~ 84 (267)
T PRK14235 17 EIKMRARDVSVFYGE------------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLD 84 (267)
T ss_pred CceEEEEeEEEEECC------------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEEC
Confidence 346999999999953 2499999999999999999999999999999999999854 2478999999
Q ss_pred CEeCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 003437 122 GKPVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 122 G~~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
|+++.. ...++.++|++|++.+++. ||.||+.+....+. ...+..+..+++.++++.+||.+...... +..+
T Consensus 85 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 161 (267)
T PRK14235 85 GEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHG-LARSKAELDEIVETSLRKAGLWEEVKDRL-HEPG 161 (267)
T ss_pred CEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCchhhhHHh-hCCc
Confidence 998752 1235678999999988885 99999998764331 01123344567899999999964211111 1223
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
+.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|+++. +..+||++++|++|+
T Consensus 162 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~-~~~~~d~v~~l~~G~ 239 (267)
T PRK14235 162 TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQ-AARVSQRTAFFHLGN 239 (267)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHH-HHhhCCEEEEEECCE
Confidence 57999999999999999999999999999999999999999999999975 6899999999984 778999999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
++..|+++++.
T Consensus 240 i~~~g~~~~~~ 250 (267)
T PRK14235 240 LVEVGDTEKMF 250 (267)
T ss_pred EEEeCCHHHHH
Confidence 99999887663
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=394.15 Aligned_cols=223 Identities=26% Similarity=0.395 Sum_probs=193.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|++++.+++|+|.++|.++.
T Consensus 5 ~l~~~nl~~~~~~------------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 72 (506)
T PRK13549 5 LLEMKNITKTFGG------------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ 72 (506)
T ss_pred eEEEeeeEEEeCC------------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 5999999999953 2499999999999999999999999999999999999865346899999999885
Q ss_pred Ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 TSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
... .++.++||+|++.+++.+||+||+.++...+.....+.++..++++++++.+||.+..++.++ +||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 147 (506)
T PRK13549 73 ASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG-----NLGLG 147 (506)
T ss_pred CCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchh-----hCCHH
Confidence 321 245689999999999999999999987543211112344456678999999999887777765 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+||++|+.+|++|||||||+|||+.++..+.++|++++++|.|||++||+++. +..+||++++|++|++++.|+
T Consensus 148 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~-~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 148 QQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNE-VKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHH-HHHhcCEEEEEECCEEeeecc
Confidence 9999999999999999999999999999999999999999998789999999999974 778999999999999999999
Q ss_pred ccchh
Q 003437 283 PVALP 287 (820)
Q Consensus 283 ~~~~~ 287 (820)
++++.
T Consensus 227 ~~~~~ 231 (506)
T PRK13549 227 AAGMT 231 (506)
T ss_pred cccCC
Confidence 87763
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=360.60 Aligned_cols=228 Identities=26% Similarity=0.376 Sum_probs=189.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+...... ...++.+|+|+|++|++||+++|+|||||||||||++|+|+++ +.+|+|.++|+++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~---~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFG---AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred eEEEEeEEEEeccCcccc---ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 389999999995310000 0012469999999999999999999999999999999999885 46899999999875
Q ss_pred Cc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 003437 127 TS------YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRR 197 (820)
Q Consensus 127 ~~------~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~ 197 (820)
.. ..++.++|++|++ .+++.+||+||+.+...... .....+..+++.++++.+||. +..++.++
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----- 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKLPR----- 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCChh-----
Confidence 32 1345689999996 46778999999987654211 233444567789999999996 56666654
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++.. +..+||++++|++|+
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~-~~~~~d~i~~l~~G~ 228 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRL-VQSFCQRVAVMDKGQ 228 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH-HHHHhcEEEEEeCCE
Confidence 69999999999999999999999999999999999999999999999875 8999999999984 778999999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
+++.|+++++.
T Consensus 229 i~~~g~~~~~~ 239 (265)
T TIGR02769 229 IVEECDVAQLL 239 (265)
T ss_pred EEEECCHHHHc
Confidence 99999987764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=359.34 Aligned_cols=221 Identities=25% Similarity=0.412 Sum_probs=187.1
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC---CCCceEEEEC
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ---GSLEGSVRID 121 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~---~~~~G~I~i~ 121 (820)
...|+++|+++.|++ +.+|+|+|++|++||+++|+||||||||||+|+|+|+..+ .+++|+|.++
T Consensus 11 ~~~l~~~~l~~~~~~------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~ 78 (260)
T PRK10744 11 PSKIQVRNLNFYYGK------------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLD 78 (260)
T ss_pred CceEEEEEEEEEeCC------------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEEC
Confidence 446999999999953 2499999999999999999999999999999999999752 1468999999
Q ss_pred CEeCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 003437 122 GKPVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYIG 192 (820)
Q Consensus 122 G~~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig 192 (820)
|+++.. ...++.++|++|++.+++ .||+||+.+...... ..+.++..++++++++.+++.+ ..++.
T Consensus 79 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 153 (260)
T PRK10744 79 GENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS-- 153 (260)
T ss_pred CEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC--
Confidence 998742 123567999999998888 799999988754321 2344555677899999999853 33443
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 193 ~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
+..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++.. +..+||++++|
T Consensus 154 ---~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~-~~~~~d~i~~l 228 (260)
T PRK10744 154 ---GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQQ-AARCSDYTAFM 228 (260)
T ss_pred ---CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHH-HHHhCCEEEEE
Confidence 357999999999999999999999999999999999999999999999964 7899999999974 77899999999
Q ss_pred eCCeEEEEcCccchh
Q 003437 273 ARGRLVYMGSPVALP 287 (820)
Q Consensus 273 ~~G~iv~~G~~~~~~ 287 (820)
++|+++..|+++++.
T Consensus 229 ~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 229 YLGELIEFGNTDTIF 243 (260)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999887664
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=351.32 Aligned_cols=214 Identities=29% Similarity=0.431 Sum_probs=182.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++.. ....+|+|+|+++++||+++|+||||||||||+++|+|+++ +++|+|.++|+++.
T Consensus 6 ~l~~~~l~~~~~~~~--------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~ 75 (228)
T PRK10584 6 IVEVHHLKKSVGQGE--------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPLH 75 (228)
T ss_pred eEEEeeeEEEccCCC--------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEcc
Confidence 599999999986421 01248999999999999999999999999999999999875 46899999999875
Q ss_pred Ccc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 127 TSY-------MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 127 ~~~-------~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
... .++.++|++|++.+++.+||.||+.+....+ .....+..+++.++++.+||.+..++.+. .|
T Consensus 76 ~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 147 (228)
T PRK10584 76 QMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLPA-----QL 147 (228)
T ss_pred cCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChh-----hC
Confidence 321 1246899999999999999999998865432 12344556788999999999887777664 69
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|+++. + ..||++++|++|+++
T Consensus 148 S~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~g~i~ 225 (228)
T PRK10584 148 SGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL-A-ARCDRRLRLVNGQLQ 225 (228)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 8999999999974 5 459999999999987
Q ss_pred EE
Q 003437 279 YM 280 (820)
Q Consensus 279 ~~ 280 (820)
+.
T Consensus 226 ~~ 227 (228)
T PRK10584 226 EE 227 (228)
T ss_pred ec
Confidence 53
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=353.15 Aligned_cols=210 Identities=30% Similarity=0.491 Sum_probs=175.3
Q ss_pred EEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc
Q 003437 49 EFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS 128 (820)
Q Consensus 49 ~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~ 128 (820)
+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++ +++|+|.++|+++.
T Consensus 1 ~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~-- 64 (213)
T cd03235 1 EVEDLTVSYGG------------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE-- 64 (213)
T ss_pred CcccceeEECC------------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--
Confidence 36789998853 249999999999999999999999999999999999875 46899999998764
Q ss_pred cccceEEEEccCCCCC--CCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 129 YMKMVSSYVMQDDQLF--PMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 129 ~~~~~~gyv~Q~~~l~--~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
..++.++|++|++.++ ..+||+||+.+....... .....++..++++++++.+||++..++.++ .|||||||
T Consensus 65 ~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~q 139 (213)
T cd03235 65 KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIG-----ELSGGQQQ 139 (213)
T ss_pred HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHH
Confidence 2456789999998763 337999999886432110 001123345678999999999877777664 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.++||++++|++| +++.|
T Consensus 140 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 140 RVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGL-VLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999999998789999999999974 77899999999876 66554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=358.37 Aligned_cols=220 Identities=22% Similarity=0.333 Sum_probs=186.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||+++|++ +.+|+|+|++|++||+++|+||||||||||||+|+|++.+. +++|+|.++|+
T Consensus 4 ~l~i~~v~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~ 71 (258)
T PRK14241 4 RIDVKDLNIYYGS------------FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGE 71 (258)
T ss_pred cEEEeeEEEEECC------------EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCE
Confidence 4999999999953 24999999999999999999999999999999999998643 36899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR----SATHTYIGNE 194 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~ 194 (820)
++.. ...++.++|++|++.+++.+||+||+.+....+. ..+.++..++++++++.+||. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--- 146 (258)
T PRK14241 72 DLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKPG--- 146 (258)
T ss_pred eccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCc---
Confidence 8742 1235678999999999999999999988765331 123445566788999999985 2344443
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe-
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA- 273 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~- 273 (820)
.+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++. +.++||++++|+
T Consensus 147 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~~-~~~~~d~i~~l~~ 222 (258)
T PRK14241 147 --GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQQ-AARVSDQTAFFNL 222 (258)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH-HHHhCCEEEEEec
Confidence 57999999999999999999999999999999999999999999999964 6899999999974 778999999997
Q ss_pred -----CCeEEEEcCccchh
Q 003437 274 -----RGRLVYMGSPVALP 287 (820)
Q Consensus 274 -----~G~iv~~G~~~~~~ 287 (820)
+|++++.|+++++.
T Consensus 223 ~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 223 EATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred ccCCCCceEEecCCHHHHH
Confidence 79999999887764
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=327.97 Aligned_cols=213 Identities=32% Similarity=0.499 Sum_probs=188.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|++++++++++... .+..||++|++.|++||.++|+|||||||||||-+|+|+.. +++|+|.+.|+++.
T Consensus 6 ii~~~~l~ktvg~~~--------~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~ 75 (228)
T COG4181 6 IIEVHHLSKTVGQGE--------GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLH 75 (228)
T ss_pred eeehhhhhhhhcCCC--------cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchh
Confidence 589999999986543 34679999999999999999999999999999999999875 56899999999986
Q ss_pred Cc-------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 127 TS-------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 127 ~~-------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
.. ...+++|+|||...|+|+||..||+..++.++.. +..+....+.++|+.+||.+..+.+.+ +|
T Consensus 76 ~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~HyP~-----qL 147 (228)
T COG4181 76 KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTHYPA-----QL 147 (228)
T ss_pred hcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccccCcc-----cc
Confidence 42 2456799999999999999999999999988732 334456678899999999998877765 79
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||+|||+||||++..|+|||.||||-+||..+..+|.++|-.+.. .|.|.|++||||.. ..-|||.+-|.+|+++
T Consensus 148 SGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~L--A~Rc~R~~r~~~G~l~ 225 (228)
T COG4181 148 SGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQL--AARCDRQLRLRSGRLV 225 (228)
T ss_pred CchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHH--HHhhhheeeeecceec
Confidence 99999999999999999999999999999999999999999999976 59999999999974 5569999999999997
Q ss_pred E
Q 003437 279 Y 279 (820)
Q Consensus 279 ~ 279 (820)
.
T Consensus 226 ~ 226 (228)
T COG4181 226 E 226 (228)
T ss_pred c
Confidence 4
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=354.78 Aligned_cols=213 Identities=28% Similarity=0.472 Sum_probs=182.3
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++ +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (230)
T TIGR03410 1 LEVSNLNVYYGQ------------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITK 66 (230)
T ss_pred CEEEeEEEEeCC------------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCC
Confidence 578999999853 249999999999999999999999999999999999885 468999999998753
Q ss_pred c----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCChH
Q 003437 128 S----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLG-LRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 128 ~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~ig~~~~~~LSGG 202 (820)
. ..++.++|++|++.+++.+||.||+.+....+. .. ..+.++++++.++ +.+..++.+. .||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~~~-----~LS~G 135 (230)
T TIGR03410 67 LPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRRGG-----DLSGG 135 (230)
T ss_pred CCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCChh-----hCCHH
Confidence 2 124568999999999999999999988754321 11 2234577788776 5665666654 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +..+||++++|++|++++.|
T Consensus 136 ~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~~~~d~v~~l~~g~i~~~~ 214 (230)
T TIGR03410 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDF-ARELADRYYVMERGRVVASG 214 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHH-HHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999874 8999999999974 77899999999999999999
Q ss_pred Cccch
Q 003437 282 SPVAL 286 (820)
Q Consensus 282 ~~~~~ 286 (820)
+++++
T Consensus 215 ~~~~~ 219 (230)
T TIGR03410 215 AGDEL 219 (230)
T ss_pred CHHHc
Confidence 88766
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=361.54 Aligned_cols=222 Identities=25% Similarity=0.396 Sum_probs=187.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|.++
T Consensus 10 ~~l~i~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 10 TTFALRNVSFRVPG------------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred ceEEEeeEEEEECC------------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 35999999999853 249999999999999999999999999999999999875 4689999999987
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
.. ...++.++|++|+..+++.+||.||+.+....... .........++++++++.+||++..++.++ .|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD-----SLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-----cCCH
Confidence 42 22345689999998888889999999875321100 001122345678899999999877777765 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.++||++++|++|+++..
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~-i~~~~d~i~~l~~G~i~~~ 229 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINM-AARYCDYLVALRGGEMIAQ 229 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999999999865 8999999999974 7789999999999999999
Q ss_pred cCccchh
Q 003437 281 GSPVALP 287 (820)
Q Consensus 281 G~~~~~~ 287 (820)
|+++++.
T Consensus 230 ~~~~~~~ 236 (265)
T PRK10575 230 GTPAELM 236 (265)
T ss_pred cCHHHhc
Confidence 9876653
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=362.75 Aligned_cols=223 Identities=27% Similarity=0.435 Sum_probs=190.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+.... ...+.+|+|+|++|++||+++|+||||||||||+++|+|+++ +++|+|.++|.++.
T Consensus 4 ~l~~~~l~~~~~~~~~------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~ 75 (280)
T PRK13633 4 MIKCKNVSYKYESNEE------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTS 75 (280)
T ss_pred eEEEeeeEEEcCCCCC------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecc
Confidence 5999999999964210 012459999999999999999999999999999999999985 46899999999885
Q ss_pred C----ccccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 127 T----SYMKMVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 127 ~----~~~~~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
. ...++.+||++|++. ++ ..||.||+.|..... +.++.+..++++++++.+||++..++.++ .||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS 146 (280)
T PRK13633 76 DEENLWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPH-----LLS 146 (280)
T ss_pred ccccHHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCC
Confidence 3 123567899999974 44 469999999875432 23455666789999999999988887765 699
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||+++. +.. ||++++|++|++++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~~-~d~v~~l~~G~i~~ 224 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AVE-ADRIIVMDSGKVVM 224 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hhc-CCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999976 49999999999985 554 99999999999999
Q ss_pred EcCccchhh
Q 003437 280 MGSPVALPA 288 (820)
Q Consensus 280 ~G~~~~~~~ 288 (820)
.|+++++..
T Consensus 225 ~g~~~~~~~ 233 (280)
T PRK13633 225 EGTPKEIFK 233 (280)
T ss_pred ecCHHHHhc
Confidence 999988754
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=359.08 Aligned_cols=220 Identities=25% Similarity=0.375 Sum_probs=188.8
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++|++++|++. .+.+|+|+|++|++||+++|+||||||||||+++|+|+++ +.+|+|.++|+++
T Consensus 6 ~~l~i~~l~~~~~~~----------~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 6 SIIVFKNVSFQYQSD----------ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred ceEEEEEEEEEcCCC----------CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 359999999998532 1348999999999999999999999999999999999985 4689999999987
Q ss_pred CCc---cccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 126 TTS---YMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
... ..++.++|++|++. +++..|+.+|+.+..... ....++..+++.++++.+|+.+..++.+. .|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEPN-----ALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCcc-----cCCH
Confidence 532 34567899999974 677789999998875432 23445556678899999999887776654 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.. ||++++|++|++++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~~-~d~i~~l~~G~i~~~ 223 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AME-ADHVIVMNKGTVYKE 223 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hhc-CCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999864 8999999999975 554 999999999999999
Q ss_pred cCccchh
Q 003437 281 GSPVALP 287 (820)
Q Consensus 281 G~~~~~~ 287 (820)
|+++++.
T Consensus 224 g~~~~~~ 230 (269)
T PRK13648 224 GTPTEIF 230 (269)
T ss_pred cCHHHHh
Confidence 9987764
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=361.08 Aligned_cols=217 Identities=31% Similarity=0.525 Sum_probs=187.7
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|.+. +.+|+|+|++|++||+++|+||||||||||+|+|+|+++ +.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~~-----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~ 68 (275)
T PRK13639 2 LETRDLKYSYPDG-----------TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIKY 68 (275)
T ss_pred EEEEEEEEEeCCC-----------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECcc
Confidence 7899999999521 249999999999999999999999999999999999885 458999999998742
Q ss_pred c-----cccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 128 S-----YMKMVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 128 ~-----~~~~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
. ..++.++|++|++. ++ ..||.||+.+..... ....++..+++.++++.+||.+..++.++ .||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS 139 (275)
T PRK13639 69 DKKSLLEVRKTVGIVFQNPDDQLF-APTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPH-----HLS 139 (275)
T ss_pred ccchHHHHHhheEEEeeChhhhhc-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChh-----hCC
Confidence 1 23567899999963 44 469999998764321 23455566788999999999988877765 699
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
||||||++||++|+.+|++|||||||+|||+.++..+.++|++++++|.|||+++|+++. +.++||++++|++|++++.
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~-~~~~~d~i~~l~~G~i~~~ 218 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL-VPVYADKVYVMSDGKIIKE 218 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999998779999999999974 7788999999999999999
Q ss_pred cCccchh
Q 003437 281 GSPVALP 287 (820)
Q Consensus 281 G~~~~~~ 287 (820)
|+++++.
T Consensus 219 g~~~~~~ 225 (275)
T PRK13639 219 GTPKEVF 225 (275)
T ss_pred CCHHHHh
Confidence 9988764
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=361.14 Aligned_cols=220 Identities=25% Similarity=0.415 Sum_probs=188.8
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++|+++.|++. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++
T Consensus 6 ~~l~~~nl~~~~~~~----------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 73 (271)
T PRK13632 6 VMIKVENVSFSYPNS----------ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI 73 (271)
T ss_pred eEEEEEeEEEEcCCC----------CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence 359999999998521 2359999999999999999999999999999999999985 4689999999988
Q ss_pred CCc---cccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 126 TTS---YMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
... ..++.++|++|++. .++.+||+||+.+..... ..+.++..++++++++.+||.+..++.+. .|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEPQ-----NLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCcc-----cCCH
Confidence 532 34567899999974 567789999998875432 23445556778999999999887777764 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
|||||++||+||+.+|++|||||||+|||+.++..++++|++++++ ++|||+++|+++. +. .||++++|++|+++..
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~v~~l~~G~i~~~ 223 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-AI-LADKVIVFSEGKLIAQ 223 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-Hh-hCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999876 5999999999975 54 7999999999999999
Q ss_pred cCccchh
Q 003437 281 GSPVALP 287 (820)
Q Consensus 281 G~~~~~~ 287 (820)
|+++++.
T Consensus 224 g~~~~~~ 230 (271)
T PRK13632 224 GKPKEIL 230 (271)
T ss_pred cCHHHHh
Confidence 9877654
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=355.58 Aligned_cols=224 Identities=27% Similarity=0.403 Sum_probs=185.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCceEEEECCEeC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ-GSLEGSVRIDGKPV 125 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~-~~~~G~I~i~G~~~ 125 (820)
.++++||++.|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|++.+ .+.+|+|.++|+++
T Consensus 2 ~~~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 2 IAKTTNLNLFYGK------------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred ceeeeeeEEEECC------------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 4889999999953 2499999999999999999999999999999999998743 35789999999988
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
... ..++.++|++|++.+++ .||+||+.++...+.. ........+++.++++.+||.+...... +..++.||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHH
Confidence 532 23567899999998887 5999999987543310 0022344567889999999953221111 2234579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ |+|||++||+++. +.++||++++|++|++++.|+
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~-~~~~~d~i~~l~~G~i~~~g~ 224 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQ-GKRVADYTAFFHLGELIEFGE 224 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH-HHhhCcEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999865 8999999999974 778999999999999999998
Q ss_pred ccchh
Q 003437 283 PVALP 287 (820)
Q Consensus 283 ~~~~~ 287 (820)
++++.
T Consensus 225 ~~~~~ 229 (246)
T PRK14269 225 SKEFF 229 (246)
T ss_pred HHHHH
Confidence 87654
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=362.80 Aligned_cols=222 Identities=27% Similarity=0.414 Sum_probs=190.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-CceEEEECCEeC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS-LEGSVRIDGKPV 125 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~-~~G~I~i~G~~~ 125 (820)
.|+++||++.|++. .+.+|+++|++|.+||+++|+||||||||||+++|+|++.+.. .+|+|.++|+++
T Consensus 5 ~l~i~~l~~~~~~~----------~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~ 74 (282)
T PRK13640 5 IVEFKHVSFTYPDS----------KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITL 74 (282)
T ss_pred eEEEEEEEEEcCCC----------CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEEC
Confidence 59999999998531 1349999999999999999999999999999999999985421 139999999998
Q ss_pred CCc---cccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 126 TTS---YMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
... ..++.+||++|++. +++..||.||+.|..... ..++++..+++.++++.+||.+..++.+ +.|||
T Consensus 75 ~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~ 146 (282)
T PRK13640 75 TAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLSG 146 (282)
T ss_pred CcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCH
Confidence 642 23567899999974 566789999998865432 2456666778999999999988777765 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
|||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. + ..||++++|++|++++.
T Consensus 147 G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~~~ 224 (282)
T PRK13640 147 GQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLLAQ 224 (282)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999865 9999999999985 5 47999999999999999
Q ss_pred cCccchhh
Q 003437 281 GSPVALPA 288 (820)
Q Consensus 281 G~~~~~~~ 288 (820)
|+++++..
T Consensus 225 g~~~~~~~ 232 (282)
T PRK13640 225 GSPVEIFS 232 (282)
T ss_pred CCHHHHhc
Confidence 99887643
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=348.29 Aligned_cols=209 Identities=31% Similarity=0.477 Sum_probs=178.4
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|+++ . .|+|+++++||+++|+||||||||||+++|+|+++ +++|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~~------------~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~ 64 (211)
T cd03298 1 VRLDKIRFSYGEQ------------P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTA 64 (211)
T ss_pred CEEEeEEEEeCCE------------e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCc
Confidence 4789999998531 1 29999999999999999999999999999999985 468999999998753
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ..++.++|++|++.+++.+||+||+.+...... .. .++.++++.++++.+||.+..++.+. .||||||||
T Consensus 65 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 136 (211)
T cd03298 65 APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLPG-----ELSGGERQR 136 (211)
T ss_pred CCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHH
Confidence 2 234568999999999999999999987643211 11 22345678999999999887777664 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||+++. +.++||++++|++|+++..|
T Consensus 137 v~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 137 VALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPED-AKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999999976 48999999999974 77889999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=380.42 Aligned_cols=230 Identities=32% Similarity=0.469 Sum_probs=202.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceEEEECCEe
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG--SLEGSVRIDGKP 124 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~--~~~G~I~i~G~~ 124 (820)
.|+++||+++|.... ....+++||||++.+||++||+|.|||||||+.++|.|++++. ..+|+|.++|++
T Consensus 5 lL~V~nL~v~~~~~~--------~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~d 76 (539)
T COG1123 5 LLEVENLTVEFATDG--------GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRD 76 (539)
T ss_pred eEEEeceEEEEecCC--------cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcc
Confidence 699999999997531 2246999999999999999999999999999999999998654 258999999997
Q ss_pred CCCc-------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 003437 125 VTTS-------YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195 (820)
Q Consensus 125 ~~~~-------~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~ 195 (820)
+... .+.+.++||||++ .+.|-+||.+.+.-....+.. .+.++.++++.++|+.+||++.... +.+
T Consensus 77 l~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~y 151 (539)
T COG1123 77 LLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DRY 151 (539)
T ss_pred hhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---ccC
Confidence 6431 1346789999997 478889999999888776642 3478889999999999999987655 567
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
|++|||||||||.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|.++|++|||+.- +.++||||++|++
T Consensus 152 PheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~V-va~~aDrv~Vm~~ 230 (539)
T COG1123 152 PHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYK 230 (539)
T ss_pred CcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHH-HHHhcCeEEEEEC
Confidence 899999999999999999999999999999999999999999999999985 59999999999985 8899999999999
Q ss_pred CeEEEEcCccchhhhh
Q 003437 275 GRLVYMGSPVALPAHL 290 (820)
Q Consensus 275 G~iv~~G~~~~~~~~f 290 (820)
|++++.|++++++..+
T Consensus 231 G~iVE~G~~~~i~~~p 246 (539)
T COG1123 231 GEIVETGPTEEILSNP 246 (539)
T ss_pred CEEEEecCHHHHHhcc
Confidence 9999999999997653
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=355.16 Aligned_cols=224 Identities=21% Similarity=0.368 Sum_probs=186.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CC-CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIA--QG-SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~--~~-~~~G~I~i~G~ 123 (820)
.|+++||+++|++ +.+|+|+|++|++||+++|+||||||||||+++|+|+++ +. +++|+|.++|+
T Consensus 4 ~l~~~nl~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 71 (252)
T PRK14256 4 KVKLEQLNVHFGK------------NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDT 71 (252)
T ss_pred EEEEEEEEEEeCC------------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCE
Confidence 4899999999953 249999999999999999999999999999999999975 21 35899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
++.. ...++.++|++|++.+++.+||+||+.+...... ..+..+..+++.++++.+|+.+...... +..+..
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 148 (252)
T PRK14256 72 DIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRL-KSNAME 148 (252)
T ss_pred EcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcCc
Confidence 8742 1245678999999999999999999987654321 1233444567889999999864221111 123457
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.++||++++|++|+++
T Consensus 149 LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~-~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14256 149 LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQ-AARVSDYTAFFYMGDLV 226 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHH-HHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999976 5899999999974 77899999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
..|+++++.
T Consensus 227 ~~~~~~~~~ 235 (252)
T PRK14256 227 ECGETKKIF 235 (252)
T ss_pred EeCCHHHHH
Confidence 999887653
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=349.40 Aligned_cols=209 Identities=29% Similarity=0.441 Sum_probs=183.6
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++ +.+|+|.++|.++..
T Consensus 1 l~l~~v~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~ 66 (223)
T TIGR03740 1 LETKNLSKRFGK------------QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTR 66 (223)
T ss_pred CEEEeEEEEECC------------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccc
Confidence 578999999853 249999999999999999999999999999999999875 468999999998754
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRV 207 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv 207 (820)
.. .+.++|++|++.+++.+||+||+.+....+. .. .+++.++++.+||++..++.+. .||||||||+
T Consensus 67 ~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rv 133 (223)
T TIGR03740 67 KD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKAK-----QFSLGMKQRL 133 (223)
T ss_pred cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhHh-----hCCHHHHHHH
Confidence 32 2468999999999998999999988765431 11 2467889999999987777664 6999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 208 ~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++. +.++||++++|++|++++.|++.
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSE-VQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-HHHhcCEEEEEeCCEEEEecChh
Confidence 99999999999999999999999999999999999998789999999999984 77899999999999999999865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=360.34 Aligned_cols=222 Identities=23% Similarity=0.351 Sum_probs=188.1
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ +.+|+|+||++.+||+++|+||||||||||+++|+|+++ +++|+|.++|+++
T Consensus 6 ~~l~i~~l~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 71 (265)
T PRK10253 6 ARLRGEQLTLGYGK------------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHI 71 (265)
T ss_pred cEEEEEEEEEEECC------------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEh
Confidence 35999999999963 249999999999999999999999999999999999875 4689999999987
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
... ..++.++|++|++.+++.+||+||+.+......+ .....+...+++.++++.+||.+..++.+. .|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVD-----TLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-----cCCh
Confidence 531 2345689999999999889999999875311100 000112345678899999999877777664 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++.. +.++||++++|++|++++.
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~-~~~~~d~i~~l~~G~i~~~ 225 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQ-ACRYASHLIALREGKIVAQ 225 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999874 8999999999974 8889999999999999999
Q ss_pred cCccchh
Q 003437 281 GSPVALP 287 (820)
Q Consensus 281 G~~~~~~ 287 (820)
|+++++.
T Consensus 226 g~~~~~~ 232 (265)
T PRK10253 226 GAPKEIV 232 (265)
T ss_pred CCHHHHh
Confidence 9877654
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=358.17 Aligned_cols=219 Identities=27% Similarity=0.393 Sum_probs=186.2
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|+++.|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++ +.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~~~------------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 67 (256)
T TIGR03873 2 LRLSRVSWSAGG------------RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLHG 67 (256)
T ss_pred ceEEeEEEEECC------------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEccc
Confidence 789999999853 249999999999999999999999999999999999885 468999999998753
Q ss_pred c---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 128 S---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 128 ~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
. ..++.++|++|++.+++.+||+||+.+....... ......+..+++.++++.+|+.+..++.++ .|||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 142 (256)
T TIGR03873 68 LSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMS-----TLSGGE 142 (256)
T ss_pred CCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHH
Confidence 2 2345689999998877888999999885321000 011122344678899999999877777665 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|+++. +.++||++++|++|++++.|++
T Consensus 143 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~G~i~~~g~~ 221 (256)
T TIGR03873 143 RQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNL-AASYCDHVVVLDGGRVVAAGPP 221 (256)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEeCCCEEEecCH
Confidence 999999999999999999999999999999999999999998778999999999984 7789999999999999999987
Q ss_pred cch
Q 003437 284 VAL 286 (820)
Q Consensus 284 ~~~ 286 (820)
+++
T Consensus 222 ~~~ 224 (256)
T TIGR03873 222 REV 224 (256)
T ss_pred HHh
Confidence 665
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=392.02 Aligned_cols=221 Identities=29% Similarity=0.518 Sum_probs=191.6
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+|+||+|.|+.+. +.+||+|+||+|+|||.+||+||||+||||+.++|-.++. |.+|+|++||+|
T Consensus 463 ~G~IeF~~VsFaYP~Rp---------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~~ 531 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTRP---------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGVP 531 (716)
T ss_pred cceEEEEEeeeecCCCC---------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCee
Confidence 34699999999998653 4679999999999999999999999999999999999885 568999999999
Q ss_pred CCC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCCCC
Q 003437 125 VTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRV-----YELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 125 ~~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
+.+ ..+++++|+|.|+|.||.. ||+|||.|+.. ..+.++....+ .+.+. ++++..||.+|+.+.
T Consensus 532 i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG~ 603 (716)
T KOG0058|consen 532 ISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKGS 603 (716)
T ss_pred hhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCccccccccCCccc
Confidence 865 3577899999999999988 99999999864 23444443322 22333 668889999997654
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
+||||||||+||||||++||+||||||.||+||.++...|.+.|.++.+ ++|||++.|..+. + +.+|+|+++++|+
T Consensus 604 -qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLST-V-~~Ad~Ivvi~~G~ 679 (716)
T KOG0058|consen 604 -QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLST-V-RHADQIVVIDKGR 679 (716)
T ss_pred -cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhH-h-hhccEEEEEcCCe
Confidence 7999999999999999999999999999999999999999999999876 4999999999985 4 5699999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
+++.|+.+|+++
T Consensus 680 V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 680 VVEMGTHDELLS 691 (716)
T ss_pred EEecccHHHHhh
Confidence 999999888864
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=353.98 Aligned_cols=223 Identities=23% Similarity=0.360 Sum_probs=183.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---CceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS---LEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~---~~G~I~i~G~ 123 (820)
.|+++||+++|.+ +.+|+|+|+++++||+++|+||||||||||+++|+|+....+ ++|+|.++|+
T Consensus 5 ~l~~~~l~~~~~~------------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~ 72 (252)
T PRK14239 5 ILQVSDLSVYYNK------------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGH 72 (252)
T ss_pred eEEEEeeEEEECC------------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCE
Confidence 5999999999853 249999999999999999999999999999999999853223 4899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
++.. ...++.++||+|++.+++ +||+||+.+....+. ........+++.++++.+++.+...... +..+..
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 148 (252)
T PRK14239 73 NIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRL-HDSALG 148 (252)
T ss_pred ECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHH-hcCccc
Confidence 8742 123567899999998887 799999998754321 1123334567888999999853211111 223457
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||||+||++|+.+|++|||||||+|||+.++..+.++|+++++ ++|||++||+++. +.++||++++|++|+++
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~-~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14239 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQ-ASRISDRTGFFLDGDLI 226 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHH-HHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999965 6899999999974 78899999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
+.|+++++.
T Consensus 227 ~~g~~~~~~ 235 (252)
T PRK14239 227 EYNDTKQMF 235 (252)
T ss_pred EeCCHHHHH
Confidence 999987763
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=345.84 Aligned_cols=210 Identities=29% Similarity=0.447 Sum_probs=180.3
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
++++||++.|.. +++|+|+++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++..
T Consensus 1 ~~~~~l~~~~~~--------------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 64 (213)
T TIGR01277 1 LALDKVRYEYEH--------------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTG 64 (213)
T ss_pred CeEEeeeEEeCC--------------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEccc
Confidence 478999999841 4679999999999999999999999999999999885 468999999998753
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ..++.++|++|++.+++.+|+.||+.+...... ..+.+.+++++++++.+||++..++.+. .||||||||
T Consensus 65 ~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 136 (213)
T TIGR01277 65 LAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL---KLNAEQQEKVVDAAQQVGIADYLDRLPE-----QLSGGQRQR 136 (213)
T ss_pred CChhccceEEEeccCccCCCCcHHHHHHhHhhccC---CccHHHHHHHHHHHHHcCcHHHhhCCcc-----cCCHHHHHH
Confidence 2 245678999999999999999999987643211 1122335678899999999877777654 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
++||++|+.+|++|||||||+|||+.++..+.++|+++.++ |.|||+++|+++. +.++||++++|++|+++..|.
T Consensus 137 l~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~-~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSD-ARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999999999999999864 8999999999974 778899999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=355.98 Aligned_cols=221 Identities=23% Similarity=0.361 Sum_probs=186.0
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---CceEEEEC
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS---LEGSVRID 121 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~---~~G~I~i~ 121 (820)
...|+++||++.|+. +.+|+|+|++|++||+++|+||||||||||+++|+|++.+.+ ++|+|.++
T Consensus 10 ~~~l~i~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~ 77 (259)
T PRK14274 10 QEVYQINGMNLWYGQ------------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYN 77 (259)
T ss_pred CceEEEeeEEEEECC------------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEEC
Confidence 345999999999853 249999999999999999999999999999999999875312 58999999
Q ss_pred CEeCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc----cccccc
Q 003437 122 GKPVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA----THTYIG 192 (820)
Q Consensus 122 G~~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~----~~~~ig 192 (820)
|+++.. ...++.++|++|++.+++. ||+||+.+....+. ...+++..++++++++.+|+.+. .++.
T Consensus 78 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~-- 152 (259)
T PRK14274 78 GSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQ-- 152 (259)
T ss_pred CEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCC--
Confidence 998742 1235678999999988886 99999988754321 11334555678889999998642 3343
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 193 ~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
+.+||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.++||++++|
T Consensus 153 ---~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~-~~~~~d~i~~l 227 (259)
T PRK14274 153 ---ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQ-AARVSDQTAFF 227 (259)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHH-HHHhCCEEEEE
Confidence 357999999999999999999999999999999999999999999999965 7999999999974 78899999999
Q ss_pred eCCeEEEEcCccchh
Q 003437 273 ARGRLVYMGSPVALP 287 (820)
Q Consensus 273 ~~G~iv~~G~~~~~~ 287 (820)
++|+++..|+++++.
T Consensus 228 ~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 228 YMGELVECNDTNKMF 242 (259)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999988764
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=354.29 Aligned_cols=213 Identities=33% Similarity=0.453 Sum_probs=183.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++.+||+++|+||||||||||+++|+|+++ +++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 68 (241)
T PRK14250 3 EIEFKEVSYSSFG------------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIK 68 (241)
T ss_pred eEEEEeEEEEeCC------------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 4899999999853 249999999999999999999999999999999999875 46899999999875
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCChH
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSGG 202 (820)
. ...++.++|++|++.+++ .||+||+.+....+ . ...+++.++++.+||+ +..++.+ ..||||
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G 135 (241)
T PRK14250 69 TIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRDV-----KNLSGG 135 (241)
T ss_pred hcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCCc-----ccCCHH
Confidence 3 223567899999998887 59999998754321 1 1235678899999996 4555554 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.++||++++|++|+++..|
T Consensus 136 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~-~~~~~d~i~~l~~G~i~~~~ 214 (241)
T PRK14250 136 EAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ-AKRIGDYTAFLNKGILVEYA 214 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH-HHHhCCEEEEEeCCEEEEeC
Confidence 999999999999999999999999999999999999999999874 9999999999984 77899999999999999999
Q ss_pred Cccchh
Q 003437 282 SPVALP 287 (820)
Q Consensus 282 ~~~~~~ 287 (820)
+++++.
T Consensus 215 ~~~~~~ 220 (241)
T PRK14250 215 KTYDFF 220 (241)
T ss_pred CHHHHh
Confidence 887764
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=372.02 Aligned_cols=210 Identities=28% Similarity=0.451 Sum_probs=183.2
Q ss_pred EEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc---
Q 003437 52 NLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS--- 128 (820)
Q Consensus 52 nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~--- 128 (820)
||+++|++. .+ |+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++...
T Consensus 4 ~l~~~~~~~-------------~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~ 67 (354)
T TIGR02142 4 RFSKRLGDF-------------SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKG 67 (354)
T ss_pred EEEEEECCE-------------EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccc
Confidence 788888531 24 8999999999999999999999999999999985 4689999999987421
Q ss_pred ----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 129 ----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 129 ----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
..++.++|++|++.+++.+||+||+.|+.... ...+..++++++++.+||.+..++.+. .||||||
T Consensus 68 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGqk 137 (354)
T TIGR02142 68 IFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPG-----RLSGGEK 137 (354)
T ss_pred cccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHH
Confidence 23567899999999999999999999875421 223445678999999999988877765 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
|||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +..+||++++|++|+++..|++
T Consensus 138 qRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~-~~~~~d~i~~l~~G~i~~~g~~ 216 (354)
T TIGR02142 138 QRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQE-VLRLADRVVVLEDGRVAAAGPI 216 (354)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEeCCEEEEECCH
Confidence 9999999999999999999999999999999999999999875 8999999999974 7889999999999999999998
Q ss_pred cchhh
Q 003437 284 VALPA 288 (820)
Q Consensus 284 ~~~~~ 288 (820)
+++..
T Consensus 217 ~~~~~ 221 (354)
T TIGR02142 217 AEVWA 221 (354)
T ss_pred HHHhc
Confidence 87643
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=371.57 Aligned_cols=209 Identities=28% Similarity=0.467 Sum_probs=183.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|++ ||+++|+++ .+ |+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++..
T Consensus 2 l~~-~l~k~~~~~-------------~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~ 64 (352)
T PRK11144 2 LEL-NFKQQLGDL-------------CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFD 64 (352)
T ss_pred eEE-EEEEEeCCE-------------EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 677 999998531 23 8999999999999999999999999999999885 468999999998742
Q ss_pred -------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 128 -------SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 128 -------~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
...++.++||+|+..++|.+||+||+.++.. ....++++++++.+||++..++.+. .||
T Consensus 65 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS 130 (352)
T PRK11144 65 AEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYPG-----SLS 130 (352)
T ss_pred cccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCcc-----cCC
Confidence 1235678999999999999999999988642 1234578899999999887777764 699
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++..+||++++|++|+++.
T Consensus 131 gGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~ 209 (352)
T PRK11144 131 GGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKA 209 (352)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999875 899999999997 4888999999999999999
Q ss_pred EcCccchhh
Q 003437 280 MGSPVALPA 288 (820)
Q Consensus 280 ~G~~~~~~~ 288 (820)
.|+++++..
T Consensus 210 ~g~~~~i~~ 218 (352)
T PRK11144 210 FGPLEEVWA 218 (352)
T ss_pred ecCHHHHHh
Confidence 999988753
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=353.48 Aligned_cols=219 Identities=25% Similarity=0.383 Sum_probs=185.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||++.|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~ 71 (251)
T PRK14270 4 KMESKNLNLWYGE------------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGK 71 (251)
T ss_pred EEEEEEeEEEECC------------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCE
Confidence 5899999999853 24999999999999999999999999999999999987542 36899999999
Q ss_pred eCCCc-----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCC
Q 003437 124 PVTTS-----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYIGNE 194 (820)
Q Consensus 124 ~~~~~-----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig~~ 194 (820)
++... ..++.++|++|++.+++ +|++||+.+...... .....+..+++.++++.+||.+ ..++.
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 144 (251)
T PRK14270 72 NIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKS---- 144 (251)
T ss_pred ecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCC----
Confidence 87531 23566899999998887 899999998754321 1123445567888999998853 23333
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.++||++++|++
T Consensus 145 -~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~ 221 (251)
T PRK14270 145 -ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLM 221 (251)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999976 589999999997 47889999999999
Q ss_pred CeEEEEcCccchh
Q 003437 275 GRLVYMGSPVALP 287 (820)
Q Consensus 275 G~iv~~G~~~~~~ 287 (820)
|++++.|+++++.
T Consensus 222 G~i~~~~~~~~~~ 234 (251)
T PRK14270 222 GDLIEFNKTEKIF 234 (251)
T ss_pred CeEEEeCCHHHHh
Confidence 9999999987764
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=361.77 Aligned_cols=222 Identities=25% Similarity=0.372 Sum_probs=185.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+++.. ....+|+|+||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|.++.
T Consensus 6 ~l~i~nl~~~~~~~~~-------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (289)
T PRK13645 6 DIILDNVSYTYAKKTP-------FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAIP 76 (289)
T ss_pred eEEEEEEEEEeCCCCc-------cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcc
Confidence 4999999999964210 01249999999999999999999999999999999999985 46899999999874
Q ss_pred C--------ccccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 003437 127 T--------SYMKMVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEG 195 (820)
Q Consensus 127 ~--------~~~~~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~ 195 (820)
. ...++.++|++|++. +++ .||+||+.+..... ....++..+++.++++.++|. +..++.++
T Consensus 77 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~--- 149 (289)
T PRK13645 77 ANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSPF--- 149 (289)
T ss_pred ccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCChh---
Confidence 1 123567899999973 444 59999998875422 233445556788999999994 56666654
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++. +.++||++++|++
T Consensus 150 --~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~-~~~~~d~i~~l~~ 226 (289)
T PRK13645 150 --ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQ-VLRIADEVIVMHE 226 (289)
T ss_pred --hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999976 48999999999974 7889999999999
Q ss_pred CeEEEEcCccchh
Q 003437 275 GRLVYMGSPVALP 287 (820)
Q Consensus 275 G~iv~~G~~~~~~ 287 (820)
|++++.|+++++.
T Consensus 227 G~i~~~g~~~~~~ 239 (289)
T PRK13645 227 GKVISIGSPFEIF 239 (289)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999887653
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=358.40 Aligned_cols=221 Identities=23% Similarity=0.353 Sum_probs=184.5
Q ss_pred CCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEE
Q 003437 44 PGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRI 120 (820)
Q Consensus 44 ~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i 120 (820)
+...|+++||+++|+. +.+|+|+||+|++||+++|+||||||||||+++|+|++++. +++|+|.+
T Consensus 10 ~~~~l~i~nl~~~~~~------------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~ 77 (269)
T PRK14259 10 KNIIISLQNVTISYGT------------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLF 77 (269)
T ss_pred CCceEEEEeEEEEECC------------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEE
Confidence 4456999999999953 24999999999999999999999999999999999987521 47899999
Q ss_pred CCEeCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccc
Q 003437 121 DGKPVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYI 191 (820)
Q Consensus 121 ~G~~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~i 191 (820)
+|+++.. ...++.++|++|++.+++. ||+||+.+.+..+ .... +..+++.++++.+++.. ..++.
T Consensus 78 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~- 151 (269)
T PRK14259 78 DGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYTG-DMDELVERSLRKAAVWDECKDKLNES- 151 (269)
T ss_pred CCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCcchhhhhhCCC-
Confidence 9998742 2235668999999988885 9999999876533 1222 33456788899888743 33443
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEE
Q 003437 192 GNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 192 g~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
+..|||||||||+|||+|+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||+++. +..+||++++
T Consensus 152 ----~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~-~~~~~d~i~~ 225 (269)
T PRK14259 152 ----GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQQ-AVRVSDMTAF 225 (269)
T ss_pred ----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhcCEEEE
Confidence 457999999999999999999999999999999999999999999999964 7899999999974 7889999999
Q ss_pred EeC-----------CeEEEEcCccchhh
Q 003437 272 LAR-----------GRLVYMGSPVALPA 288 (820)
Q Consensus 272 L~~-----------G~iv~~G~~~~~~~ 288 (820)
|++ |++++.|+++++..
T Consensus 226 l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 226 FNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred EeccccccccccccceEEEeCCHHHHHh
Confidence 996 67899999887753
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=350.47 Aligned_cols=215 Identities=27% Similarity=0.452 Sum_probs=184.4
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++. ..|+||++++||+++|+||||||||||+++|+|+.+ +++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~~--------------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 65 (232)
T PRK10771 2 LKLTDITWLYHHL--------------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHTT 65 (232)
T ss_pred eEEEEEEEEECCc--------------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecCc
Confidence 7899999999531 238999999999999999999999999999999875 468999999998753
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ..++.++|++|++.+++.+||.||+.+...... .. .+...+++.++++.+||++..++.+. .||||||||
T Consensus 66 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 137 (232)
T PRK10771 66 TPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLPG-----QLSGGQRQR 137 (232)
T ss_pred CChhhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHHHHH
Confidence 2 124568999999999999999999987632110 11 22345678999999999887777765 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++.. +.++||++++|++|++++.|++++
T Consensus 138 v~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~g~i~~~g~~~~ 216 (232)
T PRK10771 138 VALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLED-AARIAPRSLVVADGRIAWDGPTDE 216 (232)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999764 8999999999984 778899999999999999998776
Q ss_pred hh
Q 003437 286 LP 287 (820)
Q Consensus 286 ~~ 287 (820)
+.
T Consensus 217 ~~ 218 (232)
T PRK10771 217 LL 218 (232)
T ss_pred HH
Confidence 64
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=348.99 Aligned_cols=217 Identities=30% Similarity=0.492 Sum_probs=188.9
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|+. +.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~ 66 (232)
T cd03300 1 IELENVSKFYGG------------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITN 66 (232)
T ss_pred CEEEeEEEEeCC------------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCc
Confidence 468999999853 2499999999999999999999999999999999999854 57999999998864
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ..++.++|++|++.+++.+||.||+.+....+ ..+.....++++++++.+||.+..++.+. .||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKPS-----QLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHH
Confidence 2 23467899999999998899999998876543 12344456678899999999887777664 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++.. +.++||++++|++|++++.|+.++
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~-~~~~~d~i~~l~~G~~~~~~~~~~ 217 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEE-ALTMSDRIAVMNKGKIQQIGTPEE 217 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999875 8999999999974 788999999999999999988765
Q ss_pred hh
Q 003437 286 LP 287 (820)
Q Consensus 286 ~~ 287 (820)
+.
T Consensus 218 ~~ 219 (232)
T cd03300 218 IY 219 (232)
T ss_pred HH
Confidence 53
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=355.64 Aligned_cols=224 Identities=24% Similarity=0.328 Sum_probs=187.3
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC---CCCceEEEECC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ---GSLEGSVRIDG 122 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~---~~~~G~I~i~G 122 (820)
..|+++||+++|+. +.+|+|+|+++.+||+++|+|||||||||||++|+|++.+ .+++|+|.++|
T Consensus 19 ~~l~~~nl~~~~~~------------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 86 (267)
T PRK14237 19 IALSTKDLHVYYGK------------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRG 86 (267)
T ss_pred eEEEEeeEEEEECC------------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECC
Confidence 35999999999853 3499999999999999999999999999999999999754 25789999999
Q ss_pred EeCCCc-----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 003437 123 KPVTTS-----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 123 ~~~~~~-----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
.++... ..++.++|++|++.+++ .||+||+.++.... ....+++..+++.++++.++|.+..+... +..++
T Consensus 87 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~ 162 (267)
T PRK14237 87 IDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDL-HKSAL 162 (267)
T ss_pred EEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcc
Confidence 987421 23567899999998887 59999999875432 11234445677889999999964322222 23346
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||+++. +.++||++++|++|++
T Consensus 163 ~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~-~~~~~d~i~~l~~G~i 240 (267)
T PRK14237 163 TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQQ-AARASDYTAFFYLGDL 240 (267)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH-HHHhcCEEEEEECCEE
Confidence 7999999999999999999999999999999999999999999999964 7999999999984 7889999999999999
Q ss_pred EEEcCccchh
Q 003437 278 VYMGSPVALP 287 (820)
Q Consensus 278 v~~G~~~~~~ 287 (820)
++.|+++++.
T Consensus 241 ~~~g~~~~~~ 250 (267)
T PRK14237 241 IEYDKTRNIF 250 (267)
T ss_pred EEeCCHHHHh
Confidence 9999987763
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=350.22 Aligned_cols=217 Identities=29% Similarity=0.467 Sum_probs=189.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|.. +.+|+|+|+++.+||+++|+||||||||||+++|+|+++ +.+|+|.++|.++..
T Consensus 1 i~i~~l~~~~~~------------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 1 IEIANISKRFGS------------FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATR 66 (237)
T ss_pred CEEEEEEEEECC------------eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 478999999853 249999999999999999999999999999999999875 467999999998754
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ..++.++|++|++.+++.+|+.||+.+....+ ..+.....+.++++++.+++.+..++.++ .|||||+||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYPN-----QLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChh-----hCCHHHHHH
Confidence 2 23467899999999999999999998876533 12334445678999999999877777664 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++. +.++||++++|++|++++.|+.++
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~-~~~~~d~i~~l~~g~i~~~~~~~~ 217 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEE-AMEVADRIVVMSNGKIEQIGSPDE 217 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHhhcCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999875 8999999999974 788999999999999999998776
Q ss_pred hh
Q 003437 286 LP 287 (820)
Q Consensus 286 ~~ 287 (820)
+.
T Consensus 218 ~~ 219 (237)
T TIGR00968 218 VY 219 (237)
T ss_pred HH
Confidence 64
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=356.77 Aligned_cols=228 Identities=22% Similarity=0.375 Sum_probs=188.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+.+.... ..+.+.+|+|+|+++++||+++|+|||||||||||++|+|+++ +.+|+|.++|.++.
T Consensus 4 ~l~~~~l~~~~~~~~~~~---~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 78 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWF---RRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLH 78 (267)
T ss_pred eEEEeceEEEecCCCCcc---cccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 499999999995321000 0012359999999999999999999999999999999999985 46899999999875
Q ss_pred Cc---cccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCC
Q 003437 127 TS---YMKMVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRRGVS 200 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LS 200 (820)
.. ..++.++|++|++. +++.+||.+++.+...... .....+..+++.++++.+||. +..++.+ ..||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 151 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYP-----HMLA 151 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCc-----hhcC
Confidence 31 22356899999974 6788899999988655431 233445556789999999994 5556554 4699
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|+++. +..+||++++|++|++++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~-~~~~~d~i~~l~~G~i~~ 230 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGM-MKHISDQVLVMHQGEVVE 230 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH-HHHhcCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999874 8999999999974 788899999999999999
Q ss_pred EcCccchh
Q 003437 280 MGSPVALP 287 (820)
Q Consensus 280 ~G~~~~~~ 287 (820)
.|+++++.
T Consensus 231 ~~~~~~~~ 238 (267)
T PRK15112 231 RGSTADVL 238 (267)
T ss_pred cCCHHHHh
Confidence 99877654
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=349.21 Aligned_cols=216 Identities=31% Similarity=0.540 Sum_probs=188.1
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|+++.|.+ ++|+|+|++|++||+++|+||||||||||+++|+|+++ +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~-------------~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~ 65 (235)
T cd03299 1 LKVENLSKDWKE-------------FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITN 65 (235)
T ss_pred CeeEeEEEEeCC-------------ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCc
Confidence 468999998842 27999999999999999999999999999999999875 468999999998764
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ..++.++|++|++.+++.+||.||+.+..... ..+..+..+.+.++++.+||.+..++.+. .||||||||
T Consensus 66 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 137 (235)
T cd03299 66 LPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKPE-----TLSGGEQQR 137 (235)
T ss_pred CChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCcc-----cCCHHHHHH
Confidence 2 23567899999999999999999998875432 23445556678899999999887777764 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
|+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++.. +.++||++++|++|++++.|++++
T Consensus 138 l~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~-~~~~~d~i~~l~~G~i~~~~~~~~ 216 (235)
T cd03299 138 VAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEE-AWALADKVAIMLNGKLIQVGKPEE 216 (235)
T ss_pred HHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999765 9999999999974 778999999999999999998766
Q ss_pred hh
Q 003437 286 LP 287 (820)
Q Consensus 286 ~~ 287 (820)
+.
T Consensus 217 ~~ 218 (235)
T cd03299 217 VF 218 (235)
T ss_pred HH
Confidence 53
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=326.11 Aligned_cols=215 Identities=32% Similarity=0.520 Sum_probs=193.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.+.+++++.+|.++ ...+|+|||++|.+||.++++||||||||||||+++|+.+| ..|+|.+||++++
T Consensus 3 ~l~~~~~sl~y~g~----------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P--~~G~i~l~~r~i~ 70 (259)
T COG4525 3 MLNVSHLSLSYEGK----------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRIE 70 (259)
T ss_pred eeehhheEEecCCc----------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc--ccceEEECCEecc
Confidence 47788999999754 24599999999999999999999999999999999999864 5799999999997
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
... ...|.|||++.|+|.+||.||+.|+.+++ ++++.++.+++.+.+..+||++..+++| .+||||||||
T Consensus 71 gPg--aergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQR 140 (259)
T COG4525 71 GPG--AERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQR 140 (259)
T ss_pred CCC--ccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHH
Confidence 532 23489999999999999999999999987 6889999999999999999999887776 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeC--CeEEEEcCc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLAR--GRLVYMGSP 283 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~--G~iv~~G~~ 283 (820)
|.|||||+.+|++|+||||+++||.-+++++.++|-++.+ .|+.++++||+.+. +.-+++++++|+. |+++..-++
T Consensus 141 vGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieE-AlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 141 VGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEE-ALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHhhhheeEEecCCCceeeEecCC
Confidence 9999999999999999999999999999999999999875 69999999999985 5568999999995 799987777
Q ss_pred c
Q 003437 284 V 284 (820)
Q Consensus 284 ~ 284 (820)
+
T Consensus 220 d 220 (259)
T COG4525 220 D 220 (259)
T ss_pred C
Confidence 6
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=334.21 Aligned_cols=219 Identities=32% Similarity=0.487 Sum_probs=188.4
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+.+||+++..+ +.+|++||++++|||+++|+||||||||||||.|+|.+. +.+|++.+||.+++.
T Consensus 2 i~a~nls~~~~G------------r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~~ 67 (259)
T COG4559 2 IRAENLSYSLAG------------RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLNS 67 (259)
T ss_pred eeeeeeEEEeec------------ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChhh
Confidence 789999999854 359999999999999999999999999999999999875 467999999999875
Q ss_pred c---cccceEEEEccCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 128 S---YMKMVSSYVMQDDQL-FPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 128 ~---~~~~~~gyv~Q~~~l-~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
. .+.+..+.+||+..+ || .||.|-+.++..-.. .+....+..+.++++|...++.+.+.+.+- .|||||
T Consensus 68 ~~~~~lA~~raVlpQ~s~laFp-Ftv~eVV~mGr~p~~-~g~~~~e~~~i~~~ala~~d~~~la~R~y~-----~LSGGE 140 (259)
T COG4559 68 WPPEELARHRAVLPQNSSLAFP-FTVQEVVQMGRIPHR-SGREPEEDERIAAQALAATDLSGLAGRDYR-----TLSGGE 140 (259)
T ss_pred CCHHHHHHHhhhcccCcccccc-eEHHHHHHhcccccc-cCCCchhhHHHHHHHHHHcChhhhhccchh-----hcCchH
Confidence 3 234556899999876 55 599999999864221 112233566678999999999988776653 699999
Q ss_pred HHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 204 RRRVSIGIDIIH------KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 204 rqRv~ia~aL~~------~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
||||.+||.|++ ++++||||||||+||...+..++++.++++++|..|+++.||.+. ...+||||++|++||+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~Grv 219 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQGRV 219 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeCCeE
Confidence 999999999986 456999999999999999999999999999999999999999996 7789999999999999
Q ss_pred EEEcCccchhh
Q 003437 278 VYMGSPVALPA 288 (820)
Q Consensus 278 v~~G~~~~~~~ 288 (820)
+..|+|++++.
T Consensus 220 ~a~g~p~~vlt 230 (259)
T COG4559 220 IASGSPQDVLT 230 (259)
T ss_pred eecCCHHHhcC
Confidence 99999988863
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=351.78 Aligned_cols=219 Identities=24% Similarity=0.408 Sum_probs=184.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---CceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS---LEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~---~~G~I~i~G~ 123 (820)
.|+++||++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+..+.+ ++|+|.++|+
T Consensus 3 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14240 3 KISVKDLDLFYGD------------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQ 70 (250)
T ss_pred eEEEEEEEEEECC------------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCE
Confidence 4899999999853 249999999999999999999999999999999999864322 5899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYIGNE 194 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig~~ 194 (820)
++.. ...++.++|++|++.+++ +||.||+.+....+. ..+.++..++++++++.+++.+ ..++.+
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--- 144 (250)
T PRK14240 71 DIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSA--- 144 (250)
T ss_pred EccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCC---
Confidence 8753 123567899999998888 899999998754321 1123445677888999998753 234443
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.++||++++|++
T Consensus 145 --~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~ 220 (250)
T PRK14240 145 --LGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLN 220 (250)
T ss_pred --CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEEC
Confidence 57999999999999999999999999999999999999999999999964 799999999987 47889999999999
Q ss_pred CeEEEEcCccchh
Q 003437 275 GRLVYMGSPVALP 287 (820)
Q Consensus 275 G~iv~~G~~~~~~ 287 (820)
|+++..|+++++.
T Consensus 221 G~i~~~~~~~~~~ 233 (250)
T PRK14240 221 GEIVEFGDTVDLF 233 (250)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999877653
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=351.39 Aligned_cols=220 Identities=24% Similarity=0.368 Sum_probs=184.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---CceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS---LEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~---~~G~I~i~G~ 123 (820)
.|+++||++.|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|++.+.+ ++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 71 (252)
T PRK14272 4 LLSAQDVNIYYGD------------KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQ 71 (252)
T ss_pred EEEEeeeEEEECC------------EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCE
Confidence 5899999999853 249999999999999999999999999999999999986533 4799999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR----SATHTYIGNE 194 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~ 194 (820)
++.. ...++.++|++|++.+++.+|+.||+.+...... ...+++..+.+.++++.+++. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--- 146 (252)
T PRK14272 72 DIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTPA--- 146 (252)
T ss_pred EcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCCc---
Confidence 8752 1235568999999999999999999987654321 112334456677788888764 2334444
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.++||++++|++
T Consensus 147 --~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~~~~~d~i~~l~~ 222 (252)
T PRK14272 147 --TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQ-AARVSDTTSFFLV 222 (252)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHH-HHHhCCEEEEEEC
Confidence 57999999999999999999999999999999999999999999999965 7999999999984 7789999999999
Q ss_pred CeEEEEcCccchh
Q 003437 275 GRLVYMGSPVALP 287 (820)
Q Consensus 275 G~iv~~G~~~~~~ 287 (820)
|++++.|+++++.
T Consensus 223 G~i~~~~~~~~~~ 235 (252)
T PRK14272 223 GDLVEHGPTDQLF 235 (252)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999987764
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=349.55 Aligned_cols=222 Identities=34% Similarity=0.473 Sum_probs=183.3
Q ss_pred EEEEEEEEECcccccc---------cccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEE
Q 003437 49 EFKNLSYSIMKKQKKD---------GVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVR 119 (820)
Q Consensus 49 ~~~nls~~~~~~~~~~---------~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~ 119 (820)
+++|+++.|....... .++....+.+|+|+||++++||+++|+|||||||||||++|+|+++ +++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~ 79 (236)
T cd03267 2 EVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVR 79 (236)
T ss_pred ceecchhhccCcCCccccchhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEE
Confidence 5677887776522110 0011234569999999999999999999999999999999999885 4689999
Q ss_pred ECCEeCCC--ccccceEEEEc-cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 003437 120 IDGKPVTT--SYMKMVSSYVM-QDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 120 i~G~~~~~--~~~~~~~gyv~-Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
++|+++.. ...++.++|++ |++.+++.+||+||+.+....+ ....++..+++.++++.+||.+..++.+.
T Consensus 80 ~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---- 152 (236)
T cd03267 80 VAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVR---- 152 (236)
T ss_pred ECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChh----
Confidence 99987642 22456789998 5567888899999998876543 23344556678899999999988887765
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ .+..+||++++|++|
T Consensus 153 -~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G 230 (236)
T cd03267 153 -QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKG 230 (236)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCC
Confidence 69999999999999999999999999999999999999999999999864 899999999997 478899999999999
Q ss_pred eEEEEc
Q 003437 276 RLVYMG 281 (820)
Q Consensus 276 ~iv~~G 281 (820)
++++.|
T Consensus 231 ~i~~~g 236 (236)
T cd03267 231 RLLYDG 236 (236)
T ss_pred EEEecC
Confidence 998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=350.48 Aligned_cols=223 Identities=22% Similarity=0.396 Sum_probs=185.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+..+. +++|+|.++|.
T Consensus 3 ~l~~~~l~~~~~~------------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 3 IIEIENFSAYYGE------------KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred eEEEEeeEEEeCC------------ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 4899999999853 24899999999999999999999999999999999987531 36899999999
Q ss_pred eCCCc-----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 124 PVTTS-----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 124 ~~~~~-----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
++... ..++.++|++|++.+++ .||+||+.+...... ....+..++.++++++.+|+.+..+... +..+.+
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 146 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGTR 146 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHH-hCChhh
Confidence 87531 23567899999999888 799999998754321 1123344566888999999864321111 233457
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +..+||++++|++|+++
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~-~~~~~d~i~~l~~G~i~ 224 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQ-AIRIADYIAFMYRGELI 224 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHH-HHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999975 7899999999974 77899999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
..|+++++.
T Consensus 225 ~~g~~~~~~ 233 (250)
T PRK14262 225 EYGPTREIV 233 (250)
T ss_pred EecCHHHHH
Confidence 999887764
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=351.24 Aligned_cols=222 Identities=22% Similarity=0.366 Sum_probs=183.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||++.|++ +.+|+|+|++|++||+++|+||||||||||+++|+|+.++. +++|+|.++|.
T Consensus 3 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 70 (249)
T PRK14253 3 KFNIENLDLFYGE------------NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGE 70 (249)
T ss_pred eEEEeccEEEECC------------eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCE
Confidence 4899999999853 24999999999999999999999999999999999987642 36899999999
Q ss_pred eCCC----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 124 PVTT----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 124 ~~~~----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
++.. ...++.++|++|++.+++ .||.||+.+...... ....+...+++.++++.+++.+...... +..+.+|
T Consensus 71 ~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~L 146 (249)
T PRK14253 71 DIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGL 146 (249)
T ss_pred EcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccC
Confidence 8742 134567899999999887 799999988754321 1123344567888899998854221111 1234579
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
||||||||+||++|+.+|++|||||||+|||+.++..+.++|+++++ ++|||++||++.. +..+||++++|++|+++.
T Consensus 147 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~~~d~i~~l~~G~i~~ 224 (249)
T PRK14253 147 SGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQ-ARRISDRTAFFLMGELVE 224 (249)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHH-HHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999976 5899999999974 788999999999999999
Q ss_pred EcCccch
Q 003437 280 MGSPVAL 286 (820)
Q Consensus 280 ~G~~~~~ 286 (820)
.|+++++
T Consensus 225 ~g~~~~~ 231 (249)
T PRK14253 225 HDDTQVI 231 (249)
T ss_pred eCCHHHH
Confidence 9987665
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=356.69 Aligned_cols=220 Identities=30% Similarity=0.415 Sum_probs=189.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++.. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++ +.+|+|.++|+++.
T Consensus 4 ~l~~~~l~~~~~~~~---------~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~ 72 (277)
T PRK13642 4 ILEVENLVFKYEKES---------DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLT 72 (277)
T ss_pred eEEEEEEEEEcCCCC---------cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEECC
Confidence 499999999996321 1349999999999999999999999999999999999985 46899999999875
Q ss_pred Cc---cccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 TS---YMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
.. ..++.++|++|++. .++..||.||+.+..... ...+++..++++++++.+||.+..++.+. .||||
T Consensus 73 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 144 (277)
T PRK13642 73 AENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREPA-----RLSGG 144 (277)
T ss_pred cCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCHH
Confidence 32 24567899999974 566789999998865432 23455556788999999999887777654 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +. .||++++|++|+++..|
T Consensus 145 ~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~~-~~d~i~~l~~G~i~~~g 222 (277)
T PRK13642 145 QKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-AA-SSDRILVMKAGEIIKEA 222 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH-hCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999875 9999999999985 54 59999999999999999
Q ss_pred Cccchh
Q 003437 282 SPVALP 287 (820)
Q Consensus 282 ~~~~~~ 287 (820)
+++++.
T Consensus 223 ~~~~~~ 228 (277)
T PRK13642 223 APSELF 228 (277)
T ss_pred CHHHHh
Confidence 987764
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=376.16 Aligned_cols=234 Identities=30% Similarity=0.399 Sum_probs=196.8
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+++||++.|..+.... ....+...+++||||++.+||++||+|+||||||||.|+|+|+.+| .+|+|.++|.+
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~-~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~ 354 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLF-VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQD 354 (539)
T ss_pred CceeEeeeeeeeeccccccc-cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcc
Confidence 45699999999997532111 1112346799999999999999999999999999999999999865 68999999987
Q ss_pred CCC-----ccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 003437 125 VTT-----SYMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 125 ~~~-----~~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
++. ...++.+-+||||+ .|.|.+||+++|......... ....+.++++.++++.+||... +.+++|.
T Consensus 355 ~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~----~l~ryP~ 428 (539)
T COG1123 355 LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPE----FLDRYPH 428 (539)
T ss_pred cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHH----HHhcCch
Confidence 321 12345677899987 589999999999998876533 2356677899999999999852 2234556
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
+||||||||++|||||+.+|++|++|||||.||+..+.+|+++|+++.++ |.|.|++|||... +..+||||++|++|+
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~v-V~~i~drv~vm~~G~ 507 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAV-VRYIADRVAVMYDGR 507 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH-HHhhCceEEEEECCe
Confidence 89999999999999999999999999999999999999999999999875 9999999999985 899999999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
||+.|+.+++.+
T Consensus 508 iVE~G~~~~v~~ 519 (539)
T COG1123 508 IVEEGPTEKVFE 519 (539)
T ss_pred EEEeCCHHHHhc
Confidence 999998877753
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=351.59 Aligned_cols=219 Identities=23% Similarity=0.342 Sum_probs=184.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe--
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP-- 124 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~-- 124 (820)
.|+++||++.|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|++
T Consensus 6 ~l~~~~l~~~~~~------------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 71 (258)
T PRK11701 6 LLSVRGLTKLYGP------------RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQ 71 (258)
T ss_pred eEEEeeeEEEcCC------------ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCcccc
Confidence 5999999999853 249999999999999999999999999999999999885 468999999987
Q ss_pred ---CCCcc-------ccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccc
Q 003437 125 ---VTTSY-------MKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYI 191 (820)
Q Consensus 125 ---~~~~~-------~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~i 191 (820)
+.... .++.++|++|++ .+++.+|+.||+.+...... .....+..+++.++++.+++.+ ..++.+
T Consensus 72 ~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK11701 72 LRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDLP 149 (258)
T ss_pred ccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCCC
Confidence 54211 234689999997 36778899999976543211 1122344567889999999974 556555
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEE
Q 003437 192 GNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRII 270 (820)
Q Consensus 192 g~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 270 (820)
..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++.. +..+||+++
T Consensus 150 -----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~-~~~~~d~i~ 223 (258)
T PRK11701 150 -----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLAHRLL 223 (258)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH-HHHhcCEEE
Confidence 469999999999999999999999999999999999999999999999765 8999999999975 777899999
Q ss_pred EEeCCeEEEEcCccchh
Q 003437 271 VLARGRLVYMGSPVALP 287 (820)
Q Consensus 271 lL~~G~iv~~G~~~~~~ 287 (820)
+|++|++++.|+++++.
T Consensus 224 ~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 224 VMKQGRVVESGLTDQVL 240 (258)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999887664
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=340.35 Aligned_cols=196 Identities=35% Similarity=0.594 Sum_probs=166.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceEEEECCEeC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-SLEGSVRIDGKPV 125 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-~~~G~I~i~G~~~ 125 (820)
.+.|+||+|.|+.+. .++.+|+++||++++||+++|+||||||||||+++|+|+.++. +++|+|.++|.++
T Consensus 3 ~~~~~~~~~~~~~~~--------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~ 74 (202)
T cd03233 3 TLSWRNISFTTGKGR--------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY 74 (202)
T ss_pred eEEEEccEEEeccCC--------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEEC
Confidence 489999999997642 2356999999999999999999999999999999999998632 5789999999987
Q ss_pred CCc--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 126 TTS--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 126 ~~~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
... ..++.++|++|++.+++.+||+||+.+..... .++.+ ..|||||
T Consensus 75 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~-----~~LS~Ge 123 (202)
T cd03233 75 KEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFV-----RGISGGE 123 (202)
T ss_pred ccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccch-----hhCCHHH
Confidence 542 34567899999999999999999998764210 22333 4699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.++||++++|++|++++.|
T Consensus 124 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 124 RKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999875 6787777776544578899999999999998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=386.19 Aligned_cols=220 Identities=25% Similarity=0.343 Sum_probs=191.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|.++.
T Consensus 4 ~i~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 69 (501)
T PRK10762 4 LLQLKGIDKAFPG------------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVT 69 (501)
T ss_pred eEEEeeeEEEeCC------------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 4999999999953 249999999999999999999999999999999999985 46899999999875
Q ss_pred Cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 127 TS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 127 ~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
.. ..++.++||+|++.+++.+||+||+.++...+.. ...+.++.++++.++++.+||.+..++.++ .|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG-----ELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCH
Confidence 31 1245689999999999999999999987532210 112344455678999999999988877775 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
||||||+||+||+.+|++|||||||+|||+.++..+.++|++++++|.|||++|||++. +..+||++++|++|+++..|
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~-~~~~~d~i~~l~~G~i~~~~ 223 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKE-IFEICDDVTVFRDGQFIAER 223 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999998789999999999974 78899999999999999999
Q ss_pred Cccch
Q 003437 282 SPVAL 286 (820)
Q Consensus 282 ~~~~~ 286 (820)
+++++
T Consensus 224 ~~~~~ 228 (501)
T PRK10762 224 EVADL 228 (501)
T ss_pred CcCcC
Confidence 88765
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=352.91 Aligned_cols=220 Identities=26% Similarity=0.368 Sum_probs=183.5
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--C-CCCceEEEECC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIA--Q-GSLEGSVRIDG 122 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~--~-~~~~G~I~i~G 122 (820)
..|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+.. + .+++|+|.++|
T Consensus 20 ~~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 20 HILEVKDLSIYYGE------------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred ceEEEEEEEEEeCC------------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 45999999999953 249999999999999999999999999999999999753 2 24789999999
Q ss_pred EeCCCc-----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 003437 123 KPVTTS-----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYIGN 193 (820)
Q Consensus 123 ~~~~~~-----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig~ 193 (820)
+++... ..++.++|++|++.+++. ||.||+.+...... ........+.+.++++.+++.+ ..++.+
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 162 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSSA-- 162 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcCc--
Confidence 987531 235678999999988885 99999988754321 1122334556788899998853 234444
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 194 ~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.++||++++|+
T Consensus 163 ---~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~-~~~~~d~v~~l~ 237 (268)
T PRK14248 163 ---LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQ-ALRVSDRTAFFL 237 (268)
T ss_pred ---ccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHH-HHHhCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999965 6899999999974 788999999999
Q ss_pred CCeEEEEcCccchh
Q 003437 274 RGRLVYMGSPVALP 287 (820)
Q Consensus 274 ~G~iv~~G~~~~~~ 287 (820)
+|++++.|+++++.
T Consensus 238 ~G~i~~~~~~~~~~ 251 (268)
T PRK14248 238 NGDLVEYDQTEQIF 251 (268)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999887653
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=356.86 Aligned_cols=222 Identities=27% Similarity=0.406 Sum_probs=184.9
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC------CceEEEEC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS------LEGSVRID 121 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~------~~G~I~i~ 121 (820)
|+++||+++|.+ +.+|+|+||+|++||+++|+||||||||||+|+|+|++++.. .+|+|.++
T Consensus 2 l~~~nl~~~~~~------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~ 69 (272)
T PRK13547 2 LTADHLHVARRH------------RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLN 69 (272)
T ss_pred eEEEEEEEEECC------------EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEEC
Confidence 889999999853 249999999999999999999999999999999999985420 27999999
Q ss_pred CEeCCCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 003437 122 GKPVTTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRL-PPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 122 G~~~~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
|.++... ..++.++|++|++.+++.+||+||+.+...... .......+..+++.++++.+||.+..++.+.
T Consensus 70 g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 144 (272)
T PRK13547 70 GEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVT----- 144 (272)
T ss_pred CEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcc-----
Confidence 9987531 234567999999876666899999987632110 0011113345678899999999877776654
Q ss_pred CCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcC
Q 003437 198 GVSGGERRRVSIGIDII---------HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLD 267 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~---------~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D 267 (820)
.|||||||||+||++|+ .+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|+++. +.++||
T Consensus 145 ~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~-~~~~~d 223 (272)
T PRK13547 145 TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL-AARHAD 223 (272)
T ss_pred cCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhCC
Confidence 69999999999999999 599999999999999999999999999999876 8999999999974 778999
Q ss_pred EEEEEeCCeEEEEcCccchh
Q 003437 268 RIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 268 ~v~lL~~G~iv~~G~~~~~~ 287 (820)
++++|++|++++.|+++++.
T Consensus 224 ~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 224 RIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred EEEEEECCeEEEecCHHHHc
Confidence 99999999999999877653
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=354.61 Aligned_cols=224 Identities=23% Similarity=0.380 Sum_probs=187.7
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDG 122 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G 122 (820)
..|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|++++. +.+|+|.++|
T Consensus 20 ~~l~i~nl~~~~~~------------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 20 PAMAAVNLTLGFAG------------KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred cEEEEeeEEEEECC------------EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 36999999999953 24999999999999999999999999999999999998642 4689999999
Q ss_pred EeCCCc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 123 KPVTTS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 123 ~~~~~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
.++... ..++.++|++|++.+++ .||+||+.+...... ..+.++..+++.++++.+||.+..++.. +..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCccc
Confidence 987531 24567899999998888 799999988754321 1244455567788999999975332221 123457
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|+++. +.++||++++|++|+++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~-~~~~~dri~~l~~G~i~ 241 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQ-AARISDRAALFFDGRLV 241 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999976 5899999999974 78899999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
..|+++++.
T Consensus 242 ~~g~~~~~~ 250 (276)
T PRK14271 242 EEGPTEQLF 250 (276)
T ss_pred EeCCHHHHH
Confidence 999987764
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=349.92 Aligned_cols=224 Identities=23% Similarity=0.405 Sum_probs=183.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--C-CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ--G-SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~--~-~~~G~I~i~G~ 123 (820)
.-+++||++.|++ +.+|+|+||+|.+||+++|+||||||||||+++|+|+..+ . +++|+|.++|+
T Consensus 5 ~~~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 5 HASVKNLNLWYGS------------KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEEeeeEEEEECC------------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 3578999999853 2499999999999999999999999999999999998752 1 36899999999
Q ss_pred eCCCc-----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 124 PVTTS-----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 124 ~~~~~-----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
++... ..++.++|++|++.+++. ||.||+.+....+. ......+..+.+.++++.+||.+...+.+ +..+..
T Consensus 73 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 149 (251)
T PRK14244 73 DVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFE 149 (251)
T ss_pred ehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhh
Confidence 87421 235678999999988886 99999988754321 11123344567889999999965321111 123457
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.+ |+|||+++|+++. +.++||++++|++|+++
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~-~~~~~d~i~~l~~G~i~ 227 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMKQ-AKKVSDRVAFFQSGRIV 227 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHH-HHhhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999964 8999999999984 77889999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
+.|+++++.
T Consensus 228 ~~~~~~~~~ 236 (251)
T PRK14244 228 EYNTTQEIF 236 (251)
T ss_pred EeCCHHHHh
Confidence 999877653
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=349.04 Aligned_cols=223 Identities=24% Similarity=0.362 Sum_probs=184.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||+++|.+ +.+|+|+|++|.+||+++|+||||||||||+++|+|++++. +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~~------------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 71 (251)
T PRK14249 4 KIKIRGVNFFYHK------------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNE 71 (251)
T ss_pred eEEEEEEEEEECC------------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCE
Confidence 4999999999853 24999999999999999999999999999999999998642 23699999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
++.. ...++.++|++|++.+++. ||+||+.+....+.. ...++..++++++++.++|.+...... +..+..
T Consensus 72 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~ 147 (251)
T PRK14249 72 NIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNL-HKSGLA 147 (251)
T ss_pred EccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHh-hCCccc
Confidence 8742 1235679999999998885 999999987643211 112233456788888888754221111 233457
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.++|+++. ++.|||+++|+++. +.++||++++|++|+++
T Consensus 148 LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~-~~~~~d~i~~l~~G~i~ 225 (251)
T PRK14249 148 LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQ-AARASDWTGFLLTGDLV 225 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH-HHhhCCEEEEEeCCeEE
Confidence 99999999999999999999999999999999999999999999995 58999999999985 77889999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
+.|+++++.
T Consensus 226 ~~~~~~~~~ 234 (251)
T PRK14249 226 EYGRTGEIF 234 (251)
T ss_pred EeCCHHHHH
Confidence 999887663
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=327.59 Aligned_cols=219 Identities=27% Similarity=0.452 Sum_probs=194.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||.++|+. ..+|++||++.+.|+++.|||.|||||||+|+||.-+.. |..|.|.+||+.+.
T Consensus 6 ~l~v~dlHK~~G~------------~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~ 71 (256)
T COG4598 6 ALEVEDLHKRYGE------------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIR 71 (256)
T ss_pred ceehhHHHhhccc------------chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEE
Confidence 4899999999854 459999999999999999999999999999999998764 56899999999874
Q ss_pred Cc----------------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 003437 127 TS----------------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY 190 (820)
Q Consensus 127 ~~----------------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 190 (820)
.. ..|...|+|||+.+|++++||.||+.-+...- .+.++.+..++++.+|..+||.+..|.+
T Consensus 72 ~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~Y 149 (256)
T COG4598 72 LKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAY 149 (256)
T ss_pred eeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcC
Confidence 11 12344689999999999999999997654321 1467888999999999999999988866
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEE
Q 003437 191 IGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRII 270 (820)
Q Consensus 191 ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 270 (820)
.. .|||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.+.. +.+...+|+
T Consensus 150 P~-----~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~ 223 (256)
T COG4598 150 PA-----HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVI 223 (256)
T ss_pred cc-----ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheE
Confidence 54 699999999999999999999999999999999999999999999999999999999999986 788899999
Q ss_pred EEeCCeEEEEcCccchh
Q 003437 271 VLARGRLVYMGSPVALP 287 (820)
Q Consensus 271 lL~~G~iv~~G~~~~~~ 287 (820)
+|++|.|-++|+|+++.
T Consensus 224 fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 224 FLHQGKIEEEGPPEQVF 240 (256)
T ss_pred EeecceecccCChHHHh
Confidence 99999999999999875
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=386.35 Aligned_cols=221 Identities=20% Similarity=0.311 Sum_probs=190.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 5 ~l~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 70 (510)
T PRK09700 5 YISMAGIGKSFGP------------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINYN 70 (510)
T ss_pred eEEEeeeEEEcCC------------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEECC
Confidence 5999999999953 249999999999999999999999999999999999985 46899999999875
Q ss_pred Ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcC-CCC---CCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 127 TSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRL-PPS---ISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 127 ~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~-~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
... .++.++||+|++.+++.+||+||+.++..... ... .+.++..+++.++++.+||.+..++.++ +
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 145 (510)
T PRK09700 71 KLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA-----N 145 (510)
T ss_pred CCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh-----h
Confidence 421 23568999999999999999999987542110 001 1234456788999999999987787775 6
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||||+||++|+.+|++|||||||+|||+.++..++++|++++++|+|||++||+++. +..+||++++|++|+++
T Consensus 146 LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~-~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 146 LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAE-IRRICDRYTVMKDGSSV 224 (510)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEe
Confidence 99999999999999999999999999999999999999999999998889999999999974 77899999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
+.|+++++.
T Consensus 225 ~~g~~~~~~ 233 (510)
T PRK09700 225 CSGMVSDVS 233 (510)
T ss_pred eecchhhCC
Confidence 999987753
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=348.93 Aligned_cols=223 Identities=21% Similarity=0.336 Sum_probs=184.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---CceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS---LEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~---~~G~I~i~G~ 123 (820)
.|+++||++.|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+..+.+ ++|+|.++|+
T Consensus 6 ~i~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 73 (253)
T PRK14261 6 ILSTKNLNLWYGE------------KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGE 73 (253)
T ss_pred eEEEeeeEEEECC------------eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 5999999999853 249999999999999999999999999999999999864322 4899999999
Q ss_pred eCCCc-----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 124 PVTTS-----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 124 ~~~~~-----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
++... ..++.++|++|++.+++. ||+||+.+....+. .....+.++.+.++++.+++.+...... +..++.
T Consensus 74 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~ 149 (253)
T PRK14261 74 NIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRL-HDSALS 149 (253)
T ss_pred EccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHh-hcChhh
Confidence 87531 235668999999998885 99999998765431 1123344567888899998853211111 223457
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++.. +.++||++++|++|+++
T Consensus 150 LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~-~~~~~d~v~~l~~G~i~ 227 (253)
T PRK14261 150 LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQ-AARVSDYTGFMYLGKLI 227 (253)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHH-HHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999976 5899999999975 77899999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
..|+++++.
T Consensus 228 ~~g~~~~~~ 236 (253)
T PRK14261 228 EFDKTTQIF 236 (253)
T ss_pred EcCCHHHHH
Confidence 999987663
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=349.88 Aligned_cols=217 Identities=25% Similarity=0.402 Sum_probs=182.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceEEEECCEe
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG--SLEGSVRIDGKP 124 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~--~~~G~I~i~G~~ 124 (820)
.|+++||+++| + +.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +++|+|.++|++
T Consensus 4 ~l~~~~l~~~~-~------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~ 70 (254)
T PRK10418 4 QIELRNIALQA-A------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKP 70 (254)
T ss_pred EEEEeCeEEEe-c------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCee
Confidence 59999999998 2 14899999999999999999999999999999999998541 168999999998
Q ss_pred CCCccc-cceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCCCCCC
Q 003437 125 VTTSYM-KMVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS---ATHTYIGNEGRRG 198 (820)
Q Consensus 125 ~~~~~~-~~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~ig~~~~~~ 198 (820)
+..... ++.++||+|++. +.+.+|+.+++.+.+... .... ..+++.++++.+||.+ ..++.+ ..
T Consensus 71 i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~-----~~ 140 (254)
T PRK10418 71 VAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKPA--DDATLTAALEAVGLENAARVLKLYP-----FE 140 (254)
T ss_pred ccccccccceEEEEecCCccccCccccHHHHHHHHHHHc---CCCh--HHHHHHHHHHHcCCCChhhhhhcCC-----cc
Confidence 854322 356899999974 456679999987754332 1122 2367889999999976 345544 47
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|+++. +.++||++++|++|++
T Consensus 141 LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~-~~~~~d~v~~l~~G~i 219 (254)
T PRK10418 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGV-VARLADDVAVMSHGRI 219 (254)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999764 8999999999985 7788999999999999
Q ss_pred EEEcCccchh
Q 003437 278 VYMGSPVALP 287 (820)
Q Consensus 278 v~~G~~~~~~ 287 (820)
++.|+++++.
T Consensus 220 ~~~~~~~~~~ 229 (254)
T PRK10418 220 VEQGDVETLF 229 (254)
T ss_pred EEecCHHHHh
Confidence 9999987764
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=341.82 Aligned_cols=205 Identities=34% Similarity=0.503 Sum_probs=176.2
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
+++ ||+++|+++ .+ |+|+++++ |+++|+||||||||||+++|+|+++ +++|+|.++|.++..
T Consensus 2 ~~~-~l~~~~~~~------------~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 63 (214)
T cd03297 2 LCV-DIEKRLPDF------------TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFD 63 (214)
T ss_pred cee-eeeEecCCe------------ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeccc
Confidence 345 899998642 24 99999999 9999999999999999999999985 468999999998742
Q ss_pred c-------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 128 S-------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 128 ~-------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
. ..++.++|++|++.+++.+|++||+.+..... .....++++.++++.+||.+..++.+. .||
T Consensus 64 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 133 (214)
T cd03297 64 SRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPA-----QLS 133 (214)
T ss_pred ccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCcc-----cCC
Confidence 1 23457899999999999999999998865321 233445678899999999877776654 699
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +..+||++++|++|+++.
T Consensus 134 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 134 GGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSE-AEYLADRIVVMEDGRLQY 212 (214)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHH-HHHhcCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999875 8999999999974 778999999999999987
Q ss_pred Ec
Q 003437 280 MG 281 (820)
Q Consensus 280 ~G 281 (820)
.|
T Consensus 213 ~g 214 (214)
T cd03297 213 IG 214 (214)
T ss_pred cC
Confidence 65
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=346.50 Aligned_cols=222 Identities=26% Similarity=0.355 Sum_probs=183.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|++ +.+|+|+|+++++||+++|+|+||||||||+++|+|+....+++|+|.++|.++.
T Consensus 7 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~ 74 (252)
T CHL00131 7 ILEIKNLHASVNE------------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESIL 74 (252)
T ss_pred eEEEEeEEEEeCC------------EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcc
Confidence 5999999999853 2499999999999999999999999999999999997322357899999999875
Q ss_pred Cc---cccc-eEEEEccCCCCCCCCCHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 003437 127 TS---YMKM-VSSYVMQDDQLFPMLTVFETFMFAAEVRLP----PSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRR 197 (820)
Q Consensus 127 ~~---~~~~-~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~ 197 (820)
.. ..++ .++|++|++.+++.+|+.+++.+....... ......+..+++.++++.+||. +..++.++ .
T Consensus 75 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 150 (252)
T CHL00131 75 DLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----E 150 (252)
T ss_pred cCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----c
Confidence 32 1222 478999999999999999999876432110 0112223456788999999997 35555553 2
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhh-cCEEEEEeCCe
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQML-LDRIIVLARGR 276 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~lL~~G~ 276 (820)
+|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++|+|||++||+++. +..+ ||++++|++|+
T Consensus 151 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~G~ 229 (252)
T CHL00131 151 GFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQNGK 229 (252)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeCCE
Confidence 499999999999999999999999999999999999999999999998779999999999875 5555 89999999999
Q ss_pred EEEEcCccc
Q 003437 277 LVYMGSPVA 285 (820)
Q Consensus 277 iv~~G~~~~ 285 (820)
+++.|+++.
T Consensus 230 i~~~~~~~~ 238 (252)
T CHL00131 230 IIKTGDAEL 238 (252)
T ss_pred EEEecChhh
Confidence 999998873
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=384.08 Aligned_cols=214 Identities=26% Similarity=0.412 Sum_probs=188.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 11 ~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 76 (510)
T PRK15439 11 LLCARSISKQYSG------------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPCA 76 (510)
T ss_pred eEEEEeEEEEeCC------------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5999999999953 249999999999999999999999999999999999985 46899999999875
Q ss_pred Ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 TSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
... .++.++||+|++.+++.+||+||+.+.... ..+.++++.++++.+||.+..++.++ .||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 144 (510)
T PRK15439 77 RLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAG-----SLEVA 144 (510)
T ss_pred CCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChh-----hCCHH
Confidence 321 234589999999999999999999885321 12345678899999999887777765 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+||++|+.+|++|||||||+|||+.++..+.++|++++++|+|||++||+++. +..+||++++|++|++++.|+
T Consensus 145 ~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~i~~l~~G~i~~~g~ 223 (510)
T PRK15439 145 DRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPE-IRQLADRISVMRDGTIALSGK 223 (510)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999999998889999999999975 778999999999999999998
Q ss_pred ccchh
Q 003437 283 PVALP 287 (820)
Q Consensus 283 ~~~~~ 287 (820)
++++.
T Consensus 224 ~~~~~ 228 (510)
T PRK15439 224 TADLS 228 (510)
T ss_pred hHHcC
Confidence 87654
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=350.35 Aligned_cols=219 Identities=24% Similarity=0.403 Sum_probs=184.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-C--CceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-S--LEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-~--~~G~I~i~G~ 123 (820)
.|+++||++.|++ +.+|+|+|+++++||+++|+|+||||||||+|+|+|++++. + ++|+|.++|+
T Consensus 7 ~l~~~~l~~~~~~------------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~ 74 (259)
T PRK14260 7 AIKVKDLSFYYNT------------SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQ 74 (259)
T ss_pred eEEEEEEEEEECC------------eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCE
Confidence 4999999999853 24999999999999999999999999999999999987643 2 5899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYIGNE 194 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig~~ 194 (820)
++.. ...++.++|++|++.+++ +||+||+.+....+. ..++.+..+++.++++.+|+.+ ..++.
T Consensus 75 ~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~---- 147 (259)
T PRK14260 75 NIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS---- 147 (259)
T ss_pred eccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC----
Confidence 8742 123457899999999888 799999988754331 1233444567888999999843 33333
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe-
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA- 273 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~- 273 (820)
+..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++. +.++||++++|+
T Consensus 148 -~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~-i~~~~d~i~~l~~ 224 (259)
T PRK14260 148 -ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQ-ATRVSDFTAFFST 224 (259)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhcCeEEEEec
Confidence 457999999999999999999999999999999999999999999999975 6999999999985 888999999998
Q ss_pred ----CCeEEEEcCccchh
Q 003437 274 ----RGRLVYMGSPVALP 287 (820)
Q Consensus 274 ----~G~iv~~G~~~~~~ 287 (820)
+|++++.|+++++.
T Consensus 225 ~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 225 DESRIGQMVEFGVTTQIF 242 (259)
T ss_pred cCCCCceEEEeCCHHHHh
Confidence 59999999988763
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=349.95 Aligned_cols=225 Identities=24% Similarity=0.374 Sum_probs=186.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||+++|.+ ..+|+|+||++++||+++|+|+||||||||+++|+|+.++. ..+|+|.++|+
T Consensus 7 ~l~~~nl~~~~~~------------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~ 74 (261)
T PRK14258 7 AIKVNNLSFYYDT------------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQ 74 (261)
T ss_pred eEEEeeEEEEeCC------------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCE
Confidence 4999999999853 24899999999999999999999999999999999998642 14799999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
++.. ...++.++|++|++.+++ +||.||+.+...... ..+..+..+++.++++.+++.+..+... +..+..
T Consensus 75 ~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 150 (261)
T PRK14258 75 NIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKI-HKSALD 150 (261)
T ss_pred EhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHh-cCCccc
Confidence 8631 123566899999998888 799999988654321 1133344567889999999854322111 223457
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeC---
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLAR--- 274 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~--- 274 (820)
||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||++.. +.++||++++|++
T Consensus 151 LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~-i~~~~d~i~~l~~~~~ 229 (261)
T PRK14258 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQ-VSRLSDFTAFFKGNEN 229 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHH-HHHhcCEEEEEccCCC
Confidence 999999999999999999999999999999999999999999999975 58999999999974 8889999999999
Q ss_pred --CeEEEEcCccchhh
Q 003437 275 --GRLVYMGSPVALPA 288 (820)
Q Consensus 275 --G~iv~~G~~~~~~~ 288 (820)
|++++.|+++++..
T Consensus 230 ~~G~i~~~~~~~~~~~ 245 (261)
T PRK14258 230 RIGQLVEFGLTKKIFN 245 (261)
T ss_pred cCceEEEeCCHHHHHh
Confidence 99999999988743
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=347.92 Aligned_cols=219 Identities=25% Similarity=0.395 Sum_probs=183.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--C-CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ--G-SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~--~-~~~G~I~i~G~ 123 (820)
.|+++||+++|+. +.+|+++|++|++||+++|+||||||||||+|+|+|++.+ . +.+|+|.++|+
T Consensus 4 ~l~~~~l~~~~~~------------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~ 71 (251)
T PRK14251 4 IISAKDVHLSYGN------------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQ 71 (251)
T ss_pred eEEEEeeEEEECC------------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCE
Confidence 4899999999953 2499999999999999999999999999999999999752 1 36899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYIGNE 194 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig~~ 194 (820)
++.. ...++.++|++|++.+++ .||+||+.+...... ....+...++++++++.+++.. ..++.
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 144 (251)
T PRK14251 72 NIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN---- 144 (251)
T ss_pred EcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC----
Confidence 8742 123566899999998886 699999988654321 1123334467888999999852 23433
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+.+||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++. +.++||++++|++
T Consensus 145 -~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~-~~~~~d~i~~l~~ 221 (251)
T PRK14251 145 -AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQ-AGRISDQTAFLMN 221 (251)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHH-HHhhcCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999964 6899999999984 7888999999999
Q ss_pred CeEEEEcCccchh
Q 003437 275 GRLVYMGSPVALP 287 (820)
Q Consensus 275 G~iv~~G~~~~~~ 287 (820)
|+++..|+++++.
T Consensus 222 G~i~~~~~~~~~~ 234 (251)
T PRK14251 222 GDLIEAGPTEEMF 234 (251)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999887653
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=346.11 Aligned_cols=201 Identities=31% Similarity=0.487 Sum_probs=173.8
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHH
Q 003437 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFM 154 (820)
Q Consensus 75 L~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~ 154 (820)
|+|+|++|++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++.... ...+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 578999999999999999999999999999999985 46899999999876422 22489999999999999999998
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 003437 155 FAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSA 234 (820)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~ 234 (820)
+......+ ...+.+..+++.++++.+||++..++.++ .|||||||||+||++|+.+|++|||||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRPG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 86431111 23445556678999999999887777665 6999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccch
Q 003437 235 YSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286 (820)
Q Consensus 235 ~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 286 (820)
..+.+.|++++++ |+|||++||+++. +.++||++++|++|+++..|+..++
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~~-~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVDE-ALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEeCCcEecccCceec
Confidence 9999999999865 8999999999974 7889999999999999998876544
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=354.28 Aligned_cols=221 Identities=22% Similarity=0.357 Sum_probs=184.5
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CC-CCceEEEEC
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIA--QG-SLEGSVRID 121 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~--~~-~~~G~I~i~ 121 (820)
...|+++||+++|++ +.+|+|+|++|++||+++|+||||||||||+++|+|+.. +. +++|+|.++
T Consensus 37 ~~~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~ 104 (286)
T PRK14275 37 KPHVVAKNFSIYYGE------------FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFD 104 (286)
T ss_pred ceEEEEeeeEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEEC
Confidence 345999999999853 249999999999999999999999999999999999853 21 378999999
Q ss_pred CEeCCCc-----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccc
Q 003437 122 GKPVTTS-----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR----SATHTYIG 192 (820)
Q Consensus 122 G~~~~~~-----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig 192 (820)
|+++... ..++.++|++|++.+++. ||.||+.+....+. ..+....++++.++++.+|+. +..++.+
T Consensus 105 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~- 180 (286)
T PRK14275 105 GEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKNA- 180 (286)
T ss_pred CEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCCh-
Confidence 9987421 235678999999988885 99999998754321 112333456788889999874 3334443
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 193 ~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|+++. +.++||++++|
T Consensus 181 ----~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~-~~~~~d~i~~L 254 (286)
T PRK14275 181 ----LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQ-ASRVSDYTMFF 254 (286)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHH-HHHhCCEEEEE
Confidence 57999999999999999999999999999999999999999999999975 6899999999985 77899999999
Q ss_pred eCCeEEEEcCccchh
Q 003437 273 ARGRLVYMGSPVALP 287 (820)
Q Consensus 273 ~~G~iv~~G~~~~~~ 287 (820)
++|+++..|+++++.
T Consensus 255 ~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 255 YEGVLVEHAPTAQLF 269 (286)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987764
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=334.79 Aligned_cols=189 Identities=46% Similarity=0.747 Sum_probs=165.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|+++.|+... .++.+|+|+|+++++||+++|+||||||||||+++|+|+....+++|+|.++|+++.
T Consensus 3 ~l~~~~l~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~ 74 (192)
T cd03232 3 VLTWKNLNYTVPVKG--------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD 74 (192)
T ss_pred EEEEeeeEEEecCCC--------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH
Confidence 489999999996321 113599999999999999999999999999999999998643457899999999875
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
...++.++|++|++.+++.+||+||+.+...+ + .||||||||
T Consensus 75 -~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~qr 116 (192)
T cd03232 75 -KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRKR 116 (192)
T ss_pred -HHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhHH
Confidence 33456789999999999999999999875311 0 499999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC-CeEEEEc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR-GRLVYMG 281 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~-G~iv~~G 281 (820)
|+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++.++...||++++|++ |++++.|
T Consensus 117 v~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 117 LTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999877999999999997446778999999999 9999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=350.63 Aligned_cols=224 Identities=26% Similarity=0.401 Sum_probs=185.5
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC---CCCceEEEECC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ---GSLEGSVRIDG 122 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~---~~~~G~I~i~G 122 (820)
..|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|++.+ .+++|+|.++|
T Consensus 24 ~~l~~~nl~~~~~~------------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g 91 (272)
T PRK14236 24 TALEVRNLNLFYGD------------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG 91 (272)
T ss_pred cEEEEEEEEEEECC------------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC
Confidence 35999999999953 2499999999999999999999999999999999999753 14689999999
Q ss_pred EeCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 003437 123 KPVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 123 ~~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
.++.. ...++.++|++|++.+++. ||+||+.+...... ...+++.+++++++++.+++.+...... +..+.
T Consensus 92 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 167 (272)
T PRK14236 92 QNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRL-HENAF 167 (272)
T ss_pred EECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcc
Confidence 98753 1235678999999988886 99999988754321 1123334567888999999864211111 12345
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.++||++++|++|++
T Consensus 168 ~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~-~~~~~d~i~~l~~G~i 245 (272)
T PRK14236 168 GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQ-AARVSDYTAFMYMGKL 245 (272)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHH-HHhhCCEEEEEECCEE
Confidence 7999999999999999999999999999999999999999999999976 7899999999974 7789999999999999
Q ss_pred EEEcCccchh
Q 003437 278 VYMGSPVALP 287 (820)
Q Consensus 278 v~~G~~~~~~ 287 (820)
+..|+++++.
T Consensus 246 ~~~g~~~~~~ 255 (272)
T PRK14236 246 VEYGDTDTLF 255 (272)
T ss_pred EecCCHHHHh
Confidence 9999877653
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=398.00 Aligned_cols=220 Identities=31% Similarity=0.502 Sum_probs=187.1
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..++++||+|+|... +..+|+|+|++|+|||.+||+|+||||||||+|+|+|++. |.+|+|++||.++
T Consensus 470 g~I~~~nvsf~y~~~----------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~dg~dl 537 (709)
T COG2274 470 GEIEFENVSFRYGPD----------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDGVDL 537 (709)
T ss_pred ceEEEEEEEEEeCCC----------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEeH
Confidence 359999999999753 2369999999999999999999999999999999999985 4689999999998
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCCCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKR-----VYELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
.. ...|+.+|||+||+.+|.. |++||+.++.. ..+.++..+. +.+.++ .++...||.+|+.+ .
T Consensus 538 ~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p-----~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~E~G-~ 608 (709)
T COG2274 538 NDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNP-----EATDEEIIEAAQLAGAHEFIE--NLPMGYDTPVGEGG-A 608 (709)
T ss_pred HhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHH--hcccccccccccCC-C
Confidence 64 4578899999999999987 99999998742 2333332221 122222 45667889998644 5
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
+||||||||++|||||+++|+||+||||||+||+.+...|.+.|.++.. |+|+|+++|+++ ..+.||||++|++|++
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~~Gki 685 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLDQGKI 685 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEEEEccCCce
Confidence 7999999999999999999999999999999999999999999999864 799999999997 4567999999999999
Q ss_pred EEEcCccchhhh
Q 003437 278 VYMGSPVALPAH 289 (820)
Q Consensus 278 v~~G~~~~~~~~ 289 (820)
+.+|+.+++...
T Consensus 686 v~~gs~~ell~~ 697 (709)
T COG2274 686 VEQGSHEELLAQ 697 (709)
T ss_pred eccCCHHHHHHh
Confidence 999999998764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=382.29 Aligned_cols=221 Identities=25% Similarity=0.409 Sum_probs=188.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|++++.+++|+|.++|+++..
T Consensus 2 l~i~~l~~~~~~------------~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~ 69 (500)
T TIGR02633 2 LEMKGIVKTFGG------------VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKA 69 (500)
T ss_pred EEEEeEEEEeCC------------eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCC
Confidence 789999999953 24999999999999999999999999999999999988543468999999998754
Q ss_pred cc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCCh
Q 003437 128 SY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP-SISRDEKKKRVYELLDQLGLRSAT-HTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-~~~ig~~~~~~LSG 201 (820)
.. .++.++||+|++.+++.+||.||+.+........ ....++..++++++++.+||.+.. ++.++ .|||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSg 144 (500)
T TIGR02633 70 SNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVG-----DYGG 144 (500)
T ss_pred CCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchh-----hCCH
Confidence 21 2356899999999999999999998865432110 123344556789999999998654 44454 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +..+||++++|++|+++..|
T Consensus 145 G~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~-~~~~~d~i~~l~~G~i~~~~ 223 (500)
T TIGR02633 145 GQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNE-VKAVCDTICVIRDGQHVATK 223 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH-HHHhCCEEEEEeCCeEeeec
Confidence 99999999999999999999999999999999999999999998889999999999974 78899999999999999999
Q ss_pred Cccch
Q 003437 282 SPVAL 286 (820)
Q Consensus 282 ~~~~~ 286 (820)
+++++
T Consensus 224 ~~~~~ 228 (500)
T TIGR02633 224 DMSTM 228 (500)
T ss_pred CcccC
Confidence 87654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=358.52 Aligned_cols=226 Identities=23% Similarity=0.390 Sum_probs=189.2
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC---CCCceEEEECC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ---GSLEGSVRIDG 122 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~---~~~~G~I~i~G 122 (820)
..|+++|++++|... .+.+|+|+||+|++||+++|+||||||||||+++|+|+..+ .+++|+|.++|
T Consensus 79 ~~i~~~nls~~y~~~----------~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 79 NVFEIRNFNFWYMNR----------TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred ceEEEEeeEEEecCC----------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 469999999999531 23599999999999999999999999999999999998743 24689999999
Q ss_pred EeCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHHHcCCCccccccccCCCC
Q 003437 123 KPVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISR-DEKKKRVYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 123 ~~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
+++.. ...++.++||||++.+++ .|++||+.|+.... ..+. +...+.+.++++.++|.+..++.++ +.+
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~~ 223 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLD-KAG 223 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhh-CCc
Confidence 99852 134667999999999886 69999999875432 1222 2234557888999988654444443 345
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..|||||||||+|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||++||++.. +.++||||++|++|+
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~-i~~~~Driivl~~G~ 301 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQ-AQRISDETVFFYQGW 301 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhCCEEEEEECCE
Confidence 68999999999999999999999999999999999999999999999876 6999999999985 778899999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
+++.|+++++..
T Consensus 302 i~e~g~~~~l~~ 313 (329)
T PRK14257 302 IEEAGETKTIFI 313 (329)
T ss_pred EEEeCCHHHHhc
Confidence 999999988753
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=345.92 Aligned_cols=219 Identities=22% Similarity=0.341 Sum_probs=181.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---CceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS---LEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~---~~G~I~i~G~ 123 (820)
.|+++||++.|+. +.+|+|+|+++++||+++|+||||||||||+++|+|+....+ ++|+|.++|+
T Consensus 5 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 72 (252)
T PRK14255 5 IITSSDVHLFYGK------------FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQ 72 (252)
T ss_pred eEEEEeEEEEECC------------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCE
Confidence 4999999999853 249999999999999999999999999999999999864212 4899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYIGNE 194 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig~~ 194 (820)
++.. ...++.++|++|++.+++ .||.||+.+....+.. ...+...+++.+.++.+++.. ..++.
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~---- 145 (252)
T PRK14255 73 NIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES---- 145 (252)
T ss_pred EcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC----
Confidence 8742 123567899999998888 6999999987543311 122233456777888888742 23333
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.++||++++|++
T Consensus 146 -~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~-~~~~~d~i~~l~~ 222 (252)
T PRK14255 146 -ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQ-ASRISDKTAFFLT 222 (252)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHH-HHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999976 5899999999974 7789999999999
Q ss_pred CeEEEEcCccchh
Q 003437 275 GRLVYMGSPVALP 287 (820)
Q Consensus 275 G~iv~~G~~~~~~ 287 (820)
|+++..|++.++.
T Consensus 223 G~i~~~~~~~~~~ 235 (252)
T PRK14255 223 GNLIEFADTKQMF 235 (252)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999887664
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=351.83 Aligned_cols=223 Identities=22% Similarity=0.379 Sum_probs=183.1
Q ss_pred CCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE
Q 003437 44 PGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK 123 (820)
Q Consensus 44 ~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~ 123 (820)
+...|+++||+++|+++ +.+|+|+|++|++||+++|+||||||||||+|+|+|+++ +++|+|.++|+
T Consensus 3 ~~~~l~~~~l~~~~~~~-----------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~ 69 (272)
T PRK15056 3 QQAGIVVNDVTVTWRNG-----------HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQ 69 (272)
T ss_pred hhceEEEEeEEEEecCC-----------cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCE
Confidence 34569999999999521 349999999999999999999999999999999999885 46899999999
Q ss_pred eCCCccccceEEEEccCCCCC--CCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 124 PVTTSYMKMVSSYVMQDDQLF--PMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 124 ~~~~~~~~~~~gyv~Q~~~l~--~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
++.....++.++|++|++.+. ...+++|++.++...... .........+++.++++.+||.+..++.++ .||
T Consensus 70 ~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS 144 (272)
T PRK15056 70 PTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG-----ELS 144 (272)
T ss_pred EhHHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc-----cCC
Confidence 875332234689999997642 234788988654211000 001122345567889999999888777765 699
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+++. +.++||+++++ +|++++.
T Consensus 145 gG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~-~~~~~d~v~~~-~G~i~~~ 222 (272)
T PRK15056 145 GGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGS-VTEFCDYTVMV-KGTVLAS 222 (272)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEE-CCEEEee
Confidence 999999999999999999999999999999999999999999998789999999999974 77899999877 8999999
Q ss_pred cCccch
Q 003437 281 GSPVAL 286 (820)
Q Consensus 281 G~~~~~ 286 (820)
|+++++
T Consensus 223 g~~~~~ 228 (272)
T PRK15056 223 GPTETT 228 (272)
T ss_pred cCHHhc
Confidence 988765
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=349.89 Aligned_cols=219 Identities=21% Similarity=0.342 Sum_probs=181.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--C-CCCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIA--Q-GSLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~--~-~~~~G~I~i~G~ 123 (820)
.|+++||++.|++ +.+|+|+|++|++||+++|+|+||||||||+++|+|++. + .+++|+|.++|+
T Consensus 24 ~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~ 91 (271)
T PRK14238 24 VFDTQNLNLWYGE------------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQ 91 (271)
T ss_pred EEEEeeeEEEECC------------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCE
Confidence 5999999999853 248999999999999999999999999999999999875 1 147899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR----SATHTYIGNE 194 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~ 194 (820)
++.. ...++.++|++|++.+++. ||+||+.++...+. ..+.+..++.+.++++.+++. +..+..
T Consensus 92 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~---- 164 (271)
T PRK14238 92 NIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN---- 164 (271)
T ss_pred EcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC----
Confidence 8742 1235678999999988875 99999998754321 112223345677788877653 233333
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++. +.++||++++|++
T Consensus 165 -~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~-i~~~~d~i~~l~~ 241 (271)
T PRK14238 165 -AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQ-AARISDKTAFFLN 241 (271)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHH-HHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999976 7999999999974 7789999999999
Q ss_pred CeEEEEcCccchh
Q 003437 275 GRLVYMGSPVALP 287 (820)
Q Consensus 275 G~iv~~G~~~~~~ 287 (820)
|++++.|+++++.
T Consensus 242 G~i~~~g~~~~~~ 254 (271)
T PRK14238 242 GYVNEYDDTDKIF 254 (271)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999887653
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=350.44 Aligned_cols=220 Identities=23% Similarity=0.318 Sum_probs=183.2
Q ss_pred CCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEE
Q 003437 44 PGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRI 120 (820)
Q Consensus 44 ~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i 120 (820)
++..|+++||++.|++ +.+|+|+|++|++||+++|+||||||||||+++|+|+..+. +.+|+|.+
T Consensus 17 ~~~~l~~~nl~~~~~~------------~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (274)
T PRK14265 17 DHSVFEVEGVKVFYGG------------FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLY 84 (274)
T ss_pred CCceEEEeeEEEEeCC------------eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEE
Confidence 3446999999999853 24999999999999999999999999999999999997532 25899999
Q ss_pred CCEeCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccc
Q 003437 121 DGKPVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYI 191 (820)
Q Consensus 121 ~G~~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~i 191 (820)
+|+++.. ...++.++|++|++.+++. ||.||+.+....+. .. ....+.+.++++.+++.+ ..++.
T Consensus 85 ~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~- 158 (274)
T PRK14265 85 RDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEK- 158 (274)
T ss_pred CCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCC-
Confidence 9998742 1235678999999988875 99999988754321 11 123345677888888742 23333
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEE
Q 003437 192 GNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 192 g~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||+++|+++. +.++||++++
T Consensus 159 ----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~-~~~~~d~i~~ 232 (274)
T PRK14265 159 ----GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQ-ASRVADWTAF 232 (274)
T ss_pred ----cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhCCEEEE
Confidence 457999999999999999999999999999999999999999999999975 6899999999985 7889999999
Q ss_pred Ee---------CCeEEEEcCccchh
Q 003437 272 LA---------RGRLVYMGSPVALP 287 (820)
Q Consensus 272 L~---------~G~iv~~G~~~~~~ 287 (820)
|+ +|++++.|+++++.
T Consensus 233 l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 233 FNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred EecccccccccCceEEEeCCHHHHH
Confidence 98 79999999998774
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=351.72 Aligned_cols=218 Identities=23% Similarity=0.392 Sum_probs=183.4
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC---CCCceEEEEC
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ---GSLEGSVRID 121 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~---~~~~G~I~i~ 121 (820)
...|+++||++.|.+ +.+|+|+||+|++||+++|+||||||||||+++|+|++.+ .+++|+|.++
T Consensus 37 ~~~l~i~~l~~~~~~------------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~ 104 (285)
T PRK14254 37 ETVIEARDLNVFYGD------------EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFR 104 (285)
T ss_pred CceEEEEEEEEEECC------------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEEC
Confidence 345999999999853 2499999999999999999999999999999999999753 1468999999
Q ss_pred CEeCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 003437 122 GKPVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYIG 192 (820)
Q Consensus 122 G~~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig 192 (820)
|+++.. ...++.++|++|++.+++. ||.||+.+....+. ... +..++++++++.+||.+ ..++.
T Consensus 105 G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~-- 177 (285)
T PRK14254 105 GKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS-- 177 (285)
T ss_pred CEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC--
Confidence 998742 1345678999999988886 99999998765431 222 34567899999999853 33444
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEE-E
Q 003437 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRII-V 271 (820)
Q Consensus 193 ~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~-l 271 (820)
+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ .|||+++|++.. +..+||+++ +
T Consensus 178 ---~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~~-i~~~~dri~v~ 252 (285)
T PRK14254 178 ---GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQQ-AARISDKTAVF 252 (285)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHH-HHhhcCEEEEE
Confidence 3579999999999999999999999999999999999999999999999764 899999999974 778999975 6
Q ss_pred EeCCeEEEEcCccch
Q 003437 272 LARGRLVYMGSPVAL 286 (820)
Q Consensus 272 L~~G~iv~~G~~~~~ 286 (820)
|++|+++..|+++++
T Consensus 253 l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 253 LTGGELVEFDDTDKI 267 (285)
T ss_pred eeCCEEEEeCCHHHH
Confidence 799999999987765
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=339.41 Aligned_cols=211 Identities=31% Similarity=0.532 Sum_probs=181.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|..+. +.+.+|+|+||++++||+++|+||||||||||+++|+|+++ +++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~~~--------~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 71 (220)
T TIGR02982 2 ISIRNLNHYYGHGS--------LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELYG 71 (220)
T ss_pred EEEEEEEEEccCCC--------cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhHh
Confidence 78999999985321 12459999999999999999999999999999999999875 468999999998753
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 128 S------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 128 ~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ..++.++|++|++.+++.+|+.||+.+...... ....++..+++.++++.+||.+..++.+. .|||
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~ 144 (220)
T TIGR02982 72 ASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYPH-----NLSG 144 (220)
T ss_pred cCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCH
Confidence 1 235678999999999998999999998764321 13455566789999999999877777654 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .++|||+++|+++ ..++||++++|++|++
T Consensus 145 G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 145 GQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999986 5899999999986 3478999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=337.62 Aligned_cols=199 Identities=29% Similarity=0.464 Sum_probs=171.6
Q ss_pred EEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC--
Q 003437 50 FKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT-- 127 (820)
Q Consensus 50 ~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~-- 127 (820)
++||++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++ +++|+|.++|+++..
T Consensus 1 i~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~ 66 (206)
T TIGR03608 1 LKNISKKFGD------------KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLN 66 (206)
T ss_pred CcceEEEECC------------EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccc
Confidence 4688888853 249999999999999999999999999999999999885 468999999998531
Q ss_pred -c----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 128 -S----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 128 -~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
. ..++.++|++|++.+++.+||+||+.+..... .....+..++++++++.+||++..++.+. .||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G 138 (206)
T TIGR03608 67 SKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKIY-----ELSGG 138 (206)
T ss_pred hhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCChh-----hCCHH
Confidence 1 23467899999999999999999999875432 23344556788999999999887777764 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
||||++||++|+.+|++|||||||+|||+.++..+.+.|+++.++|.|||+++|++.. + .+||++++|
T Consensus 139 ~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~-~~~d~i~~l 206 (206)
T TIGR03608 139 EQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEV-A-KQADRVIEL 206 (206)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-hhcCEEEeC
Confidence 9999999999999999999999999999999999999999998779999999999963 4 579999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=348.17 Aligned_cols=229 Identities=26% Similarity=0.354 Sum_probs=188.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|....- .+. ..++.+|+|+||+|++||+++|+||||||||||+++|+|+.. +++|+|.++|.++.
T Consensus 3 ~l~~~nl~~~~~~~~~-~~~--~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 3 LLNVSGLSHHYAHGGL-SGK--HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred eEEEeceEEEecCCcc-ccc--cCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 4899999999963100 000 002459999999999999999999999999999999999875 46899999999875
Q ss_pred Cc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 003437 127 TS------YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRR 197 (820)
Q Consensus 127 ~~------~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~ 197 (820)
.. ..++.++|++|++ .+++..|+.|++.+...... .....+..++++++++.+|+. +..++.++
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----- 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDKRPP----- 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhCCCc-----
Confidence 31 1356789999997 46778899999977543211 223445566889999999996 45666554
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++.. +.++||++++|++|+
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~-i~~~~d~i~~l~~G~ 229 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRL-VERFCQRVMVMDNGQ 229 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHH-HHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999875 8999999999974 778999999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
+++.|+++++..
T Consensus 230 i~~~g~~~~~~~ 241 (268)
T PRK10419 230 IVETQPVGDKLT 241 (268)
T ss_pred EeeeCChhhccC
Confidence 999999877653
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=348.41 Aligned_cols=221 Identities=22% Similarity=0.334 Sum_probs=182.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||+++|+. +.+|+|+|++|++||+++|+||||||||||+|+|+|+..+. +++|+|.++|+
T Consensus 10 ~l~i~~v~~~~~~------------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 77 (264)
T PRK14243 10 VLRTENLNVYYGS------------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGK 77 (264)
T ss_pred EEEEeeeEEEECC------------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCE
Confidence 5999999999853 24899999999999999999999999999999999987421 36899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
++.. ...++.++|++|++.+++. ||.||+.+....+ ... .+..+++.++++.+++.+..+... +..+..
T Consensus 78 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~ 151 (264)
T PRK14243 78 NLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKL-KQSGLS 151 (264)
T ss_pred EccccccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHh-cCCccc
Confidence 8742 2235678999999988884 9999998875432 111 233456777888888753211111 223457
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe-----
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA----- 273 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~----- 273 (820)
||||||||++|||+|+.+|++|||||||+|||+.++..+.++|+++++ ++|||+++|+++. +.++||++++|+
T Consensus 152 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~-~~~~~d~v~~l~~~~~~ 229 (264)
T PRK14243 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQ-AARVSDMTAFFNVELTE 229 (264)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH-HHHhCCEEEEEeccccc
Confidence 999999999999999999999999999999999999999999999976 5899999999974 889999999998
Q ss_pred ----CCeEEEEcCccchh
Q 003437 274 ----RGRLVYMGSPVALP 287 (820)
Q Consensus 274 ----~G~iv~~G~~~~~~ 287 (820)
+|++++.|+++++.
T Consensus 230 ~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 230 GGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred ccccCceEEEeCCHHHHH
Confidence 79999999988774
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=347.77 Aligned_cols=215 Identities=29% Similarity=0.502 Sum_probs=172.8
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|... .+.+|+|+|+++++||+++|+||||||||||+++|+|+++ +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~~----------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (237)
T cd03252 1 ITFEHVRFRYKPD----------GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLAL 68 (237)
T ss_pred CEEEEEEEecCCC----------CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHh
Confidence 4789999998531 1359999999999999999999999999999999999985 468999999998743
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCCCCC
Q 003437 128 ---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKK-----KRVYELLDQL--GLRSATHTYIGNEGRR 197 (820)
Q Consensus 128 ---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~ig~~~~~ 197 (820)
...++.++|++|++.+++ .||.||+.+... ........ ..+.++++.+ ++....+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~ 137 (237)
T cd03252 69 ADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GA 137 (237)
T ss_pred cCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CC
Confidence 223567899999998876 599999987431 11121111 1223344444 444333333 45
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|+++. +. .||++++|++|++
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~~-~~d~v~~l~~G~i 214 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-VK-NADRIIVMEKGRI 214 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-HH-hCCEEEEEECCEE
Confidence 7999999999999999999999999999999999999999999999974 8999999999985 54 6999999999999
Q ss_pred EEEcCccchhh
Q 003437 278 VYMGSPVALPA 288 (820)
Q Consensus 278 v~~G~~~~~~~ 288 (820)
++.|+++++..
T Consensus 215 ~~~~~~~~~~~ 225 (237)
T cd03252 215 VEQGSHDELLA 225 (237)
T ss_pred EEEcCHHHHHh
Confidence 99998877643
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=342.28 Aligned_cols=205 Identities=25% Similarity=0.440 Sum_probs=174.1
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceEEEECCEeCCCccc-cceEEEEccCCC--CCCCCC
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG--SLEGSVRIDGKPVTTSYM-KMVSSYVMQDDQ--LFPMLT 148 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~--~~~G~I~i~G~~~~~~~~-~~~~gyv~Q~~~--l~~~lT 148 (820)
+|+|+|+++++||+++|+||||||||||+|+|+|++++. +++|+|.++|+++..... ++.++|++|++. +++.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 579999999999999999999999999999999998531 268999999998754322 357899999984 567789
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC---ccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 003437 149 VFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR---SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEP 225 (820)
Q Consensus 149 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEP 225 (820)
+.|++.+..... .....+..+++.++++.+||. +..++.+ ..|||||||||+||++|+.+|++||||||
T Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSL---GKLSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHc---CccHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999998765432 112234456789999999997 3455555 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchh
Q 003437 226 TSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 226 tsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
|+|||+.++..+.+.|++++++ |+|||+++|+++. +..+||++++|++|+++..|+++++.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGV-VARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999874 8999999999984 77899999999999999999887764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=344.87 Aligned_cols=219 Identities=25% Similarity=0.366 Sum_probs=181.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe--
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP-- 124 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~-- 124 (820)
.|+++||++.|++ +.+|+|+|++|++||+++|+||||||||||+++|+|+.+ +.+|+|.++|++
T Consensus 3 ~l~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (253)
T TIGR02323 3 LLQVSGLSKSYGG------------GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSGA 68 (253)
T ss_pred eEEEeeeEEEeCC------------ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEeccccc
Confidence 4999999999853 248999999999999999999999999999999999885 468999999976
Q ss_pred ---CCCcc-------ccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccc
Q 003437 125 ---VTTSY-------MKMVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYI 191 (820)
Q Consensus 125 ---~~~~~-------~~~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~i 191 (820)
+.... .++.++|++|++. +++.+|+.||+.+..... . .....+..+++.++++.+|+. +..++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 146 (253)
T TIGR02323 69 ELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDLP 146 (253)
T ss_pred ccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcCc
Confidence 43211 2346899999974 456679999997643211 1 011223456788999999997 3566655
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEE
Q 003437 192 GNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRII 270 (820)
Q Consensus 192 g~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 270 (820)
. .|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++.. +..+||+++
T Consensus 147 ~-----~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~-~~~~~d~~~ 220 (253)
T TIGR02323 147 R-----AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGV-ARLLAQRLL 220 (253)
T ss_pred h-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEE
Confidence 4 69999999999999999999999999999999999999999999998764 8999999999974 777899999
Q ss_pred EEeCCeEEEEcCccchh
Q 003437 271 VLARGRLVYMGSPVALP 287 (820)
Q Consensus 271 lL~~G~iv~~G~~~~~~ 287 (820)
+|++|++++.|+++++.
T Consensus 221 ~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 221 VMQQGRVVESGLTDQVL 237 (253)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999887664
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=331.47 Aligned_cols=192 Identities=49% Similarity=0.829 Sum_probs=165.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|+++..+.+|+|.++|+++.
T Consensus 3 ~l~~~~ls~~~~~~~~------~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~ 76 (194)
T cd03213 3 TLSFRNLTVTVKSSPS------KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD 76 (194)
T ss_pred EEEEEeeEEEEecCCC------cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCc
Confidence 4899999999964210 0124599999999999999999999999999999999998711246899999999886
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
....++.++|++|++.+++.+|++||+.+...+. .||||||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~~qr 119 (194)
T cd03213 77 KRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGERKR 119 (194)
T ss_pred hHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHHHHH
Confidence 5445667899999999999999999997643110 499999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++..++.++||++++|++|++++.|
T Consensus 120 v~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 120 VSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999998779999999999975577889999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=337.12 Aligned_cols=204 Identities=24% Similarity=0.304 Sum_probs=177.4
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
+..|+++|++++|++ +.+|+++|+++++||+++|+||||||||||+|+|+|+++ +.+|+|.++|++
T Consensus 9 ~~~l~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~ 74 (214)
T PRK13543 9 PPLLAAHALAFSRNE------------EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKT 74 (214)
T ss_pred cceEEEeeEEEecCC------------ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEE
Confidence 446999999999853 249999999999999999999999999999999999885 467999999998
Q ss_pred CCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 125 VTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 125 ~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
+.....++.++|++|++.+++.+|+.||+.+....+. . ...+.+.++++.++|.+..++.++ .||||||
T Consensus 75 i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 143 (214)
T PRK13543 75 ATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLVR-----QLSAGQK 143 (214)
T ss_pred ccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCChh-----hCCHHHH
Confidence 8643334568999999999999999999988754321 1 123467789999999887777765 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
|||+||++++.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +.++||++++|+.
T Consensus 144 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~~~i~~l~~ 212 (214)
T PRK13543 144 KRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYA-APPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhh-hhhhcceEEEEee
Confidence 99999999999999999999999999999999999999998889999999999984 8899999999863
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=345.07 Aligned_cols=222 Identities=23% Similarity=0.326 Sum_probs=185.6
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDG 122 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G 122 (820)
..+.++++++.|++ +.+|+|+||++++||+++|+|+||||||||+|+|+|++.+. +.+|+|+++|
T Consensus 7 ~~~~~~~~~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 74 (261)
T PRK14263 7 IVMDCKLDKIFYGN------------FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLG 74 (261)
T ss_pred ceEEEEeEEEEeCC------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECC
Confidence 35999999999853 34999999999999999999999999999999999998541 2689999999
Q ss_pred EeCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 003437 123 KPVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 123 ~~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
+++.. ...++.++|++|++.++ .+|+.||+.+....+. . ..+..+++.++++.++|.+..+... +..++
T Consensus 75 ~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~ 148 (261)
T PRK14263 75 QDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGL 148 (261)
T ss_pred EeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCcc
Confidence 98742 12356689999999888 4899999998765431 1 2234567899999999865432222 13446
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe----
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA---- 273 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~---- 273 (820)
.||||||||++|||||+.+|++|||||||+|||+.++.++.+.|+++++ +.|||+++|+++. +.++||++++|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~~-i~~~~d~v~~l~~~~~ 226 (261)
T PRK14263 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQQ-AIRVADTTAFFSVDIS 226 (261)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHH-HHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999964 7999999999974 788999999996
Q ss_pred ----CCeEEEEcCccchh
Q 003437 274 ----RGRLVYMGSPVALP 287 (820)
Q Consensus 274 ----~G~iv~~G~~~~~~ 287 (820)
+|++++.|+++++.
T Consensus 227 ~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 227 QGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred cccCCceEEEeCCHHHHH
Confidence 89999999987764
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=365.72 Aligned_cols=219 Identities=32% Similarity=0.485 Sum_probs=187.6
Q ss_pred CCCCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEEC
Q 003437 42 MIPGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRID 121 (820)
Q Consensus 42 ~~~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~ 121 (820)
..++..|+|+||+++|+.+ ++||+++||+|++||.+||+|+|||||||++|+|.++.. .+|+|++|
T Consensus 346 ~~~~~~I~F~dV~f~y~~k-----------~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~Id 411 (591)
T KOG0057|consen 346 ELFGGSIEFDDVHFSYGPK-----------RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILID 411 (591)
T ss_pred ccCCCcEEEEeeEEEeCCC-----------CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEEC
Confidence 3445569999999999743 359999999999999999999999999999999999884 58999999
Q ss_pred CEeCCC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------Cccccccc
Q 003437 122 GKPVTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYI 191 (820)
Q Consensus 122 G~~~~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~i 191 (820)
|+++.. ...|+.+||||||..||.+ ||.+|+.++.. ..+.++ |.++.+..|+ ++...|.+
T Consensus 412 G~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~-----sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~V 481 (591)
T KOG0057|consen 412 GQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNP-----SASDEE----VVEACKRAGLHDVISRLPDGYQTLV 481 (591)
T ss_pred CeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCC-----CcCHHH----HHHHHHHcCcHHHHHhccccchhhH
Confidence 999864 3578889999999999987 99999998742 234433 4444454444 45677889
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEE
Q 003437 192 GNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 192 g~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
|+++. .|||||||||+||||++.+|+|+++|||||.||..+..++++.+++ ...|+|+|++.|+.+. ..-||+|++
T Consensus 482 GerG~-~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~l--l~~~DkI~~ 557 (591)
T KOG0057|consen 482 GERGL-MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDL--LKDFDKIIV 557 (591)
T ss_pred hhccc-ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchh--HhcCCEEEE
Confidence 97664 5999999999999999999999999999999999999999999999 3458999999999874 456999999
Q ss_pred EeCCeEEEEcCccchhh
Q 003437 272 LARGRLVYMGSPVALPA 288 (820)
Q Consensus 272 L~~G~iv~~G~~~~~~~ 288 (820)
|++|++.+.|+.++++.
T Consensus 558 l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 558 LDNGTVKEYGTHSELLA 574 (591)
T ss_pred EECCeeEEeccHHHHhh
Confidence 99999999999999875
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=343.16 Aligned_cols=223 Identities=22% Similarity=0.368 Sum_probs=184.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||++.|++ +.+|+|+|++|.+||+++|+||||||||||+++|+|+..+. +++|+|.++|.
T Consensus 3 ~l~~~~v~~~~~~------------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 70 (250)
T PRK14266 3 RIEVENLNTYFDD------------AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGV 70 (250)
T ss_pred EEEEEeEEEEeCC------------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCE
Confidence 4899999999853 24999999999999999999999999999999999986421 36899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
++.. ...++.++|++|++.+++. |+.||+.+...... ..+.+..++++.++++.+||.+...... +..+..
T Consensus 71 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~ 146 (250)
T PRK14266 71 DIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKL-DKSALG 146 (250)
T ss_pred EcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCccc
Confidence 8753 1235678999999988885 99999988654321 1223445677889999999854321112 233457
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||++||++|+.+|++|+|||||+|||+.++..+.++|+++++ +.|||+++|++.. +...+|++++|++|+++
T Consensus 147 LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~~~~~~~i~~l~~G~i~ 224 (250)
T PRK14266 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQQ-ATRVSKYTSFFLNGEII 224 (250)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHHH-HHhhcCEEEEEECCeEE
Confidence 999999999999999999999999999999999999999999999965 7999999999985 78899999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
+.|+++++.
T Consensus 225 ~~g~~~~~~ 233 (250)
T PRK14266 225 ESGLTDQIF 233 (250)
T ss_pred EeCCHHHHH
Confidence 999987763
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=379.13 Aligned_cols=225 Identities=26% Similarity=0.425 Sum_probs=189.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i~G~ 123 (820)
.|+++||+++|+... ..+.+|+|+||++++||+++|+||||||||||+|+|+|++++. +++|+|.++|+
T Consensus 5 ~l~~~~l~~~~~~~~--------~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 76 (529)
T PRK15134 5 LLAIENLSVAFRQQQ--------TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGE 76 (529)
T ss_pred eEEEeceEEEecCCC--------CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCE
Confidence 599999999995310 1235999999999999999999999999999999999998642 26899999999
Q ss_pred eCCCcc------c-cceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc---ccccc
Q 003437 124 PVTTSY------M-KMVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA---THTYI 191 (820)
Q Consensus 124 ~~~~~~------~-~~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~i 191 (820)
++.... . ++.+|||+|++. +++.+||+|++.+...... ..+..+..++++++++.+||.+. .++.+
T Consensus 77 ~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 154 (529)
T PRK15134 77 SLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDYP 154 (529)
T ss_pred ecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhCC
Confidence 875311 1 246899999974 6777899999887543221 23455667889999999999763 45555
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEE
Q 003437 192 GNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRII 270 (820)
Q Consensus 192 g~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 270 (820)
+ +|||||||||+||++|+.+|++|||||||+|||+.++..++++|++++++ |.|||++||+++. +..+||+|+
T Consensus 155 ~-----~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~dri~ 228 (529)
T PRK15134 155 H-----QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSI-VRKLADRVA 228 (529)
T ss_pred c-----ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHH-HHHhcCEEE
Confidence 4 69999999999999999999999999999999999999999999999875 8999999999985 778999999
Q ss_pred EEeCCeEEEEcCccchh
Q 003437 271 VLARGRLVYMGSPVALP 287 (820)
Q Consensus 271 lL~~G~iv~~G~~~~~~ 287 (820)
+|++|++++.|+++++.
T Consensus 229 ~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 229 VMQNGRCVEQNRAATLF 245 (529)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999987764
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=384.44 Aligned_cols=231 Identities=26% Similarity=0.351 Sum_probs=191.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|+....... .....+.+|+||||+|++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~-~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLN-RVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCcccc-ccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 36999999999953100000 00012359999999999999999999999999999999999985 4689999999987
Q ss_pred CCc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 003437 126 TTS------YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGR 196 (820)
Q Consensus 126 ~~~------~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~ 196 (820)
... ..++.++||+|++ .+++.+||.|++.+....+. ...+++..+++.++|+.+||. +..++.++
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~---- 462 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYPH---- 462 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCcc----
Confidence 531 1345789999997 58899999999998754321 113445567899999999996 55666654
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
+|||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||++. +..+||+|++|++|
T Consensus 463 -~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~-v~~~~dri~vl~~G 540 (623)
T PRK10261 463 -EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAV-VERISHRVAVMYLG 540 (623)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECC
Confidence 69999999999999999999999999999999999999999999999875 9999999999985 78899999999999
Q ss_pred eEEEEcCccchh
Q 003437 276 RLVYMGSPVALP 287 (820)
Q Consensus 276 ~iv~~G~~~~~~ 287 (820)
++++.|+++++.
T Consensus 541 ~iv~~g~~~~i~ 552 (623)
T PRK10261 541 QIVEIGPRRAVF 552 (623)
T ss_pred EEEEecCHHHHh
Confidence 999999988874
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=366.01 Aligned_cols=217 Identities=32% Similarity=0.504 Sum_probs=186.0
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
+..++.+||++.|+++ +++++|+|+++++|+.+||+|+||||||||+++|+|+.++ ++|+|.+||.+
T Consensus 318 ~~ei~~~~l~~~y~~g-----------~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng~~ 384 (559)
T COG4988 318 PIEISLENLSFRYPDG-----------KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGID 384 (559)
T ss_pred CceeeecceEEecCCC-----------CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCcc
Confidence 4456667999999753 2699999999999999999999999999999999999854 68999999988
Q ss_pred CCC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc------cccccccCCC
Q 003437 125 VTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS------ATHTYIGNEG 195 (820)
Q Consensus 125 ~~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------~~~~~ig~~~ 195 (820)
+.. ..++++++||+|++.+|+. |++|||.++.. ..++ +.+.++++..||.+ ..|+.+|+ .
T Consensus 385 l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~----e~i~~al~~a~l~~~v~~p~GLdt~ige-~ 453 (559)
T COG4988 385 LRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DASD----EEIIAALDQAGLLEFVPKPDGLDTVIGE-G 453 (559)
T ss_pred ccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cCCH----HHHHHHHHHhcHHHhhcCCCcccchhcc-C
Confidence 754 4578999999999999998 99999998632 1233 44566666666643 45778875 4
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.++|||||+|||++||||+++++++|+||||++||.++.+.|++.|.+++++ +|+|++||++.. + .-+|+|++|++|
T Consensus 454 G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~~-~-~~~D~I~vld~G 530 (559)
T COG4988 454 GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRLED-A-ADADRIVVLDNG 530 (559)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChHH-H-hcCCEEEEecCC
Confidence 4689999999999999999999999999999999999999999999999875 999999999974 3 459999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|.++++.+
T Consensus 531 ~l~~~g~~~~L~~ 543 (559)
T COG4988 531 RLVEQGTHEELSE 543 (559)
T ss_pred ceeccCCHHHHhh
Confidence 9999999988854
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=375.97 Aligned_cols=217 Identities=27% Similarity=0.362 Sum_probs=186.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++.
T Consensus 4 ~l~~~~l~~~~~~------------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~ 69 (501)
T PRK11288 4 YLSFDGIGKTFPG------------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMR 69 (501)
T ss_pred eEEEeeeEEEECC------------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 5999999999953 249999999999999999999999999999999999885 46899999999875
Q ss_pred Cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 TS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
.. ..++.++||+|++.+++.+||.||+.++............+..+++.++++.+||.+..++.++ .||||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 144 (501)
T PRK11288 70 FASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLK-----YLSIG 144 (501)
T ss_pred CCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchh-----hCCHH
Confidence 31 2356789999999999999999999986421110112344556788999999999877776664 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +..+||++++|++|+++..++
T Consensus 145 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~-~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 145 QRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEE-IFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999999998889999999999984 778999999999999997665
Q ss_pred c
Q 003437 283 P 283 (820)
Q Consensus 283 ~ 283 (820)
.
T Consensus 224 ~ 224 (501)
T PRK11288 224 D 224 (501)
T ss_pred c
Confidence 3
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=344.46 Aligned_cols=221 Identities=25% Similarity=0.381 Sum_probs=184.0
Q ss_pred CCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---CceEEEE
Q 003437 44 PGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS---LEGSVRI 120 (820)
Q Consensus 44 ~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~---~~G~I~i 120 (820)
+...|+++||+++|++ +.+|+|+|++|++||+++|+|+||||||||+++|+|+..+.+ ++|+|.+
T Consensus 13 ~~~~l~~~~l~~~~~~------------~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~ 80 (265)
T PRK14252 13 TQQKSEVNKLNFYYGG------------YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL 80 (265)
T ss_pred CCceEEEEEEEEEECC------------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEE
Confidence 3456999999999953 249999999999999999999999999999999999976422 6899999
Q ss_pred CCEeCCC-------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHHHcCCCc----ccc
Q 003437 121 DGKPVTT-------SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISR-DEKKKRVYELLDQLGLRS----ATH 188 (820)
Q Consensus 121 ~G~~~~~-------~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~----~~~ 188 (820)
+|.++.. ...++.++|++|++.+++. ||+||+.+..... .... ...++++.++++.+++.+ ..+
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~ 156 (265)
T PRK14252 81 HPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRLG 156 (265)
T ss_pred cCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHHh
Confidence 9987631 1235678999999998886 9999998875432 1222 223467888888888742 233
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCE
Q 003437 189 TYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 189 ~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 268 (820)
+. +..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.++||+
T Consensus 157 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~-~~~~~d~ 229 (265)
T PRK14252 157 DL-----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQ-AARVSDY 229 (265)
T ss_pred CC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHH-HHHhCCE
Confidence 33 347999999999999999999999999999999999999999999999976 6899999999974 7789999
Q ss_pred EEEEeCCeEEEEcCccchh
Q 003437 269 IIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 269 v~lL~~G~iv~~G~~~~~~ 287 (820)
+++|++|+++..|+.+++.
T Consensus 230 i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 230 TAYMYMGELIEFGATDTIF 248 (265)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999887653
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=378.36 Aligned_cols=221 Identities=27% Similarity=0.389 Sum_probs=186.6
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEEC------
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRID------ 121 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~------ 121 (820)
|+++||+++|++ +.+|+|+||++.+||+++|+||||||||||||+|+|+++..+++|+|.++
T Consensus 1 l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~ 68 (520)
T TIGR03269 1 IEVKNLTKKFDG------------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEK 68 (520)
T ss_pred CEEEEEEEEECC------------eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccc
Confidence 578999999953 24999999999999999999999999999999999986212468999997
Q ss_pred -----------------CEeCC-------C------ccccceEEEEccC-CCCCCCCCHHHHHHHHHHhcCCCCCCHHHH
Q 003437 122 -----------------GKPVT-------T------SYMKMVSSYVMQD-DQLFPMLTVFETFMFAAEVRLPPSISRDEK 170 (820)
Q Consensus 122 -----------------G~~~~-------~------~~~~~~~gyv~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~ 170 (820)
|.++. . ...++.++||+|+ +.+++.+||+||+.+..... ..+.++.
T Consensus 69 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~ 145 (520)
T TIGR03269 69 CGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEA 145 (520)
T ss_pred ccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHH
Confidence 22221 0 0124568999997 67888899999999876432 2344555
Q ss_pred HHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCc
Q 003437 171 KKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGS 249 (820)
Q Consensus 171 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~ 249 (820)
.+++.++++.+||++..++.++ .|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++++ .|.
T Consensus 146 ~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 220 (520)
T TIGR03269 146 VGRAVDLIEMVQLSHRITHIAR-----DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI 220 (520)
T ss_pred HHHHHHHHHHcCChhhhhcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 6789999999999887777664 6999999999999999999999999999999999999999999999976 499
Q ss_pred EEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhhh
Q 003437 250 IVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAH 289 (820)
Q Consensus 250 tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 289 (820)
|||++||++.. +.++||++++|++|++++.|+++++...
T Consensus 221 tviivtHd~~~-~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 221 SMVLTSHWPEV-IEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred EEEEEeCCHHH-HHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 99999999985 7789999999999999999988777554
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=344.17 Aligned_cols=215 Identities=31% Similarity=0.461 Sum_probs=175.1
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|+++ ++.+|+++||++++||+++|+||||||||||+++|+|+.+ +++|+|.++|+++..
T Consensus 1 i~~~~l~~~~~~~----------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 68 (234)
T cd03251 1 VEFKNVTFRYPGD----------GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRD 68 (234)
T ss_pred CEEEEEEEEeCCC----------CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhh
Confidence 4789999998532 1259999999999999999999999999999999999985 468999999998753
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCCCCC
Q 003437 128 ---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKK-----KRVYELLDQL--GLRSATHTYIGNEGRR 197 (820)
Q Consensus 128 ---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~ig~~~~~ 197 (820)
...++.++|++|++.+++ .||+||+.+.... ....+.. ..+.++++.+ ++.+..+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~ 137 (234)
T cd03251 69 YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GV 137 (234)
T ss_pred CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CC
Confidence 123566899999998887 5999999875321 1121111 1234555555 555544444 35
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++. +.. ||++++|++|++
T Consensus 138 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~-~d~v~~l~~G~i 214 (234)
T cd03251 138 KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-IEN-ADRIVVLEDGKI 214 (234)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-Hhh-CCEEEEecCCeE
Confidence 7999999999999999999999999999999999999999999999964 8999999999975 554 999999999999
Q ss_pred EEEcCccchhh
Q 003437 278 VYMGSPVALPA 288 (820)
Q Consensus 278 v~~G~~~~~~~ 288 (820)
+..|+++++..
T Consensus 215 ~~~~~~~~~~~ 225 (234)
T cd03251 215 VERGTHEELLA 225 (234)
T ss_pred eeeCCHHHHHH
Confidence 99998776643
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=341.02 Aligned_cols=222 Identities=27% Similarity=0.325 Sum_probs=179.9
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|++ +.+|+|+|++|++||+++|+||||||||||+++|+|+....+++|+|.++|.++..
T Consensus 2 i~~~nl~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~ 69 (248)
T PRK09580 2 LSIKDLHVSVED------------KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69 (248)
T ss_pred eEEEEEEEEeCC------------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCcccc
Confidence 789999999853 24999999999999999999999999999999999985323578999999988743
Q ss_pred c----cccceEEEEccCCCCCCCCCHHHHHHHHHH-hcC--C-CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCC
Q 003437 128 S----YMKMVSSYVMQDDQLFPMLTVFETFMFAAE-VRL--P-PSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRRG 198 (820)
Q Consensus 128 ~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~-~~~--~-~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~ 198 (820)
. ..++.++|++|++.+++.+|+.+++.+... ++. . ......+..++++++++.+++. +..++.+. +.
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~ 145 (248)
T PRK09580 70 LSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VG 145 (248)
T ss_pred CCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----CC
Confidence 1 123468999999988888888777654321 110 0 0012223356788899999995 34444432 26
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhh-cCEEEEEeCCeE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQML-LDRIIVLARGRL 277 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~lL~~G~i 277 (820)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++.|+|||++||++.. +... +|++++|++|++
T Consensus 146 LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~-~~~~~~d~i~~l~~g~i 224 (248)
T PRK09580 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQGRI 224 (248)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHhhhCCEEEEEECCeE
Confidence 99999999999999999999999999999999999999999999998778999999999875 6665 899999999999
Q ss_pred EEEcCccch
Q 003437 278 VYMGSPVAL 286 (820)
Q Consensus 278 v~~G~~~~~ 286 (820)
++.|+++.+
T Consensus 225 ~~~g~~~~~ 233 (248)
T PRK09580 225 VKSGDFTLV 233 (248)
T ss_pred EEeCCHHHH
Confidence 999987744
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=345.44 Aligned_cols=200 Identities=26% Similarity=0.428 Sum_probs=174.0
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc---cccceEEEEccCCCCCCCCCHH
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS---YMKMVSSYVMQDDQLFPMLTVF 150 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~---~~~~~~gyv~Q~~~l~~~lTV~ 150 (820)
+|+|+||++++||+++|+||||||||||+++|+|+.+ .+|+|.++|+++... ..++.++|++|++.+++.+||.
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999873 379999999987532 2345689999998888889999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhc-------CCCEEEEe
Q 003437 151 ETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIH-------KPSLLFLD 223 (820)
Q Consensus 151 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~-------~P~lLllD 223 (820)
||+.+.... ....++..++++++++.+||.+..++.++ .||||||||++||++|+. +|++||||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSVN-----QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999876321 12334446678999999999877777664 699999999999999998 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccch
Q 003437 224 EPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286 (820)
Q Consensus 224 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 286 (820)
|||+|||+.++..+.++|++++++|.|||++||+++. +.++||++++|++|++++.|+++++
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~-~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNH-TLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999998789999999999974 7889999999999999999987655
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=376.73 Aligned_cols=217 Identities=21% Similarity=0.284 Sum_probs=185.7
Q ss_pred EEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-
Q 003437 50 FKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS- 128 (820)
Q Consensus 50 ~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~- 128 (820)
++||+++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++...
T Consensus 1 ~~nl~~~~~~------------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~ 66 (491)
T PRK10982 1 MSNISKSFPG------------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKS 66 (491)
T ss_pred CCceEEEeCC------------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCC
Confidence 3688888853 249999999999999999999999999999999999885 4689999999987532
Q ss_pred ---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 129 ---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 129 ---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
..++.++||+|++.+++.+||+||+.+..........+.++..++++++++.+|+.+..++.++ +|||||||
T Consensus 67 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~q 141 (491)
T PRK10982 67 SKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVA-----TLSVSQMQ 141 (491)
T ss_pred HHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHH
Confidence 1345689999999899999999999876421101012334445678999999999887777765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++. +..+||++++|++|+++..|++++
T Consensus 142 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~-~~~~~d~i~~l~~G~i~~~~~~~~ 220 (491)
T PRK10982 142 MIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEE-IFQLCDEITILRDGQWIATQPLAG 220 (491)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEeecChhh
Confidence 9999999999999999999999999999999999999998889999999999974 778999999999999999998876
Q ss_pred h
Q 003437 286 L 286 (820)
Q Consensus 286 ~ 286 (820)
+
T Consensus 221 ~ 221 (491)
T PRK10982 221 L 221 (491)
T ss_pred C
Confidence 5
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=412.65 Aligned_cols=226 Identities=25% Similarity=0.396 Sum_probs=201.6
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+++||+|+|+++ ++.+|+|||+.|++||+++|+||||||||||+|+|+|++. +++|+|.++|++
T Consensus 1935 ~~~L~v~nLsK~Y~~~----------~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~ 2002 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGT----------SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKS 2002 (2272)
T ss_pred CceEEEEEEEEEECCC----------CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEE
Confidence 3469999999999631 2359999999999999999999999999999999999985 468999999999
Q ss_pred CCCc--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 125 VTTS--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 125 ~~~~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
+... ..++.+||++|++.+++.+||+|+|.+.+.++ +.+.++.+++++++++.+||.+.+|++++ .||||
T Consensus 2003 i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGG 2074 (2272)
T TIGR01257 2003 ILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGG 2074 (2272)
T ss_pred CcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHH
Confidence 8532 23567999999999999999999999987765 24455556788999999999988888876 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||+||+||+.+|+||||||||+|||+.+++.+.+.|++++++|+|||++||+++ ++..+|||+++|++|++++.|+
T Consensus 2075 qKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs 2153 (2272)
T TIGR01257 2075 NKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999999888999999999998 5889999999999999999999
Q ss_pred ccchhhhhh
Q 003437 283 PVALPAHLA 291 (820)
Q Consensus 283 ~~~~~~~f~ 291 (820)
++++...+.
T Consensus 2154 ~q~Lk~~~g 2162 (2272)
T TIGR01257 2154 IQHLKSKFG 2162 (2272)
T ss_pred HHHHHHHhC
Confidence 999987765
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=342.94 Aligned_cols=218 Identities=27% Similarity=0.434 Sum_probs=182.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEEC-----
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRID----- 121 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~----- 121 (820)
.|+++|++++|++ +.+|+|+||++.+||+++|+||||||||||+++|+|+..+ .+|+|.++
T Consensus 10 ~i~~~~~~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~--~~G~v~~~G~~~~ 75 (257)
T PRK14246 10 VFNISRLYLYIND------------KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEI--YDSKIKVDGKVLY 75 (257)
T ss_pred heeeeeEEEecCC------------ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CcCceeEcCEEEE
Confidence 4999999999854 3489999999999999999999999999999999998754 45555554
Q ss_pred -CEeCCC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 003437 122 -GKPVTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS----ATHTYIGN 193 (820)
Q Consensus 122 -G~~~~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig~ 193 (820)
|.++.. ...++.++|++|++.+++.+||+||+.+...... ...+++..+++.++++.+|+.+ ..+..
T Consensus 76 ~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--- 150 (257)
T PRK14246 76 FGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP--- 150 (257)
T ss_pred CCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC---
Confidence 455432 1235678999999999999999999998754321 1234455677899999999964 33443
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 194 ~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++.. +..+||++++|+
T Consensus 151 --~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~-~~~~~d~v~~l~ 226 (257)
T PRK14246 151 --ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQ-VARVADYVAFLY 226 (257)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHH-HHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999965 6999999999974 778999999999
Q ss_pred CCeEEEEcCccchh
Q 003437 274 RGRLVYMGSPVALP 287 (820)
Q Consensus 274 ~G~iv~~G~~~~~~ 287 (820)
+|+++..|+++++.
T Consensus 227 ~g~i~~~g~~~~~~ 240 (257)
T PRK14246 227 NGELVEWGSSNEIF 240 (257)
T ss_pred CCEEEEECCHHHHH
Confidence 99999999987764
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=344.86 Aligned_cols=217 Identities=27% Similarity=0.429 Sum_probs=172.1
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|+++.|++.. ++.+|+|+||++++||+++|+||||||||||+++|+|+++ +++|+|.++|.++..
T Consensus 1 l~i~~l~~~~~~~~---------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 69 (238)
T cd03249 1 IEFKNVSFRYPSRP---------DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRD 69 (238)
T ss_pred CeEEEEEEecCCCC---------CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhh
Confidence 47899999985321 2359999999999999999999999999999999999875 468999999998753
Q ss_pred c---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCCCCC
Q 003437 128 S---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKK-----RVYELLDQL--GLRSATHTYIGNEGRR 197 (820)
Q Consensus 128 ~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~ig~~~~~ 197 (820)
. ..++.++|++|++.+++ .||+||+.+....+ ..++..+ .+.++++.+ ++....+. .++
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~ 138 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGE-----RGS 138 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeecc-----CCc
Confidence 1 23456899999998886 59999998753211 1111111 112222333 33333333 345
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++ +|+|||++||+++. +. .||++++|++|++
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~~-~~d~v~~l~~G~i 215 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-IR-NADLIAVLQNGQV 215 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hh-hCCEEEEEECCEE
Confidence 799999999999999999999999999999999999999999999997 79999999999975 55 7999999999999
Q ss_pred EEEcCccchhhh
Q 003437 278 VYMGSPVALPAH 289 (820)
Q Consensus 278 v~~G~~~~~~~~ 289 (820)
++.|+.+++...
T Consensus 216 ~~~~~~~~~~~~ 227 (238)
T cd03249 216 VEQGTHDELMAQ 227 (238)
T ss_pred EEeCCHHHHhhc
Confidence 999987766543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=327.22 Aligned_cols=220 Identities=26% Similarity=0.439 Sum_probs=196.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
++++||+|+|++ +.+|+|+|+.|++|.+++|+|||||||||||.+++.+++ .++|+|+++|.++..
T Consensus 2 I~i~nv~K~y~~------------~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~ 67 (252)
T COG4604 2 ITIENVSKSYGT------------KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTS 67 (252)
T ss_pred eeehhhhHhhCC------------EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeeccc
Confidence 789999999964 359999999999999999999999999999999999885 468999999999864
Q ss_pred c---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 128 S---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 128 ~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
. ...+.++.+-|+..+...+||+|-+.|+..-. ..+...++.+..+++.++.++|++..|+++. +||||||
T Consensus 68 ~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPY-SqGRlt~eD~~~I~~aieyl~L~~l~dryLd-----~LSGGQr 141 (252)
T COG4604 68 TPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPY-SQGRLTKEDRRIINEAIEYLHLEDLSDRYLD-----ELSGGQR 141 (252)
T ss_pred CChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcc-cCCCCchHHHHHHHHHHHHhcccchHHHhHH-----hcccchh
Confidence 2 34456678889988888999999999984322 2234456778899999999999999998886 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
||.-||+.|+++.+.++||||.+.||...+.++|+.|++++++ |+||+++.||... +..++|+|+-|++|+++..|++
T Consensus 142 QRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv~~G~~ 220 (252)
T COG4604 142 QRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVVKQGSP 220 (252)
T ss_pred hhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEEecCCH
Confidence 9999999999999999999999999999999999999999976 9999999999997 6789999999999999999999
Q ss_pred cchhh
Q 003437 284 VALPA 288 (820)
Q Consensus 284 ~~~~~ 288 (820)
+++++
T Consensus 221 ~eii~ 225 (252)
T COG4604 221 DEIIQ 225 (252)
T ss_pred HHhcC
Confidence 98864
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=338.48 Aligned_cols=210 Identities=33% Similarity=0.533 Sum_probs=174.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|+++.|+++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~----------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 69 (220)
T cd03245 2 RIEFRNVSFSYPNQ----------EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIR 69 (220)
T ss_pred eEEEEEEEEEcCCC----------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhH
Confidence 38999999998531 1359999999999999999999999999999999999875 46899999999874
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG------NEGRR 197 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig------~~~~~ 197 (820)
. ...++.++|++|++.+++ .||.||+.+.... .. .+++.++++.+++.+..++.+. ...+.
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 3 123457899999998887 5999999764211 11 2346678888888776665431 11245
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ .|||++||+++. + ++||++++|++|++
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~-~-~~~d~v~~l~~g~i 216 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSL-L-DLVDRIIVMDSGRI 216 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHH-H-HhCCEEEEEeCCeE
Confidence 79999999999999999999999999999999999999999999999764 899999999974 5 68999999999999
Q ss_pred EEEc
Q 003437 278 VYMG 281 (820)
Q Consensus 278 v~~G 281 (820)
++.|
T Consensus 217 ~~~~ 220 (220)
T cd03245 217 VADG 220 (220)
T ss_pred eecC
Confidence 8754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-40 Score=387.60 Aligned_cols=214 Identities=27% Similarity=0.389 Sum_probs=181.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|.. ++++|+|+|+++++||.+||+||||||||||+++|+|++ | .+|+|.+||.++.
T Consensus 349 ~i~~~~vsf~~~~-----------~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~i~ 414 (588)
T PRK11174 349 TIEAEDLEILSPD-----------GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIELR 414 (588)
T ss_pred eEEEEeeEEeccC-----------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEecc
Confidence 5999999986632 135999999999999999999999999999999999988 5 4799999999886
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~ 196 (820)
. ...++.++||+|++.+|+. |++|||.++.. ..++++ +.++++..++ ++..||.+|+.+
T Consensus 415 ~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~-----~~~~ee----i~~al~~a~l~~~i~~lp~G~dT~vge~G- 483 (588)
T PRK11174 415 ELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNP-----DASDEQ----LQQALENAWVSEFLPLLPQGLDTPIGDQA- 483 (588)
T ss_pred cCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCC-----CCCHHH----HHHHHHHhCHHHHHHhcccccccccccCC-
Confidence 4 3467889999999999987 99999998621 234433 4444444443 456789998754
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||++|||||+++|++||||||||+||+.+...+.+.|+++. +++|+|+++|+++. ...||+|++|++|+
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~--i~~aD~Iivl~~G~ 560 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLED--LAQWDQIWVMQDGQ 560 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHH--HHhCCEEEEEeCCe
Confidence 5699999999999999999999999999999999999999999999885 47999999999964 45699999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
+++.|+.+++.+
T Consensus 561 i~e~G~~~eL~~ 572 (588)
T PRK11174 561 IVQQGDYAELSQ 572 (588)
T ss_pred EeecCCHHHHHh
Confidence 999999888754
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=384.27 Aligned_cols=223 Identities=28% Similarity=0.388 Sum_probs=189.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|.... ....+|+||||++++||+++|+||||||||||+|+|+|++.+ .+|+|.++|..+.
T Consensus 12 ~l~v~~l~~~y~~~~--------~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p--~~G~i~~~g~~~~ 81 (623)
T PRK10261 12 VLAVENLNIAFMQEQ--------QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ--AGGLVQCDKMLLR 81 (623)
T ss_pred eEEEeceEEEecCCC--------CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCeEEEECCEEec
Confidence 599999999995321 123599999999999999999999999999999999999854 5799999997541
Q ss_pred C-------------c---cc-cceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc--
Q 003437 127 T-------------S---YM-KMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-- 185 (820)
Q Consensus 127 ~-------------~---~~-~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-- 185 (820)
. . .. ++.+|||+|++ .+++.+||.||+.++..... ..+..+.++++.++++.+||.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~ 159 (623)
T PRK10261 82 RRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQ 159 (623)
T ss_pred cccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChh
Confidence 0 0 11 24689999997 68899999999999865421 2355566788999999999964
Q ss_pred -cccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHH
Q 003437 186 -ATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQ 263 (820)
Q Consensus 186 -~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~ 263 (820)
..++++ .+|||||||||+||+||+.+|++|||||||++||+.++.++.++|++++++ |.|||++||++.. +.
T Consensus 160 ~~~~~~~-----~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~-~~ 233 (623)
T PRK10261 160 TILSRYP-----HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGV-VA 233 (623)
T ss_pred hHHhCCC-----ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH-HH
Confidence 345554 479999999999999999999999999999999999999999999999865 9999999999974 78
Q ss_pred hhcCEEEEEeCCeEEEEcCccchh
Q 003437 264 MLLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 264 ~~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
++||||++|++|++++.|+++++.
T Consensus 234 ~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 234 EIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred HhCCEEEEeeCCeecccCCHHHhh
Confidence 899999999999999999987764
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=385.87 Aligned_cols=217 Identities=28% Similarity=0.420 Sum_probs=184.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+|+|++. ++.+|+|+|++|++||.++|+|+||||||||+|+|+|+++ +.+|+|.+||.++.
T Consensus 341 ~i~~~~vsf~y~~~----------~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 408 (582)
T PRK11176 341 DIEFRNVTFTYPGK----------EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGHDLR 408 (582)
T ss_pred eEEEEEEEEecCCC----------CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCEEhh
Confidence 59999999999642 2459999999999999999999999999999999999985 46799999999986
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLG-------LRSATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~ig~~~~ 196 (820)
. ..+++.++||+|++.+|+. |++|||.++. +...++ +++.++++..| |++..||.+|+.+
T Consensus 409 ~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g- 478 (582)
T PRK11176 409 DYTLASLRNQVALVSQNVHLFND-TIANNIAYAR----TEQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGENG- 478 (582)
T ss_pred hcCHHHHHhhceEEccCceeecc-hHHHHHhcCC----CCCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCCCC-
Confidence 4 2456789999999999986 9999998752 111233 34555566555 3455788898654
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||++|||||+++|++|+||||||+||+.+...+++.|+++. +++|+|++||+++. .+.||+|++|++|+
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~~--~~~~D~Ii~l~~g~ 555 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLST--IEKADEILVVEDGE 555 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHH--HHhCCEEEEEECCE
Confidence 5799999999999999999999999999999999999999999999985 47999999999963 56799999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
+++.|+.+++.+
T Consensus 556 i~e~g~~~~l~~ 567 (582)
T PRK11176 556 IVERGTHAELLA 567 (582)
T ss_pred EEEeCCHHHHHh
Confidence 999999888753
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=391.98 Aligned_cols=213 Identities=32% Similarity=0.463 Sum_probs=183.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+|+|+.. ++.+|+|+|++|++||.+||+|+||||||||+|+|+|++. +.+|+|++||+++.
T Consensus 451 ~I~~~nvsf~Y~~~----------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i~ 518 (686)
T TIGR03797 451 AIEVDRVTFRYRPD----------GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQDLA 518 (686)
T ss_pred eEEEEEEEEEcCCC----------CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcC
Confidence 59999999999632 2459999999999999999999999999999999999985 46899999999986
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-------ATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~ 196 (820)
. ...++.+|||+|++.+|+. |++|||.++.. .+. +++.++++..|+.+ ..||.+|+.+
T Consensus 519 ~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~------~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige~G- 586 (686)
T TIGR03797 519 GLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP------LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISEGG- 586 (686)
T ss_pred cCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC------CCH----HHHHHHHHHcCcHHHHHhccccccccccCCC-
Confidence 4 3467889999999999987 99999987521 222 34566666666653 4678888654
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||++|||||+++|++||||||||+||+.+..++.+.|+++ ++|+|+++|+++. .+.||+|++|++|+
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~--i~~~D~Iivl~~G~ 661 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLST--IRNADRIYVLDAGR 661 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHH--HHcCCEEEEEECCE
Confidence 679999999999999999999999999999999999999999999886 5799999999964 45699999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
+++.|+.+++.+
T Consensus 662 iv~~G~~~~Ll~ 673 (686)
T TIGR03797 662 VVQQGTYDELMA 673 (686)
T ss_pred EEEECCHHHHHh
Confidence 999999988753
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=308.24 Aligned_cols=216 Identities=28% Similarity=0.455 Sum_probs=191.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|+++.|+.. ++|.|++++.+.||.+.++||||||||||++.|.-+.. +.+|+..|-|...+
T Consensus 2 sirv~~in~~yg~~------------q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~fd 67 (242)
T COG4161 2 SIQLNGINCFYGAH------------QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFD 67 (242)
T ss_pred ceEEcccccccccc------------hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEecccccc
Confidence 48899999999653 48999999999999999999999999999999987654 46899999887654
Q ss_pred C---------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 003437 127 T---------SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 127 ~---------~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
- ...|+.+|+|+|+..++|++||.|||.-+. ++. .++++++.+.++.++|+++.|.+.+|+..-
T Consensus 68 ~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~pl----- 140 (242)
T COG4161 68 FSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYPL----- 140 (242)
T ss_pred cccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCce-----
Confidence 2 135677899999999999999999997653 222 257888899999999999999999888754
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.|||||+|||+|||||+.+|++|++||||++|||+-..++++++++|+..|.|-+++||..+. +...+.+|+.|++|+|
T Consensus 141 hlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v-a~k~as~vvyme~g~i 219 (242)
T COG4161 141 HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV-ARKTASRVVYMENGHI 219 (242)
T ss_pred ecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH-HHhhhhheEeeecCee
Confidence 699999999999999999999999999999999999999999999999999999999999875 7788999999999999
Q ss_pred EEEcCcc
Q 003437 278 VYMGSPV 284 (820)
Q Consensus 278 v~~G~~~ 284 (820)
|+.|+.+
T Consensus 220 ve~g~a~ 226 (242)
T COG4161 220 VEQGDAS 226 (242)
T ss_pred Eeecchh
Confidence 9999864
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=336.56 Aligned_cols=209 Identities=29% Similarity=0.425 Sum_probs=175.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +++|+|.++|.++.
T Consensus 7 ~i~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 72 (225)
T PRK10247 7 LLQLQNVGYLAGD------------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDIS 72 (225)
T ss_pred eEEEeccEEeeCC------------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEcC
Confidence 5999999999853 249999999999999999999999999999999999874 46899999999875
Q ss_pred Cc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCChH
Q 003437 127 TS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSGG 202 (820)
.. ..++.++|++|++.+++. ||+||+.+....+. .. ...++++++++.+||. ...++.+. .||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~LS~G 141 (225)
T PRK10247 73 TLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILTKNIA-----ELSGG 141 (225)
T ss_pred cCCHHHHHhccEEEecccccccc-cHHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhcCCcc-----cCCHH
Confidence 32 234678999999988875 99999988654321 11 1235678899999996 45566554 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEe-CCeEEEE
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLA-RGRLVYM 280 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~-~G~iv~~ 280 (820)
|||||+||++|+.+|++|||||||+|||+.++..+.++|+++++ .|.|||+++|+++. +. .||++++|+ ++..+.+
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~~-~~d~i~~l~~~~~~~~~ 219 (225)
T PRK10247 142 EKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-IN-HADKVITLQPHAGEMQE 219 (225)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-HH-hCCEEEEEecccchHhh
Confidence 99999999999999999999999999999999999999999976 48999999999975 54 699999995 5656655
Q ss_pred cC
Q 003437 281 GS 282 (820)
Q Consensus 281 G~ 282 (820)
|.
T Consensus 220 ~~ 221 (225)
T PRK10247 220 AR 221 (225)
T ss_pred hh
Confidence 54
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=347.97 Aligned_cols=225 Identities=23% Similarity=0.377 Sum_probs=183.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC---CCCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ---GSLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~---~~~~G~I~i~G~ 123 (820)
.|+++||++.|++ +.+|+++|++|++||+++|+|||||||||||++|+|++.+ .+.+|+|.++|.
T Consensus 45 ~l~i~nl~~~~~~------------~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~ 112 (305)
T PRK14264 45 KLSVEDLDVYYGD------------DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQ 112 (305)
T ss_pred eEEEEEEEEEeCC------------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCE
Confidence 5999999999853 2499999999999999999999999999999999998752 247899999999
Q ss_pred eCCC-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC---------CCCC-HHHHHHHHHHHHHHcCCCcccc
Q 003437 124 PVTT-----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP---------PSIS-RDEKKKRVYELLDQLGLRSATH 188 (820)
Q Consensus 124 ~~~~-----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~---------~~~~-~~~~~~~v~~~l~~lgL~~~~~ 188 (820)
++.. ...++.++|++|++.+++. ||+||+.+....+.. .... .....+++.++++.++|.+...
T Consensus 113 ~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 191 (305)
T PRK14264 113 DIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN 191 (305)
T ss_pred EcccccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh
Confidence 8753 1234678999999988885 999999987542110 0011 2233567889999999854222
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCE
Q 003437 189 TYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 189 ~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 268 (820)
... +..++.|||||||||+||++|+++|+||||||||+|||+.++..+.++|+++++ +.|||+++|+++. +.++||+
T Consensus 192 ~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~-i~~~~d~ 268 (305)
T PRK14264 192 DRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQ-AARISDQ 268 (305)
T ss_pred HHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHH-HHHhcCE
Confidence 222 233467999999999999999999999999999999999999999999999977 4899999999985 7789999
Q ss_pred E-EEEeCCeEEEEcCccchh
Q 003437 269 I-IVLARGRLVYMGSPVALP 287 (820)
Q Consensus 269 v-~lL~~G~iv~~G~~~~~~ 287 (820)
+ ++|++|++++.|+++++.
T Consensus 269 i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 269 TAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred EEEEecCCEEEEeCCHHHHH
Confidence 6 578999999999887653
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=395.13 Aligned_cols=224 Identities=29% Similarity=0.472 Sum_probs=189.7
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...++++||+|+|+.++ +..||+|+|+.|++|+.+||+|||||||||++++|.+++. |++|+|++||.+
T Consensus 348 ~g~ief~nV~FsYPsRp---------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd--P~~G~V~idG~d 416 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSRP---------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD--PTSGEVLIDGED 416 (1228)
T ss_pred ccceEEEEEEecCCCCC---------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCceEEEcCcc
Confidence 44699999999998653 4579999999999999999999999999999999999885 568999999999
Q ss_pred CCC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH---HHHcCCCccccccccCCCCCC
Q 003437 125 VTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYEL---LDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 125 ~~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~---l~~lgL~~~~~~~ig~~~~~~ 198 (820)
+.. ...|..+|.|.|+|.||.. |++||+.|+.. +.+.++..+..+.. --...|.+..||.+|+.++ +
T Consensus 417 i~~~~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~~-----dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~-q 489 (1228)
T KOG0055|consen 417 IRNLNLKWLRSQIGLVSQEPVLFAT-TIRENIRYGKP-----DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV-Q 489 (1228)
T ss_pred chhcchHHHHhhcCeeeechhhhcc-cHHHHHhcCCC-----cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC-C
Confidence 865 3467789999999999975 99999998742 23444433322111 1123557788999998766 4
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||++|||||+.+|+|||||||||+||+.+...|.+.|.+.. +|+|.|+++|+++. +.. +|+|++|++|+|+
T Consensus 490 LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLSt-Irn-aD~I~v~~~G~Iv 566 (1228)
T KOG0055|consen 490 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLST-IRN-ADKIAVMEEGKIV 566 (1228)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhh-hhc-cCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998865 58999999999985 665 9999999999999
Q ss_pred EEcCccchhhh
Q 003437 279 YMGSPVALPAH 289 (820)
Q Consensus 279 ~~G~~~~~~~~ 289 (820)
+.|+++|++..
T Consensus 567 E~G~h~ELi~~ 577 (1228)
T KOG0055|consen 567 EQGTHDELIAL 577 (1228)
T ss_pred EecCHHHHHhc
Confidence 99999999753
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=330.38 Aligned_cols=199 Identities=26% Similarity=0.362 Sum_probs=172.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++ +++|+|.++|.++..
T Consensus 2 l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~~ 67 (204)
T PRK13538 2 LEARNLACERDE------------RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIRR 67 (204)
T ss_pred eEEEEEEEEECC------------EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccc
Confidence 789999999853 248999999999999999999999999999999999885 468999999998753
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 --SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 --~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
...++.++|++|++.+++.+||.||+.+....+. . ...++++++++.+||.+..++.+. .|||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~q 136 (204)
T PRK13538 68 QRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPVR-----QLSAGQQR 136 (204)
T ss_pred chHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCChh-----hcCHHHHH
Confidence 2245668999999999999999999998764321 1 234678899999999877777654 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
|++||++|+++|++|||||||+|||+.++..+.++|++++++|.|||++||+++. +....+|++.+
T Consensus 137 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 137 RVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh-hccCCceEEec
Confidence 9999999999999999999999999999999999999998778999999999985 66656677766
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=376.81 Aligned_cols=231 Identities=28% Similarity=0.419 Sum_probs=189.5
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|+....... .....+.+|+|+||+|++||+++|+||||||||||+|+|+|+++ .+|+|+++|+++
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~-~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i 349 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILK-RTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPL 349 (529)
T ss_pred CcccccCcEEEeecCccccc-cccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEc
Confidence 35999999999952110000 00012459999999999999999999999999999999999873 589999999987
Q ss_pred CCc------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 003437 126 TTS------YMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGR 196 (820)
Q Consensus 126 ~~~------~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~ 196 (820)
... ..++.++||+|++ .+++.+||.||+.++...+.. ..+..+.++++.++++.+||. +..++.++
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 424 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYPA---- 424 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCCc----
Confidence 531 1245689999996 488889999999987543211 123444567889999999997 45666664
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..++++|++++++ |.|||++||++.. +.++||++++|++|
T Consensus 425 -~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~-~~~~~d~i~~l~~G 502 (529)
T PRK15134 425 -EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHV-VRALCHQVIVLRQG 502 (529)
T ss_pred -cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHHhcCeEEEEECC
Confidence 69999999999999999999999999999999999999999999999875 8999999999975 78899999999999
Q ss_pred eEEEEcCccchh
Q 003437 276 RLVYMGSPVALP 287 (820)
Q Consensus 276 ~iv~~G~~~~~~ 287 (820)
++++.|+++++.
T Consensus 503 ~i~~~~~~~~~~ 514 (529)
T PRK15134 503 EVVEQGDCERVF 514 (529)
T ss_pred EEEEEcCHHHHh
Confidence 999999887764
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=339.75 Aligned_cols=215 Identities=28% Similarity=0.440 Sum_probs=172.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|++++|++. +.+|+|+|+++++||+++|+|||||||||||++|+|+++ +.+|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~-----------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (229)
T cd03254 2 EIEFENVNFSYDEK-----------KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIR 68 (229)
T ss_pred eEEEEEEEEecCCC-----------CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeHH
Confidence 48999999998521 249999999999999999999999999999999999985 46899999999875
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc------cCCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYI------GNEGRR 197 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~i------g~~~~~ 197 (820)
. ...++.++|++|++.+++. ||+||+.+.... ... .++.+.++.+++.+..+... -+..+.
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 138 (229)
T cd03254 69 DISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENGG 138 (229)
T ss_pred HcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCCC
Confidence 3 2245668999999988876 999999875321 111 22334444444433222210 012245
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||+++. +. .||++++|++|++
T Consensus 139 ~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~~-~~d~i~~l~~g~~ 215 (229)
T cd03254 139 NLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-IK-NADKILVLDDGKI 215 (229)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-Hh-hCCEEEEEeCCeE
Confidence 799999999999999999999999999999999999999999999996 58999999999975 54 5999999999999
Q ss_pred EEEcCccchh
Q 003437 278 VYMGSPVALP 287 (820)
Q Consensus 278 v~~G~~~~~~ 287 (820)
++.|+.+++.
T Consensus 216 ~~~~~~~~~~ 225 (229)
T cd03254 216 IEEGTHDELL 225 (229)
T ss_pred EEeCCHHHHH
Confidence 9988876654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=359.44 Aligned_cols=218 Identities=30% Similarity=0.423 Sum_probs=195.7
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+++||+|+|++ .++|++|||++++||++||+|.||||||||+|+|+|.++ +++|+|.+||++
T Consensus 6 ~~ll~~~~i~K~Fgg------------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~ 71 (500)
T COG1129 6 PPLLELRGISKSFGG------------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKP 71 (500)
T ss_pred cceeeeecceEEcCC------------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEE
Confidence 346999999999964 359999999999999999999999999999999999885 578999999999
Q ss_pred CCCc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 125 VTTS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 125 ~~~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
.... ....-++.|+|+..|.|+|||.|||.++...+.+ .-++++...+++.++|+.+|+....+++++ +|
T Consensus 72 ~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~L 146 (500)
T COG1129 72 VAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DL 146 (500)
T ss_pred ccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hC
Confidence 8632 2345588999999999999999999988765431 236778888999999999999655888887 59
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
|+||||.|+||+||..+++||||||||+.|+......+++++++|+++|.+||++||.++ +++++||||.+|++|+.+.
T Consensus 147 siaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~ 225 (500)
T COG1129 147 SIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVVG 225 (500)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeCCEEee
Confidence 999999999999999999999999999999999999999999999999999999999997 5999999999999999998
Q ss_pred EcC
Q 003437 280 MGS 282 (820)
Q Consensus 280 ~G~ 282 (820)
.++
T Consensus 226 ~~~ 228 (500)
T COG1129 226 TRP 228 (500)
T ss_pred ecc
Confidence 887
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=363.44 Aligned_cols=216 Identities=33% Similarity=0.545 Sum_probs=187.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.++++||+|+|++++ .++|+|+||++++||.+||+|+||||||||++.|+|... +.+|+|.+||.++.
T Consensus 336 ~l~~~~vsF~y~~~~----------~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~~ 403 (573)
T COG4987 336 ALELRNVSFTYPGQQ----------TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEIA 403 (573)
T ss_pred eeeeccceeecCCCc----------cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcChh
Confidence 699999999998653 469999999999999999999999999999999999875 56899999999875
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-------ATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~ 196 (820)
. ...++.+++++|...+|.+ |+++||.++.. +.+. +.+.++++.+||++ .+|+.+|+ ..
T Consensus 404 ~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~-----~AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lge-~G 472 (573)
T COG4987 404 SLDEQALRETISVLTQRVHLFSG-TLRDNLRLANP-----DASD----EELWAALQQVGLEKLLESAPDGLNTWLGE-GG 472 (573)
T ss_pred hCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCC-----CCCH----HHHHHHHHHcCHHHHHHhChhhhhchhcc-CC
Confidence 3 3356778999999999987 99999987632 2333 45667788888765 45667775 45
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
+.||||||||++|||+|+++.++++|||||.|||+.+.+++++.|.+-++ |+|+|++||+... .+.||||++|++|+
T Consensus 473 ~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~Gk 549 (573)
T COG4987 473 RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGK 549 (573)
T ss_pred CcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEECCe
Confidence 67999999999999999999999999999999999999999999998765 8999999999975 45799999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
++++|...++..
T Consensus 550 iie~G~~~~Ll~ 561 (573)
T COG4987 550 IIEEGTHAELLA 561 (573)
T ss_pred eeecCCHHhhhc
Confidence 999999988864
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=373.99 Aligned_cols=225 Identities=26% Similarity=0.397 Sum_probs=188.0
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|+.. +++.+|+|+||+|++||+++|+||||||||||+|+|+|++++ +++|+|.++|+++
T Consensus 258 ~~l~~~~l~~~~~~~---------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~ 327 (506)
T PRK13549 258 VILEVRNLTAWDPVN---------PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPV 327 (506)
T ss_pred ceEEEecCccccccc---------cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEEC
Confidence 359999999988421 013499999999999999999999999999999999999752 3689999999987
Q ss_pred CCc----cccceEEEEccCC---CCCCCCCHHHHHHHHHHhcCCC-C-CCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 003437 126 TTS----YMKMVSSYVMQDD---QLFPMLTVFETFMFAAEVRLPP-S-ISRDEKKKRVYELLDQLGLR-SATHTYIGNEG 195 (820)
Q Consensus 126 ~~~----~~~~~~gyv~Q~~---~l~~~lTV~e~l~~~~~~~~~~-~-~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~ 195 (820)
... ..++.++||+|++ .+++.+||.||+.+........ . .+.++..++++++++.+||. +..++.++
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 404 (506)
T PRK13549 328 KIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIA--- 404 (506)
T ss_pred CCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccc---
Confidence 531 1245689999985 4788899999998764211100 0 13344456789999999996 56777765
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++|+|||++|||++. +.++||++++|++|
T Consensus 405 --~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~-~~~~~d~v~~l~~G 481 (506)
T PRK13549 405 --RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPE-VLGLSDRVLVMHEG 481 (506)
T ss_pred --cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHH-HHHhCCEEEEEECC
Confidence 699999999999999999999999999999999999999999999998889999999999974 78899999999999
Q ss_pred eEEEEcCccch
Q 003437 276 RLVYMGSPVAL 286 (820)
Q Consensus 276 ~iv~~G~~~~~ 286 (820)
+++..|+++++
T Consensus 482 ~i~~~~~~~~~ 492 (506)
T PRK13549 482 KLKGDLINHNL 492 (506)
T ss_pred EEEEEeccccC
Confidence 99999987765
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=327.66 Aligned_cols=190 Identities=29% Similarity=0.441 Sum_probs=162.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+....+.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~ 68 (200)
T cd03217 1 LEIKDLHVSVGG------------KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68 (200)
T ss_pred CeEEEEEEEeCC------------EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCc
Confidence 578999999853 24999999999999999999999999999999999985223578999999998864
Q ss_pred c---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 128 S---Y-MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 128 ~---~-~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
. . .+..++|++|++.+++.+|+++++. . . .+.|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~-~----~~~LS~G~ 109 (200)
T cd03217 69 LPPEERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------Y-V----NEGFSGGE 109 (200)
T ss_pred CCHHHHhhCcEEEeecChhhccCccHHHHHh----------------------------------h-c----cccCCHHH
Confidence 2 1 2345899999999898888887650 0 1 12599999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHh-hcCEEEEEeCCeEEEEcC
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQM-LLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~-~~D~v~lL~~G~iv~~G~ 282 (820)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++. +.. +||++++|++|++++.|+
T Consensus 110 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~-~~~~~~d~i~~l~~G~i~~~~~ 188 (200)
T cd03217 110 KKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRL-LDYIKPDRVHVLYDGRIVKSGD 188 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhhCCEEEEEECCEEEEEcc
Confidence 999999999999999999999999999999999999999998779999999999974 666 799999999999999994
Q ss_pred ccchhhhh
Q 003437 283 PVALPAHL 290 (820)
Q Consensus 283 ~~~~~~~f 290 (820)
. ++...+
T Consensus 189 ~-~~~~~~ 195 (200)
T cd03217 189 K-ELALEI 195 (200)
T ss_pred H-HHHhhh
Confidence 4 454444
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=328.38 Aligned_cols=196 Identities=27% Similarity=0.377 Sum_probs=171.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|++ +.+|+|+|++|++||+++|+|+||||||||+++|+|+++ +.+|+|.++|.++..
T Consensus 1 l~i~~l~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (201)
T cd03231 1 LEADELTCERDG------------RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDF 66 (201)
T ss_pred CEEEEEEEEeCC------------ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 578999999853 248999999999999999999999999999999999885 468999999998743
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 --SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 --~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
...++.++|++|++.+++.+||+||+.+.... . ..++++++++.+||.+..++.+. .|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 132 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPVA-----QLSAGQQR 132 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCchh-----hCCHHHHH
Confidence 23456789999999898899999999875321 1 24567899999999887777654 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
|++||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++.. ....||+++++
T Consensus 133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~~~~~~~ 198 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG-LSEAGARELDL 198 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchh-hhhccceeEec
Confidence 9999999999999999999999999999999999999998789999999999875 67789999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=345.11 Aligned_cols=215 Identities=21% Similarity=0.344 Sum_probs=180.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|... ...+|+|+|++|++||+++|+||||||||||+++|+|++. .+|+|+++|.++.
T Consensus 2 ~i~~~nls~~~~~~----------~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~ 68 (275)
T cd03289 2 QMTVKDLTAKYTEG----------GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWN 68 (275)
T ss_pred eEEEEEEEEEeCCC----------CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhh
Confidence 48999999999532 1349999999999999999999999999999999999984 4799999999875
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------CCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGN------EGRR 197 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~------~~~~ 197 (820)
. ...++.++||+|++.+|+. ||+||+..... .+ .+++.++++.+||.+..+..++. +...
T Consensus 69 ~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~------~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~ 137 (275)
T cd03289 69 SVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGK------WS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGC 137 (275)
T ss_pred hCCHHHHhhhEEEECCCcccchh-hHHHHhhhccC------CC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCC
Confidence 3 2346679999999999985 99999964211 12 23567788889997655554431 1234
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++. .++|||+++|+++. +. .||||++|++|++
T Consensus 138 ~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~-i~-~~dri~vl~~G~i 214 (275)
T cd03289 138 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEA-ML-ECQRFLVIEENKV 214 (275)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHH-HH-hCCEEEEecCCeE
Confidence 699999999999999999999999999999999999999999999875 48999999999964 55 4999999999999
Q ss_pred EEEcCccchhh
Q 003437 278 VYMGSPVALPA 288 (820)
Q Consensus 278 v~~G~~~~~~~ 288 (820)
++.|+++++..
T Consensus 215 ~~~g~~~~l~~ 225 (275)
T cd03289 215 RQYDSIQKLLN 225 (275)
T ss_pred eecCCHHHHhh
Confidence 99999988864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=334.08 Aligned_cols=202 Identities=26% Similarity=0.403 Sum_probs=170.3
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|.++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+ +++|+|.++|+++..
T Consensus 23 l~~~~~~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 88 (224)
T cd03220 23 LGILGRKGEVGE------------FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL 88 (224)
T ss_pred hhhhhhhhhcCC------------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh
Confidence 566666666643 459999999999999999999999999999999999875 468999999987531
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRV 207 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv 207 (820)
..+...+.+.+||+||+.+..... ..+..+.++++.++++.+||++..++.++ .||||||||+
T Consensus 89 ---------~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv 151 (224)
T cd03220 89 ---------LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVK-----TYSSGMKARL 151 (224)
T ss_pred ---------hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHH
Confidence 111223456789999998876532 12344556678899999999888877765 6999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 208 ~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+++. +..++|++++|++|++++.|
T Consensus 152 ~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 152 AFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS-IKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999998778999999999874 77889999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=406.55 Aligned_cols=223 Identities=28% Similarity=0.448 Sum_probs=198.0
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|+++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++
T Consensus 927 ~~L~I~nLsK~y~~~----------~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~dI 994 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS----------GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKDI 994 (2272)
T ss_pred ceEEEEeEEEEecCC----------CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 369999999999521 2359999999999999999999999999999999999985 4689999999998
Q ss_pred CCc--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 126 TTS--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 126 ~~~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
... ..++.+||++|++.+++.+||+||+.|.++++ +.+.++.+++++++++.+||++..|+.++ +|||||
T Consensus 995 ~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~LSGGq 1066 (2272)
T TIGR01257 995 ETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEAQ-----DLSGGM 1066 (2272)
T ss_pred cchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHH
Confidence 532 24567899999999999999999999987765 23445566789999999999988888775 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
||||+||+||+.+|++|||||||+|||+.+++.+.++|++++ +|+|||++||+++ ++..+||||++|++|+++..|++
T Consensus 1067 KQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~ 1144 (2272)
T TIGR01257 1067 QRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTP 1144 (2272)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999999999999995 5999999999997 47889999999999999999999
Q ss_pred cchhhhh
Q 003437 284 VALPAHL 290 (820)
Q Consensus 284 ~~~~~~f 290 (820)
.++.+.+
T Consensus 1145 ~~Lk~~~ 1151 (2272)
T TIGR01257 1145 LFLKNCF 1151 (2272)
T ss_pred HHHHHhc
Confidence 9887655
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=392.21 Aligned_cols=215 Identities=28% Similarity=0.424 Sum_probs=182.8
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+|+|+.. ++.+|+|+|++|++||.+||+||||||||||+|+|+|++. +.+|+|.+||.++
T Consensus 476 ~~I~~~~vsf~y~~~----------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i 543 (710)
T TIGR03796 476 GYVELRNITFGYSPL----------EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIPR 543 (710)
T ss_pred CeEEEEEEEEecCCC----------CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeH
Confidence 359999999999642 2459999999999999999999999999999999999985 4689999999998
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEG 195 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~ 195 (820)
.. ...++.++||+|++.+|+. |++|||.++. + ..+. +++.++++..|+. +..|+.+|+.+
T Consensus 544 ~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~----~-~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 544 EEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWD----P-TIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred HHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCC----C-CCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 54 3467889999999999986 9999998752 1 2233 3345555555554 35678888654
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
..||||||||++|||||+++|++||||||||+||+.+...+++.|++ .++|+|+++|+++. + ..||+|++|++|
T Consensus 614 -~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~-i-~~~D~Iivl~~G 687 (710)
T TIGR03796 614 -ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST-I-RDCDEIIVLERG 687 (710)
T ss_pred -CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHH-H-HhCCEEEEEeCC
Confidence 67999999999999999999999999999999999999999999986 48999999999974 4 569999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+.+++.+
T Consensus 688 ~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 688 KVVQRGTHEELWA 700 (710)
T ss_pred EEEEecCHHHHHH
Confidence 9999999988864
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=320.39 Aligned_cols=171 Identities=34% Similarity=0.584 Sum_probs=154.3
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+++|+++.+||+++|+||||||||||+++|+|+.+ +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (173)
T cd03230 1 IEVRNLSKRYGK------------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKK 66 (173)
T ss_pred CEEEEEEEEECC------------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEccc
Confidence 478999999853 248999999999999999999999999999999999875 468999999998753
Q ss_pred c--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 S--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 ~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
. ..++.++|++|++.+++.+||.||+. |||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 2 34567899999999999899999863 9999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||++.. +..+||++++|++|++
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~-~~~~~d~i~~l~~g~i 173 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEE-AERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH-HHHhCCEEEEEeCCCC
Confidence 9999999999999999999999999999999999999998779999999999874 7778999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=382.14 Aligned_cols=219 Identities=32% Similarity=0.488 Sum_probs=186.2
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+|.|++ ++++|+|+|+++++||.+||+||||||||||+|.|.|++.+ .+|+|.+||+++
T Consensus 327 ~~I~f~~vsf~y~~-----------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~dI 393 (567)
T COG1132 327 GSIEFENVSFSYPG-----------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGIDI 393 (567)
T ss_pred CeEEEEEEEEEcCC-----------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCEeh
Confidence 45999999999973 23599999999999999999999999999999999999854 689999999998
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHH-----HHHHHcCCCccccccccCCCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVY-----ELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~-----~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
.. ...|+.++||+||+.+|.. ||+|||.++.. ..++++..+.++ +.++ .+++..||.+|+. ..
T Consensus 394 ~~i~~~~lr~~I~~V~Qd~~LF~~-TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~--~lp~g~dt~vge~-G~ 464 (567)
T COG1132 394 RDISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRP-----DATDEEIEEALKLANAHEFIA--NLPDGYDTIVGER-GV 464 (567)
T ss_pred hhcCHHHHHHhccEEcccceeecc-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCcccccceecCC-Cc
Confidence 64 3467889999999999985 99999998742 234444433332 2233 3355789999954 45
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.||||||||++||||++++|++|+||||||+||+.+...+.+.++++. +++|+|+++|+++. +.. ||+|++|++|++
T Consensus 465 ~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst-i~~-aD~IiVl~~G~i 541 (567)
T COG1132 465 NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST-IKN-ADRIIVLDNGRI 541 (567)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH-HHh-CCEEEEEECCEE
Confidence 799999999999999999999999999999999999999999999887 56899999999974 554 999999999999
Q ss_pred EEEcCccchhhh
Q 003437 278 VYMGSPVALPAH 289 (820)
Q Consensus 278 v~~G~~~~~~~~ 289 (820)
++.|+++++...
T Consensus 542 ~e~G~h~eLl~~ 553 (567)
T COG1132 542 VERGTHEELLAK 553 (567)
T ss_pred EEecCHHHHHHc
Confidence 999999998753
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=380.17 Aligned_cols=215 Identities=25% Similarity=0.434 Sum_probs=185.1
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++|++++|+.. +++|+|+|+++++||.+||+|+||||||||+|+|+|+++| .+|+|.+||.++
T Consensus 339 ~~i~~~~v~f~y~~~-----------~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~i 405 (592)
T PRK10790 339 GRIDIDNVSFAYRDD-----------NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRPL 405 (592)
T ss_pred CeEEEEEEEEEeCCC-----------CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEh
Confidence 359999999999631 3499999999999999999999999999999999999854 579999999988
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEG 195 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~ 195 (820)
.. ...++.++||+|++.+|+. |++|||.++. ..+ ++++.++++.+|+. +..|+.+|+.
T Consensus 406 ~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~- 473 (592)
T PRK10790 406 SSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ- 473 (592)
T ss_pred hhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccCC-
Confidence 64 3467889999999999997 9999998863 122 23466677777754 4567888764
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
...||||||||++|||||+.+|++|+||||||+||+.+...+.+.|+++.+ ++|+|+++|+++. ...||+|++|++|
T Consensus 474 g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~~--l~~~D~ii~l~~G 550 (592)
T PRK10790 474 GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLST--IVEADTILVLHRG 550 (592)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHH--HHhCCEEEEEECC
Confidence 357999999999999999999999999999999999999999999999865 6999999999964 4569999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+.+++.+
T Consensus 551 ~i~~~G~~~~L~~ 563 (592)
T PRK10790 551 QAVEQGTHQQLLA 563 (592)
T ss_pred EEEEEcCHHHHHh
Confidence 9999999988853
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=341.17 Aligned_cols=234 Identities=32% Similarity=0.422 Sum_probs=202.7
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
+..|+.+||.+.|+-+.... ........++++||+++++||.++|+|.||||||||-.+|.+++.+ +|+|.|+|++
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~-~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~ 349 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFL-RRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQD 349 (534)
T ss_pred CceEEecceEEEEecCCccc-cccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCcc
Confidence 45699999999997653211 1122345699999999999999999999999999999999999853 5999999999
Q ss_pred CCCc------cccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 003437 125 VTTS------YMKMVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 125 ~~~~------~~~~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
++.. ..|+.+-.|||||. |.|.+||.+-+.-++....+ ..++.++.+++.++|+++||+... -+++|
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~----r~RYP 424 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPAT----RNRYP 424 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhH----hhcCC
Confidence 8742 34566789999984 89999999999999887754 478899999999999999997532 23556
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.+.|||||||++|||||+.+|++++||||||+||..-+.+|+++|++|.+ .|.+-++++||.. .+..+||+|+||++|
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~G 503 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRDG 503 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeCC
Confidence 78999999999999999999999999999999999999999999999975 5999999999997 588999999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
+||++|+.++++.
T Consensus 504 kiVE~G~~~~if~ 516 (534)
T COG4172 504 KIVEQGPTEAVFA 516 (534)
T ss_pred EEeeeCCHHHHhc
Confidence 9999999988864
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=371.82 Aligned_cols=224 Identities=23% Similarity=0.407 Sum_probs=186.3
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEEC-CEe
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRID-GKP 124 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~-G~~ 124 (820)
..|+++||+++|.+.. ...+.+|+|+||+|++||+++|+||||||||||+|+|+|+++ +++|+|.++ |.+
T Consensus 278 ~~l~~~~l~~~~~~~~-------~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~ 348 (520)
T TIGR03269 278 PIIKVRNVSKRYISVD-------RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDE 348 (520)
T ss_pred ceEEEeccEEEeccCC-------CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCc
Confidence 3699999999995310 012359999999999999999999999999999999999985 468999996 642
Q ss_pred ---CCCc------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-----ccccc
Q 003437 125 ---VTTS------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-----ATHTY 190 (820)
Q Consensus 125 ---~~~~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~ 190 (820)
+... ..++.++|++|++.+++.+||.||+.+...+. .+.++.++++.++++.+||.+ ..++.
T Consensus 349 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 424 (520)
T TIGR03269 349 WVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY 424 (520)
T ss_pred cccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC
Confidence 2211 12456899999998999999999998764321 233334567889999999975 34555
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEE
Q 003437 191 IGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRI 269 (820)
Q Consensus 191 ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v 269 (820)
+ .+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++|||+.. +.++||++
T Consensus 425 ~-----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~-~~~~~d~i 498 (520)
T TIGR03269 425 P-----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDF-VLDVCDRA 498 (520)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH-HHHhCCEE
Confidence 5 479999999999999999999999999999999999999999999999865 9999999999985 78899999
Q ss_pred EEEeCCeEEEEcCccchhh
Q 003437 270 IVLARGRLVYMGSPVALPA 288 (820)
Q Consensus 270 ~lL~~G~iv~~G~~~~~~~ 288 (820)
++|++|++++.|+++++..
T Consensus 499 ~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 499 ALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999998877643
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=378.55 Aligned_cols=217 Identities=31% Similarity=0.533 Sum_probs=186.4
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++. ++.+|+|+|+++++||.++|+||||||||||+|+|+|+.+ +.+|+|++||.++
T Consensus 337 ~~i~~~~v~f~y~~~----------~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--p~~G~I~i~g~~i 404 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ----------PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD--PQQGEILLNGQPI 404 (574)
T ss_pred CeEEEEEEEEECCCC----------CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEh
Confidence 459999999999642 1359999999999999999999999999999999999885 4689999999988
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc------cccccccCCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS------ATHTYIGNEGR 196 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------~~~~~ig~~~~ 196 (820)
.. ..+++.++||+|++.+|+. |++||+.++.. ..+ ++.+.++++.+++.+ ..||.+|+. .
T Consensus 405 ~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~-g 473 (574)
T PRK11160 405 ADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP-----NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEG-G 473 (574)
T ss_pred hhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC-----ccC----HHHHHHHHHHcCCHHHHcCccccCchhcCC-C
Confidence 64 3457789999999999986 99999987631 122 345677888888764 357888754 4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||++|||+|+++|++|+|||||++||+.++..+.+.|+++. +++|+|+++|+++. + ..||+|++|++|+
T Consensus 474 ~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~-~-~~~d~i~~l~~G~ 550 (574)
T PRK11160 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG-L-EQFDRICVMDNGQ 550 (574)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH-H-HhCCEEEEEeCCe
Confidence 5799999999999999999999999999999999999999999999986 48999999999974 4 4699999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
+++.|+.+++.+
T Consensus 551 i~~~g~~~~l~~ 562 (574)
T PRK11160 551 IIEQGTHQELLA 562 (574)
T ss_pred EEEeCCHHHHHh
Confidence 999999888754
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=337.44 Aligned_cols=213 Identities=31% Similarity=0.459 Sum_probs=170.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|++. +.+|+|+|++|++||+++|+||||||||||+++|+|+.+ +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~-----------~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~v~~~g~~~~~ 67 (236)
T cd03253 1 IEFENVTFAYDPG-----------RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD--VSSGSILIDGQDIRE 67 (236)
T ss_pred CEEEEEEEEeCCC-----------CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEhhh
Confidence 4789999998521 248999999999999999999999999999999999875 468999999998753
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCCCCC
Q 003437 128 ---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-------THTYIGNEGRR 197 (820)
Q Consensus 128 ---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~ig~~~~~ 197 (820)
...++.++|++|++.+++ .||+||+.+.... .+..+ +.+.++..++.+. .++.+ +..++
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~ 136 (236)
T cd03253 68 VTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEE----VIEAAKAAQIHDKIMRFPDGYDTIV-GERGL 136 (236)
T ss_pred CCHHHHHhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHH----HHHHHHHcCcHHHHHhccccccchh-hcCCC
Confidence 224566899999998886 5999999875321 12211 2222333333221 11112 12245
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++++ |+|||+++|+++. +. .||++++|++|++
T Consensus 137 ~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~~-~~d~~~~l~~g~i 213 (236)
T cd03253 137 KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-IV-NADKIIVLKDGRI 213 (236)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-HH-hCCEEEEEECCEE
Confidence 7999999999999999999999999999999999999999999999987 9999999999975 54 4999999999999
Q ss_pred EEEcCccchh
Q 003437 278 VYMGSPVALP 287 (820)
Q Consensus 278 v~~G~~~~~~ 287 (820)
++.|+.+++.
T Consensus 214 ~~~~~~~~~~ 223 (236)
T cd03253 214 VERGTHEELL 223 (236)
T ss_pred EeeCCHHHHh
Confidence 9988876554
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=336.57 Aligned_cols=202 Identities=28% Similarity=0.450 Sum_probs=173.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++ +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~~------------~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~---- 65 (251)
T PRK09544 4 LVSLENVSVSFGQ------------RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNG---- 65 (251)
T ss_pred EEEEeceEEEECC------------ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECC----
Confidence 5999999999953 249999999999999999999999999999999999885 4689999987
Q ss_pred CccccceEEEEccCCCCCCCC--CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPML--TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~l--TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
+..++|++|++.+++.+ |+.+++.+.. ... .+++.++++.+||.+..++.+. .||||||
T Consensus 66 ----~~~i~~v~q~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~ 126 (251)
T PRK09544 66 ----KLRIGYVPQKLYLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPMQ-----KLSGGET 126 (251)
T ss_pred ----ccCEEEeccccccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCChh-----hCCHHHH
Confidence 23589999998877753 7777764321 111 2457889999999887777654 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
|||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++. +.++||++++|+ |+++..|++
T Consensus 127 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~-i~~~~d~i~~l~-~~i~~~g~~ 204 (251)
T PRK09544 127 QRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHL-VMAKTDEVLCLN-HHICCSGTP 204 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEC-CceEeeCCH
Confidence 9999999999999999999999999999999999999999875 8999999999984 778999999996 479999988
Q ss_pred cchh
Q 003437 284 VALP 287 (820)
Q Consensus 284 ~~~~ 287 (820)
+++.
T Consensus 205 ~~~~ 208 (251)
T PRK09544 205 EVVS 208 (251)
T ss_pred HHHh
Confidence 7653
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=371.45 Aligned_cols=217 Identities=23% Similarity=0.414 Sum_probs=182.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.+. .+|+|+||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++
T Consensus 264 ~~l~~~~l~~~~~--------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~ 327 (510)
T PRK09700 264 TVFEVRNVTSRDR--------------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDI 327 (510)
T ss_pred cEEEEeCccccCC--------------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEEC
Confidence 3599999997641 28999999999999999999999999999999999885 4689999999987
Q ss_pred CCc----cccceEEEEccC---CCCCCCCCHHHHHHHHHHhc---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccc
Q 003437 126 TTS----YMKMVSSYVMQD---DQLFPMLTVFETFMFAAEVR---LPP--S-ISRDEKKKRVYELLDQLGLR-SATHTYI 191 (820)
Q Consensus 126 ~~~----~~~~~~gyv~Q~---~~l~~~lTV~e~l~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~i 191 (820)
... ..++.++||+|+ ..+++.+||.||+.+....+ ... . ......+++++++++.+||. +..++.+
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 407 (510)
T PRK09700 328 SPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI 407 (510)
T ss_pred CCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc
Confidence 531 124568999998 46889999999998764321 000 0 12233346788999999996 6777777
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEE
Q 003437 192 GNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 192 g~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
+ .|||||||||+||++|+.+|++|||||||+|||+.++..++++|++++++|.|||++|||+.. +..+||++++
T Consensus 408 ~-----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~-~~~~~d~i~~ 481 (510)
T PRK09700 408 T-----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPE-IITVCDRIAV 481 (510)
T ss_pred c-----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-HHhhCCEEEE
Confidence 5 699999999999999999999999999999999999999999999998889999999999974 7889999999
Q ss_pred EeCCeEEEEcCcc
Q 003437 272 LARGRLVYMGSPV 284 (820)
Q Consensus 272 L~~G~iv~~G~~~ 284 (820)
|++|+++..++..
T Consensus 482 l~~G~i~~~~~~~ 494 (510)
T PRK09700 482 FCEGRLTQILTNR 494 (510)
T ss_pred EECCEEEEEecCc
Confidence 9999999888663
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=334.77 Aligned_cols=221 Identities=22% Similarity=0.305 Sum_probs=185.4
Q ss_pred eEEEEEEEEEECcccccc--------cccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEE
Q 003437 47 GLEFKNLSYSIMKKQKKD--------GVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSV 118 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~--------~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I 118 (820)
.++++||+++|.....+. +......+.+|+++|++|++||+++|+||||||||||+++|+|+++ +.+|+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~I 81 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGKV 81 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEE
Confidence 489999999986532110 0112244679999999999999999999999999999999999885 467999
Q ss_pred EECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 119 RIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 119 ~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
.++|. +++++|+..+.+.+||.||+.+..... ..+.++..+.++++++.++|.+..++.++ .
T Consensus 82 ~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 143 (264)
T PRK13546 82 DRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPVK-----K 143 (264)
T ss_pred EECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----c
Confidence 99985 346777777778899999998765432 23445556677889999999887777654 6
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||||+||++|+.+|++|||||||+|||+.++..+++.|.++++.|+|||+++|++.. +.++||++++|++|+++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~-i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQ-VRQFCTKIAWIEGGKLK 222 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-HHHHcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999998789999999999874 77889999999999999
Q ss_pred EEcCccchhh
Q 003437 279 YMGSPVALPA 288 (820)
Q Consensus 279 ~~G~~~~~~~ 288 (820)
..|+++++..
T Consensus 223 ~~g~~~~~~~ 232 (264)
T PRK13546 223 DYGELDDVLP 232 (264)
T ss_pred EeCCHHHHHH
Confidence 9999877654
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=327.14 Aligned_cols=199 Identities=26% Similarity=0.393 Sum_probs=170.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+ +++|+|+++|.++.
T Consensus 2 ~l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 2 MLEGEDLACVRGG------------RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEEeEEEEECC------------eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 4899999999853 248999999999999999999999999999999999875 46899999998864
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
....++.++|++|++.+++.+||+||+.+....+. .. .+++.++++.+||.+..++.++ .||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPFG-----YLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCChh-----hcCHHHHHH
Confidence 22245678999999888888999999988654321 11 2357899999999876666654 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
++||++|+.+|++|||||||+|||+.+...+.+.|++++++|+|||++||++.. +.. |+++.+..
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~--~~~~~~~~ 200 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG-LPG--ARELDLGP 200 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh-hcc--CcEEeecC
Confidence 999999999999999999999999999999999999998889999999999874 554 88877744
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=387.15 Aligned_cols=216 Identities=28% Similarity=0.455 Sum_probs=181.0
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+|+|++.. ++.+|+|+|++|+|||.++|+||||||||||+|+|+|+++ +.+|+|.+||+++
T Consensus 477 ~~I~~~nVsf~Y~~~~---------~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i 545 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRP---------DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ--PTGGQVLLDGVPL 545 (711)
T ss_pred CeEEEEEEEEECCCCC---------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEH
Confidence 3599999999996421 2469999999999999999999999999999999999985 4689999999998
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEG 195 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~ 195 (820)
.. ...++.++||+|++.+|+. |++|||.++.. ..+ ++++.++++..++. +..||.+|+.
T Consensus 546 ~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~-----~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~- 614 (711)
T TIGR00958 546 VQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLT-----DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK- 614 (711)
T ss_pred HhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCC-----CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCC-
Confidence 64 3467789999999999986 99999987631 122 23455666666654 3468888764
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
...||||||||++|||||+++|+|||||||||+||+.+...+.+ .. ..+++|+|+++|+++. .+.||+|++|++|
T Consensus 615 G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~--i~~aD~IivL~~G 689 (711)
T TIGR00958 615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLST--VERADQILVLKKG 689 (711)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHH--HHhCCEEEEEECC
Confidence 35799999999999999999999999999999999999999988 22 2358999999999974 4569999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+.+++.+
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999988764
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=328.80 Aligned_cols=210 Identities=28% Similarity=0.410 Sum_probs=171.9
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEEC--CE--
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRID--GK-- 123 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~--G~-- 123 (820)
|+++||++.|+.+... ...+.+|+|+|++|++||+++|+||||||||||+++|+|+++ +++|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~~-----~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~~ 74 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQG-----GVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAWV 74 (224)
T ss_pred EEEEeeEEEeecccCC-----CcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCcc
Confidence 7899999999532100 001359999999999999999999999999999999999885 467999998 43
Q ss_pred eCCCc---c----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCC
Q 003437 124 PVTTS---Y----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEG 195 (820)
Q Consensus 124 ~~~~~---~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~ 195 (820)
++... . .++.++|++|++.+++.+||+|++.+..... +...++..+++.++++.+||.+. .+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 147 (224)
T TIGR02324 75 DLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPP---- 147 (224)
T ss_pred chhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCc----
Confidence 43211 1 1346899999999999999999998865432 23344455678899999999763 35544
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
.+||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++.. +..+||+++.+.
T Consensus 148 -~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~-~~~~~d~i~~~~ 223 (224)
T TIGR02324 148 -ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEV-RELVADRVMDVT 223 (224)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceeEecC
Confidence 4799999999999999999999999999999999999999999999998789999999999764 677899998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=368.91 Aligned_cols=224 Identities=25% Similarity=0.391 Sum_probs=186.3
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++|++++|... +++.+|+|+||++++||+++|+||||||||||||+|+|+++| +.+|+|.++|+++
T Consensus 256 ~~l~~~~l~~~~~~~---------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~ 325 (500)
T TIGR02633 256 VILEARNLTCWDVIN---------PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPV 325 (500)
T ss_pred ceEEEeCCccccccc---------ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEEC
Confidence 369999999987321 013499999999999999999999999999999999999853 3589999999987
Q ss_pred CCc----cccceEEEEccCC---CCCCCCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCCc-cccccccCCC
Q 003437 126 TTS----YMKMVSSYVMQDD---QLFPMLTVFETFMFAAEVRLP--PSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEG 195 (820)
Q Consensus 126 ~~~----~~~~~~gyv~Q~~---~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~ 195 (820)
... ..++.++||+|+. .+++.+||+||+.+...-... ......+.+++++++++.++|.+ ..++.++
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 402 (500)
T TIGR02633 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG--- 402 (500)
T ss_pred CCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccc---
Confidence 531 2345689999995 588999999999876421110 01233444567899999999974 5677765
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..++++|++++++|.|||++|||++. +.++||++++|++|
T Consensus 403 --~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~-~~~~~d~v~~l~~G 479 (500)
T TIGR02633 403 --RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAE-VLGLSDRVLVIGEG 479 (500)
T ss_pred --cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHH-HHHhCCEEEEEECC
Confidence 699999999999999999999999999999999999999999999998889999999999984 88899999999999
Q ss_pred eEEEEcCccc
Q 003437 276 RLVYMGSPVA 285 (820)
Q Consensus 276 ~iv~~G~~~~ 285 (820)
+++..++.++
T Consensus 480 ~i~~~~~~~~ 489 (500)
T TIGR02633 480 KLKGDFVNHA 489 (500)
T ss_pred EEEEEEcccc
Confidence 9998776543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=385.73 Aligned_cols=217 Identities=31% Similarity=0.499 Sum_probs=185.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+|+|++. .+++|+|+|++|++||.+||+|+||||||||+|+|+|++. +.+|+|.+||.++.
T Consensus 463 ~I~~~~vsf~Y~~~----------~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~l~ 530 (694)
T TIGR03375 463 EIEFRNVSFAYPGQ----------ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVDIR 530 (694)
T ss_pred eEEEEEEEEEeCCC----------CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEhh
Confidence 59999999999632 2359999999999999999999999999999999999985 46899999999986
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~ 196 (820)
. ...++.++||+|++.+|+. |++|||.++.. ..+++ ++.++++..|+ ++..||.+|+.+
T Consensus 531 ~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~-----~~~~~----~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G- 599 (694)
T TIGR03375 531 QIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP-----YADDE----EILRAAELAGVTEFVRRHPDGLDMQIGERG- 599 (694)
T ss_pred hCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC-----CCCHH----HHHHHHHHcChHHHHHhCcccccceecCCC-
Confidence 4 3467889999999999986 99999987521 22333 34455555544 445788888654
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||++|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+++|+++. .+.||+|++|++|+
T Consensus 600 ~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~~--~~~~D~iivl~~G~ 676 (694)
T TIGR03375 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTSL--LDLVDRIIVMDNGR 676 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH--HHhCCEEEEEeCCE
Confidence 57999999999999999999999999999999999999999999999864 7999999999974 46799999999999
Q ss_pred EEEEcCccchhhh
Q 003437 277 LVYMGSPVALPAH 289 (820)
Q Consensus 277 iv~~G~~~~~~~~ 289 (820)
+++.|+.+++++.
T Consensus 677 i~e~G~~~eLl~~ 689 (694)
T TIGR03375 677 IVADGPKDQVLEA 689 (694)
T ss_pred EEeeCCHHHHHHH
Confidence 9999999888754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=322.77 Aligned_cols=195 Identities=27% Similarity=0.371 Sum_probs=167.1
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+|+++.+||+++|+||||||||||+++|+|+++ +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (198)
T TIGR01189 1 LAARNLACSRGE------------RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAE 66 (198)
T ss_pred CEEEEEEEEECC------------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEccc
Confidence 578999999853 249999999999999999999999999999999999875 468999999998753
Q ss_pred c--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 S--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 ~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
. ..++.++|++|++.+++.+||.||+.+....+. . + .+++.++++.+||.+..++.++ .|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~-~-~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 134 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG-----G-A-QRTIEDALAAVGLTGFEDLPAA-----QLSAGQQR 134 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC-----C-c-HHHHHHHHHHcCCHHHhcCChh-----hcCHHHHH
Confidence 2 234568999999888888999999988654321 1 1 3467889999999887777765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEE
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++.. + .+++++.
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~-~--~~~~~~~ 197 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG-L--VEARELR 197 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc-c--cceEEee
Confidence 9999999999999999999999999999999999999998889999999999864 2 4677764
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=329.86 Aligned_cols=209 Identities=29% Similarity=0.425 Sum_probs=171.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+.. .+.+|+|+||++++||+++|+||||||||||+++|+|+.. +.+|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~----------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 69 (221)
T cd03244 2 DIEFKNVSLRYRPN----------LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE--LSSGSILIDGVDIS 69 (221)
T ss_pred cEEEEEEEEecCCC----------CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhH
Confidence 38999999998532 1359999999999999999999999999999999999875 46899999999875
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHT-------YIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-------~ig~~~~ 196 (820)
. ...++.++|++|++.+++ .||+||+.+... .. .+++.+.++.+++.+..++ .. +..+
T Consensus 70 ~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~ 137 (221)
T cd03244 70 KIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFGE------YS----DEELWQALERVGLKEFVESLPGGLDTVV-EEGG 137 (221)
T ss_pred hCCHHHHhhhEEEECCCCcccc-chHHHHhCcCCC------CC----HHHHHHHHHHhCcHHHHHhccccccccc-ccCC
Confidence 3 234567899999998876 599999864311 12 2345566677776554322 11 1245
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||+++|+++. +. .||++++|++|+
T Consensus 138 ~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~i~~l~~g~ 214 (221)
T cd03244 138 ENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDT-II-DSDRILVLDKGR 214 (221)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-Hh-hCCEEEEEECCe
Confidence 68999999999999999999999999999999999999999999999865 6899999999975 55 499999999999
Q ss_pred EEEEcC
Q 003437 277 LVYMGS 282 (820)
Q Consensus 277 iv~~G~ 282 (820)
+++.|+
T Consensus 215 ~~~~~~ 220 (221)
T cd03244 215 VVEFDS 220 (221)
T ss_pred EEecCC
Confidence 998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=318.77 Aligned_cols=172 Identities=38% Similarity=0.581 Sum_probs=154.3
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+++|+++++||+++|+||||||||||+|+|+|+++ +++|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~------------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (178)
T cd03229 1 LELKNVSKRYGQ------------KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTD 66 (178)
T ss_pred CEEEEEEEEECC------------eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 478999999853 249999999999999999999999999999999999875 468999999998753
Q ss_pred -----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 128 -----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 128 -----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
...++.++|++|++.+++.+|++||+.+. ||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G 104 (178)
T cd03229 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGG 104 (178)
T ss_pred cchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHH
Confidence 13456789999999988889999987531 9999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++.. +..+||++++|++|+
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~g~ 178 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDE-AARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcCEEEEEeCCC
Confidence 999999999999999999999999999999999999999999887 8999999999974 777899999999885
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=353.84 Aligned_cols=216 Identities=22% Similarity=0.319 Sum_probs=181.8
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...++++||++.|.++ ..+.+|+|+||+|++||+++|+|||||||||||++|+|+++ +++|+|.++|.+
T Consensus 19 ~~mL~lknL~~~~~~~---------~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~ 87 (549)
T PRK13545 19 KPFDKLKDLFFRSKDG---------EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSA 87 (549)
T ss_pred cceeEEEEEEEecCCC---------ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEe
Confidence 3458888888877542 12459999999999999999999999999999999999885 468999999975
Q ss_pred CCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 125 VTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 125 ~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
. ++.+...+.+.+||+||+.+..... ..+.++..+++.++++.+||.+..++.++ .||||||
T Consensus 88 ~----------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~~-----~LSGGQr 149 (549)
T PRK13545 88 A----------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPVK-----TYSSGMK 149 (549)
T ss_pred e----------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCcc-----cCCHHHH
Confidence 2 1222345667789999998865432 23445556678899999999887777764 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++|.|||+++|+++. +.++||++++|++|++++.|+++
T Consensus 150 QRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~-i~~l~DrIivL~~GkIv~~G~~~ 228 (549)
T PRK13545 150 SRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQ-VKSFCTKALWLHYGQVKEYGDIK 228 (549)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH-HHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999998789999999999974 78899999999999999999998
Q ss_pred chhhhh
Q 003437 285 ALPAHL 290 (820)
Q Consensus 285 ~~~~~f 290 (820)
++...+
T Consensus 229 el~~~~ 234 (549)
T PRK13545 229 EVVDHY 234 (549)
T ss_pred HHHhhH
Confidence 876543
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=318.47 Aligned_cols=172 Identities=31% Similarity=0.502 Sum_probs=154.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|++++| +|+++|+++++||+++|+||||||||||+++|+|+++ +++|+|.++|+++.
T Consensus 4 ~l~~~~l~~~~----------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (182)
T cd03215 4 VLEVRGLSVKG----------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVT 65 (182)
T ss_pred EEEEeccEEEe----------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECC
Confidence 48999999875 7999999999999999999999999999999999885 46899999999875
Q ss_pred Cc----cccceEEEEccCC---CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 127 TS----YMKMVSSYVMQDD---QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 127 ~~----~~~~~~gyv~Q~~---~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
.. ..++.++|++|++ .+++.+|++||+.+... |
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------L 105 (182)
T cd03215 66 RRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------L 105 (182)
T ss_pred ccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------c
Confidence 42 2356789999984 57888999999876420 9
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|+++ .+.++||++++|++|++
T Consensus 106 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred CHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999999999877999999999987 48889999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=333.61 Aligned_cols=213 Identities=29% Similarity=0.467 Sum_probs=171.3
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+++|++++|+++. .+.+|+++|++|++||+++|+||||||||||+++|+|+++ +++|+|.++|++
T Consensus 9 ~~~l~~~~l~~~~~~~~---------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~ 77 (226)
T cd03248 9 KGIVKFQNVTFAYPTRP---------DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ--PQGGQVLLDGKP 77 (226)
T ss_pred CceEEEEEEEEEeCCCC---------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCCc
Confidence 34599999999996421 1359999999999999999999999999999999999885 468999999987
Q ss_pred CCC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc--CCCccccccccCCCCCCC
Q 003437 125 VTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQL--GLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 125 ~~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~ig~~~~~~L 199 (820)
+.. ...++.++|++|++.+++ .||+||+.++.................++++++.+ |+.+..+..+ +.|
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~-----~~L 151 (226)
T cd03248 78 ISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKG-----SQL 151 (226)
T ss_pred hHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCC-----CcC
Confidence 643 123466899999998886 59999998754211000000011122356788888 7776665554 479
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++. +. .||++++|++|++
T Consensus 152 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~i~~l~~g~i 226 (226)
T cd03248 152 SGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-VE-RADQILVLDGGRI 226 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-HH-hCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999999999875 6899999999985 55 5999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=386.15 Aligned_cols=215 Identities=24% Similarity=0.422 Sum_probs=182.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+|+|+. ++++|+|+|++|++||.+||+||||||||||+|+|+|++. +++|+|++||.++.
T Consensus 473 ~I~~~~vsf~y~~-----------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~i~ 539 (708)
T TIGR01193 473 DIVINDVSYSYGY-----------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFSLK 539 (708)
T ss_pred cEEEEEEEEEcCC-----------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEEHH
Confidence 5999999999952 1359999999999999999999999999999999999985 46899999999875
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~ 196 (820)
. ...++.+|||+|++.+|+. |++|||.++.. ...+. +++.++++..|+ +...|+.+|+. .
T Consensus 540 ~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~----~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~-G 609 (708)
T TIGR01193 540 DIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK----ENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEE-G 609 (708)
T ss_pred HcCHHHHHHheEEEecCceehhH-HHHHHHhccCC----CCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCC-C
Confidence 3 3467889999999999987 99999988631 12233 334455555544 34568888764 4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||++|||||+++|++||||||||+||+.+...+++.|+++ +|+|+|+++|+++. .+.||+|++|++|+
T Consensus 610 ~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~--~~~~D~i~~l~~G~ 685 (708)
T TIGR01193 610 SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSV--AKQSDKIIVLDHGK 685 (708)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHH--HHcCCEEEEEECCE
Confidence 679999999999999999999999999999999999999999999985 47999999999974 46799999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
+++.|+.+++.+
T Consensus 686 i~~~G~~~~L~~ 697 (708)
T TIGR01193 686 IIEQGSHDELLD 697 (708)
T ss_pred EEEECCHHHHHh
Confidence 999999988764
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=313.58 Aligned_cols=233 Identities=30% Similarity=0.382 Sum_probs=202.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++++.++ +.||++||++|++||+.+||||||||||||.++|+|.-....++|+|+++|+++.
T Consensus 3 ~L~I~dLhv~v~~~-----------keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~ 71 (251)
T COG0396 3 MLEIKDLHVEVEGK-----------KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL 71 (251)
T ss_pred eeEEeeeEEEecCc-----------hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccc
Confidence 59999999998642 3699999999999999999999999999999999997655668999999999987
Q ss_pred Cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCh
Q 003437 127 TS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRGVSG 201 (820)
Q Consensus 127 ~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSG 201 (820)
.. ..+.-+...+|.|.=+|..|+.+.|..+.+.+....-...+..+.+++.++.+++.+ .+++.+.. ++||
T Consensus 72 ~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~----GFSG 147 (251)
T COG0396 72 ELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE----GFSG 147 (251)
T ss_pred cCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCC----CcCc
Confidence 53 234556788999999999999999998877643211113456778999999999987 67888874 8999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhc--CEEEEEeCCeEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL--DRIIVLARGRLVY 279 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~--D~v~lL~~G~iv~ 279 (820)
|||||..|+..++.+|++.|||||-||||..+-+.|-+.+.++.++|.+++++||... +..+. |+|.+|.+|+|+.
T Consensus 148 GEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r--ll~~i~pD~vhvl~~GrIv~ 225 (251)
T COG0396 148 GEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR--LLDYIKPDKVHVLYDGRIVK 225 (251)
T ss_pred chHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH--HHhhcCCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999999999999999999975 55665 9999999999999
Q ss_pred EcCccchhhhhhccCCCC
Q 003437 280 MGSPVALPAHLAGFGRTV 297 (820)
Q Consensus 280 ~G~~~~~~~~f~~~g~~~ 297 (820)
.|.+ ++..+++..|+.|
T Consensus 226 sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 226 SGDP-ELAEELEEKGYDW 242 (251)
T ss_pred cCCH-HHHHHHHHhchHH
Confidence 9999 8999998888754
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=367.50 Aligned_cols=210 Identities=23% Similarity=0.295 Sum_probs=179.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||||+|+|+++ +++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~~ 68 (490)
T PRK10938 3 SLQISQGTFRLSD------------TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHIT 68 (490)
T ss_pred eEEEEeEEEEcCC------------eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCcccc
Confidence 4999999999953 249999999999999999999999999999999999885 46899999998764
Q ss_pred Cc---cccceEEEEccCCCC--C-C-----CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 003437 127 TS---YMKMVSSYVMQDDQL--F-P-----MLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~l--~-~-----~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~ 195 (820)
.. ..++.++|++|++.+ + + .+||+|++.+. .+..++++++++.+||++..++.++
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~--- 134 (490)
T PRK10938 69 RLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRFK--- 134 (490)
T ss_pred cCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCcc---
Confidence 21 223558999998642 1 1 46888877532 1234678899999999888777775
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++.. +.++||++++|++|
T Consensus 135 --~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~-~~~~~d~v~~l~~G 211 (490)
T PRK10938 135 --YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDE-IPDFVQFAGVLADC 211 (490)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHH-HHhhCCEEEEEECC
Confidence 699999999999999999999999999999999999999999999998889999999999974 78899999999999
Q ss_pred eEEEEcCccchh
Q 003437 276 RLVYMGSPVALP 287 (820)
Q Consensus 276 ~iv~~G~~~~~~ 287 (820)
+++..|+++++.
T Consensus 212 ~i~~~~~~~~~~ 223 (490)
T PRK10938 212 TLAETGEREEIL 223 (490)
T ss_pred EEEEeCCHHHHh
Confidence 999999877653
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=329.46 Aligned_cols=196 Identities=28% Similarity=0.462 Sum_probs=174.9
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC-------ccccceEEEEccCCCCCCCCC
Q 003437 76 HDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT-------SYMKMVSSYVMQDDQLFPMLT 148 (820)
Q Consensus 76 ~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~-------~~~~~~~gyv~Q~~~l~~~lT 148 (820)
=++++..+.-.++||.|+||||||||+|+|+|+++ |++|.|.+||+.+.+ ...++++||||||..|||++|
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR--PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC--ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 35677776657999999999999999999999986 468999999987643 135678999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 003437 149 VFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSG 228 (820)
Q Consensus 149 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsg 228 (820)
|+.||.|+.... .....+++.+.||++|.++++.. .|||||||||+|+|||++.|++|+||||.+.
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P~-----~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYPG-----TLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCCC-----ccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999986421 34567889999999999988765 6999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhh
Q 003437 229 LDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPA 288 (820)
Q Consensus 229 LD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 288 (820)
||..-+.+++-.|.+|.++ +..|+.+||.+. ++.+++|+|++|++|++..+|+.+++.+
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999999999976 889999999997 5999999999999999999999998864
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=373.92 Aligned_cols=214 Identities=29% Similarity=0.465 Sum_probs=181.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+|+|+.+ +.+|+|+|++++|||.++|+|+||||||||+|+|+|+.+| .+|+|.+||.++.
T Consensus 334 ~I~~~~vsf~y~~~-----------~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p--~~G~I~i~g~~i~ 400 (588)
T PRK13657 334 AVEFDDVSFSYDNS-----------RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP--QSGRILIDGTDIR 400 (588)
T ss_pred eEEEEEEEEEeCCC-----------CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEEhh
Confidence 59999999999631 2499999999999999999999999999999999999854 6899999999886
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~ 196 (820)
. ...++.++||+|++.+|+. |++|||.++. + ..+++ ++.++++.+|+ ++..|+.+|+. .
T Consensus 401 ~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~-~~~d~----~i~~al~~~~l~~~i~~lp~gldt~i~~~-g 469 (588)
T PRK13657 401 TVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGR----P-DATDE----EMRAAAERAQAHDFIERKPDGYDTVVGER-G 469 (588)
T ss_pred hCCHHHHHhheEEEecCcccccc-cHHHHHhcCC----C-CCCHH----HHHHHHHHhCHHHHHHhCcccccchhcCC-C
Confidence 4 2456789999999999986 9999998752 1 22332 34455555554 34567888764 4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||++|||+|+++|++|+||||||+||+.+...+++.|+++. +++|+|++||+++. .+.+|+|++|++|+
T Consensus 470 ~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~--~~~~D~ii~l~~G~ 546 (588)
T PRK13657 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLST--VRNADRILVFDNGR 546 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHH--HHhCCEEEEEECCE
Confidence 5799999999999999999999999999999999999999999999885 47999999999863 56799999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
++..|+.+++.
T Consensus 547 i~~~g~~~~l~ 557 (588)
T PRK13657 547 VVESGSFDELV 557 (588)
T ss_pred EEEeCCHHHHH
Confidence 99999988775
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=314.69 Aligned_cols=170 Identities=33% Similarity=0.561 Sum_probs=151.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|++. ++.+++++|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~~----------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 68 (173)
T cd03246 1 LEVENVSFRYPGA----------EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADISQ 68 (173)
T ss_pred CEEEEEEEEcCCC----------CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEccc
Confidence 4789999998532 1359999999999999999999999999999999999885 468999999998753
Q ss_pred c---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 128 S---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 128 ~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
. ..++.++|++|++.+++. ||+||+ ||||||
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~~-tv~~~l---------------------------------------------LS~G~~ 102 (173)
T cd03246 69 WDPNELGDHVGYLPQDDELFSG-SIAENI---------------------------------------------LSGGQR 102 (173)
T ss_pred CCHHHHHhheEEECCCCccccC-cHHHHC---------------------------------------------cCHHHH
Confidence 2 245678999999988875 999886 999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+++. + ..||++++|++|++
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~-~~~d~v~~l~~G~i 173 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPET-L-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEEECCCC
Confidence 99999999999999999999999999999999999999998789999999999974 5 57999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=364.15 Aligned_cols=216 Identities=24% Similarity=0.392 Sum_probs=182.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++ .+|+|+||+|.+||+++|+||||||||||+|+|+|+++ +++|+|.++|+++
T Consensus 256 ~~l~~~~l~~-----------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i 316 (501)
T PRK10762 256 VRLKVDNLSG-----------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEV 316 (501)
T ss_pred cEEEEeCccc-----------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 3588888873 17999999999999999999999999999999999985 4689999999987
Q ss_pred CCc----cccceEEEEccCC---CCCCCCCHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCC
Q 003437 126 TTS----YMKMVSSYVMQDD---QLFPMLTVFETFMFAAEVRLP---PSISRDEKKKRVYELLDQLGLR-SATHTYIGNE 194 (820)
Q Consensus 126 ~~~----~~~~~~gyv~Q~~---~l~~~lTV~e~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~ 194 (820)
... ..++.+|||+|++ .+++.+||.||+.+....... .....++..++++++++.+||. +..++.++
T Consensus 317 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 394 (501)
T PRK10762 317 VTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG-- 394 (501)
T ss_pred CCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh--
Confidence 532 1345689999996 578889999999875321100 0122334456789999999995 56777765
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++|.|||++|||++. +.++||++++|++
T Consensus 395 ---~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~-~~~~~d~v~~l~~ 470 (501)
T PRK10762 395 ---LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPE-VLGMSDRILVMHE 470 (501)
T ss_pred ---hCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHH-HHhhCCEEEEEEC
Confidence 699999999999999999999999999999999999999999999998889999999999974 8889999999999
Q ss_pred CeEEEEcCccch
Q 003437 275 GRLVYMGSPVAL 286 (820)
Q Consensus 275 G~iv~~G~~~~~ 286 (820)
|+++..|+++++
T Consensus 471 G~i~~~~~~~~~ 482 (501)
T PRK10762 471 GRISGEFTREQA 482 (501)
T ss_pred CEEEEEeccccC
Confidence 999999987765
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=333.60 Aligned_cols=217 Identities=24% Similarity=0.341 Sum_probs=172.3
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+++|++++|++. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++ +.+|+|.++|++
T Consensus 17 ~~~i~~~~l~~~~~~~----------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~ 84 (257)
T cd03288 17 GGEIKIHDLCVRYENN----------LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGID 84 (257)
T ss_pred CceEEEEEEEEEeCCC----------CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEE
Confidence 3459999999999532 1359999999999999999999999999999999999875 468999999998
Q ss_pred CCCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCC
Q 003437 125 VTTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT-------HTYIGNE 194 (820)
Q Consensus 125 ~~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~ig~~ 194 (820)
+... ..++.++|++|++.+++. |++||+.... .... +.+.++++.+++.+.. ++.++ .
T Consensus 85 i~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~------~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~-~ 152 (257)
T cd03288 85 ISKLPLHTLRSRLSIILQDPILFSG-SIRFNLDPEC------KCTD----DRLWEALEIAQLKNMVKSLPGGLDAVVT-E 152 (257)
T ss_pred hhhCCHHHHhhhEEEECCCCccccc-HHHHhcCcCC------CCCH----HHHHHHHHHhCcHHHHhhcccccCcEec-c
Confidence 7532 345678999999988875 9999985321 0111 1223333333333221 12221 2
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
.+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++. ++.|||+++|+++. +.. ||++++|++
T Consensus 153 ~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~~-~dri~~l~~ 229 (257)
T cd03288 153 GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-ILD-ADLVLVLSR 229 (257)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HHh-CCEEEEEEC
Confidence 345799999999999999999999999999999999999999999999975 48999999999985 554 999999999
Q ss_pred CeEEEEcCccchhh
Q 003437 275 GRLVYMGSPVALPA 288 (820)
Q Consensus 275 G~iv~~G~~~~~~~ 288 (820)
|+++..|+++++..
T Consensus 230 G~i~~~g~~~~~~~ 243 (257)
T cd03288 230 GILVECDTPENLLA 243 (257)
T ss_pred CEEEEeCCHHHHHh
Confidence 99999998877643
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=320.58 Aligned_cols=193 Identities=24% Similarity=0.356 Sum_probs=166.1
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|.+ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +++|+|+++|+++..
T Consensus 2 l~~~~l~~~~~~------------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~ 67 (200)
T PRK13540 2 LDVIELDFDYHD------------QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIKK 67 (200)
T ss_pred EEEEEEEEEeCC------------eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCcccc
Confidence 789999999853 249999999999999999999999999999999999885 468999999998753
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 --SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 --~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
...++.++|++|+..+++.+||+||+.+..... .. ..++.++++.+++.+..++.++ .|||||||
T Consensus 68 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~ 134 (200)
T PRK13540 68 DLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYPCG-----LLSSGQKR 134 (200)
T ss_pred CHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCChh-----hcCHHHHH
Confidence 234567899999998888899999998864211 11 2468899999999877676654 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEE
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRI 269 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 269 (820)
|++||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++.. + ..+|..
T Consensus 135 rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-~-~~~d~~ 196 (200)
T PRK13540 135 QVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP-L-NKADYE 196 (200)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh-c-cccchh
Confidence 9999999999999999999999999999999999999998789999999999874 3 447754
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=378.87 Aligned_cols=222 Identities=30% Similarity=0.454 Sum_probs=191.1
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+|.|+.+ +..+||+|+|+++++|+.+||+|||||||||.+-+|-..+. +++|.|.+||+++
T Consensus 986 G~I~~~~V~F~YPsR---------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~G~V~IDg~di 1054 (1228)
T KOG0055|consen 986 GDIEFRNVSFAYPTR---------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDAGKVKIDGVDI 1054 (1228)
T ss_pred eEEEEeeeEeeCCCC---------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCccc
Confidence 359999999999864 35679999999999999999999999999999999999874 5789999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-H-H-HcCCCccccccccCCCCCCC
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYEL-L-D-QLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~-l-~-~lgL~~~~~~~ig~~~~~~L 199 (820)
... ..|+++|.|.|+|.||.. |++|||.|+.. ..+.+|..+.++.. + + ..+|++..||.+|+++. +|
T Consensus 1055 k~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~~-----~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~-QL 1127 (1228)
T KOG0055|consen 1055 KDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGSE-----EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGV-QL 1127 (1228)
T ss_pred ccCCHHHHHHhcceeccCchhhcc-cHHHHHhccCC-----CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccC-cC
Confidence 753 468889999999999987 99999999821 24554443322211 1 1 13788999999997664 79
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
|||||||+||||||++||+||||||.||+||+++.+.|.+.|.+.. .|+|+|++.|.++. + +-||.|.|+++|+|++
T Consensus 1128 SGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST-I-qnaD~I~Vi~~G~VvE 1204 (1228)
T KOG0055|consen 1128 SGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST-I-QNADVIAVLKNGKVVE 1204 (1228)
T ss_pred CchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh-h-hcCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999999975 58999999999985 5 4699999999999999
Q ss_pred EcCccchhh
Q 003437 280 MGSPVALPA 288 (820)
Q Consensus 280 ~G~~~~~~~ 288 (820)
.|+.++++.
T Consensus 1205 ~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1205 QGTHDELLA 1213 (1228)
T ss_pred cccHHHHHh
Confidence 999999876
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=369.71 Aligned_cols=219 Identities=32% Similarity=0.462 Sum_probs=180.4
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..++++|++++|+.. ++.+|+|+|+++++||.++|+||||||||||+|+|+|+++ +.+|+|.+||.++
T Consensus 315 ~~i~~~~v~~~y~~~----------~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~i 382 (544)
T TIGR01842 315 GHLSVENVTIVPPGG----------KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADL 382 (544)
T ss_pred CeEEEEEEEEEcCCC----------CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeh
Confidence 359999999999632 2358999999999999999999999999999999999885 4689999999987
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCCCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKK-----RVYELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
.. ...++.++||+|++.+|+. |++||+.+... ..++++..+ ..++.++.+ ++..|+.+|+ ...
T Consensus 383 ~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~-~g~ 453 (544)
T TIGR01842 383 KQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGE-----NADPEKIIEAAKLAGVHELILRL--PDGYDTVIGP-GGA 453 (544)
T ss_pred hhCCHHHHhhheEEecCCcccccc-cHHHHHhccCC-----CCCHHHHHHHHHHhChHHHHHhC--ccccccccCC-CcC
Confidence 64 2356789999999999987 99999985421 123332221 122333333 3345677765 346
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.||||||||++|||||+++|++|||||||+|||+.++..+.+.|+++..+|+|+|+++|+++. .+.||++++|++|++
T Consensus 454 ~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~--~~~~d~i~~l~~G~i 531 (544)
T TIGR01842 454 TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSL--LGCVDKILVLQDGRI 531 (544)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEECCEE
Confidence 799999999999999999999999999999999999999999999997678999999999973 467999999999999
Q ss_pred EEEcCccchh
Q 003437 278 VYMGSPVALP 287 (820)
Q Consensus 278 v~~G~~~~~~ 287 (820)
++.|+.+++.
T Consensus 532 ~~~g~~~~l~ 541 (544)
T TIGR01842 532 ARFGERDEVL 541 (544)
T ss_pred EeeCCHHHHh
Confidence 9999987764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=317.84 Aligned_cols=177 Identities=32% Similarity=0.500 Sum_probs=152.9
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-----cccceEEEEccCCC--CC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS-----YMKMVSSYVMQDDQ--LF 144 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~-----~~~~~~gyv~Q~~~--l~ 144 (820)
+.+|+++|++|++||+++|+||||||||||+++|+|+.+ +++|+|.++|+++... ..++.++|++|++. ++
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 459999999999999999999999999999999999885 4689999999987421 23456899999973 45
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 003437 145 PMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224 (820)
Q Consensus 145 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDE 224 (820)
..||+||+.+..... ..+.++..++++++++.+||.+..++.+. .|||||||||+|||+|+.+|++|||||
T Consensus 83 -~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 83 -AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPTH-----CLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred -cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 469999999875432 23445556678999999999887777664 699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCcc
Q 003437 225 PTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259 (820)
Q Consensus 225 PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 259 (820)
||+|||+.++..+.++|++++++|+|||++||+++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999888999999999985
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=372.01 Aligned_cols=216 Identities=27% Similarity=0.394 Sum_probs=183.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+.. ++.+|+|+|+++++||.++|+|+||||||||+|+|+|+.. +.+|+|++||.+++
T Consensus 330 ~i~~~~v~f~y~~~----------~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--~~~G~I~i~g~~i~ 397 (571)
T TIGR02203 330 DVEFRNVTFRYPGR----------DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE--PDSGQILLDGHDLA 397 (571)
T ss_pred eEEEEEEEEEcCCC----------CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEeHH
Confidence 59999999999542 2359999999999999999999999999999999999985 46799999999876
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~ 196 (820)
. ...++.++||+|++.+|+. |++|||.++.. ...+ ++++.++++.+|+. +..|+.+|+. .
T Consensus 398 ~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g 467 (571)
T TIGR02203 398 DYTLASLRRQVALVSQDVVLFND-TIANNIAYGRT----EQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGEN-G 467 (571)
T ss_pred hcCHHHHHhhceEEccCcccccc-cHHHHHhcCCC----CCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCC-C
Confidence 4 3456779999999999987 99999987621 1122 34466667766654 3467888865 3
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
+.||||||||++|||+++++|++|+||||||+||..+...+++.|+++. +++|+|++||+++ ....||+|++|++|+
T Consensus 468 ~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g~ 544 (571)
T TIGR02203 468 VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDDGR 544 (571)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeCCE
Confidence 5799999999999999999999999999999999999999999999885 4799999999986 457799999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
++..|+.+++.
T Consensus 545 i~~~g~~~~l~ 555 (571)
T TIGR02203 545 IVERGTHNELL 555 (571)
T ss_pred EEeeCCHHHHH
Confidence 99999988875
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=314.87 Aligned_cols=176 Identities=30% Similarity=0.546 Sum_probs=154.1
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|..+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++..
T Consensus 1 i~~~~~~~~~~~~----------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 68 (178)
T cd03247 1 LSINNVSFSYPEQ----------EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK--PQQGEITLDGVPVSD 68 (178)
T ss_pred CEEEEEEEEeCCC----------CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCEEHHH
Confidence 5789999998542 1249999999999999999999999999999999999875 468999999997643
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 --SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 --~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
...++.++|++|++.+++ .||+||+ +..|||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~q 105 (178)
T cd03247 69 LEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQ 105 (178)
T ss_pred HHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHH
Confidence 224567899999998886 5998886 1369999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|++|||+|+.+|++|||||||+|||+.++..+++.|+++. ++.|||+++|++.. +. .||++++|++|++++.|
T Consensus 106 rv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~~-~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 106 RLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG-IE-HMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-HH-hCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999996 58999999999985 54 69999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=344.10 Aligned_cols=226 Identities=30% Similarity=0.432 Sum_probs=193.0
Q ss_pred cCCCCCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEE
Q 003437 40 LKMIPGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVR 119 (820)
Q Consensus 40 ~~~~~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~ 119 (820)
+...++..++++||+|.|.. ++++|+||||++.||+.+||+||||+||||++|+|-.+.. ..+|.|.
T Consensus 530 pl~~~~G~i~fsnvtF~Y~p-----------~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd--v~sGsI~ 596 (790)
T KOG0056|consen 530 PLKVTQGKIEFSNVTFAYDP-----------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD--VNSGSIT 596 (790)
T ss_pred CccccCCeEEEEEeEEecCC-----------CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh--ccCceEE
Confidence 34456677999999999964 3579999999999999999999999999999999999874 4689999
Q ss_pred ECCEeCCC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH--HH-HHcCCCccccccccC
Q 003437 120 IDGKPVTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYE--LL-DQLGLRSATHTYIGN 193 (820)
Q Consensus 120 i~G~~~~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~--~l-~~lgL~~~~~~~ig~ 193 (820)
+||+++.. ...|+.+|.||||..+|.+ |+..|+.|+.. +.+.++..+.++. += +.+++.+..++.+|+
T Consensus 597 iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~-----~AsneevyaAAkAA~IHdrIl~fPegY~t~VGE 670 (790)
T KOG0056|consen 597 IDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAKP-----SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGE 670 (790)
T ss_pred EcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecCC-----CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhh
Confidence 99999863 3567889999999999987 99999998732 2344444332222 21 357889999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 194 ~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
++.+ |||||||||+|||+++.+|.+++|||.||+||..+.+.|...|.++++ ++|.|++.|..+. +. -+|.|++++
T Consensus 671 RGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST-iv-nAD~ILvi~ 746 (790)
T KOG0056|consen 671 RGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST-IV-NADLILVIS 746 (790)
T ss_pred cccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh-ee-cccEEEEEe
Confidence 8775 999999999999999999999999999999999999999999999986 7889999999986 43 489999999
Q ss_pred CCeEEEEcCccchhh
Q 003437 274 RGRLVYMGSPVALPA 288 (820)
Q Consensus 274 ~G~iv~~G~~~~~~~ 288 (820)
+|+|++.|..+|++.
T Consensus 747 ~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 747 NGRIVERGRHEELLK 761 (790)
T ss_pred CCeEeecCcHHHHHh
Confidence 999999999988864
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=319.56 Aligned_cols=199 Identities=27% Similarity=0.398 Sum_probs=164.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|++++|+.. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++.
T Consensus 6 ~l~~~~l~~~~~~~----------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 73 (207)
T cd03369 6 EIEVENLSVRYAPD----------LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--AEEGKIEIDGIDIS 73 (207)
T ss_pred eEEEEEEEEEeCCC----------CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEhH
Confidence 59999999998531 1359999999999999999999999999999999999875 46899999999874
Q ss_pred Cc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 127 TS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
.. ..++.++|++|++.+++. ||+||+.+.. .... +.+.+.++ + +. .+..|||||
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~------~~~~----~~~~~~l~---~----~~-----~~~~LS~G~ 130 (207)
T cd03369 74 TIPLEDLRSSLTIIPQDPTLFSG-TIRSNLDPFD------EYSD----EEIYGALR---V----SE-----GGLNLSQGQ 130 (207)
T ss_pred HCCHHHHHhhEEEEecCCcccCc-cHHHHhcccC------CCCH----HHHHHHhh---c----cC-----CCCcCCHHH
Confidence 31 235679999999988875 9999996531 1122 22333333 2 22 235799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
+||++|||+|+.+|++|||||||+|||+.++..+.+.|+++. +|.|+|++||+++. +.. ||++++|++|+++..|++
T Consensus 131 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 131 RQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRT-IID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hhh-CCEEEEEECCEEEecCCC
Confidence 999999999999999999999999999999999999999985 48999999999985 554 999999999999988764
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=341.04 Aligned_cols=216 Identities=30% Similarity=0.442 Sum_probs=194.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|++|.|++ ..+++|||+++++||+.||+|.||||||||+|+|.|.+. |++|+|.++|+++.
T Consensus 4 ~l~~~~itK~f~~------------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~~v~ 69 (501)
T COG3845 4 ALEMRGITKRFPG------------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGKEVR 69 (501)
T ss_pred eEEEeccEEEcCC------------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCEEec
Confidence 5999999999973 358999999999999999999999999999999999885 57899999999985
Q ss_pred Cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 127 TS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
-. ..+..||+|.|+..|+|++||.||+.++..-......+.++.+++++++.+.+||+=..|.+++ +||-|
T Consensus 70 ~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsVG 144 (501)
T COG3845 70 IKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSVG 144 (501)
T ss_pred cCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCcc
Confidence 32 2456689999999999999999999998754322345677888999999999999988888887 49999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|||||.|-++|..+|++|||||||+-|-|....++++.|+.++++|+|||++||... ++.++|||+.+|.+|+++..-+
T Consensus 145 ~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 145 EQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred hhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999999999999999999999999999999999999999999999998 5899999999999999876555
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=362.72 Aligned_cols=216 Identities=23% Similarity=0.353 Sum_probs=182.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.++++|+++. .+++|+|++|++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++.
T Consensus 257 ~l~~~~~~~~----------------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~ 318 (501)
T PRK11288 257 RLRLDGLKGP----------------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPID 318 (501)
T ss_pred EEEEeccccC----------------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECC
Confidence 5888888731 38999999999999999999999999999999999885 46899999999875
Q ss_pred Cc----cccceEEEEccCC---CCCCCCCHHHHHHHHHHhcC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 003437 127 TS----YMKMVSSYVMQDD---QLFPMLTVFETFMFAAEVRL-PPS--ISRDEKKKRVYELLDQLGLR-SATHTYIGNEG 195 (820)
Q Consensus 127 ~~----~~~~~~gyv~Q~~---~l~~~lTV~e~l~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~ 195 (820)
.. ..++.++|++|++ .+++.+||.||+.+...... ... ....+.+++++++++.+||. +..++.++
T Consensus 319 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 395 (501)
T PRK11288 319 IRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM--- 395 (501)
T ss_pred CCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc---
Confidence 31 2245689999986 48888999999987542110 001 12333346788999999994 67777776
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++.+++++|++++++|.|||++|||++. +.++||++++|++|
T Consensus 396 --~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~-~~~~~d~i~~l~~g 472 (501)
T PRK11288 396 --NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPE-VLGVADRIVVMREG 472 (501)
T ss_pred --cCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHH-HHhhCCEEEEEECC
Confidence 699999999999999999999999999999999999999999999999889999999999985 88899999999999
Q ss_pred eEEEEcCccch
Q 003437 276 RLVYMGSPVAL 286 (820)
Q Consensus 276 ~iv~~G~~~~~ 286 (820)
++++.|+++++
T Consensus 473 ~i~~~~~~~~~ 483 (501)
T PRK11288 473 RIAGELAREQA 483 (501)
T ss_pred EEEEEEccccC
Confidence 99999988654
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=377.58 Aligned_cols=217 Identities=27% Similarity=0.475 Sum_probs=182.7
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+|+|+.. ++.+|+|+|+++++||.++|+|+||||||||+|+|+|++. +.+|+|++||.++
T Consensus 454 ~~i~~~~vsf~y~~~----------~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~~i 521 (694)
T TIGR01846 454 GAITFENIRFRYAPD----------SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGVDL 521 (694)
T ss_pred CeEEEEEEEEEcCCC----------CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEeh
Confidence 359999999999632 2359999999999999999999999999999999999985 4689999999998
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEG 195 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~ 195 (820)
.. ...++.++||+|++.+|+. |++|||.++. + ..+. +.+.++++..++ ++..|+.+++.
T Consensus 522 ~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~----~-~~~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~- 590 (694)
T TIGR01846 522 AIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCN----P-GAPF----EHVIHAAKLAGAHDFISELPQGYNTEVGEK- 590 (694)
T ss_pred hhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCC----C-CCCH----HHHHHHHHHcChHHHHHhCcCccCcEecCC-
Confidence 64 3457789999999999986 9999998742 1 2233 234444555444 33467888764
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
...||||||||++|||||+++|++|||||||++||+.+...+.+.|+++. +++|+|++||+++. + ..||++++|++|
T Consensus 591 g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~-~-~~~d~ii~l~~G 667 (694)
T TIGR01846 591 GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST-V-RACDRIIVLEKG 667 (694)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH-H-HhCCEEEEEeCC
Confidence 46899999999999999999999999999999999999999999999985 58999999999974 4 469999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+.+++.+
T Consensus 668 ~i~~~g~~~~l~~ 680 (694)
T TIGR01846 668 QIAESGRHEELLA 680 (694)
T ss_pred EEEEeCCHHHHHH
Confidence 9999999888754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=323.64 Aligned_cols=197 Identities=30% Similarity=0.465 Sum_probs=165.1
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCC--CCCCHHHHHHHHH
Q 003437 80 GQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLF--PMLTVFETFMFAA 157 (820)
Q Consensus 80 ~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~--~~lTV~e~l~~~~ 157 (820)
|++++||+++|+||||||||||+++|+|+.+ +++|+|.++|+++.. .++.++|++|++.++ ..+||.||+.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 4688999999999999999999999999875 468999999987642 346789999998763 3479999998753
Q ss_pred HhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 003437 158 EVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYS 236 (820)
Q Consensus 158 ~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~ 236 (820)
..... ......+..+++.++++.+|+++..++.++ +|||||||||+||++|+.+|++|||||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 001122344578899999999887777665 699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchh
Q 003437 237 VVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 237 i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
+.+.|++++++|+|+|++||+++. +.++||++++| +|++++.|+++++.
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~~-~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLAQ-AMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 999999998789999999999974 78899999999 89999999887653
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=360.93 Aligned_cols=216 Identities=21% Similarity=0.303 Sum_probs=180.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|+++ .+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|+++.
T Consensus 268 ~l~~~~l~~-----------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 328 (510)
T PRK15439 268 VLTVEDLTG-----------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEIN 328 (510)
T ss_pred eEEEeCCCC-----------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECC
Confidence 588888872 16999999999999999999999999999999999885 45799999999875
Q ss_pred Ccc----ccceEEEEccCC---CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCC
Q 003437 127 TSY----MKMVSSYVMQDD---QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRRG 198 (820)
Q Consensus 127 ~~~----~~~~~gyv~Q~~---~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~ 198 (820)
... .++.++|++|++ .+++.+||.||+.................+++++++++.+||+ +..++.++ .
T Consensus 329 ~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~ 403 (510)
T PRK15439 329 ALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAAR-----T 403 (510)
T ss_pred CCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccc-----c
Confidence 321 235689999984 4888899999986432111010011223346788999999997 67777765 6
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++|.|||++|||++. +.++||++++|++|+++
T Consensus 404 LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~-i~~~~d~i~~l~~G~i~ 482 (510)
T PRK15439 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEE-IEQMADRVLVMHQGEIS 482 (510)
T ss_pred CCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHH-HHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999998889999999999985 88899999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
..|+++++.
T Consensus 483 ~~~~~~~~~ 491 (510)
T PRK15439 483 GALTGAAIN 491 (510)
T ss_pred EEEccccCC
Confidence 999886653
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=314.27 Aligned_cols=176 Identities=38% Similarity=0.585 Sum_probs=151.7
Q ss_pred EEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc
Q 003437 49 EFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS 128 (820)
Q Consensus 49 ~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~ 128 (820)
+++||+++|++ +.+|+++|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|+++...
T Consensus 1 ~~~~l~~~~~~------------~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~--~~~G~v~~~g~~~~~~ 66 (180)
T cd03214 1 EVENLSVGYGG------------RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK--PSSGEILLDGKDLASL 66 (180)
T ss_pred CeeEEEEEECC------------eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCcC
Confidence 47899999853 249999999999999999999999999999999999875 4689999999987531
Q ss_pred ---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 129 ---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 129 ---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
..++.++|++| +++.+||.+..++.+ +.|||||||
T Consensus 67 ~~~~~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~~-----~~LS~G~~q 104 (180)
T cd03214 67 SPKELARKIAYVPQ-------------------------------------ALELLGLAHLADRPF-----NELSGGERQ 104 (180)
T ss_pred CHHHHHHHHhHHHH-------------------------------------HHHHcCCHhHhcCCc-----ccCCHHHHH
Confidence 12344677776 566777776655554 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|++|||+|+.+|+++||||||+|||+.++..+.+.|++++++ |.|+|+++|+++. +.++||++++|++|++++.|
T Consensus 105 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~-~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 105 RVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL-AARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999876 8999999999984 77899999999999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=400.09 Aligned_cols=220 Identities=25% Similarity=0.438 Sum_probs=185.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--------------
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-------------- 112 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-------------- 112 (820)
.|+++||+|+|+.+. ++++|+|+||+|++|+.+||+||||||||||+++|.|++.|.
T Consensus 1165 ~I~f~nVsF~Y~~~~---------~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~ 1235 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRP---------NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTND 1235 (1466)
T ss_pred eEEEEEEEEECCCCC---------CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccc
Confidence 599999999997421 245999999999999999999999999999999999998752
Q ss_pred --------------------------------------CCceEEEECCEeCCC---ccccceEEEEccCCCCCCCCCHHH
Q 003437 113 --------------------------------------SLEGSVRIDGKPVTT---SYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 113 --------------------------------------~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
+.+|+|++||.++.. ..+|+.++||+|++.||+. |++|
T Consensus 1236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIre 1314 (1466)
T PTZ00265 1236 MTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYE 1314 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHH
Confidence 258999999999864 3467889999999999975 9999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQL-------GLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDE 224 (820)
||.++.. ..+.++ ++++++.. .|++..||.+|+.+ ..||||||||++|||||+++|+||||||
T Consensus 1315 NI~~g~~-----~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILLLDE 1384 (1466)
T PTZ00265 1315 NIKFGKE-----DATRED----VKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILLLDE 1384 (1466)
T ss_pred HHhcCCC-----CCCHHH----HHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9998731 234433 44444443 35667899999644 5699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCccHHHHhhcCEEEEEeC----CeEE-EEcCccchhh
Q 003437 225 PTSGLDSTSAYSVVEKVKDIA-RTGSIVLMTIHQPSYRIQMLLDRIIVLAR----GRLV-YMGSPVALPA 288 (820)
Q Consensus 225 PtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~----G~iv-~~G~~~~~~~ 288 (820)
|||+||+.+...|.+.|+++. .+++|+|+++|+++. + +.||+|++|++ |+++ +.|+.++++.
T Consensus 1385 aTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlst-i-~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1385 ATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIAS-I-KRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred cccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHH-H-HhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999999999999999999986 368999999999974 4 56999999999 9955 8999988863
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=367.46 Aligned_cols=217 Identities=27% Similarity=0.450 Sum_probs=182.2
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|+... ++.+|+|+|++++|||.++|+|+||||||||+|+|+|+++ +.+|+|.+||.++
T Consensus 336 ~~i~~~~v~f~y~~~~---------~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~--p~~G~I~i~g~~i 404 (576)
T TIGR02204 336 GEIEFEQVNFAYPARP---------DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD--PQSGRILLDGVDL 404 (576)
T ss_pred ceEEEEEEEEECCCCC---------CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEH
Confidence 3599999999996421 2459999999999999999999999999999999999985 4579999999988
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEG 195 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~ 195 (820)
+. ...++.++|+||++.+|+. |++|||.++.. ..+ .+++.++++.+|+. +..|+.+|+.
T Consensus 405 ~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~-----~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~- 473 (576)
T TIGR02204 405 RQLDPAELRARMALVPQDPVLFAA-SVMENIRYGRP-----DAT----DEEVEAAARAAHAHEFISALPEGYDTYLGER- 473 (576)
T ss_pred HhcCHHHHHHhceEEccCCccccc-cHHHHHhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCCC-
Confidence 64 2356779999999999986 99999987521 122 23455666666654 3456777654
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
...||||||||++|||+++++|++|+||||||+||+.++..+++.|+++. +++|+|++||+++. ...+|++++|++|
T Consensus 474 g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~--~~~~d~vi~l~~g 550 (576)
T TIGR02204 474 GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLAT--VLKADRIVVMDQG 550 (576)
T ss_pred CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHH--HHhCCEEEEEECC
Confidence 45799999999999999999999999999999999999999999999985 48999999999864 4679999999999
Q ss_pred eEEEEcCccchh
Q 003437 276 RLVYMGSPVALP 287 (820)
Q Consensus 276 ~iv~~G~~~~~~ 287 (820)
+++..|+++++.
T Consensus 551 ~~~~~g~~~~l~ 562 (576)
T TIGR02204 551 RIVAQGTHAELI 562 (576)
T ss_pred EEEeeecHHHHH
Confidence 999999987764
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=328.15 Aligned_cols=232 Identities=26% Similarity=0.413 Sum_probs=201.6
Q ss_pred CCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCceEEEE
Q 003437 44 PGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG---SLEGSVRI 120 (820)
Q Consensus 44 ~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~---~~~G~I~i 120 (820)
+...|+++||++.|.... +...++++|||.+++||.+||+|+||||||-..+.|.|+++.. ..+|+|.|
T Consensus 3 ~~~lL~v~nLsV~f~~~~--------~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f 74 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEG--------GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILF 74 (534)
T ss_pred CCcceeeeccEEEEecCC--------cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEE
Confidence 345699999999996432 3456999999999999999999999999999999999998542 25799999
Q ss_pred CCEeCCCc---cc----cceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 003437 121 DGKPVTTS---YM----KMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYI 191 (820)
Q Consensus 121 ~G~~~~~~---~~----~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~i 191 (820)
+|+++-.. .. -..|+++||++ .|.|-.|+...+.-..+++ .++++++.++++.++|+.+|+.+-...+
T Consensus 75 ~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl- 151 (534)
T COG4172 75 DGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRL- 151 (534)
T ss_pred cChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhh-
Confidence 99997431 11 23589999998 4888889999998887765 3578888999999999999998765544
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEE
Q 003437 192 GNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRII 270 (820)
Q Consensus 192 g~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~ 270 (820)
+.+|.+|||||||||.||+||+.+|++||.||||++||...+.+|+++|++|.++ |..++++|||..- +.+++|||+
T Consensus 152 -~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i-Vr~~ADrV~ 229 (534)
T COG4172 152 -DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI-VRKFADRVY 229 (534)
T ss_pred -hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH-HHHhhhhEE
Confidence 5788999999999999999999999999999999999999999999999999764 9999999999984 889999999
Q ss_pred EEeCCeEEEEcCccchhh
Q 003437 271 VLARGRLVYMGSPVALPA 288 (820)
Q Consensus 271 lL~~G~iv~~G~~~~~~~ 288 (820)
+|.+|++++.|+.+++..
T Consensus 230 VM~~G~ivE~~~t~~lF~ 247 (534)
T COG4172 230 VMQHGEIVETGTTETLFA 247 (534)
T ss_pred EEeccEEeecCcHHHHhh
Confidence 999999999999887753
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=365.11 Aligned_cols=216 Identities=21% Similarity=0.363 Sum_probs=181.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|++++|+.. ++.+|+|+|+++++||.++|+||||||||||+++|+|+++ +.+|+|.+||+++.
T Consensus 313 ~I~~~~v~~~y~~~----------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~--p~~G~i~~~g~~~~ 380 (569)
T PRK10789 313 ELDVNIRQFTYPQT----------DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD--VSEGDIRFHDIPLT 380 (569)
T ss_pred cEEEEEEEEECCCC----------CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEHh
Confidence 59999999999632 2359999999999999999999999999999999999885 46899999999875
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~ 196 (820)
. ..+++.++||+|++.+|+. |++||+.++.. ..+.+ .+.++++..++ ++..|+.+|+. .
T Consensus 381 ~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~~-g 449 (569)
T PRK10789 381 KLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRP-----DATQQ----EIEHVARLASVHDDILRLPQGYDTEVGER-G 449 (569)
T ss_pred hCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCC-----CCCHH----HHHHHHHHcCCHHHHHhCcCcccceecCC-C
Confidence 4 2456789999999999986 99999987521 12332 34444555444 44567888754 4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||++|||+|+++|++|||||||++||+.+...+.+.|+++. +|+|+|+++|+++. ...||++++|++|+
T Consensus 450 ~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~--~~~~d~i~~l~~G~ 526 (569)
T PRK10789 450 VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA--LTEASEILVMQHGH 526 (569)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH--HHcCCEEEEEeCCE
Confidence 5799999999999999999999999999999999999999999999985 58999999999964 35699999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
++..|+.+++.+
T Consensus 527 i~~~g~~~~l~~ 538 (569)
T PRK10789 527 IAQRGNHDQLAQ 538 (569)
T ss_pred EEEecCHHHHHH
Confidence 999999887753
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=338.39 Aligned_cols=188 Identities=32% Similarity=0.507 Sum_probs=165.7
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHH
Q 003437 90 IMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRD 168 (820)
Q Consensus 90 llGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~ 168 (820)
|+||||||||||||+|+|+.+ +++|+|.++|+++... ..++.++|++|++.+++.+||+||+.|+...+ ..+++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 689999999999999999985 4689999999988542 23567899999999999999999999986543 23445
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 003437 169 EKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART- 247 (820)
Q Consensus 169 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~- 247 (820)
+..++++++++.+||.+..++.+. +|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPH-----QLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 556789999999999987777764 69999999999999999999999999999999999999999999999865
Q ss_pred CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhh
Q 003437 248 GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPA 288 (820)
Q Consensus 248 g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 288 (820)
|+|||++||+++ ++..+||++++|++|+++..|+++++..
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999997 4788999999999999999999988753
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=316.07 Aligned_cols=196 Identities=28% Similarity=0.495 Sum_probs=155.1
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|..+.. ..+.+|+++|++|++||+++|+||||||||||+++|+|+.+ +++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~-------~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~--~~~G~i~~~g----- 66 (204)
T cd03250 1 ISVEDASFTWDSGEQ-------ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE--KLSGSVSVPG----- 66 (204)
T ss_pred CEEeEEEEecCCCCc-------cccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCCeEEEcC-----
Confidence 578999999854200 00259999999999999999999999999999999999875 4689999998
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCCCCCCC
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT-------HTYIGNEGRRGVS 200 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~ig~~~~~~LS 200 (820)
.++|++|++.+++ .||+||+.+... ...+ ++.+.++.+++.+.. ++.+. ..+..||
T Consensus 67 -----~i~~~~q~~~l~~-~t~~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS 129 (204)
T cd03250 67 -----SIAYVSQEPWIQN-GTIRENILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEIG-EKGINLS 129 (204)
T ss_pred -----EEEEEecCchhcc-CcHHHHhccCCC------cCHH----HHHHHHHHcCcHHHHHhccCcccceec-CCCCcCC
Confidence 5899999998885 599999987532 1111 222333333332211 22222 2356799
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVE-KVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
||||||++|||+|+.+|+++||||||+|||+.++..+.+ +++++.++|.|||+++|++.. +.. +|++++|++|+
T Consensus 130 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~-~~~-~d~i~~l~~G~ 204 (204)
T cd03250 130 GGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL-LPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHH-Hhh-CCEEEEEeCCC
Confidence 999999999999999999999999999999999999998 567776678999999999874 555 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=362.01 Aligned_cols=215 Identities=28% Similarity=0.450 Sum_probs=178.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++. +.+|+|+|+++++||.++|+||||||||||+++|+|+.+ +.+|+|.+||.++.
T Consensus 334 ~i~~~~v~~~y~~~-----------~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~~ 400 (585)
T TIGR01192 334 AVEFRHITFEFANS-----------SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD--PTVGQILIDGIDIN 400 (585)
T ss_pred eEEEEEEEEECCCC-----------CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC--CCCCEEEECCEEhh
Confidence 59999999999632 248999999999999999999999999999999999885 46899999999875
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLG-------LRSATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~ig~~~~ 196 (820)
. ...++.++||+|++.+++. |++||+.++.. ..+.++. .+.++..+ +.+..|+.+|+. .
T Consensus 401 ~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~~----~~a~~~~~~~~~i~~l~~g~~t~~~~~-~ 469 (585)
T TIGR01192 401 TVTRESLRKSIATVFQDAGLFNR-SIRENIRLGRE-----GATDEEV----YEAAKAAAAHDFILKRSNGYDTLVGER-G 469 (585)
T ss_pred hCCHHHHHhheEEEccCCccCcc-cHHHHHhcCCC-----CCCHHHH----HHHHHHhCcHHHHHhccccccchhcCC-C
Confidence 4 2456789999999999875 99999987521 1233332 23333333 333456667653 4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||++|||+|+.+|++|||||||++||+.++..+.+.|+++. +++|+|+++|+++. + ..||++++|++|+
T Consensus 470 ~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~-~-~~~d~i~~l~~G~ 546 (585)
T TIGR01192 470 NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST-V-RNADLVLFLDQGR 546 (585)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH-H-HcCCEEEEEECCE
Confidence 6799999999999999999999999999999999999999999999884 48999999999974 4 5699999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
+++.|+.+++.+
T Consensus 547 i~~~g~~~~l~~ 558 (585)
T TIGR01192 547 LIEKGSFQELIQ 558 (585)
T ss_pred EEEECCHHHHHH
Confidence 999999877654
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=301.15 Aligned_cols=158 Identities=30% Similarity=0.458 Sum_probs=142.6
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +++|+++|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~ 66 (163)
T cd03216 1 LELRGITKRFGG------------VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSF 66 (163)
T ss_pred CEEEEEEEEECC------------eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCc
Confidence 578999999953 249999999999999999999999999999999999885 468999999998754
Q ss_pred c----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 128 S----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 128 ~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
. ..++.++|++| |||||
T Consensus 67 ~~~~~~~~~~i~~~~q-----------------------------------------------------------LS~G~ 87 (163)
T cd03216 67 ASPRDARRAGIAMVYQ-----------------------------------------------------------LSVGE 87 (163)
T ss_pred CCHHHHHhcCeEEEEe-----------------------------------------------------------cCHHH
Confidence 2 13456788887 99999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++.. +.++||++++|++|++++
T Consensus 88 ~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 88 RQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE-VFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999998779999999999874 778899999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=338.91 Aligned_cols=224 Identities=30% Similarity=0.449 Sum_probs=190.8
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|.+++|++--++ .++++|+|+||.+.+||.++|+||||||||||.|+|.|..+ +.+|.|.+||-+
T Consensus 332 ~g~L~Ve~l~~~PPg----------~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--p~~G~VRLDga~ 399 (580)
T COG4618 332 QGALSVERLTAAPPG----------QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGAD 399 (580)
T ss_pred CceeeEeeeeecCCC----------CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc--cCCCcEEecchh
Confidence 446999999985332 24679999999999999999999999999999999999885 468999999998
Q ss_pred CCC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHH-----HHHHHHHHHHHcCCCccccccccCCCC
Q 003437 125 VTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDE-----KKKRVYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 125 ~~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
++. ..+-+++||+|||-.||+. ||.|||.=.. ...+.+. +...|.+++ +.|.+-+||.||+.+
T Consensus 400 l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~-----~~~d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~~G- 470 (580)
T COG4618 400 LRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFG-----EEADPEKVIEAARLAGVHELI--LRLPQGYDTRIGEGG- 470 (580)
T ss_pred hhcCCHHHhccccCcCcccceecCC-cHHHHHHhcc-----ccCCHHHHHHHHHHcChHHHH--HhCcCCccCccCCCC-
Confidence 864 3456789999999999998 9999995221 1222221 223345554 356888999999654
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||+++||||-.+|.+++||||-|+||......+.+.|..++++|.|+|+++|.|+ +...+|+|++|++|+
T Consensus 471 ~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~ 548 (580)
T COG4618 471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGR 548 (580)
T ss_pred CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCCh
Confidence 579999999999999999999999999999999999999999999999999999999999997 567799999999999
Q ss_pred EEEEcCccchhhhhh
Q 003437 277 LVYMGSPVALPAHLA 291 (820)
Q Consensus 277 iv~~G~~~~~~~~f~ 291 (820)
+-.+|+.+|++..+.
T Consensus 549 ~~~FG~r~eVLa~~~ 563 (580)
T COG4618 549 IAAFGPREEVLAKVL 563 (580)
T ss_pred HHhcCCHHHHHHHhc
Confidence 999999999987764
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=297.87 Aligned_cols=193 Identities=30% Similarity=0.459 Sum_probs=171.0
Q ss_pred cccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC---ccccceEEEEccCCCCCCCC
Q 003437 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT---SYMKMVSSYVMQDDQLFPML 147 (820)
Q Consensus 71 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~~~l~~~l 147 (820)
..+||+++||.+++||..+|.||||||||||+|+++-+.. +++|++++.|++++. ..+|+.++||.|.+.||+.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis--p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~- 91 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD- 91 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC--CCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-
Confidence 4569999999999999999999999999999999999885 468999999999864 3578889999999999998
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCC
Q 003437 148 TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPT 226 (820)
Q Consensus 148 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPt 226 (820)
||++||.|...+|... ...++..++|+.++|.+. +++.+. .||||||||++|+|.|...|+||+|||||
T Consensus 92 tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~L~k~it-----~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 92 TVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSILTKNIT-----ELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred chhhccccchHHhccC-----CChHHHHHHHHHcCCchhhhcchhh-----hccchHHHHHHHHHHhhcCCceEEecCch
Confidence 9999999998877321 134667889999999875 455553 69999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 227 SGLDSTSAYSVVEKVKDIA-RTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 227 sgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|+||+.+++.|-++|.++. .+.+.++.+|||++. ..+.+|+++-+..|++
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq-a~rha~k~itl~~G~~ 212 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ-AIRHADKVITLQPGHA 212 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChHH-HhhhhheEEEeccCcc
Confidence 9999999999999999986 579999999999985 5678999999999875
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=358.71 Aligned_cols=221 Identities=28% Similarity=0.405 Sum_probs=192.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|++++|+... +.+.+|+|+||++++||+++|+||||||||||+|+|+|+.+ +++|+|.+||+++.
T Consensus 4 ~l~~~nl~~~y~~~~--------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~i~ 73 (648)
T PRK10535 4 LLELKDIRRSYPSGE--------EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--PTSGTYRVAGQDVA 73 (648)
T ss_pred EEEEeeEEEEeCCCC--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcC
Confidence 599999999995321 12459999999999999999999999999999999999985 46899999999876
Q ss_pred Ccc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 127 TSY-------MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 127 ~~~-------~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
... .++.++|++|++.+++.+|+.||+.+..... ..+.++.++++.++++.+||.+..|+.++ .|
T Consensus 74 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~-----~L 145 (648)
T PRK10535 74 TLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPS-----QL 145 (648)
T ss_pred cCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCcc-----cC
Confidence 421 1457899999999999999999999865432 23445667788999999999988777765 69
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
||||+||++|||+|+.+|++|||||||+|||+.++..+.++|++++++|+|+|+++|+++. + +.||++++|++|++++
T Consensus 146 S~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~-~-~~~d~i~~l~~G~i~~ 223 (648)
T PRK10535 146 SGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQV-A-AQAERVIEIRDGEIVR 223 (648)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHH-H-HhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999999998789999999999874 4 4699999999999999
Q ss_pred EcCccchh
Q 003437 280 MGSPVALP 287 (820)
Q Consensus 280 ~G~~~~~~ 287 (820)
.|++++..
T Consensus 224 ~g~~~~~~ 231 (648)
T PRK10535 224 NPPAQEKV 231 (648)
T ss_pred ecCccccc
Confidence 99998775
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=304.97 Aligned_cols=168 Identities=39% Similarity=0.592 Sum_probs=148.4
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|+++.|.++ +..+|+++|+++++||+++|+||||||||||+++|+|+++ +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~----------~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~--~~~G~i~~~g~~~~~ 68 (171)
T cd03228 1 IEFKNVSFSYPGR----------PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLRD 68 (171)
T ss_pred CEEEEEEEEcCCC----------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhhh
Confidence 4789999998542 1259999999999999999999999999999999999885 468999999998753
Q ss_pred c---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 128 S---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 128 ~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
. ..++.++|++|++.+++ .||.||+ ||||||
T Consensus 69 ~~~~~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~ 102 (171)
T cd03228 69 LDLESLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQR 102 (171)
T ss_pred cCHHHHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHH
Confidence 1 23566899999998876 5888876 999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
|||+||++|+.+|++|||||||+|||+.++..+.++|+++.+ ++|||++||++.. +.. ||++++|++|+
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~-~d~~~~l~~g~ 171 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLST-IRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-HHh-CCEEEEEcCCC
Confidence 999999999999999999999999999999999999999964 7999999999975 666 99999999885
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=314.70 Aligned_cols=201 Identities=25% Similarity=0.390 Sum_probs=160.4
Q ss_pred EEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc
Q 003437 49 EFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS 128 (820)
Q Consensus 49 ~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~ 128 (820)
.+.|+.+.|+.. +.+|+|+||++++||+++|+|||||||||||++|+|+.+ +++|+|.++|.++...
T Consensus 2 ~~~~~~~~~~~~-----------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~ 68 (218)
T cd03290 2 QVTNGYFSWGSG-----------LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEP 68 (218)
T ss_pred eeeeeEEecCCC-----------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCcccccc
Confidence 467888888532 359999999999999999999999999999999999985 4689999999876431
Q ss_pred -------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCC
Q 003437 129 -------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATH-------TYIGNE 194 (820)
Q Consensus 129 -------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~ig~~ 194 (820)
..++.++|++|++.+++ .|++||+.+... ... ++..++++.++|.+..+ +.. +.
T Consensus 69 ~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~ 136 (218)
T cd03290 69 SFEATRSRNRYSVAYAAQKPWLLN-ATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEI-GE 136 (218)
T ss_pred cccccchhhcceEEEEcCCCcccc-ccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCc-cc
Confidence 12456899999998884 699999987531 111 12345556666644322 111 12
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVE--KVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~--~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
.+..|||||||||+||++|+.+|++|||||||+|||+.++..+++ +++.+.+.|.|+|+++|+++. + ..||++++|
T Consensus 137 ~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l 214 (218)
T cd03290 137 RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAM 214 (218)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEe
Confidence 356799999999999999999999999999999999999999998 677776678999999999975 5 469999999
Q ss_pred eCCe
Q 003437 273 ARGR 276 (820)
Q Consensus 273 ~~G~ 276 (820)
++|.
T Consensus 215 ~~G~ 218 (218)
T cd03290 215 KDGS 218 (218)
T ss_pred cCCC
Confidence 9884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=308.56 Aligned_cols=191 Identities=24% Similarity=0.329 Sum_probs=161.4
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|.+ +.++ ++|+++++||+++|+|+||||||||+++|+|+.+ +++|+|.++|.++..
T Consensus 2 l~~~~l~~~~~~------------~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 66 (195)
T PRK13541 2 LSLHQLQFNIEQ------------KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNINN 66 (195)
T ss_pred eEEEEeeEEECC------------cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccCh
Confidence 789999999853 2255 4999999999999999999999999999999875 468999999998754
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRV 207 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv 207 (820)
.. ++.++|++|++.+++.+||+||+.+..... . ..+++.++++.+++.+..++.++ .||||||||+
T Consensus 67 ~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~-----~---~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rl 132 (195)
T PRK13541 67 IA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY-----N---SAETLYAAIHYFKLHDLLDEKCY-----SLSSGMQKIV 132 (195)
T ss_pred hh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc-----c---cHHHHHHHHHHcCCHhhhccChh-----hCCHHHHHHH
Confidence 22 345899999988888899999998865432 1 23467788999999877776654 6999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEE
Q 003437 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRI 269 (820)
Q Consensus 208 ~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 269 (820)
+||++|+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|+++|+++. +. .+|-+
T Consensus 133 ~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i~-~~~~~ 192 (195)
T PRK13541 133 AIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS-IK-SAQIL 192 (195)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc-cc-hhhee
Confidence 99999999999999999999999999999999998877779999999999974 33 36654
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=299.40 Aligned_cols=221 Identities=28% Similarity=0.417 Sum_probs=192.1
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECC-Ee
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG-KP 124 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G-~~ 124 (820)
..|+++||+++|++ .++|+++||++.+||+-+|||||||||||+|++|+|..+ +.+|+|+++| .+
T Consensus 4 ~iL~~~~vsVsF~G------------F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr--p~~G~v~f~g~~d 69 (249)
T COG4674 4 IILYLDGVSVSFGG------------FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR--PQEGEVLFDGDTD 69 (249)
T ss_pred ceEEEeceEEEEcc------------eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC--CCcceEEEcCchh
Confidence 46999999999975 349999999999999999999999999999999999764 5689999999 77
Q ss_pred CCCcc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 003437 125 VTTSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP-----SISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195 (820)
Q Consensus 125 ~~~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~ 195 (820)
+.... .+..+|-=||.|..|+.+||+|||..+.....+- .....+.+++++++|+..||.+.++...+
T Consensus 70 l~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~--- 146 (249)
T COG4674 70 LTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA--- 146 (249)
T ss_pred hccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh---
Confidence 76422 2445788899999999999999999886432110 01123446789999999999999998877
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.||-||||++.|++-|+++|++|+||||++|+-.....+.-++|+.++. +.+|+++.||+.. +.+++|+|.+|++|
T Consensus 147 --~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~F-vr~~A~~VTVlh~G 222 (249)
T COG4674 147 --LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGF-VREIADKVTVLHEG 222 (249)
T ss_pred --hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHH-HHHhhheeEEEecc
Confidence 5999999999999999999999999999999999999999999999986 5899999999997 89999999999999
Q ss_pred eEEEEcCccchh
Q 003437 276 RLVYMGSPVALP 287 (820)
Q Consensus 276 ~iv~~G~~~~~~ 287 (820)
.+...|+.+++.
T Consensus 223 ~VL~EGsld~v~ 234 (249)
T COG4674 223 SVLAEGSLDEVQ 234 (249)
T ss_pred ceeecccHHHhh
Confidence 999999987664
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=349.86 Aligned_cols=217 Identities=21% Similarity=0.377 Sum_probs=178.5
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.+ +.+|+++|+++++||+++|+||||||||||+|+|+|+.+ +++|+|.++|+++
T Consensus 249 ~~i~~~~l~~~~--------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 312 (491)
T PRK10982 249 VILEVRNLTSLR--------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKI 312 (491)
T ss_pred cEEEEeCccccc--------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEEC
Confidence 369999999862 138999999999999999999999999999999999885 4689999999987
Q ss_pred CCc----cccceEEEEccCC---CCCCCCCHHHHHHHHH-H-hcCCCC-CCHHHHHHHHHHHHHHcCCC-ccccccccCC
Q 003437 126 TTS----YMKMVSSYVMQDD---QLFPMLTVFETFMFAA-E-VRLPPS-ISRDEKKKRVYELLDQLGLR-SATHTYIGNE 194 (820)
Q Consensus 126 ~~~----~~~~~~gyv~Q~~---~l~~~lTV~e~l~~~~-~-~~~~~~-~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~ 194 (820)
... ..++.++|++|+. .+++.+|+.+|+.+.. . ...... .+....++++.++++.+++. +..++.++
T Consensus 313 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 390 (491)
T PRK10982 313 NNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIG-- 390 (491)
T ss_pred CCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccc--
Confidence 532 1245589999985 4788888887743321 0 000001 12334456788999999995 45666665
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+|||||||||+||++|+.+|+||||||||+|||+.++..++++|++++++|.|||++|||++. +..+||++++|++
T Consensus 391 ---~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~-~~~~~d~v~~l~~ 466 (491)
T PRK10982 391 ---SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPE-LLGITDRILVMSN 466 (491)
T ss_pred ---cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHH-HHhhCCEEEEEEC
Confidence 699999999999999999999999999999999999999999999998889999999999985 7889999999999
Q ss_pred CeEEEEcCcc
Q 003437 275 GRLVYMGSPV 284 (820)
Q Consensus 275 G~iv~~G~~~ 284 (820)
|+++..++++
T Consensus 467 g~i~~~~~~~ 476 (491)
T PRK10982 467 GLVAGIVDTK 476 (491)
T ss_pred CEEEEEEccc
Confidence 9999877654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=389.07 Aligned_cols=215 Identities=22% Similarity=0.319 Sum_probs=183.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+.. .+++|+|+|++|++||.+||+|+||||||||+++|.|++. +.+|+|.+||.++.
T Consensus 1234 ~I~f~nVsf~Y~~~----------~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~di~ 1301 (1495)
T PLN03232 1234 SIKFEDVHLRYRPG----------LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCDVA 1301 (1495)
T ss_pred cEEEEEEEEEECCC----------CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEEhh
Confidence 59999999999532 2359999999999999999999999999999999999985 46899999999986
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~ 196 (820)
. ...|++++|||||+.+|+. |++|||.+.. ..++ +.+.++++..++. +..|+.+|+. .
T Consensus 1302 ~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~-G 1369 (1495)
T PLN03232 1302 KFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSEG-G 1369 (1495)
T ss_pred hCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecCC-C
Confidence 4 3467889999999999987 9999997542 1233 3455566665553 4568888754 3
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..||||||||++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|+|+++|+++. +. .||+|++|++|+
T Consensus 1370 ~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t-i~-~~DrIlVL~~G~ 1446 (1495)
T PLN03232 1370 ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT-II-DCDKILVLSSGQ 1446 (1495)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-HH-hCCEEEEEECCE
Confidence 5799999999999999999999999999999999999999999999874 47999999999975 44 499999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
+++.|+++++++
T Consensus 1447 ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1447 VLEYDSPQELLS 1458 (1495)
T ss_pred EEEECCHHHHHh
Confidence 999999998864
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=351.06 Aligned_cols=209 Identities=25% Similarity=0.391 Sum_probs=174.3
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||||+|+|+++ +++|+|.++|.
T Consensus 2 l~i~~ls~~~~~------------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~---- 63 (530)
T PRK15064 2 LSTANITMQFGA------------KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE--PSAGNVSLDPN---- 63 (530)
T ss_pred EEEEEEEEEeCC------------cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC----
Confidence 889999999953 249999999999999999999999999999999999885 46899999873
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHH-hc-----------CCC-C----------------CCHHHHHHHHHHHH
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAE-VR-----------LPP-S----------------ISRDEKKKRVYELL 178 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~-~~-----------~~~-~----------------~~~~~~~~~v~~~l 178 (820)
..++|++|++.+++.+||+|++.++.. .+ .+. . ....+.++++.+++
T Consensus 64 ----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 139 (530)
T PRK15064 64 ----ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELL 139 (530)
T ss_pred ----CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 358999999989999999999987531 00 000 0 00012345788999
Q ss_pred HHcCCCccc-cccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 003437 179 DQLGLRSAT-HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQ 257 (820)
Q Consensus 179 ~~lgL~~~~-~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 257 (820)
+.+||.+.. +..++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++ .|.|||+++|+
T Consensus 140 ~~~gl~~~~~~~~~~-----~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd 211 (530)
T PRK15064 140 LGVGIPEEQHYGLMS-----EVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHD 211 (530)
T ss_pred HhCCCChhHhcCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCC
Confidence 999997643 34444 6999999999999999999999999999999999999999999863 58999999999
Q ss_pred ccHHHHhhcCEEEEEeCCeE-EEEcCccchh
Q 003437 258 PSYRIQMLLDRIIVLARGRL-VYMGSPVALP 287 (820)
Q Consensus 258 ~~~~i~~~~D~v~lL~~G~i-v~~G~~~~~~ 287 (820)
++. +.++||++++|++|++ ++.|++++..
T Consensus 212 ~~~-~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 212 RHF-LNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred HHH-HHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 985 7889999999999999 4889887664
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=352.42 Aligned_cols=211 Identities=27% Similarity=0.359 Sum_probs=175.1
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ ++.+|+|+||+|++||+++|+||||||||||||+|+|+++ +++|+|.+++
T Consensus 5 ~~l~i~~l~~~y~~-----------~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~--p~~G~i~~~~--- 68 (556)
T PRK11819 5 YIYTMNRVSKVVPP-----------KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAP--- 68 (556)
T ss_pred EEEEEeeEEEEeCC-----------CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecC---
Confidence 46999999999952 1349999999999999999999999999999999999885 4689999974
Q ss_pred CCccccceEEEEccCCCCCCCCCHHHHHHHHHH-hc-----C-----CCCCCH----------------------HHHHH
Q 003437 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAE-VR-----L-----PPSISR----------------------DEKKK 172 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~-~~-----~-----~~~~~~----------------------~~~~~ 172 (820)
...+|||+|++.+++.+||.||+.++.. .+ . ...... .+..+
T Consensus 69 -----~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (556)
T PRK11819 69 -----GIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDS 143 (556)
T ss_pred -----CCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHH
Confidence 2458999999999999999999987532 10 0 000000 01245
Q ss_pred HHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEE
Q 003437 173 RVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVL 252 (820)
Q Consensus 173 ~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi 252 (820)
+++++++.+||.. .++.++ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++. .|||
T Consensus 144 ~~~~~l~~~gl~~-~~~~~~-----~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tvi 214 (556)
T PRK11819 144 QLEIAMDALRCPP-WDAKVT-----KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVV 214 (556)
T ss_pred HHHHHHHhCCCCc-ccCchh-----hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEE
Confidence 6888999999964 566665 699999999999999999999999999999999999999999999873 5999
Q ss_pred EEEcCccHHHHhhcCEEEEEeCCeEE-EEcCccchh
Q 003437 253 MTIHQPSYRIQMLLDRIIVLARGRLV-YMGSPVALP 287 (820)
Q Consensus 253 ~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~~ 287 (820)
++||+++. +..+||+|++|++|+++ +.|+.++..
T Consensus 215 iisHd~~~-~~~~~d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 215 AVTHDRYF-LDNVAGWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred EEeCCHHH-HHhhcCeEEEEeCCEEEEecCCHHHHH
Confidence 99999975 78899999999999986 788876543
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=388.27 Aligned_cols=216 Identities=24% Similarity=0.334 Sum_probs=184.5
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|... ..++|+|+|++|+|||.+||+|+||||||||+++|.|++. +.+|+|++||.++
T Consensus 1236 g~I~f~nVsf~Y~~~----------~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~dI 1303 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPE----------LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCDI 1303 (1622)
T ss_pred CcEEEEEEEEEeCCC----------CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEec
Confidence 359999999999532 1359999999999999999999999999999999999985 4689999999998
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEG 195 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~ 195 (820)
.. ...|++++|||||+.+|+. |++|||.++. ..++ +.+.++++..++ ++..|+.+|+.
T Consensus 1304 ~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~td----eei~~Al~~a~l~~~I~~lp~GLdt~Vge~- 1371 (1622)
T PLN03130 1304 SKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHND----ADLWESLERAHLKDVIRRNSLGLDAEVSEA- 1371 (1622)
T ss_pred ccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCCH----HHHHHHHHHcCcHHHHHhCccccCccccCC-
Confidence 65 3467889999999999987 9999997642 1233 335555555544 34678888764
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
...||||||||++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|+|+++|+++. +. .||||++|++|
T Consensus 1372 G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t-I~-~~DrIlVLd~G 1448 (1622)
T PLN03130 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-II-DCDRILVLDAG 1448 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH-HH-hCCEEEEEECC
Confidence 35799999999999999999999999999999999999999999999875 48999999999985 54 49999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+++++++
T Consensus 1449 ~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1449 RVVEFDTPENLLS 1461 (1622)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999999874
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=356.87 Aligned_cols=188 Identities=31% Similarity=0.526 Sum_probs=159.7
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+|+|+.+ +++|+|+|+++++||.+||+||||||||||+|+|+|+.+ +.+|+|.+||.++
T Consensus 333 ~~I~~~~vsf~Y~~~-----------~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p~~G~I~i~g~~i 399 (529)
T TIGR02868 333 PTLELRDLSFGYPGS-----------PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD--PLQGEVTLDGVSV 399 (529)
T ss_pred ceEEEEEEEEecCCC-----------CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEh
Confidence 359999999999632 249999999999999999999999999999999999985 4689999999987
Q ss_pred CC--ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 003437 126 TT--SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEGR 196 (820)
Q Consensus 126 ~~--~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~ 196 (820)
.. ..+++.++||+|++.+|+. |++|||.++.. ..++ +++.++++..++. +..||.+|+.+
T Consensus 400 ~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~-----~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige~G- 468 (529)
T TIGR02868 400 SSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGRP-----DATD----EELWAALERVGLADWLRSLPDGLDTVLGEGG- 468 (529)
T ss_pred hhHHHHHHhheEEEccCcccccc-cHHHHHhccCC-----CCCH----HHHHHHHHHcCCHHHHHhCcccccchhcccc-
Confidence 64 3456789999999999987 99999998621 1233 3455666665553 45689998754
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCc
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQP 258 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 258 (820)
..||||||||++|||||+++|++|+||||||+||+.+...|.+.|+++. +++|+|+++|++
T Consensus 469 ~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 469 ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 4699999999999999999999999999999999999999999999864 479999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=312.18 Aligned_cols=194 Identities=29% Similarity=0.437 Sum_probs=167.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|..+.. .+ ......+++||||+|++||.++|+|+||||||||-|+|.|++. +++|+|+++|+++.
T Consensus 4 ll~v~~l~k~f~~~~~-~~--~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~--pt~G~i~f~g~~i~ 78 (268)
T COG4608 4 LLEVKNLKKYFPVGKG-FG--KKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE--PTSGEILFEGKDIT 78 (268)
T ss_pred eEEEeccEEEEecccc-cC--cccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC--CCCceEEEcCcchh
Confidence 5999999999975431 00 0112479999999999999999999999999999999999985 57899999999865
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSGGerq 205 (820)
... +++..+++.++|+.+||.. .++ ++|++|||||||
T Consensus 79 ~~~-------------------------------------~~~~~~~v~elL~~Vgl~~~~~~-----ryPhelSGGQrQ 116 (268)
T COG4608 79 KLS-------------------------------------KEERRERVLELLEKVGLPEEFLY-----RYPHELSGGQRQ 116 (268)
T ss_pred hcc-------------------------------------hhHHHHHHHHHHHHhCCCHHHhh-----cCCcccCchhhh
Confidence 321 2345678999999999865 333 456789999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
|++|||||+.+|+++++|||+|+||...+.+++++|+++.++ |.|.++++||.+. +..++||+.+|+.|+||+.|+.+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~v-v~~isdri~VMy~G~iVE~g~~~ 195 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSV-VRYISDRIAVMYLGKIVEIGPTE 195 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHh-hhhhcccEEEEecCceeEecCHH
Confidence 999999999999999999999999999999999999999864 9999999999984 88899999999999999999998
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 196 ~~~~ 199 (268)
T COG4608 196 EVFS 199 (268)
T ss_pred HHhh
Confidence 8864
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=319.86 Aligned_cols=202 Identities=25% Similarity=0.419 Sum_probs=162.7
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+++|+++. . +.+|+|+|++|++||+++|+||||||||||+++|+|+++ +.+|+|.++|
T Consensus 37 ~~~l~i~nls~~--~------------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~--p~~G~I~i~g-- 98 (282)
T cd03291 37 DNNLFFSNLCLV--G------------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE--PSEGKIKHSG-- 98 (282)
T ss_pred CCeEEEEEEEEe--c------------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC--
Confidence 345999999985 1 249999999999999999999999999999999999885 4689999988
Q ss_pred CCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCCCC
Q 003437 125 VTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT-------HTYIGNEGRR 197 (820)
Q Consensus 125 ~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~ig~~~~~ 197 (820)
.++|++|++.+++. ||+||+.+.... .. .++.+.++.+++.+.. ++.++ ..+.
T Consensus 99 --------~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~-~~~~ 158 (282)
T cd03291 99 --------RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLG-EGGI 158 (282)
T ss_pred --------EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceec-CCCC
Confidence 27999999988875 999999874311 11 1223344444443322 22222 2345
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKV-KDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L-~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.||||||||++||++|+.+|++|||||||+|||+.++..+.+.+ +.+. ++.|||+++|++.. + ..||++++|++|+
T Consensus 159 ~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~G~ 235 (282)
T cd03291 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGS 235 (282)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999865 5554 57999999999975 4 5799999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
+++.|+++++.
T Consensus 236 i~~~g~~~~~~ 246 (282)
T cd03291 236 SYFYGTFSELQ 246 (282)
T ss_pred EEEECCHHHHH
Confidence 99999987764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=311.90 Aligned_cols=234 Identities=30% Similarity=0.418 Sum_probs=194.3
Q ss_pred eEEEEEEEEEECcccccccc---------cccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceE
Q 003437 47 GLEFKNLSYSIMKKQKKDGV---------WITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGS 117 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~---------~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~ 117 (820)
.+..+||++.|....+..+. .......+++|+||+|++|++++++|||||||||+||+|+|++. |++|+
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~ 80 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGK 80 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCe
Confidence 37788888887542211110 11123458999999999999999999999999999999999986 46899
Q ss_pred EEECCEeCCC--ccccceEEEEc-cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 003437 118 VRIDGKPVTT--SYMKMVSSYVM-QDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNE 194 (820)
Q Consensus 118 I~i~G~~~~~--~~~~~~~gyv~-Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~ 194 (820)
|.++|.+.-. ..+-+.+++|+ |.-.+...+.+.|.+.....++ .++.++.+++.+.+.+.|+|+...+..+
T Consensus 81 v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v--- 154 (325)
T COG4586 81 VRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV--- 154 (325)
T ss_pred EEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh---
Confidence 9999987532 12234456665 5556777777888887766554 4778889999999999999998888776
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
|.||-|||.|+.||.+|+++|+||||||||-|||..++..|.+.|++..+ ++.||+++||+.+. +..+||||++|+
T Consensus 155 --r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~d-i~~lc~rv~~I~ 231 (325)
T COG4586 155 --RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDD-IATLCDRVLLID 231 (325)
T ss_pred --hhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhh-HHHhhhheEEee
Confidence 57999999999999999999999999999999999999999999999975 59999999999985 899999999999
Q ss_pred CCeEEEEcCccchhhhhh
Q 003437 274 RGRLVYMGSPVALPAHLA 291 (820)
Q Consensus 274 ~G~iv~~G~~~~~~~~f~ 291 (820)
.|+++|.|+.+++.+.|.
T Consensus 232 ~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 232 QGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred CCcEeecccHHHHHHHhC
Confidence 999999999988876654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=349.24 Aligned_cols=217 Identities=24% Similarity=0.308 Sum_probs=174.8
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+.+ .+++|+|+++|+++
T Consensus 259 ~~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~-~~~~G~i~~~g~~~ 325 (490)
T PRK10938 259 PRIVLNNGVVSYND------------RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP-QGYSNDLTLFGRRR 325 (490)
T ss_pred ceEEEeceEEEECC------------eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-cccCCeEEEecccC
Confidence 46999999999953 249999999999999999999999999999999999753 22589999999876
Q ss_pred CCc----cccceEEEEccCCCCCC--CCCHHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 003437 126 TTS----YMKMVSSYVMQDDQLFP--MLTVFETFMFAAEV--RLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGR 196 (820)
Q Consensus 126 ~~~----~~~~~~gyv~Q~~~l~~--~lTV~e~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~ 196 (820)
... ..++.++|++|++.++. ..|+++++.+.... ....... .+.+++++++++.+||.+ ..++.++
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~---- 400 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFH---- 400 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCchh----
Confidence 321 13456899999876543 35777776543211 0000112 233567899999999987 6777765
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEEcCccHHHHh-hcCEEEEEeC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG-SIVLMTIHQPSYRIQM-LLDRIIVLAR 274 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~-~~D~v~lL~~ 274 (820)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++| .|||++||+++. +.+ +||++++|++
T Consensus 401 -~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~-~~~~~~d~v~~l~~ 478 (490)
T PRK10938 401 -SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAED-APACITHRLEFVPD 478 (490)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhh-hhhhhheeEEEecC
Confidence 699999999999999999999999999999999999999999999998775 579999999975 665 5899999999
Q ss_pred CeEEEEcC
Q 003437 275 GRLVYMGS 282 (820)
Q Consensus 275 G~iv~~G~ 282 (820)
|++++.-.
T Consensus 479 G~i~~~~~ 486 (490)
T PRK10938 479 GDIYRYVQ 486 (490)
T ss_pred CceEEeec
Confidence 99887543
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=296.92 Aligned_cols=163 Identities=32% Similarity=0.469 Sum_probs=143.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|++++|+++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++ +.+|+|.++|.
T Consensus 1 i~~~~~~~~~~~~-----------~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~---- 63 (166)
T cd03223 1 IELENLSLATPDG-----------RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEG---- 63 (166)
T ss_pred CEEEEEEEEcCCC-----------CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCC----
Confidence 4789999998421 249999999999999999999999999999999999875 46899999873
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRV 207 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv 207 (820)
+.++|++|++.++ ..||+||+.+. . +..||||||||+
T Consensus 64 ----~~i~~~~q~~~~~-~~tv~~nl~~~---------------------------------~-----~~~LS~G~~~rv 100 (166)
T cd03223 64 ----EDLLFLPQRPYLP-LGTLREQLIYP---------------------------------W-----DDVLSGGEQQRL 100 (166)
T ss_pred ----ceEEEECCCCccc-cccHHHHhhcc---------------------------------C-----CCCCCHHHHHHH
Confidence 5689999998765 56999998642 1 236999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 208 ~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
+|||+|+.+|++|+|||||+|||+.++..+.+.|+++ +.|+|++||+++. ...||++++|++|
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~--~~~~d~i~~l~~~ 163 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPSL--WKFHDRVLDLDGE 163 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChhH--HhhCCEEEEEcCC
Confidence 9999999999999999999999999999999999987 5899999999863 4689999999875
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=306.84 Aligned_cols=219 Identities=27% Similarity=0.380 Sum_probs=186.0
Q ss_pred CCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE
Q 003437 44 PGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK 123 (820)
Q Consensus 44 ~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~ 123 (820)
+.+.|+++|+++.|.+ ++||+|+|++|++||..+|+|||||||||||++++|...| .+|.+.+.|+
T Consensus 28 ~~~li~l~~v~v~r~g------------k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~p--ssg~~~~~G~ 93 (257)
T COG1119 28 NEPLIELKNVSVRRNG------------KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP--SSGDVTLLGR 93 (257)
T ss_pred CcceEEecceEEEECC------------EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCC--CCCceeeeee
Confidence 3456999999999865 4599999999999999999999999999999999998754 4899999999
Q ss_pred eCCC----ccccceEEEEccC--CCCCCCCCHHHHHHHHHH--hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 003437 124 PVTT----SYMKMVSSYVMQD--DQLFPMLTVFETFMFAAE--VRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195 (820)
Q Consensus 124 ~~~~----~~~~~~~gyv~Q~--~~l~~~lTV~e~l~~~~~--~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~ 195 (820)
.... ...|+.+|||.-. ..+.+..+|+|-+.-+.. .-.......++..+++..+++.+|+.+.+|+..+
T Consensus 94 ~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~--- 170 (257)
T COG1119 94 RFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG--- 170 (257)
T ss_pred eccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh---
Confidence 8754 3467889999643 345566788887754432 1112212345667889999999999999999987
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART--GSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~--g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
.||-||||||.|||||+.+|++||||||++|||...++.+++.|.+++.. +.++|++||+.+ ++-..++++++|+
T Consensus 171 --~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~ 247 (257)
T COG1119 171 --SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLK 247 (257)
T ss_pred --hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEee
Confidence 59999999999999999999999999999999999999999999999865 899999999998 5888899999999
Q ss_pred CCeEEEEcC
Q 003437 274 RGRLVYMGS 282 (820)
Q Consensus 274 ~G~iv~~G~ 282 (820)
+|+++++|.
T Consensus 248 ~g~v~~~g~ 256 (257)
T COG1119 248 EGEVVAQGK 256 (257)
T ss_pred CCceeeccc
Confidence 999999874
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=353.54 Aligned_cols=200 Identities=34% Similarity=0.515 Sum_probs=169.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+|+|+++ ++++|+|+|+++++||.++|+||||||||||+|+|+|+.+ +.+|+|.+||.++.
T Consensus 320 ~i~~~~v~f~y~~~----------~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~I~~~g~~i~ 387 (529)
T TIGR02857 320 SLEFSGLSVAYPGR----------RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD--PTEGSIAVNGVPLA 387 (529)
T ss_pred eEEEEEEEEECCCC----------CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEehh
Confidence 59999999999642 2359999999999999999999999999999999999885 46799999999886
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~ 196 (820)
. ..+++.++||+|++.+|+. |++||+.++.. ..++ +.+.++++..++. +..||.+|+. .
T Consensus 388 ~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~-g 456 (529)
T TIGR02857 388 DADADSWRDQIAWVPQHPFLFAG-TIAENIRLARP-----DASD----AEIRRALERAGLDEFVAALPQGLDTLIGEG-G 456 (529)
T ss_pred hCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCC-----CCCH----HHHHHHHHHcCcHHHHHhCcccccchhccc-c
Confidence 4 3457789999999999986 99999987531 1222 3455666666654 3467888753 4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
..||||||||++|||+|+++|++|+||||||+||+.+...+.+.|+++. +++|+|+++|+++. + +.||+|++|
T Consensus 457 ~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~-~-~~~d~i~~l 529 (529)
T TIGR02857 457 AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLAL-A-ERADRIVVL 529 (529)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-HhCCEEEeC
Confidence 5799999999999999999999999999999999999999999999985 58999999999964 4 679999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=348.79 Aligned_cols=203 Identities=25% Similarity=0.388 Sum_probs=173.0
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||||+|+|+++ +++|+|.++|.
T Consensus 318 ~~l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 318 NALEVENLTKGFDN------------GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred ceEEEEeeEEeeCC------------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 36999999999953 249999999999999999999999999999999999875 46799999873
Q ss_pred CCccccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCChH
Q 003437 126 TTSYMKMVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSGG 202 (820)
+.+||++|++. +++.+||.|++.+... . ...+++++++++.+|+. +..++.++ .||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~---~-----~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWRQ---E-----GDDEQAVRGTLGRLLFSQDDIKKSVK-----VLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhcc---C-----CccHHHHHHHHHHcCCChhHhcCccc-----ccCHH
Confidence 45899999864 5667899999864211 0 11235688999999994 56676665 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE-EEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV-YMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G 281 (820)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||+.. +..+||++++|++|+++ +.|
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~-~~~~~d~i~~l~~g~i~~~~g 518 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDREF-VSSLATRIIEITPDGVVDFSG 518 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHHH-HHHhCCEEEEEECCeEEEcCC
Confidence 999999999999999999999999999999999999999887 4599999999974 78899999999999998 788
Q ss_pred Cccchh
Q 003437 282 SPVALP 287 (820)
Q Consensus 282 ~~~~~~ 287 (820)
+++++.
T Consensus 519 ~~~~~~ 524 (530)
T PRK15064 519 TYEEYL 524 (530)
T ss_pred CHHHHH
Confidence 776654
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=349.62 Aligned_cols=205 Identities=22% Similarity=0.347 Sum_probs=170.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+|+|+++ +++|+|+|+++++||.++|+||||||||||+++|+|+++ +.+|+|.+||+++.
T Consensus 322 ~i~~~~v~f~y~~~-----------~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~~ 388 (547)
T PRK10522 322 TLELRNVTFAYQDN-----------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKPVT 388 (547)
T ss_pred eEEEEEEEEEeCCC-----------CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECC
Confidence 59999999999632 248999999999999999999999999999999999885 46899999999986
Q ss_pred Cc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 127 TS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
.. ..++.++||+|++.+|+. |++|| . . ...++.+++.++.+++.+..+..-+......|||||
T Consensus 389 ~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~------~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq 454 (547)
T PRK10522 389 AEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G------K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQ 454 (547)
T ss_pred CCCHHHHhhheEEEecChhHHHH-hhccc---c------C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHH
Confidence 42 456789999999998876 88876 1 0 122346778889999876543211100124799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
|||++|||||+++|++|+|||||++||+.+...+.+.|.++.+ .++|+|+++|+++ ....||++++|++|++++.
T Consensus 455 ~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 455 KKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999987654 5899999999986 3567999999999999876
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=382.72 Aligned_cols=216 Identities=23% Similarity=0.343 Sum_probs=184.5
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|+.. ...+|+||||+|++||.+||+|+||||||||+++|.|++. +.+|+|++||.++
T Consensus 1307 G~I~f~nVsf~Y~~~----------~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~di 1374 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREG----------LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGREI 1374 (1560)
T ss_pred CeEEEEEEEEEeCCC----------CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEc
Confidence 359999999999642 1359999999999999999999999999999999999985 4679999999998
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-------ATHTYIGNEG 195 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~ 195 (820)
.. ..+|+.++||||++.+|+. ||+|||.... ..++ +.+.++++..||.+ ..|+.+|+.
T Consensus 1375 ~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge~- 1442 (1560)
T PTZ00243 1375 GAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EASS----AEVWAALELVGLRERVASESEGIDSRVLEG- 1442 (1560)
T ss_pred ccCCHHHHHhcceEECCCCccccc-cHHHHhCccc------CCCH----HHHHHHHHHCCChHHHhhCcccccccccCC-
Confidence 64 3467889999999999987 9999996421 1233 45667777777653 468888764
Q ss_pred CCCCChHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 196 RRGVSGGERRRVSIGIDIIHK-PSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~-P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
...||||||||++|||||+++ |+|||||||||+||+.+...|.+.|++.. +++|||+++|+++. + ..||+|++|++
T Consensus 1443 G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~t-i-~~~DrIlVLd~ 1519 (1560)
T PTZ00243 1443 GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHT-V-AQYDKIIVMDH 1519 (1560)
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHH-H-HhCCEEEEEEC
Confidence 357999999999999999996 89999999999999999999999999864 47999999999974 4 56999999999
Q ss_pred CeEEEEcCccchhh
Q 003437 275 GRLVYMGSPVALPA 288 (820)
Q Consensus 275 G~iv~~G~~~~~~~ 288 (820)
|++++.|++++++.
T Consensus 1520 G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1520 GAVAEMGSPRELVM 1533 (1560)
T ss_pred CEEEEECCHHHHHh
Confidence 99999999998864
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=306.69 Aligned_cols=194 Identities=17% Similarity=0.155 Sum_probs=160.9
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEE-ECCEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVR-IDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~-i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
+|+|||++|++||+++|+||||||||||+|+|+|+++ +.+|+|. ++|..+. +.+++.+++.+|++||
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~sG~i~~~~~~~~~----------~~~~~~l~~~ltv~en 69 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA--PDEGDFIGLRGDALP----------LGANSFILPGLTGEEN 69 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCCCEEEecCceec----------cccccccCCcCcHHHH
Confidence 7999999999999999999999999999999999875 4689997 7775431 2345678899999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST 232 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~ 232 (820)
+.+....+. .+.++. .+.+.+.++|++..++.++ .||||||||++||++|+.+|+++||||||++||+.
T Consensus 70 l~~~~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEF---SHFCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHH---HHHHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998766431 233222 2334566788877777765 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhhhhhc
Q 003437 233 SAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAG 292 (820)
Q Consensus 233 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~ 292 (820)
++..+.+.|.+..+ ++|+|+++|++.. +..+||++++|++|++++.|+.+++.++++.
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~~-~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPRL-IKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHHH-HHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99999998865443 4689999999984 7789999999999999999999888766543
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=347.93 Aligned_cols=211 Identities=27% Similarity=0.359 Sum_probs=172.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ .+.+|+|+||+|++||+++|+|||||||||||++|+|+.+ +++|+|.+++
T Consensus 4 ~i~~~nls~~~~~-----------~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~--p~~G~i~~~~---- 66 (552)
T TIGR03719 4 IYTMNRVSKVVPP-----------KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFNGEARPAP---- 66 (552)
T ss_pred EEEEeeEEEecCC-----------CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecC----
Confidence 5999999999951 1249999999999999999999999999999999999875 4689999975
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHh-cC-----------CCCCCHH---------------------HHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEV-RL-----------PPSISRD---------------------EKKKR 173 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~-~~-----------~~~~~~~---------------------~~~~~ 173 (820)
+..+|||+|++.+++.+||+||+.++... +. ......+ +...+
T Consensus 67 ----~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (552)
T TIGR03719 67 ----GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRK 142 (552)
T ss_pred ----CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 24589999999999999999999875321 00 0000010 01245
Q ss_pred HHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE
Q 003437 174 VYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLM 253 (820)
Q Consensus 174 v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~ 253 (820)
+.++++.+|+.. .++.++ .|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||+
T Consensus 143 ~~~~l~~~~l~~-~~~~~~-----~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIi 213 (552)
T TIGR03719 143 LEIAMDALRCPP-WDADVT-----KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVA 213 (552)
T ss_pred HHHHHhhCCCCc-ccCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEE
Confidence 677888888853 455554 69999999999999999999999999999999999999999999876 359999
Q ss_pred EEcCccHHHHhhcCEEEEEeCCeEE-EEcCccchhh
Q 003437 254 TIHQPSYRIQMLLDRIIVLARGRLV-YMGSPVALPA 288 (820)
Q Consensus 254 ~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~~~ 288 (820)
+||++.. +..+||++++|++|+++ +.|+.++..+
T Consensus 214 isHd~~~-~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 214 VTHDRYF-LDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred EeCCHHH-HHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 9999985 78899999999999976 7788776543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=312.15 Aligned_cols=179 Identities=25% Similarity=0.323 Sum_probs=152.4
Q ss_pred ceeeeeEEEe-----CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCC
Q 003437 74 LLHDISGQAI-----RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLT 148 (820)
Q Consensus 74 iL~~vs~~i~-----~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lT 148 (820)
.++|+++++. +||+++|+||||||||||+++|+|+++ +.+|+|.++|. .++|++|+...++.+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--p~~G~i~~~g~---------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK--PDEGDIEIELD---------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCc---------eEEEecccccCCCCCC
Confidence 5677777665 799999999999999999999999885 46899999984 4799999987777789
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 003437 149 VFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSG 228 (820)
Q Consensus 149 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsg 228 (820)
|+|++.+...... . ....+.++++.+||.+..++.++ .|||||||||+||++|+.+|+++||||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREVP-----ELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976533110 1 12346788999999887777665 6999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 229 LDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 229 LD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
||+.++..+.++|+++++ .|+|||+++|++.. +..+||++++|+++.
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~-~~~~~d~i~~l~~~~ 193 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDIIM-IDYLADRLIVFEGEP 193 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEcCCC
Confidence 999999999999999986 48999999999974 778999999997643
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=382.43 Aligned_cols=216 Identities=24% Similarity=0.325 Sum_probs=184.2
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|+.. ...+|+|||++|+|||.+||+|+||||||||+++|.|++. +.+|+|.+||.++
T Consensus 1283 g~I~f~nVsf~Y~~~----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~dI 1350 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLNI 1350 (1522)
T ss_pred CcEEEEEEEEEeCCC----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEEc
Confidence 459999999999642 1359999999999999999999999999999999999885 4679999999998
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEG 195 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~ 195 (820)
.. ...|+.++|||||+.+|+. |++|||.... ..++ +.+.++++..++. +.+|+.+|+.
T Consensus 1351 ~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~- 1418 (1522)
T TIGR00957 1351 AKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSD----EEVWWALELAHLKTFVSALPDKLDHECAEG- 1418 (1522)
T ss_pred cccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCH----HHHHHHHHHcCcHHHHhhCccCCCceecCC-
Confidence 75 3467889999999999997 9999996321 1233 3355666666654 4578888763
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
...||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|||+++|+++. +. .||||++|++|
T Consensus 1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t-i~-~~DrIlVld~G 1495 (1522)
T TIGR00957 1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT-IM-DYTRVIVLDKG 1495 (1522)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-HH-hCCEEEEEECC
Confidence 35799999999999999999999999999999999999999999999864 47999999999975 44 59999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
+|++.|+++++++
T Consensus 1496 ~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1496 EVAEFGAPSNLLQ 1508 (1522)
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=347.93 Aligned_cols=211 Identities=22% Similarity=0.318 Sum_probs=172.8
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+|+|+++.. ..+.+|+|+|+++++||.++|+||||||||||+++|+|++. +++|+|.+||.++
T Consensus 336 ~~i~~~~v~f~y~~~~~-------~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--p~~G~i~~~g~~i 406 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEG-------SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI--PQEGEILLDGAAV 406 (555)
T ss_pred ceEEEEEEEEEeCCCCC-------CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 35999999999964210 12359999999999999999999999999999999999885 4689999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc-cCCCCCCCCh
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYI-GNEGRRGVSG 201 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~i-g~~~~~~LSG 201 (820)
... ..++.++||+|++.+|.. |+++|+. ++..++++.++++.+++.+..+... |-+....|||
T Consensus 407 ~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~------------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSg 473 (555)
T TIGR01194 407 SADSRDDYRDLFSAIFADFHLFDD-LIGPDEG------------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALST 473 (555)
T ss_pred CCCCHHHHHhhCcEEccChhhhhh-hhhcccc------------cchhHHHHHHHHHHcCCchhhcccccccCCcccCCH
Confidence 652 356778999999999876 8888741 1123456778899999877544332 1122357999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVK-DIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~-~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
|||||++|||+|+.+|++|||||||++||+.+...+.+.+. .+..+|+|+|+++|+++ ..+.||+|++|++|++++.
T Consensus 474 Gq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999998764 45567899999999986 3468999999999999853
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=377.07 Aligned_cols=214 Identities=25% Similarity=0.412 Sum_probs=174.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEE-CCEeC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRI-DGKPV 125 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i-~G~~~ 125 (820)
.|+++||+++|+.+. ++++|+|+||+|++||++||+||||||||||+++|+|++. +++|+|++ +|.++
T Consensus 382 ~I~~~nVsf~Y~~~~---------~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~i~~g~~i 450 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRK---------DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD--PTEGDIIINDSHNL 450 (1466)
T ss_pred cEEEEEEEEEcCCCC---------CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc--CCCCeEEEeCCcch
Confidence 599999999996421 2359999999999999999999999999999999999985 46899999 56776
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcC----------CC-----------------------------
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRL----------PP----------------------------- 163 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~----------~~----------------------------- 163 (820)
.. ..+++.+|||+|++.+|+. ||+|||.++..... +.
T Consensus 451 ~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1466)
T PTZ00265 451 KDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTT 529 (1466)
T ss_pred hhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhccccc
Confidence 53 2356779999999999985 99999998631000 00
Q ss_pred CC---------CHHHHHHHHHHHHHHcCCC-------ccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 003437 164 SI---------SRDEKKKRVYELLDQLGLR-------SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTS 227 (820)
Q Consensus 164 ~~---------~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPts 227 (820)
.. ......+.+.++++.+++. +..||.+|+. ...||||||||++|||||+++|+||||||||+
T Consensus 530 ~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpTS 608 (1466)
T PTZ00265 530 DSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEATS 608 (1466)
T ss_pred chhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 00 0001234577777777654 4457777754 56899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 228 GLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 228 gLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
+||+.++..|.+.|+++++ +|+|+|+++|+++. + +.||+|++|++|
T Consensus 609 aLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~-i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 609 SLDNKSEYLVQKTINNLKGNENRITIIIAHRLST-I-RYANTIFVLSNR 655 (1466)
T ss_pred ccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH-H-HhCCEEEEEeCC
Confidence 9999999999999999976 58999999999974 4 689999999987
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=291.53 Aligned_cols=219 Identities=30% Similarity=0.430 Sum_probs=178.9
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
++++|+.+.+.+.. ..++++|+++|++|..|+++.|+|.||||||||+|+|+|.+. +++|+|.++|.+++.
T Consensus 2 i~~~~~~~~f~~g~-------~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk 72 (263)
T COG1101 2 ISLSNATKTFFKGT-------PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTK 72 (263)
T ss_pred cccccceeeecCCC-------hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceeccc
Confidence 55677777765432 235679999999999999999999999999999999999885 568999999999986
Q ss_pred cccc---ceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHHc--CCCccccccccCCCCC
Q 003437 128 SYMK---MVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSISR---DEKKKRVYELLDQL--GLRSATHTYIGNEGRR 197 (820)
Q Consensus 128 ~~~~---~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~ig~~~~~ 197 (820)
.... ..++-|+||+. ..|.||++||+.++..--...+.+. ..+++...+-++.+ ||++..++.+|
T Consensus 73 ~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig----- 147 (263)
T COG1101 73 KSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG----- 147 (263)
T ss_pred CCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----
Confidence 4322 23567899984 6999999999998764311112222 22334444555554 67888888888
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
-|||||||-+++++|.++.|+||+|||-|++|||.++..|++.-.++.+ .+.|.+++||+++. +..+-+|+++|++|+
T Consensus 148 lLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~-Al~yG~RlImLh~G~ 226 (263)
T COG1101 148 LLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMED-ALDYGNRLIMLHSGK 226 (263)
T ss_pred hccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHH-HHhhCCeEEEEeCCe
Confidence 4999999999999999999999999999999999999999999999875 58899999999986 778999999999999
Q ss_pred EEEEc
Q 003437 277 LVYMG 281 (820)
Q Consensus 277 iv~~G 281 (820)
||.+-
T Consensus 227 IvlDv 231 (263)
T COG1101 227 IVLDV 231 (263)
T ss_pred EEEEc
Confidence 99753
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=374.82 Aligned_cols=215 Identities=20% Similarity=0.313 Sum_probs=184.7
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|+.. .+.+|+||||+|++||.+||+|+||||||||+++|.|++. .+|+|++||.++
T Consensus 1216 g~I~f~nVs~~Y~~~----------~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di 1282 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEA----------GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSW 1282 (1490)
T ss_pred CeEEEEEEEEEeCCC----------CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEc
Confidence 469999999999642 2469999999999999999999999999999999999973 479999999998
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEG 195 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~ 195 (820)
.. ...|+.++||||++.+|+. ||+|||.... ..+ ++.+.++++.++|. +.+|+.+++.
T Consensus 1283 ~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~- 1350 (1490)
T TIGR01271 1283 NSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG- 1350 (1490)
T ss_pred ccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCccccccccccC-
Confidence 74 3467889999999999997 9999996431 122 34567777877764 3568888753
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
...||||||||++|||||+++|+|||||||||+||..+...|.+.|++.. +++|||+++|+++. + ..||+|++|++|
T Consensus 1351 G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~t-i-~~~DrIlvL~~G 1427 (1490)
T TIGR01271 1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEA-L-LECQQFLVIEGS 1427 (1490)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECC
Confidence 35799999999999999999999999999999999999999999999875 47999999999974 4 459999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
+|++.|+++++++
T Consensus 1428 ~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1428 SVKQYDSIQKLLN 1440 (1490)
T ss_pred EEEEeCCHHHHHc
Confidence 9999999988863
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=341.77 Aligned_cols=204 Identities=25% Similarity=0.407 Sum_probs=169.5
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ +.+|+|+|++|++||+++|+||||||||||+++|+|+++ +++|+|.+++.
T Consensus 323 ~~l~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 386 (556)
T PRK11819 323 KVIEAENLSKSFGD------------RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET-- 386 (556)
T ss_pred eEEEEEeEEEEECC------------eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 46999999999853 249999999999999999999999999999999999885 46899999542
Q ss_pred CCccccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHH
Q 003437 126 TTSYMKMVSSYVMQDD-QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSGGe 203 (820)
..+||++|+. .+++.+||.||+.+...... .... ...+.++++.+||.+ ..++.++ .|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKVG-----VLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCchh-----hCCHHH
Confidence 1489999996 68888999999988653221 1111 223557899999964 4566665 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC-CeEE-EEc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR-GRLV-YMG 281 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~-G~iv-~~G 281 (820)
||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. | |||++|||+.. +..+||++++|++ |+++ +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~~-~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRWF-LDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHHH-HHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999873 4 89999999984 7889999999986 7776 455
Q ss_pred Cccc
Q 003437 282 SPVA 285 (820)
Q Consensus 282 ~~~~ 285 (820)
+.++
T Consensus 527 ~~~~ 530 (556)
T PRK11819 527 NFQE 530 (556)
T ss_pred CHHH
Confidence 5433
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=341.25 Aligned_cols=198 Identities=27% Similarity=0.373 Sum_probs=171.5
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++|+++.|++ ..|+++|++|++||+++|+||||||||||+|+|+|+++ +++|+|.++
T Consensus 339 ~~l~~~~ls~~~~~-------------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---- 399 (590)
T PRK13409 339 TLVEYPDLTKKLGD-------------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---- 399 (590)
T ss_pred eEEEEcceEEEECC-------------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----
Confidence 46999999998842 15899999999999999999999999999999999985 468999986
Q ss_pred CCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
..++|++|+..+++.+||+|++.+.... ... ...+.++++.+||.+..++.++ .|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~~-----~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNVK-----DLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCcc-----cCCHHHHH
Confidence 1479999998888889999999875321 111 2356889999999887777775 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
||+||++|+.+|++|||||||+|||+.++..+.++|++++++ |.|||++|||+.. +..+|||+++|+ |++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~-~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYM-IDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEc-Ccceeeeec
Confidence 999999999999999999999999999999999999999874 8999999999975 788999999995 588777763
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=340.12 Aligned_cols=202 Identities=24% Similarity=0.415 Sum_probs=168.1
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ +.+|+|+|++|++||+++|+|||||||||||++|+|+++ +++|+|.+++.
T Consensus 321 ~~l~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~-- 384 (552)
T TIGR03719 321 KVIEAENLSKGFGD------------KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET-- 384 (552)
T ss_pred eEEEEeeEEEEECC------------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc--
Confidence 46999999999853 249999999999999999999999999999999999875 46899998542
Q ss_pred CCccccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHH
Q 003437 126 TTSYMKMVSSYVMQDD-QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSGGe 203 (820)
..+||++|+. .+++.+||.|++.++.... ..... ..++.++++.+||.+ ..++.++ .|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKKVG-----QLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCchh-----hCCHHH
Confidence 1589999986 4788899999998864321 11111 224567899999964 4566665 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC-CeEE-EEc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR-GRLV-YMG 281 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~-G~iv-~~G 281 (820)
||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||++|||+.. +..+||++++|++ |+++ +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~~-~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRWF-LDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHHH-HHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999983 389999999975 7889999999987 5776 445
Q ss_pred Cc
Q 003437 282 SP 283 (820)
Q Consensus 282 ~~ 283 (820)
+.
T Consensus 525 ~~ 526 (552)
T TIGR03719 525 NY 526 (552)
T ss_pred CH
Confidence 44
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=309.15 Aligned_cols=200 Identities=26% Similarity=0.389 Sum_probs=165.2
Q ss_pred EEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEE-----------E
Q 003437 52 NLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVR-----------I 120 (820)
Q Consensus 52 nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~-----------i 120 (820)
||+++|+++ +.+|+|+| .+++||+++|+||||||||||||+|+|+++ +++|+|. +
T Consensus 5 ~~~~~y~~~-----------~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~--p~~G~I~~~~~~~~~~~~~ 70 (255)
T cd03236 5 EPVHRYGPN-----------SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK--PNLGKFDDPPDWDEILDEF 70 (255)
T ss_pred CcceeecCc-----------chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEeeccccchhhhhc
Confidence 677887432 24899999 599999999999999999999999999985 4689996 7
Q ss_pred CCEeCCCc--c-cc--ceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 003437 121 DGKPVTTS--Y-MK--MVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195 (820)
Q Consensus 121 ~G~~~~~~--~-~~--~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~ 195 (820)
+|+++... . .+ ..++|++|+..+++. ++.+++.+.. .....++.+.++++.+||++..++.+.
T Consensus 71 ~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~~~~~--- 138 (255)
T cd03236 71 RGSELQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL--------KKKDERGKLDELVDQLELRHVLDRNID--- 138 (255)
T ss_pred cCchhhhhhHHhhhcccceeeecchhccCch-HHHHHHHHHh--------chhHHHHHHHHHHHHcCCchhhcCChh---
Confidence 88876432 1 11 236899999888875 8888887642 122345678899999999887776654
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.||||||||++||++|+.+|+++||||||++||+.++..+.+.|++++++|+|||+++|++.. +..+||++++| +|
T Consensus 139 --~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~-~~~~ad~i~~l-~~ 214 (255)
T cd03236 139 --QLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAV-LDYLSDYIHCL-YG 214 (255)
T ss_pred --hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHHhCCEEEEE-CC
Confidence 699999999999999999999999999999999999999999999998889999999999974 77789999999 56
Q ss_pred eEEEEc
Q 003437 276 RLVYMG 281 (820)
Q Consensus 276 ~iv~~G 281 (820)
++.+.|
T Consensus 215 ~~~~~~ 220 (255)
T cd03236 215 EPGAYG 220 (255)
T ss_pred CCCcce
Confidence 566544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=279.86 Aligned_cols=229 Identities=23% Similarity=0.393 Sum_probs=196.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|.......+ .....+++.|||++++|+.+||+|.||||||||.|+|+|.++ |++|+|++||+++.
T Consensus 4 LLeV~nLsKtF~~~~~lf~---r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~--PTsG~il~n~~~L~ 78 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFR---RQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGEILINDHPLH 78 (267)
T ss_pred hhhhhhhhhhhhhhhhhhh---hhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC--CCCceEEECCcccc
Confidence 4899999999865432211 233458999999999999999999999999999999999986 46899999999985
Q ss_pred Cc---cccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCC
Q 003437 127 TS---YMKMVSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRRGVS 200 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LS 200 (820)
.. ...+++-++|||+. +.|.+.+.+-|..+.++ ...++++.+.+++.+.|+.+||- +.++-++ ..||
T Consensus 79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l--~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~-----~~la 151 (267)
T COG4167 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL--NTDLEPEQRRKQIFETLRMVGLLPDHANYYP-----HMLA 151 (267)
T ss_pred ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhh--cccCChHHHHHHHHHHHHHhccCccccccch-----hhcC
Confidence 32 34567889999985 78889999988887654 44678888999999999999995 4455544 4799
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
-||||||++||||+.+|+++|.||...+||...+-++.++..+|.+ .|.+-|.++.+... +..++|+|+||++|++|+
T Consensus 152 ~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~-iKHi~D~viVM~EG~vvE 230 (267)
T COG4167 152 PGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGM-IKHISDQVLVMHEGEVVE 230 (267)
T ss_pred chhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhH-hhhhcccEEEEecCceee
Confidence 9999999999999999999999999999999999999999999986 59999999999984 889999999999999999
Q ss_pred EcCccchhh
Q 003437 280 MGSPVALPA 288 (820)
Q Consensus 280 ~G~~~~~~~ 288 (820)
.|++.+++.
T Consensus 231 ~G~t~~v~a 239 (267)
T COG4167 231 RGSTADVLA 239 (267)
T ss_pred cCChhhhhc
Confidence 999988754
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=339.43 Aligned_cols=201 Identities=22% Similarity=0.387 Sum_probs=169.4
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|++ +.+|+|+||+|.+||+++|+||||||||||||+|+|+++ +++|+|.+++.
T Consensus 311 ~~l~~~~l~~~y~~------------~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 311 PLLKMEKVSAGYGD------------RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred ceEEEEeeEEEeCC------------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 35999999999953 249999999999999999999999999999999999885 46899999741
Q ss_pred CCccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChH
Q 003437 126 TTSYMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSGG 202 (820)
..+||++|+. .+.+..||.+++.. .. .....+++.++|+.+++.. ..++.++ .||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEETR-----RFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCchh-----hCCHH
Confidence 2589999974 35566788877531 11 1123457889999999963 5677765 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE-EEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV-YMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G 281 (820)
|||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ . .|||++|||+.. +..+||++++|++|+++ +.|
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-gtvi~vSHd~~~-~~~~~d~i~~l~~G~i~~~~g 510 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-GALVVVSHDRHL-LRSTTDDLYLVHDGKVEPFDG 510 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CeEEEEeCCHHH-HHHhCCEEEEEECCEEEEcCC
Confidence 999999999999999999999999999999999999999987 3 499999999975 78899999999999997 788
Q ss_pred Cccch
Q 003437 282 SPVAL 286 (820)
Q Consensus 282 ~~~~~ 286 (820)
+.++.
T Consensus 511 ~~~~~ 515 (638)
T PRK10636 511 DLEDY 515 (638)
T ss_pred CHHHH
Confidence 77654
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=314.76 Aligned_cols=220 Identities=31% Similarity=0.447 Sum_probs=188.4
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...+.|+|++|.|.. .+++|+++|+++.+|+.+|++||||+||||++++|-..+. ..+|.|.+||++
T Consensus 260 ~g~v~F~~V~F~y~~-----------~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD--~~sG~I~id~qd 326 (497)
T COG5265 260 LGAVAFINVSFAYDP-----------RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD--VNSGSITIDGQD 326 (497)
T ss_pred cceEEEEEEEeeccc-----------cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC--CcCceEEEcchh
Confidence 445999999999964 3579999999999999999999999999999999999885 468999999999
Q ss_pred CCC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCCCC
Q 003437 125 VTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKR-----VYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 125 ~~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
+.. ...++.+|.||||..||.+ |...|+.++.. ..+.+|..+. +.+.++ .+++..++.+|+++.
T Consensus 327 ir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~-----~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vgergl 398 (497)
T COG5265 327 IRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRP-----DATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERGL 398 (497)
T ss_pred HHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccCc-----cccHHHHHHHHHHhhhhHHHH--hCchhhhcccchhee
Confidence 853 3567889999999999987 99999998743 2344444332 233333 457889999998776
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
+ |||||||||+|||+++.+|++|++||.||+||..+.+++...|++++ .|+|.+++.|..+. +. -+|.|++|++|+
T Consensus 399 k-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i~-~adeiivl~~g~ 474 (497)
T COG5265 399 K-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-II-DADEIIVLDNGR 474 (497)
T ss_pred e-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-cc-CCceEEEeeCCE
Confidence 4 99999999999999999999999999999999999999999999987 58999999999986 44 389999999999
Q ss_pred EEEEcCccchhhh
Q 003437 277 LVYMGSPVALPAH 289 (820)
Q Consensus 277 iv~~G~~~~~~~~ 289 (820)
|++.|+.++++..
T Consensus 475 i~erg~h~~ll~~ 487 (497)
T COG5265 475 IVERGTHEELLAA 487 (497)
T ss_pred EEecCcHHHHHHc
Confidence 9999999888754
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=337.44 Aligned_cols=199 Identities=25% Similarity=0.429 Sum_probs=167.5
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ +.+|+|+||+|.+|++++|+||||||||||||+|+|+++ +++|+|.+ |.++
T Consensus 318 ~~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~ 382 (635)
T PRK11147 318 IVFEMENVNYQIDG------------KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL 382 (635)
T ss_pred ceEEEeeeEEEECC------------eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc
Confidence 35999999999853 249999999999999999999999999999999999875 46899998 4322
Q ss_pred CCccccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCChHH
Q 003437 126 TTSYMKMVSSYVMQDD-QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSGGe 203 (820)
.+||++|+. .+++.+||.|++.+..... ... ....++.++++.+++. +..++.++ .|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPVK-----ALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChhh-----hCCHHH
Confidence 489999985 5889999999998753211 011 1234678899999996 45677765 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe-CCeEEEE
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA-RGRLVYM 280 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~-~G~iv~~ 280 (820)
||||+||++|+.+|++|||||||+|||+.+...+.++|+++ +.|||++|||... +..+||++++|+ +|+++.+
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~~-~~~~~d~i~~l~~~g~i~~~ 519 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQF-VDNTVTECWIFEGNGKIGRY 519 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHHH-HHHhcCEEEEEeCCCeEEEc
Confidence 99999999999999999999999999999999999999876 4599999999875 788999999998 7988653
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=285.99 Aligned_cols=226 Identities=24% Similarity=0.338 Sum_probs=194.1
Q ss_pred eEEEEEEEEEECccccc------------ccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCC
Q 003437 47 GLEFKNLSYSIMKKQKK------------DGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSL 114 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~------------~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~ 114 (820)
.|+++||++.|.....+ .+........+|+||||++++||.++|+|+||||||||||+|+|.++ |+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~--Pt 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK--PT 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC--CC
Confidence 48899999988643100 01112345679999999999999999999999999999999999986 46
Q ss_pred ceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 003437 115 EGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNE 194 (820)
Q Consensus 115 ~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~ 194 (820)
+|+|.++|+-..... - .--+.|.+|.+||+.+-..+. ++++++.+++++++++.-+|.+..|.++.
T Consensus 81 ~G~v~v~G~v~~li~--l-------g~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pvk-- 146 (249)
T COG1134 81 SGKVKVTGKVAPLIE--L-------GAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPVK-- 146 (249)
T ss_pred CceEEEcceEehhhh--c-------ccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCchh--
Confidence 899999997432111 1 123456799999999987764 57899999999999999999999998885
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
.+|-||+-|+++|.+...+|++||+||-.+-.|+.-++...+.++++.++++|||+++|+++. +.++||++++|++
T Consensus 147 ---tYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~-I~~~Cd~~i~l~~ 222 (249)
T COG1134 147 ---TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGA-IKQYCDRAIWLEH 222 (249)
T ss_pred ---hccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHH-HHHhcCeeEEEeC
Confidence 699999999999999999999999999999999999999999999998888999999999985 9999999999999
Q ss_pred CeEEEEcCccchhhhhhc
Q 003437 275 GRLVYMGSPVALPAHLAG 292 (820)
Q Consensus 275 G~iv~~G~~~~~~~~f~~ 292 (820)
|++.+.|+++++.+++..
T Consensus 223 G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 223 GQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred CEEEEcCCHHHHHHHHHH
Confidence 999999999999887654
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=273.71 Aligned_cols=144 Identities=34% Similarity=0.539 Sum_probs=131.4
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++|+++.|.+ ..+|+++|+++++||+++|+||||||||||+++|+|+++ +.+|+|.++|+
T Consensus 1 l~~~~l~~~~~~------------~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~~~---- 62 (144)
T cd03221 1 IELENLSKTYGG------------KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTWGST---- 62 (144)
T ss_pred CEEEEEEEEECC------------ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCe----
Confidence 478999998853 249999999999999999999999999999999999885 46899999984
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRV 207 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv 207 (820)
+.++|++| ||+||+||+
T Consensus 63 ----~~i~~~~~-----------------------------------------------------------lS~G~~~rv 79 (144)
T cd03221 63 ----VKIGYFEQ-----------------------------------------------------------LSGGEKMRL 79 (144)
T ss_pred ----EEEEEEcc-----------------------------------------------------------CCHHHHHHH
Confidence 35789998 999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 208 ~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
+|||+|+.+|+++++||||+|||+.++..+.+.|+++ +.|+|+++|+++. +..+||++++|++|+
T Consensus 80 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~-~~~~~d~v~~l~~g~ 144 (144)
T cd03221 80 ALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRYF-LDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHH-HHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999999987 4799999999974 778899999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=334.23 Aligned_cols=207 Identities=24% Similarity=0.376 Sum_probs=164.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+||||+|.+|++++|+||||||||||||+|+|.+. +++|+|.++|..
T Consensus 2 i~i~nls~~~g~------------~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~--pd~G~I~~~~~~--- 64 (638)
T PRK10636 2 IVFSSLQIRRGV------------RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS--ADGGSYTFPGNW--- 64 (638)
T ss_pred EEEEEEEEEeCC------------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCCC---
Confidence 889999999954 349999999999999999999999999999999999875 468999998742
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHH-----------------------HhcC-CCCCCHHHHHHHHHHHHHHcCC
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAA-----------------------EVRL-PPSISRDEKKKRVYELLDQLGL 183 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~-----------------------~~~~-~~~~~~~~~~~~v~~~l~~lgL 183 (820)
.++|++|+...+. .|+.+.+.-.. .+.. .......+...++.++++.+||
T Consensus 65 -----~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl 138 (638)
T PRK10636 65 -----QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGF 138 (638)
T ss_pred -----EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Confidence 3688888643332 35555432110 0000 0000111234578899999999
Q ss_pred C-ccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHH
Q 003437 184 R-SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRI 262 (820)
Q Consensus 184 ~-~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 262 (820)
. +..++.++ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||... +
T Consensus 139 ~~~~~~~~~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~~-l 209 (638)
T PRK10636 139 SNEQLERPVS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRDF-L 209 (638)
T ss_pred CchhhcCchh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHHH-H
Confidence 7 46677776 59999999999999999999999999999999999999999998876 5699999999975 7
Q ss_pred HhhcCEEEEEeCCeEE-EEcCccch
Q 003437 263 QMLLDRIIVLARGRLV-YMGSPVAL 286 (820)
Q Consensus 263 ~~~~D~v~lL~~G~iv-~~G~~~~~ 286 (820)
..+||++++|++|+++ |.|+.+..
T Consensus 210 ~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 210 DPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred HHhcCEEEEEeCCEEEEecCCHHHH
Confidence 8899999999999996 56765543
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=332.98 Aligned_cols=206 Identities=21% Similarity=0.340 Sum_probs=166.2
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||++.|+++ +.+|+|+||+|++||+++|+||||||||||||+|+|+++ +++|+|.+++
T Consensus 507 ~~L~~~~ls~~y~~~-----------~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~--- 570 (718)
T PLN03073 507 PIISFSDASFGYPGG-----------PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSA--- 570 (718)
T ss_pred ceEEEEeeEEEeCCC-----------CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECC---
Confidence 469999999999531 248999999999999999999999999999999999885 4679999865
Q ss_pred CCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHH
Q 003437 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSGGer 204 (820)
+..+||++|+. .+.+++.++..+......+ ... .+++.++|+.+||.+ ..++.++ .||||||
T Consensus 571 -----~~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~~-----~LSgGqk 633 (718)
T PLN03073 571 -----KVRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPMY-----TLSGGQK 633 (718)
T ss_pred -----ceeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCcc-----ccCHHHH
Confidence 23589999985 3445666664432211111 111 356788999999974 4565554 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE-EEcCc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV-YMGSP 283 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~ 283 (820)
|||+||++|+.+|++|||||||+|||+.+...+++.|++. . .|||++|||+.. +..+||++++|++|+++ +.|+.
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~~-i~~~~drv~~l~~G~i~~~~g~~ 709 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEHL-ISGSVDELWVVSEGKVTPFHGTF 709 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHHH-HHHhCCEEEEEECCEEEEeCCCH
Confidence 9999999999999999999999999999999998888765 3 499999999985 78899999999999998 77776
Q ss_pred cchhh
Q 003437 284 VALPA 288 (820)
Q Consensus 284 ~~~~~ 288 (820)
++..+
T Consensus 710 ~~~~~ 714 (718)
T PLN03073 710 HDYKK 714 (718)
T ss_pred HHHHH
Confidence 65433
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=347.14 Aligned_cols=226 Identities=28% Similarity=0.451 Sum_probs=206.1
Q ss_pred CCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE
Q 003437 44 PGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK 123 (820)
Q Consensus 44 ~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~ 123 (820)
....+..+|+++.|+.+. + +++++|+.+++||+.+++|+|||||||++|+|.|..+ +++|+++++|.
T Consensus 561 ~~~~~~~~~L~k~y~~~~----------~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~--~t~G~a~i~g~ 627 (885)
T KOG0059|consen 561 YSSALVLNNLSKVYGGKD----------G-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK--PTSGEALIKGH 627 (885)
T ss_pred ccceEEEcceeeeecchh----------h-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc--CCcceEEEecC
Confidence 346799999999996532 1 8999999999999999999999999999999999875 56899999999
Q ss_pred eCCCc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 124 PVTTS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 124 ~~~~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
++... ..++.+||+||+|.+++.+|.+|+|.+.++++ ++++.+.++.++.+++.+||.+.+|+.++ .+
T Consensus 628 ~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~y 699 (885)
T KOG0059|consen 628 DITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVR-----TY 699 (885)
T ss_pred ccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchh-----hC
Confidence 98642 25677999999999999999999999999987 56777788889999999999999999986 59
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
|||+|||+++|.||+.+|++++|||||+|+||.+++.+.++++++.+.|+.||+|||.++ +...+|||+.+|.+|++..
T Consensus 700 SgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~G~l~c 778 (885)
T KOG0059|consen 700 SGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVIGQLRC 778 (885)
T ss_pred CCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeecCeeEE
Confidence 999999999999999999999999999999999999999999999998889999999997 5899999999999999999
Q ss_pred EcCccchhhhhh
Q 003437 280 MGSPVALPAHLA 291 (820)
Q Consensus 280 ~G~~~~~~~~f~ 291 (820)
.|+++++...|.
T Consensus 779 iGs~q~LKsrfG 790 (885)
T KOG0059|consen 779 IGSPQELKSRYG 790 (885)
T ss_pred ecChHHHHhhcC
Confidence 999999987764
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=280.71 Aligned_cols=155 Identities=27% Similarity=0.445 Sum_probs=134.5
Q ss_pred EEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccc
Q 003437 51 KNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYM 130 (820)
Q Consensus 51 ~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~ 130 (820)
.||+++|++ +.+++++ +++++||+++|+||||||||||+|+|+|+++ +++|+|.++|.+
T Consensus 4 ~~l~~~~~~------------~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~------ 62 (177)
T cd03222 4 PDCVKRYGV------------FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEWDGIT------ 62 (177)
T ss_pred CCeEEEECC------------EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEECCEE------
Confidence 578888853 2478885 8999999999999999999999999999985 468999999863
Q ss_pred cceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHH
Q 003437 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIG 210 (820)
Q Consensus 131 ~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia 210 (820)
++|++|+.. ||||||||++||
T Consensus 63 ---i~~~~q~~~--------------------------------------------------------LSgGq~qrv~la 83 (177)
T cd03222 63 ---PVYKPQYID--------------------------------------------------------LSGGELQRVAIA 83 (177)
T ss_pred ---EEEEcccCC--------------------------------------------------------CCHHHHHHHHHH
Confidence 678887432 999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE--cCccch
Q 003437 211 IDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTG-SIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM--GSPVAL 286 (820)
Q Consensus 211 ~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~--G~~~~~ 286 (820)
|+|+.+|++++|||||+|||+.++..+.+.|+++++++ .|||+++|++.. +..+||++++|+++-.++. |.|...
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~-~~~~~d~i~~l~~~~~~~~~~~~~~~~ 161 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAV-LDYLSDRIHVFEGEPGVYGIASQPKGT 161 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHH-HHHhCCEEEEEcCCCccceeccCCcch
Confidence 99999999999999999999999999999999998765 999999999974 7778999999998766654 655433
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=359.70 Aligned_cols=207 Identities=28% Similarity=0.448 Sum_probs=171.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.++++|++++|+.+ .++++|+|+|+++++||.++|+||||||||||+++|.|.+++ .+|.+.
T Consensus 614 ~I~~~~vsF~y~~~---------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~--~~G~i~------- 675 (1495)
T PLN03232 614 AISIKNGYFSWDSK---------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH--AETSSV------- 675 (1495)
T ss_pred cEEEEeeEEEcCCC---------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc--cCCCEE-------
Confidence 59999999999642 124599999999999999999999999999999999998853 567653
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCCCCC
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEGRRGV 199 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~L 199 (820)
..++.++||+|++.+++. ||+|||.|+.. .++ ++++++++..+| ++..+|.+|+.+. .|
T Consensus 676 --~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~------~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~-~L 741 (1495)
T PLN03232 676 --VIRGSVAYVPQVSWIFNA-TVRENILFGSD------FES----ERYWRAIDVTALQHDLDLLPGRDLTEIGERGV-NI 741 (1495)
T ss_pred --EecCcEEEEcCccccccc-cHHHHhhcCCc------cCH----HHHHHHHHHhCCHHHHHhCCCCCCceecCCCc-cc
Confidence 245678999999999986 99999998742 222 334445554444 4556889987654 69
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK-VKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||++||||+.++|+|+|||||||+||+.++.++++. ++.+ .+++|+|++||+++. ...||+|++|++|+++
T Consensus 742 SGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~~--l~~aD~Ii~L~~G~i~ 818 (1495)
T PLN03232 742 SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLHF--LPLMDRIILVSEGMIK 818 (1495)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChhh--HHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999775 4443 368999999999974 4679999999999999
Q ss_pred EEcCccchhh
Q 003437 279 YMGSPVALPA 288 (820)
Q Consensus 279 ~~G~~~~~~~ 288 (820)
+.|+.+++..
T Consensus 819 ~~Gt~~eL~~ 828 (1495)
T PLN03232 819 EEGTFAELSK 828 (1495)
T ss_pred EecCHHHHHh
Confidence 9999988764
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=278.28 Aligned_cols=156 Identities=23% Similarity=0.348 Sum_probs=131.9
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
+.+|+|+||++++|++++|+||||||||||||+|.+ .+|+|.++|... ...++.++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~--~~~~~~~~~~~q------------ 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLP--KFSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCccc--ccccccEEEEhH------------
Confidence 469999999999999999999999999999999864 369999988732 122334678776
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHhcC--CCEEEEeCCCCC
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDIIHK--PSLLFLDEPTSG 228 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~~~--P~lLllDEPtsg 228 (820)
.++++.++|... .++.+ +.||||||||++||++|+.+ |++|||||||+|
T Consensus 68 -----------------------~~~l~~~~L~~~~~~~~~-----~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~ 119 (176)
T cd03238 68 -----------------------LQFLIDVGLGYLTLGQKL-----STLSGGELQRVKLASELFSEPPGTLFILDEPSTG 119 (176)
T ss_pred -----------------------HHHHHHcCCCccccCCCc-----CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCccc
Confidence 235677888653 55554 47999999999999999999 999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 229 LDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 229 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
||+.++..+.+.|+++++.|+|||++||+++. + +.||++++|.+|+.
T Consensus 120 LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~-~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 120 LHQQDINQLLEVIKGLIDLGNTVILIEHNLDV-L-SSADWIIDFGPGSG 166 (176)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEECCCCC
Confidence 99999999999999998789999999999974 4 57999999976543
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=263.26 Aligned_cols=193 Identities=28% Similarity=0.409 Sum_probs=167.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceEEEECCEeC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-SLEGSVRIDGKPV 125 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-~~~G~I~i~G~~~ 125 (820)
.+.++||+...++ .-+|-++|++|.+||++.||||||||||||+..+.|.+.+. ..+|++++|++++
T Consensus 2 ~l~l~nvsl~l~g------------~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l 69 (213)
T COG4136 2 MLCLKNVSLRLPG------------SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL 69 (213)
T ss_pred ceeeeeeeecCCC------------ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeec
Confidence 4788999976543 34899999999999999999999999999999999988653 4689999999998
Q ss_pred CCc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 126 TTS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 126 ~~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
+.. ..++.+|.++||+.+||+++|.+||.|+.. ..+.-+.++..++..|++.||....+... .+||||||
T Consensus 70 ~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp----~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----~tlSGGQr 140 (213)
T COG4136 70 DMLPAAQRQIGILFQDALLFPHLSVGQNLLFALP----ATLKGNARRNAANAALERSGLDGAFHQDP-----ATLSGGQR 140 (213)
T ss_pred cccchhhhheeeeecccccccccccccceEEecC----cccccHHHHhhHHHHHHHhccchhhhcCh-----hhcCcchH
Confidence 753 356789999999999999999999998753 33444566778899999999998877654 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEEcCccH
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI-ARTGSIVLMTIHQPSY 260 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l-~~~g~tvi~~~H~~~~ 260 (820)
-||++-|+|+..|+.++||||+|.||..-+.++.+..-.- ...|..+|.+|||...
T Consensus 141 ARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~D 197 (213)
T COG4136 141 ARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQD 197 (213)
T ss_pred HHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc
Confidence 9999999999999999999999999999999999987654 4569999999999764
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=333.08 Aligned_cols=199 Identities=21% Similarity=0.287 Sum_probs=162.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.|+++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.+++
T Consensus 451 ~i~~~nv~~~~~~~-----------~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~--~~~G~i~~~~---- 513 (659)
T TIGR00954 451 GIKFENIPLVTPNG-----------DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP--VYGGRLTKPA---- 513 (659)
T ss_pred eEEEEeeEEECCCC-----------CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEeecC----
Confidence 59999999988531 249999999999999999999999999999999999875 4579998764
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc----CCCCCCCChH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG----NEGRRGVSGG 202 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig----~~~~~~LSGG 202 (820)
++.++||+|++.+++. |++||+.++....... .+...++++.++++.+||.+..++..| ......||||
T Consensus 514 ----~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgG 586 (659)
T TIGR00954 514 ----KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGG 586 (659)
T ss_pred ----CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhh--ccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHH
Confidence 4568999999998887 9999998764321000 001123467889999999876554321 0123579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
||||++|||+|+++|++|||||||+|||+.+...+.+.|++ .|+|+|+++|+++. .+.||++++|+.
T Consensus 587 qkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~--~~~~d~il~l~~ 653 (659)
T TIGR00954 587 EKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSL--WKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHH--HHhCCEEEEEeC
Confidence 99999999999999999999999999999999999998876 38999999999974 467999999964
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=358.82 Aligned_cols=206 Identities=27% Similarity=0.425 Sum_probs=172.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCc-eEEEECCEeC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE-GSVRIDGKPV 125 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~-G~I~i~G~~~ 125 (820)
.|+++|++++|+.. .++.+|+|+|++|++||+++|+||||||||||+++|.|.++ +.+ |+|.+
T Consensus 614 ~I~~~nvsf~y~~~---------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~GG~I~l----- 677 (1622)
T PLN03130 614 AISIKNGYFSWDSK---------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP--PRSDASVVI----- 677 (1622)
T ss_pred ceEEEeeEEEccCC---------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc--cCCCceEEE-----
Confidence 59999999999642 12458999999999999999999999999999999999885 467 89974
Q ss_pred CCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCCCC
Q 003437 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEGRRG 198 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~ 198 (820)
+..++||+|++.+++. ||+|||.|+.. .+ +++++++++..+| ++..+|.+|+.+ ..
T Consensus 678 -----~~~Iayv~Q~p~Lfng-TIreNI~fg~~------~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G-~~ 740 (1622)
T PLN03130 678 -----RGTVAYVPQVSWIFNA-TVRDNILFGSP------FD----PERYERAIDVTALQHDLDLLPGGDLTEIGERG-VN 740 (1622)
T ss_pred -----cCeEEEEcCccccCCC-CHHHHHhCCCc------cc----HHHHHHHHHHhCcHHHHHhCCCcccccccCCC-CC
Confidence 4568999999999986 99999998742 12 2345555555554 345688898765 46
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVE-KVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||||||||+||||+..+|+|+|||||||+||+.+...+++ .++.+. +|+|+|++||+++. ...+|+|++|++|++
T Consensus 741 LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~--l~~aD~Ii~L~~G~i 817 (1622)
T PLN03130 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHF--LSQVDRIILVHEGMI 817 (1622)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHhH--HHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999998875 455553 58999999999963 567999999999999
Q ss_pred EEEcCccchhh
Q 003437 278 VYMGSPVALPA 288 (820)
Q Consensus 278 v~~G~~~~~~~ 288 (820)
++.|+.+++..
T Consensus 818 ~e~Gt~~eL~~ 828 (1622)
T PLN03130 818 KEEGTYEELSN 828 (1622)
T ss_pred EEeCCHHHHHh
Confidence 99999988753
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=327.95 Aligned_cols=207 Identities=26% Similarity=0.367 Sum_probs=161.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+||||+|++|++++|+||||||||||||+|+|++. +++|+|.++|..
T Consensus 3 ~l~i~~ls~~~~~------------~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~--p~~G~I~~~~~~-- 66 (635)
T PRK11147 3 LISIHGAWLSFSD------------APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL--LDDGRIIYEQDL-- 66 (635)
T ss_pred EEEEeeEEEEeCC------------ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEeCCCC--
Confidence 4999999999953 249999999999999999999999999999999999875 468999998631
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHH------------------------------HHHhcCC-CCCCHHHHHHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMF------------------------------AAEVRLP-PSISRDEKKKRVY 175 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~------------------------------~~~~~~~-~~~~~~~~~~~v~ 175 (820)
.++|++|++......+|.+++.. ...+... ......+...++.
T Consensus 67 ------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 140 (635)
T PRK11147 67 ------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRIN 140 (635)
T ss_pred ------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 24677775433223455554321 1100000 0000112345788
Q ss_pred HHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEE
Q 003437 176 ELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTI 255 (820)
Q Consensus 176 ~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~ 255 (820)
++++.+||.. ++.++ .|||||||||+||++|+.+|+||||||||++||+.+...+.+.|+++. .|||++|
T Consensus 141 ~~l~~lgl~~--~~~~~-----~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivs 210 (635)
T PRK11147 141 EVLAQLGLDP--DAALS-----SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFIS 210 (635)
T ss_pred HHHHhCCCCC--CCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEe
Confidence 9999999963 55554 699999999999999999999999999999999999999999999873 5999999
Q ss_pred cCccHHHHhhcCEEEEEeCCeEE-EEcCccch
Q 003437 256 HQPSYRIQMLLDRIIVLARGRLV-YMGSPVAL 286 (820)
Q Consensus 256 H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~ 286 (820)
||... +..+||+|++|++|+++ +.|+.++.
T Consensus 211 Hd~~~-l~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 211 HDRSF-IRNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred CCHHH-HHHhcCeEEEEECCEEEEecCCHHHH
Confidence 99975 78899999999999997 55776544
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=263.75 Aligned_cols=219 Identities=25% Similarity=0.394 Sum_probs=172.3
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
.+.|++++||+.|... .-.+||||.+.|||+++|+|+|||||||||++|++++.| +.|+|.+.-.+
T Consensus 4 ~PLL~V~~lsk~Yg~~------------~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p--~~G~v~Y~~r~ 69 (258)
T COG4107 4 KPLLSVSGLSKLYGPG------------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTP--DAGTVTYRMRD 69 (258)
T ss_pred CcceeehhhhhhhCCC------------cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCC--CCCeEEEEcCC
Confidence 3469999999999653 368999999999999999999999999999999999864 67999987533
Q ss_pred ---CC-----Ccc----ccceEEEEccCCC--CCC----CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 003437 125 ---VT-----TSY----MKMVSSYVMQDDQ--LFP----MLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA 186 (820)
Q Consensus 125 ---~~-----~~~----~~~~~gyv~Q~~~--l~~----~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 186 (820)
.+ +.. .+..=|+|.|++. +-. .-.+.|-++-... | .-...++.+.++|+++.++..
T Consensus 70 ~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~-R-----HYG~iR~~a~~WL~~VEI~~~ 143 (258)
T COG4107 70 GQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA-R-----HYGNIRAEAQDWLEEVEIDLD 143 (258)
T ss_pred CCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhh-h-----hhhhHHHHHHHHHHhcccCcc
Confidence 21 111 1122389999874 322 2234444432211 1 112345677889999988643
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhh
Q 003437 187 THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQML 265 (820)
Q Consensus 187 ~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~ 265 (820)
+ + ++.|+..|||++||+.|||-|++.|+++|+||||.|||..-+.+++++++.|..+ |.+++++|||..- +.-+
T Consensus 144 R---i-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V-arLl 218 (258)
T COG4107 144 R---I-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLL 218 (258)
T ss_pred c---c-cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH-HHHh
Confidence 2 3 4567899999999999999999999999999999999999999999999999865 9999999999863 5667
Q ss_pred cCEEEEEeCCeEEEEcCccchhh
Q 003437 266 LDRIIVLARGRLVYMGSPVALPA 288 (820)
Q Consensus 266 ~D~v~lL~~G~iv~~G~~~~~~~ 288 (820)
+||+++|++|++++.|-++.+++
T Consensus 219 a~rlmvmk~g~vve~GLTDrvLD 241 (258)
T COG4107 219 ADRLMVMKQGQVVESGLTDRVLD 241 (258)
T ss_pred hhcceeecCCCEecccccccccc
Confidence 99999999999999998877653
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=266.71 Aligned_cols=153 Identities=39% Similarity=0.664 Sum_probs=136.9
Q ss_pred EEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-
Q 003437 50 FKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS- 128 (820)
Q Consensus 50 ~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~- 128 (820)
++|+++.|.+ +.+|+++|+++++|++++|+|+||||||||+++|+|++. +.+|+|+++|.++...
T Consensus 2 ~~~~~~~~~~------------~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~~ 67 (157)
T cd00267 2 IENLSFRYGG------------RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLP 67 (157)
T ss_pred eEEEEEEeCC------------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccCC
Confidence 6789988853 249999999999999999999999999999999999885 4689999999987531
Q ss_pred --cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 129 --YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 129 --~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
..++.++|++| |||||+||
T Consensus 68 ~~~~~~~i~~~~q-----------------------------------------------------------lS~G~~~r 88 (157)
T cd00267 68 LEELRRRIGYVPQ-----------------------------------------------------------LSGGQRQR 88 (157)
T ss_pred HHHHHhceEEEee-----------------------------------------------------------CCHHHHHH
Confidence 23456788888 99999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
++||++|+.+|++++|||||+|||..++..+.+.|+++.+.++|+|+++|+++. +..+||++++|++|+
T Consensus 89 ~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~~~~~d~i~~l~~g~ 157 (157)
T cd00267 89 VALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPEL-AELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEeCcC
Confidence 999999999999999999999999999999999999998778999999999985 777899999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-32 Score=266.46 Aligned_cols=188 Identities=31% Similarity=0.429 Sum_probs=164.5
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
++.+||+.+-+ +..++.++||++.+||++-|.||||||||||||+|+|+.. |.+|+|.++|.+++.
T Consensus 3 L~a~~L~~~R~------------e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~--p~~G~v~~~~~~i~~ 68 (209)
T COG4133 3 LEAENLSCERG------------ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR--PDAGEVYWQGEPIQN 68 (209)
T ss_pred chhhhhhhccC------------cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC--CCCCeEEecCCCCcc
Confidence 66778877632 3469999999999999999999999999999999999986 468999999998864
Q ss_pred cc--ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 128 SY--MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 ~~--~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. .++.+-|+-..+-+=+.+||.|||.|...+... ...+.+.+.++.+||....|.+++ .||-||||
T Consensus 69 ~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqR 137 (209)
T COG4133 69 VRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVG-----QLSAGQQR 137 (209)
T ss_pred chhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchh-----hcchhHHH
Confidence 31 345567888888888999999999999876532 123568899999999999999987 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
||+|||-+++.+++.|||||+++||......+-.++..-+.+|..||.+||||..
T Consensus 138 RvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 138 RVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 9999999999999999999999999999999999999999999999999999865
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.98 E-value=6e-32 Score=347.88 Aligned_cols=209 Identities=26% Similarity=0.434 Sum_probs=170.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|++++|+.. .+.+|+|+|+++++||+++|+||||||||||+++|+|.++ +.+|+|.++|
T Consensus 636 ~i~~~~~~~~~~~~----------~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~--~~~G~i~~~g---- 699 (1522)
T TIGR00957 636 SITVHNATFTWARD----------LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVHMKG---- 699 (1522)
T ss_pred cEEEEEeEEEcCCC----------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--cCCcEEEECC----
Confidence 59999999999632 2359999999999999999999999999999999999885 4689999987
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH---HHHHcCC-CccccccccCCCCCCCChH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYE---LLDQLGL-RSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~---~l~~lgL-~~~~~~~ig~~~~~~LSGG 202 (820)
.++||+|++.+++ .||+||+.|+.. .++++. +++.+ +.+.+++ ++..++.+|+. ...||||
T Consensus 700 ------~i~yv~Q~~~l~~-~Ti~eNI~~g~~------~~~~~~-~~~~~~~~l~~~l~~~~~g~~t~ig~~-g~~LSGG 764 (1522)
T TIGR00957 700 ------SVAYVPQQAWIQN-DSLRENILFGKA------LNEKYY-QQVLEACALLPDLEILPSGDRTEIGEK-GVNLSGG 764 (1522)
T ss_pred ------EEEEEcCCccccC-CcHHHHhhcCCc------cCHHHH-HHHHHHhCCHHHHHhcCCCCCceecCC-CCCCCHH
Confidence 3899999998876 599999998632 122222 22222 2233333 33456777754 4679999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA--RTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~--~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
||||++|||||+.+|++++||||||+||+.++..+++.+.+.. .+++|+|++||+++. + ..||+|++|++|++++.
T Consensus 765 QkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~-l-~~~D~ii~l~~G~i~~~ 842 (1522)
T TIGR00957 765 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY-L-PQVDVIIVMSGGKISEM 842 (1522)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh-h-hhCCEEEEecCCeEEee
Confidence 9999999999999999999999999999999999999997642 358999999999974 4 45999999999999999
Q ss_pred cCccchhh
Q 003437 281 GSPVALPA 288 (820)
Q Consensus 281 G~~~~~~~ 288 (820)
|+.+++..
T Consensus 843 g~~~~l~~ 850 (1522)
T TIGR00957 843 GSYQELLQ 850 (1522)
T ss_pred CCHHHHHh
Confidence 99888753
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-32 Score=321.14 Aligned_cols=181 Identities=25% Similarity=0.413 Sum_probs=152.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEE-----------ECCEeCCCc-----cccceEEE
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVR-----------IDGKPVTTS-----YMKMVSSY 136 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~-----------i~G~~~~~~-----~~~~~~gy 136 (820)
.+|++++ .+++||+++|+||||||||||||+|+|++. +++|+|. ++|.++... ..+..+++
T Consensus 88 ~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~--p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 164 (590)
T PRK13409 88 FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI--PNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVH 164 (590)
T ss_pred eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceee
Confidence 4899999 999999999999999999999999999885 4579997 999887431 11123455
Q ss_pred EccCCCCCCC---CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHH
Q 003437 137 VMQDDQLFPM---LTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDI 213 (820)
Q Consensus 137 v~Q~~~l~~~---lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL 213 (820)
.+|.....|. .||+|++... +..++++++++.+||.+..|+.++ +|||||||||+||++|
T Consensus 165 ~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ia~al 227 (590)
T PRK13409 165 KPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----ELSGGELQRVAIAAAL 227 (590)
T ss_pred cccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHH
Confidence 5554333332 2999998631 123578899999999988888876 6999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 214 IHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 214 ~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|+++. +..++|++++|+++
T Consensus 228 ~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~-l~~~~D~v~vl~~~ 287 (590)
T PRK13409 228 LRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAV-LDYLADNVHIAYGE 287 (590)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH-HHHhCCEEEEEeCC
Confidence 999999999999999999999999999999988 9999999999985 78899999999864
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=340.73 Aligned_cols=192 Identities=22% Similarity=0.391 Sum_probs=157.1
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
+.+|+|+|++|++||+++|+|||||||||||++|+|+.+ +.+|+|.++| .++||+|++.+++. ||+|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~--~~~G~i~~~g----------~iayv~Q~~~l~~~-Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE--PSEGKIKHSG----------RISFSPQTSWIMPG-TIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECC----------EEEEEeCCCccCCc-cHHH
Confidence 469999999999999999999999999999999999885 4689999988 38999999999986 9999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCC
Q 003437 152 TFMFAAEVRLPPSISRDEKKKR-----VYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPT 226 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPt 226 (820)
|+.|+... +.+..++. .++.++.+ .+..+|.+|+. ...|||||||||+|||||+.+|+++||||||
T Consensus 506 NI~~g~~~------~~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep~ 576 (1490)
T TIGR01271 506 NIIFGLSY------DEYRYTSVIKACQLEEDIALF--PEKDKTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSPF 576 (1490)
T ss_pred HHHhcccc------chHHHHHHHHHHhHHHHHHhc--cccccccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 99987421 11111111 11222222 22345667754 4679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH-HHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhh
Q 003437 227 SGLDSTSAYSVVEK-VKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPA 288 (820)
Q Consensus 227 sgLD~~~~~~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 288 (820)
+|||+.++..+++. ++++. +|+|+|++||++.. + ..||+|++|++|+++..|+.+++..
T Consensus 577 saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~-~-~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 577 THLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEH-L-KKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred ccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHH-H-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999985 66664 48999999999975 4 4599999999999999999887753
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=318.20 Aligned_cols=219 Identities=21% Similarity=0.238 Sum_probs=157.8
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCceEEEECCEe
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ-GSLEGSVRIDGKP 124 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~-~~~~G~I~i~G~~ 124 (820)
..|+++||+++|++ +.+|+|+||+|.+|+++||+||||||||||||+|+|+... .+.+|+|.+.++.
T Consensus 176 ~~I~i~nls~~y~~------------~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~ 243 (718)
T PLN03073 176 KDIHMENFSISVGG------------RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQE 243 (718)
T ss_pred eeEEEceEEEEeCC------------CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEecc
Confidence 45999999999953 2499999999999999999999999999999999996421 2456888765543
Q ss_pred CCCcc-----------------ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC---------------CCCHHHHHH
Q 003437 125 VTTSY-----------------MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP---------------SISRDEKKK 172 (820)
Q Consensus 125 ~~~~~-----------------~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~---------------~~~~~~~~~ 172 (820)
+.... .++.++|++|++.+... ++.++.........+. ........+
T Consensus 244 ~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 322 (718)
T PLN03073 244 VVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEA 322 (718)
T ss_pred CCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHH
Confidence 21100 11224566665432211 1111110000000000 000112345
Q ss_pred HHHHHHHHcCCC-ccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE
Q 003437 173 RVYELLDQLGLR-SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIV 251 (820)
Q Consensus 173 ~v~~~l~~lgL~-~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tv 251 (820)
++.++|+.+||. +..++.++ .|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.||
T Consensus 323 r~~~~L~~lgl~~~~~~~~~~-----~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tv 394 (718)
T PLN03073 323 RAASILAGLSFTPEMQVKATK-----TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTF 394 (718)
T ss_pred HHHHHHHHCCCChHHHhCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEE
Confidence 677788888885 34556554 69999999999999999999999999999999999999999999887 6899
Q ss_pred EEEEcCccHHHHhhcCEEEEEeCCeEE-EEcCccch
Q 003437 252 LMTIHQPSYRIQMLLDRIIVLARGRLV-YMGSPVAL 286 (820)
Q Consensus 252 i~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~ 286 (820)
|+++|+... +..+||++++|++|+++ +.|+.++.
T Consensus 395 iivsHd~~~-l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 395 IVVSHAREF-LNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred EEEECCHHH-HHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999875 78889999999999996 67765543
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-31 Score=301.12 Aligned_cols=206 Identities=30% Similarity=0.422 Sum_probs=169.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+. +.+|+|+|+++.+|+.+||||+||||||||||+|+|... +++|+|...+
T Consensus 3 ~i~~~~ls~~~g~------------~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~--~~~G~i~~~~---- 64 (530)
T COG0488 3 MITLENLSLAYGD------------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE--PDSGEVTRPK---- 64 (530)
T ss_pred eEEEeeeEEeeCC------------ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc--CCCCeEeecC----
Confidence 5999999999954 359999999999999999999999999999999999875 4679998753
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhc-------------CCCC--------------CCHHHHHHHHHHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVR-------------LPPS--------------ISRDEKKKRVYELLD 179 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~-------------~~~~--------------~~~~~~~~~v~~~l~ 179 (820)
...++|++|++.+.+..||.+.+.-+..-. .+.. +..-+.+.++..++.
T Consensus 65 ----~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~ 140 (530)
T COG0488 65 ----GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALL 140 (530)
T ss_pred ----CceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHh
Confidence 135799999999999999999887653210 0000 000112357788899
Q ss_pred HcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCcc
Q 003437 180 QLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259 (820)
Q Consensus 180 ~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 259 (820)
.+|+.+. ++.++ .||||||.||+||++|+.+|++|||||||++||..+..-+-+.|++. .| |+|+||||-.
T Consensus 141 gLg~~~~-~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~ 211 (530)
T COG0488 141 GLGFPDE-DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRY 211 (530)
T ss_pred cCCCCcc-cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHH
Confidence 9999877 77776 59999999999999999999999999999999999999999999854 46 9999999987
Q ss_pred HHHHhhcCEEEEEeCCeEE-EEcCcc
Q 003437 260 YRIQMLLDRIIVLARGRLV-YMGSPV 284 (820)
Q Consensus 260 ~~i~~~~D~v~lL~~G~iv-~~G~~~ 284 (820)
+ +...|++|+-|+.|++. |.|.-+
T Consensus 212 F-Ld~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 212 F-LDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred H-HHHHhhheEEecCCceeEecCCHH
Confidence 5 88999999999999775 455443
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=320.85 Aligned_cols=218 Identities=28% Similarity=0.390 Sum_probs=183.5
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+++|++.+|..+. ..+|+|||++|+|||.+||+|+.|||||||+++|-++.. +.+|+|.|||.+
T Consensus 1136 ~G~I~f~~~~~RYrp~l----------p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDgvd 1203 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNL----------PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDGVD 1203 (1381)
T ss_pred CCeEEEEEeEEEeCCCC----------cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcCee
Confidence 45699999999996532 359999999999999999999999999999999999885 368999999999
Q ss_pred CCC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCC
Q 003437 125 VTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNE 194 (820)
Q Consensus 125 ~~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~ 194 (820)
+.. .+.|++++.+||||.+|.. |||.||.-..+ .+++ .+-++|+..+| +..+|..+.+
T Consensus 1204 I~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~e------~sD~----~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e- 1271 (1381)
T KOG0054|consen 1204 ISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFDE------YSDD----EIWEALERCQLKDVVSSLPGGLDSEVSE- 1271 (1381)
T ss_pred cccccHHHHHhcCeeeCCCCceecC-ccccccCcccc------cCHH----HHHHHHHHhChHHHHhhCCcCCCceecC-
Confidence 976 3578889999999999998 99999964322 2333 34444444433 3446677753
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+...+|-||||.+++||||+++.+||+|||.|++.|+.+-..|.+.||+-= ++.|||.+.|..+. +.+ +|||+||++
T Consensus 1272 gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-Vmd-~DrVlVld~ 1348 (1381)
T KOG0054|consen 1272 GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-VMD-SDRVLVLDA 1348 (1381)
T ss_pred CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-hhh-cCeEEEeeC
Confidence 456899999999999999999999999999999999999999999999853 37999999999986 544 899999999
Q ss_pred CeEEEEcCccchhhh
Q 003437 275 GRLVYMGSPVALPAH 289 (820)
Q Consensus 275 G~iv~~G~~~~~~~~ 289 (820)
|+++++|+|.++++.
T Consensus 1349 G~v~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1349 GRVVEFDSPAELLSD 1363 (1381)
T ss_pred CeEeecCChHHHHhC
Confidence 999999999998754
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=264.51 Aligned_cols=190 Identities=25% Similarity=0.361 Sum_probs=135.5
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHH-HHHHcCCCCCCCceEEEECC-------Ee---CC-Cc--ccc-ceEEE
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFL-DALAGRIAQGSLEGSVRIDG-------KP---VT-TS--YMK-MVSSY 136 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl-~~L~G~~~~~~~~G~I~i~G-------~~---~~-~~--~~~-~~~gy 136 (820)
..+|+||||++++||+++|+||||||||||+ ..|.. .|++.+.+ .. +. +. ..+ ....+
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAI 80 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCCceE
Confidence 4699999999999999999999999999996 44431 12221100 00 00 00 011 12234
Q ss_pred EccCC-C-CCCCCCHH---HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHHHHHHHH
Q 003437 137 VMQDD-Q-LFPMLTVF---ETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRGVSGGERRRVSIG 210 (820)
Q Consensus 137 v~Q~~-~-l~~~lTV~---e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSGGerqRv~ia 210 (820)
..|++ . +.|..+|. +...+...+. ......++ .++++.+||.+ ..+..+ ..|||||||||+||
T Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la 149 (226)
T cd03270 81 AIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSA-----PTLSGGEAQRIRLA 149 (226)
T ss_pred EecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCcc-----CcCCHHHHHHHHHH
Confidence 44433 2 34445654 2222222111 11122233 56899999976 356555 47999999999999
Q ss_pred HHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE------eCCeEEEEc
Q 003437 211 IDIIHKP--SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL------ARGRLVYMG 281 (820)
Q Consensus 211 ~aL~~~P--~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G 281 (820)
++|+.+| ++|||||||+|||+.++..+.+.|++++++|.|||++||+++. + .+||++++| ++|+|+++|
T Consensus 150 ral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~-~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 150 TQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDT-I-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHH-H-HhCCEEEEeCCCccccCCEEEecC
Confidence 9999998 5999999999999999999999999998789999999999974 5 589999999 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-30 Score=329.68 Aligned_cols=193 Identities=28% Similarity=0.400 Sum_probs=152.4
Q ss_pred cccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHH
Q 003437 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVF 150 (820)
Q Consensus 71 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~ 150 (820)
++.+|+|+|++|++||+++|+|||||||||||++|+|++. +++|+|.++ +.++||+|++.+++ .||+
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~--~~~G~i~~~----------~~i~yv~Q~~~l~~-~Tv~ 738 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWAE----------RSIAYVPQQAWIMN-ATVR 738 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEEC----------CeEEEEeCCCccCC-CcHH
Confidence 3569999999999999999999999999999999999885 467999763 45899999998875 5999
Q ss_pred HHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 003437 151 ETFMFAAEVRLPPSISRDEKK-----KRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEP 225 (820)
Q Consensus 151 e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEP 225 (820)
||+.|+... ..+... ..+++.++.+ .+..++.+|+ ....|||||||||+|||||+.+|+++|||||
T Consensus 739 enI~~~~~~------~~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP 809 (1560)
T PTZ00243 739 GNILFFDEE------DAARLADAVRVSQLEADLAQL--GGGLETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDP 809 (1560)
T ss_pred HHHHcCChh------hHHHHHHHHHHhhhHHHHHHh--hccchHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 999985321 111111 1223334444 1122344543 3457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchh
Q 003437 226 TSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 226 tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
|++||+.++..+++.+.....+|+|+|++||+++. + ..||+|++|++|++++.|+.+++.
T Consensus 810 ~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~-~-~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 810 LSALDAHVGERVVEECFLGALAGKTRVLATHQVHV-V-PRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred cccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999987543222358999999999974 4 579999999999999999988764
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=310.69 Aligned_cols=208 Identities=29% Similarity=0.470 Sum_probs=176.0
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...++++|.+++.+.. ...+.|+|||++|++|+++||+||-|||||+||.+|.|.++ ..+|+|.++|.
T Consensus 516 ~~~i~i~~~sfsW~~~---------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs- 583 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE---------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS- 583 (1381)
T ss_pred CceEEEeeeeEecCCC---------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe-
Confidence 3459999999997542 12348999999999999999999999999999999999874 57899999885
Q ss_pred CCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCCC
Q 003437 125 VTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEGRR 197 (820)
Q Consensus 125 ~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~ 197 (820)
++||+|.+.++.. ||+|||.|+... + +++.+++++...|+ ..-.|.||+++.
T Consensus 584 ---------iaYv~Q~pWI~ng-TvreNILFG~~~------d----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi- 642 (1381)
T KOG0054|consen 584 ---------VAYVPQQPWIQNG-TVRENILFGSPY------D----EERYDKVIKACALKKDLEILPFGDLTEIGERGI- 642 (1381)
T ss_pred ---------EEEeccccHhhCC-cHHHhhhcCccc------c----HHHHHHHHHHccCHhHHhhcCCCCcceecCCcc-
Confidence 7999999999986 999999998542 2 34455555555444 345677887665
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
.||||||||+++|||+-++++|++||.|.|++|......+++..-+..-+++|+|++|||.+ ....+|.|++|++|+|
T Consensus 643 nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~--~L~~ad~Iivl~~G~I 720 (1381)
T KOG0054|consen 643 NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ--FLPHADQIIVLKDGKI 720 (1381)
T ss_pred CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh--hhhhCCEEEEecCCeE
Confidence 69999999999999999999999999999999999999999876654456899999999976 4567999999999999
Q ss_pred EEEcCccchh
Q 003437 278 VYMGSPVALP 287 (820)
Q Consensus 278 v~~G~~~~~~ 287 (820)
+..|+.+|+.
T Consensus 721 ~~~Gty~el~ 730 (1381)
T KOG0054|consen 721 VESGTYEELL 730 (1381)
T ss_pred ecccCHHHHH
Confidence 9999999887
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-30 Score=243.74 Aligned_cols=213 Identities=26% Similarity=0.393 Sum_probs=175.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE--e
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK--P 124 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~--~ 124 (820)
.|.++||+|+|.-.+. +| -..++|+++||+++.||++++=||||+|||||||+|-|-+. +++|+|++.-. -
T Consensus 4 ~l~v~~~~KtFtlH~q-~G----i~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~--~d~G~I~v~H~g~~ 76 (235)
T COG4778 4 PLNVSNVSKTFTLHQQ-GG----VRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL--PDEGQILVRHEGEW 76 (235)
T ss_pred eeeeecchhheEeeec-CC----EEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC--CCCceEEEEeCcch
Confidence 4899999998854321 11 23469999999999999999999999999999999999764 57899998633 2
Q ss_pred CC-----C----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 003437 125 VT-----T----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195 (820)
Q Consensus 125 ~~-----~----~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~ 195 (820)
++ + .-.++.+|||.|--...|..+..|-++-.+.-+ +++++..++++.++|.+|++.+.+-.+.
T Consensus 77 vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~La---- 149 (235)
T COG4778 77 VDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSLA---- 149 (235)
T ss_pred hhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcCC----
Confidence 22 1 113456899999888888888778777665443 5778888899999999999987654443
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
|.+.||||+|||.|||.++.+-+||+|||||+.||..++.-++++|++-+.+|..+|=+-||-+- -...+||++-+..
T Consensus 150 PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeev-re~vadR~~~~~~ 227 (235)
T COG4778 150 PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEV-REAVADRLLDVSA 227 (235)
T ss_pred CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHH-HHHHhhheeeccc
Confidence 46899999999999999999999999999999999999999999999988899999999999653 4568999988754
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-29 Score=263.78 Aligned_cols=195 Identities=26% Similarity=0.386 Sum_probs=153.0
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH-----cCCC-----CC---------CCceEEEECCEeCCCcc----
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA-----GRIA-----QG---------SLEGSVRIDGKPVTTSY---- 129 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~-----G~~~-----~~---------~~~G~I~i~G~~~~~~~---- 129 (820)
.-|+||+..|+.|++++|.|+||||||||++.+. ..+. +. ...--|.+|..++....
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3699999999999999999999999999998552 1110 10 11124777777764311
Q ss_pred ---------ccc----------------eEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 003437 130 ---------MKM----------------VSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR 184 (820)
Q Consensus 130 ---------~~~----------------~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 184 (820)
.|+ .+.|..++...+..+||.|++.|...++ ..+++.++|+.+||.
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL~ 159 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGLG 159 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCCc
Confidence 000 0234555555567899999999886542 124677899999998
Q ss_pred c-cccccccCCCCCCCChHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 185 S-ATHTYIGNEGRRGVSGGERRRVSIGIDIIHK---PSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 185 ~-~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~---P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
+ ..+..+ ..||||||||++||++|+.+ |+++||||||+|||+.....+.+.|+++.++|.|||+++|+++.
T Consensus 160 ~l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~ 234 (261)
T cd03271 160 YIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDV 234 (261)
T ss_pred hhhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 7 355554 47999999999999999996 79999999999999999999999999999889999999999974
Q ss_pred HHHhhcCEEEEE------eCCeEEEEcCc
Q 003437 261 RIQMLLDRIIVL------ARGRLVYMGSP 283 (820)
Q Consensus 261 ~i~~~~D~v~lL------~~G~iv~~G~~ 283 (820)
+ +.||+++.| ++|++++.|++
T Consensus 235 -i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 235 -I-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred -H-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 4 579999999 79999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=242.86 Aligned_cols=134 Identities=43% Similarity=0.707 Sum_probs=119.2
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC---ccccceEEEEccCCCCCCCCCHHH
Q 003437 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT---SYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 75 L~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
|+|||+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP--PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH--ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999999999999999999999999875 368999999999976 345677999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTS 227 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPts 227 (820)
| ...++++++++.+++.+..++.++... ..|||||||||+||++|+.+|++|||||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQRA-SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSCG-GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------ccccccccccccccccccccccccccc-chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 8 234568899999999988888875433 6899999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-28 Score=277.93 Aligned_cols=203 Identities=32% Similarity=0.469 Sum_probs=167.2
Q ss_pred CCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE
Q 003437 44 PGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK 123 (820)
Q Consensus 44 ~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~ 123 (820)
....++++|+++.|.++ +.+++++||.|.+|+.+||+||||+|||||||+|+|... +.+|+|.+.-
T Consensus 318 g~~vl~~~~~~~~y~~~-----------~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~--~~~G~v~~g~- 383 (530)
T COG0488 318 GKLVLEFENVSKGYDGG-----------RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG--PLSGTVKVGE- 383 (530)
T ss_pred CCeeEEEeccccccCCC-----------ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc--cCCceEEeCC-
Confidence 45569999999999642 469999999999999999999999999999999999774 4589998742
Q ss_pred eCCCccccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCh
Q 003437 124 PVTTSYMKMVSSYVMQDD-QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSG 201 (820)
Q Consensus 124 ~~~~~~~~~~~gyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSG 201 (820)
.-.+||..|+. .+.+..|+.|++.-... ...+..+...|..+++... ..+.++ .|||
T Consensus 384 -------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~---------~~~e~~~r~~L~~f~F~~~~~~~~v~-----~LSG 442 (530)
T COG0488 384 -------TVKIGYFDQHRDELDPDKTVLEELSEGFP---------DGDEQEVRAYLGRFGFTGEDQEKPVG-----VLSG 442 (530)
T ss_pred -------ceEEEEEEehhhhcCccCcHHHHHHhhCc---------cccHHHHHHHHHHcCCChHHHhCchh-----hcCH
Confidence 23479999986 45578899998864321 1115678899999999743 456665 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE-
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM- 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~- 280 (820)
|||.||.+|+.++.+|.+|||||||+.||..+...+.+.|.+. ..|||++|||... +..+|++++.+.+ ++..+
T Consensus 443 GEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~F-l~~va~~i~~~~~-~~~~~~ 517 (530)
T COG0488 443 GEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRYF-LDRVATRIWLVED-KVEEFE 517 (530)
T ss_pred hHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHHH-HHhhcceEEEEcC-ceeEcC
Confidence 9999999999999999999999999999999999999998876 5699999999986 8999999999998 55444
Q ss_pred cCccch
Q 003437 281 GSPVAL 286 (820)
Q Consensus 281 G~~~~~ 286 (820)
|..++.
T Consensus 518 g~y~~y 523 (530)
T COG0488 518 GGYEDY 523 (530)
T ss_pred CCHHHH
Confidence 554433
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-29 Score=241.45 Aligned_cols=208 Identities=25% Similarity=0.409 Sum_probs=176.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.++++||+.+- -|-.+|+++..||++-++|||||||||||-.++|+++ -+|+|.++|.++.
T Consensus 3 l~qln~v~~~t----------------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~---~sGsi~~~G~~l~ 63 (248)
T COG4138 3 LMQLNDVAEST----------------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GSGSIQFAGQPLE 63 (248)
T ss_pred eeeeccccccc----------------cccccccccccceEEEEECCCCccHHHHHHHHhCCCC---CCceEEECCcchh
Confidence 36777776542 4778999999999999999999999999999999873 4799999999986
Q ss_pred Cc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 127 TS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
.. ...+..+|+.|+..-...|.|..+|.+. .+.++....++++...++|++...+.+. +|||||
T Consensus 64 ~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~--------qP~~~~a~~i~~i~~~L~l~DKL~Rs~~-----qLSGGE 130 (248)
T COG4138 64 AWSATELARHRAYLSQQQTPPFAMPVWHYLTLH--------QPDKTRTELLNDVAGALALDDKLGRSTN-----QLSGGE 130 (248)
T ss_pred HHhHhHHHHHHHHHhhccCCcchhhhhhhhhhc--------CchHHHHHHHHHHHhhhcccchhhhhhh-----hcCccc
Confidence 42 2345568998876655567888887653 2446677788999999999988777664 799999
Q ss_pred HHHHHHHHHHhc-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 204 RRRVSIGIDIIH-----KP--SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 204 rqRv~ia~aL~~-----~P--~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
-|||-+|-..+. || ++|+||||.++||......+-.+|.+++..|.+||++.||... ..+.+|++++|++|+
T Consensus 131 WQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~ 209 (248)
T COG4138 131 WQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGK 209 (248)
T ss_pred ceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCe
Confidence 999999987764 44 6999999999999999999999999999999999999999986 567899999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
++..|..++++
T Consensus 210 l~~~G~~~eVl 220 (248)
T COG4138 210 LLASGRREEVL 220 (248)
T ss_pred EEeecchhhhc
Confidence 99999998886
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-28 Score=249.37 Aligned_cols=166 Identities=17% Similarity=0.262 Sum_probs=133.0
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-------CCceEEEECCEeCCCccccceEEEEccCCCCCCCCC
Q 003437 76 HDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG-------SLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLT 148 (820)
Q Consensus 76 ~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~-------~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lT 148 (820)
+++++++.+| +++|+||||||||||+++|+|++.+. ...|++.++|++......++.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7789999999 99999999999999999999986322 23467888888765433456789999998765
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh----cCCCEEEEeC
Q 003437 149 VFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII----HKPSLLFLDE 224 (820)
Q Consensus 149 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~----~~P~lLllDE 224 (820)
|.. . ..++++++++. .+..++.+ ..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~~--~---------~~~~~~~~l~~---~~~~~~~~-----~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I---------SQGDVSEIIEA---PGKKVQRL-----SLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E---------ehhhHHHHHhC---CCccccch-----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 12356677776 34445554 469999999999999997 4679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 225 PTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 225 PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
||+|||+..+..+.+.|+++++ +.|||++||++.. + +.||+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~~-~-~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKGT-M-EAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHH-H-hhcceEEEEEe
Confidence 9999999999999999999965 6899999999874 4 68999999875
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-27 Score=264.99 Aligned_cols=217 Identities=29% Similarity=0.431 Sum_probs=181.9
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...++++|++.. ..++|+||++++||+++|-|-=|||+|-|+++|.|..+ ..+|+|.+||++
T Consensus 261 ~~~l~v~~l~~~----------------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~ 322 (500)
T COG1129 261 EPVLEVRNLSGG----------------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKP 322 (500)
T ss_pred CcEEEEecCCCC----------------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEE
Confidence 345888888743 15899999999999999999999999999999999653 458999999998
Q ss_pred CCCc----cccceEEEEccCC---CCCCCCCHHHHHHHHHHhcCC-C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCC
Q 003437 125 VTTS----YMKMVSSYVMQDD---QLFPMLTVFETFMFAAEVRLP-P-SISRDEKKKRVYELLDQLGLRS-ATHTYIGNE 194 (820)
Q Consensus 125 ~~~~----~~~~~~gyv~Q~~---~l~~~lTV~e~l~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~ 194 (820)
+... ..+..++|||.|- -++..++|++|+.++...+.. . -+++...++.+++..+.+++.. ..+..++
T Consensus 323 v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~-- 400 (500)
T COG1129 323 VRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG-- 400 (500)
T ss_pred ccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhh--
Confidence 8643 2445689999874 588899999999988322211 1 2556666778999999999853 3445554
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
.||||.+|||.||+.|..+|++|||||||.|.|.-++.+|.++|++++++|++||++|.+.. |+..+||||++|++
T Consensus 401 ---~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~ 476 (500)
T COG1129 401 ---TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE 476 (500)
T ss_pred ---cCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999999987 58899999999999
Q ss_pred CeEEEEcCccc
Q 003437 275 GRLVYMGSPVA 285 (820)
Q Consensus 275 G~iv~~G~~~~ 285 (820)
|+++..=+.++
T Consensus 477 Gri~~e~~~~~ 487 (500)
T COG1129 477 GRIVGELDREE 487 (500)
T ss_pred CEEEEEecccc
Confidence 99997554443
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-25 Score=278.05 Aligned_cols=138 Identities=22% Similarity=0.349 Sum_probs=114.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHh---cCCC
Q 003437 143 LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDII---HKPS 218 (820)
Q Consensus 143 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~---~~P~ 218 (820)
.+...||.|+|.+...-........++..+++ ++|+.+||.+. .+..+. +|||||||||+||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~-----tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLS-----SLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccc-----cCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45678999999887652211112334455666 58899999875 566654 69999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe------CCeEEEEcCccchhh
Q 003437 219 LLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA------RGRLVYMGSPVALPA 288 (820)
Q Consensus 219 lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~------~G~iv~~G~~~~~~~ 288 (820)
+|||||||+|||+.+...++++|++++++|.|||+++|+++. + ..+|++++|. +|+++..|+++++..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~-i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHV-V-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 999999999999999999999999999889999999999974 5 7899999996 789999999988754
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-26 Score=239.47 Aligned_cols=186 Identities=15% Similarity=0.239 Sum_probs=130.0
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--------------CCCce--------EEEECCEe----C
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ--------------GSLEG--------SVRIDGKP----V 125 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~--------------~~~~G--------~I~i~G~~----~ 125 (820)
+.++++++ |++++|+||||||||||+++|++++.. .+.+| +|.+++.+ +
T Consensus 15 ~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~ 89 (243)
T cd03272 15 QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPI 89 (243)
T ss_pred CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCC
Confidence 34778876 789999999999999999999844210 01234 55665532 1
Q ss_pred C--CccccceEEEEccCCCCCC-CCCHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 126 T--TSYMKMVSSYVMQDDQLFP-MLTVFETFMFAAEVRLPPSISR-DEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 126 ~--~~~~~~~~gyv~Q~~~l~~-~lTV~e~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
. ....++.++|++|+..+++ ..|..|...+...+........ .....++ .+.+++.+..+..+ +.|||
T Consensus 90 ~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i---~~l~~l~~~~~~~~-----~~lS~ 161 (243)
T cd03272 90 DKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKI---NSLTNMKQDEQQEM-----QQLSG 161 (243)
T ss_pred CCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCch---HHhhhccccccccc-----cccCH
Confidence 1 1234566899999887776 4577776665554322110000 0001223 33344544444444 47999
Q ss_pred HHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 202 GERRRVSIGIDIIH----KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 202 GerqRv~ia~aL~~----~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
|||||++||++|+. +|+++|+||||+|||+.++..+++.|+++++ +.+||+++|+++ +.++||++++|.
T Consensus 162 G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~--~~~~~d~i~~l~ 234 (243)
T cd03272 162 GQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPE--LLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHhhCCEEEEEE
Confidence 99999999999973 5899999999999999999999999999865 788888888864 678999999986
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-27 Score=245.06 Aligned_cols=177 Identities=19% Similarity=0.231 Sum_probs=133.6
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
+.+|+++++ ++++|+||||||||||+++|.-. +|.+... ..++.++|++|+..+++.+|+.|
T Consensus 17 ~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~------------~G~~~~~-~~~~~i~~~~~~~~~~~~~~~~~ 78 (212)
T cd03274 17 EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV------------FGFRASK-MRQKKLSDLIHNSAGHPNLDSCS 78 (212)
T ss_pred CeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH------------hccCHHH-hhhhhHHHHhcCCCCCCCCceEE
Confidence 358888887 89999999999999999999732 2322211 11245789999988888899988
Q ss_pred HHHHHHHhcC-----CCCCCHHHHHH--HHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhc----CCCEE
Q 003437 152 TFMFAAEVRL-----PPSISRDEKKK--RVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIH----KPSLL 220 (820)
Q Consensus 152 ~l~~~~~~~~-----~~~~~~~~~~~--~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~----~P~lL 220 (820)
++.+...... ..+...+.... ...++++.++|.+..++.++ .||+|||||++||++++. +|+++
T Consensus 79 ~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~-----~lS~G~~~r~~la~al~~~~~~~p~il 153 (212)
T cd03274 79 VEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS-----NLSGGEKTLSSLALVFALHHYKPTPLY 153 (212)
T ss_pred EEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh-----hcCHHHHHHHHHHHHHHhcccCCCCEE
Confidence 8776653210 00111111111 12566778888877777664 699999999999999974 57999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 221 FLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 221 llDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
++||||+|||+.+...+.+.|+++++ +.|+|+++|++ ++.++||++++|..
T Consensus 154 ilDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 154 VMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 99999999999999999999999864 67888889996 46789999999974
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-25 Score=231.15 Aligned_cols=193 Identities=23% Similarity=0.249 Sum_probs=133.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEe-CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECC--E
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAI-RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG--K 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~-~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G--~ 123 (820)
.|+++|+. +|.+. ++++|... +|++++|+|||||||||||++|++.+. +...+....+. .
T Consensus 5 ~i~l~nf~-~y~~~---------------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~-g~~~~~~~~~~~~~ 67 (213)
T cd03279 5 KLELKNFG-PFREE---------------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALY-GKTPRYGRQENLRS 67 (213)
T ss_pred EEEEECCc-CcCCc---------------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEe-cCccccccchhHHH
Confidence 47777776 54321 44555543 589999999999999999999996542 22233333321 1
Q ss_pred eCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 124 PVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 124 ~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
.+.....+..+++++|++.... ++.... +++.++..+.+ .++..++.+..+..+ ..|||||
T Consensus 68 ~~~~~~~~~~v~~~f~~~~~~~--~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~~~~-----~~lS~G~ 128 (213)
T cd03279 68 VFAPGEDTAEVSFTFQLGGKKY--RVERSR----------GLDYDQFTRIV--LLPQGEFDRFLARPV-----STLSGGE 128 (213)
T ss_pred HhcCCCccEEEEEEEEECCeEE--EEEEec----------CCCHHHHHHhh--hhhhcchHHHhcCCc-----cccCHHH
Confidence 1112223455789998763211 111111 23333222211 234444555555544 4699999
Q ss_pred HHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 204 RRRVSIGIDIIH----------KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 204 rqRv~ia~aL~~----------~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
|||++||++|+. +|++|||||||++||+.+...+.+.|++++++|.|||++||+++. +...+|++++|+
T Consensus 129 ~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~-~~~~~~~i~~~~ 207 (213)
T cd03279 129 TFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEEL-KERIPQRLEVIK 207 (213)
T ss_pred HHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHH-HHhhCcEEEEEe
Confidence 999999999985 578999999999999999999999999998779999999999974 778899999999
Q ss_pred CCe
Q 003437 274 RGR 276 (820)
Q Consensus 274 ~G~ 276 (820)
+|.
T Consensus 208 ~~~ 210 (213)
T cd03279 208 TPG 210 (213)
T ss_pred cCC
Confidence 874
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-26 Score=225.05 Aligned_cols=231 Identities=23% Similarity=0.307 Sum_probs=180.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceEEEECCEe
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG--SLEGSVRIDGKP 124 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~--~~~G~I~i~G~~ 124 (820)
.|.++||+..+...+ +..+++++||+++.+||+-+++|.||||||-..|+|+|..+.. .+.-...+++.+
T Consensus 3 LLDIrnL~IE~~Tsq--------G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~id 74 (330)
T COG4170 3 LLDIRNLTIEFKTSQ--------GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDID 74 (330)
T ss_pred cccccceEEEEecCC--------CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccch
Confidence 378889999886543 2356999999999999999999999999999999999986421 123445566666
Q ss_pred CC---Cccccc----eEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCC---CHHHHHHHHHHHHHHcCCCcccccccc
Q 003437 125 VT---TSYMKM----VSSYVMQDDQ--LFPMLTVFETFMFAAEVRLPPSI---SRDEKKKRVYELLDQLGLRSATHTYIG 192 (820)
Q Consensus 125 ~~---~~~~~~----~~gyv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~ig 192 (820)
+- +...|+ .++++||++. |-|.-+|...|.-........+. .-.-++.++-++|.++|+.+..| +.
T Consensus 75 LL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkD--IM 152 (330)
T COG4170 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--IM 152 (330)
T ss_pred hhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHH--HH
Confidence 43 222333 3568999985 56665665444322111000000 01124567889999999987666 44
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEE
Q 003437 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 193 ~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
..+|.+|.-||-|+|.||.|++.+|++||.||||+.+|+.++.+|+++|.++.+ +|.||++++||... +.+.||++-|
T Consensus 153 ~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~-is~W~d~i~V 231 (330)
T COG4170 153 RSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQM-ISQWADKINV 231 (330)
T ss_pred HhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHH-HHHHhhheEE
Confidence 578889999999999999999999999999999999999999999999999986 69999999999985 8899999999
Q ss_pred EeCCeEEEEcCccchhh
Q 003437 272 LARGRLVYMGSPVALPA 288 (820)
Q Consensus 272 L~~G~iv~~G~~~~~~~ 288 (820)
|.-|+-++.++.+++++
T Consensus 232 lYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 232 LYCGQTVESAPSEELVT 248 (330)
T ss_pred EEecccccccchhHHhc
Confidence 99999999999988865
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.6e-26 Score=239.93 Aligned_cols=184 Identities=19% Similarity=0.262 Sum_probs=135.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE-eCCC-----ccccceEEEEccCC---------CCCCCCCH
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK-PVTT-----SYMKMVSSYVMQDD---------QLFPMLTV 149 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~-~~~~-----~~~~~~~gyv~Q~~---------~l~~~lTV 149 (820)
..+++|+||||||||||+++|++++.+. ..|++.+.|. ++-. ......+++++|++ .+.|.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~-~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT-NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc-ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 4599999999999999999999987432 2468888776 3211 11234678999985 34567899
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccc---------------cccCCCCCCCChHHHHHHHHHHHHh
Q 003437 150 FETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHT---------------YIGNEGRRGVSGGERRRVSIGIDII 214 (820)
Q Consensus 150 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------------~ig~~~~~~LSGGerqRv~ia~aL~ 214 (820)
.+++.+....+.... .++...+++.++|+.+||...... ..-+..+..||||||||++||++|+
T Consensus 104 ~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 104 TRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHH
Confidence 988865432211000 122344788999999999611000 0112234579999999999999998
Q ss_pred ----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 215 ----HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 215 ----~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
.+|+++++||||++||+..+..+.+.|+++. +|.++|++||++ ++.+.||+++-+.
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 5789999999999999999999999999985 489999999995 4677899998875
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-25 Score=227.74 Aligned_cols=165 Identities=21% Similarity=0.289 Sum_probs=124.8
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHH----cCCCCCCCceEEEECCEeCCCccccceEEEEccCC-----CCCCCCC
Q 003437 78 ISGQAIRGEIMAIMGPSGAGKSTFLDALA----GRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDD-----QLFPMLT 148 (820)
Q Consensus 78 vs~~i~~Ge~~allGpnGsGKSTLl~~L~----G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~-----~l~~~lT 148 (820)
.++++.+| +++|+|||||||||||++|. |...+ ..|.+..+...+.....+..+++++|++ .....+|
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~--~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPP--NSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCc--ccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 34567778 99999999999999999995 76543 3455542222233333455688999987 3445568
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH------HHHHHHHhcCCCEEEE
Q 003437 149 VFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR------VSIGIDIIHKPSLLFL 222 (820)
Q Consensus 149 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR------v~ia~aL~~~P~lLll 222 (820)
|.|++.+.. . +.+++.+ +.. ++.||+||+|| ++||++++.+|+++++
T Consensus 93 ~~~~~~~~~---------~----~~~~~~~---------~~~-----~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 93 ILENVIFCH---------Q----GESNWPL---------LDM-----RGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred Hhhceeeec---------h----HHHHHHH---------hcC-----ccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 888886531 1 1223333 223 34799999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 223 DEPTSGLDSTSAY-SVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 223 DEPtsgLD~~~~~-~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
||||++||+..+. .+.+.|++++++ |.+||++||++.. ...||+++.|.+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~--~~~~d~i~~l~~ 197 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEEL--VDAADHIYRVEK 197 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHH--HhhCCEEEEEee
Confidence 9999999999999 999999999876 8999999999864 457999999965
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-24 Score=235.09 Aligned_cols=223 Identities=26% Similarity=0.405 Sum_probs=187.5
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+++||+..-.. +...++||||+++.||+++|.|-.|-|-+.|+.+|+|+.++ .+|+|.++|++
T Consensus 255 ~~vL~V~~L~v~~~~-----------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~ 321 (501)
T COG3845 255 EVVLEVEDLSVKDRR-----------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKD 321 (501)
T ss_pred CeEEEEeeeEeecCC-----------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc--CCceEEECCEe
Confidence 456999999986422 23579999999999999999999999999999999998753 35999999999
Q ss_pred C-C---Cc-cccceEEEEccCC---CCCCCCCHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHHHHcCCCcc-ccccc
Q 003437 125 V-T---TS-YMKMVSSYVMQDD---QLFPMLTVFETFMFAAEVRL----PPSISRDEKKKRVYELLDQLGLRSA-THTYI 191 (820)
Q Consensus 125 ~-~---~~-~~~~~~gyv~Q~~---~l~~~lTV~e~l~~~~~~~~----~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~i 191 (820)
+ . .. ..+..++|||+|. -+.+.+|+.||+.+...-+. ..-+...+..+.+.++++.+++... .+..+
T Consensus 322 v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a 401 (501)
T COG3845 322 VLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPA 401 (501)
T ss_pred ccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcch
Confidence 7 2 22 2234579999986 47888999999988754321 1125667788899999999998632 23333
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEE
Q 003437 192 GNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 192 g~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
+.||||++||+-+||+|..+|++|++.+||.|||..+...|.+.|.++++.|+.|++++-+.+ +++.+||||.+
T Consensus 402 -----~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaV 475 (501)
T COG3845 402 -----RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAV 475 (501)
T ss_pred -----hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeee
Confidence 579999999999999999999999999999999999999999999999999999999999998 59999999999
Q ss_pred EeCCeEEEEcCccch
Q 003437 272 LARGRLVYMGSPVAL 286 (820)
Q Consensus 272 L~~G~iv~~G~~~~~ 286 (820)
|++|+++...++++.
T Consensus 476 i~~Gri~~~~~~~~~ 490 (501)
T COG3845 476 IYEGRIVGIVPPEEA 490 (501)
T ss_pred eeCCceecccccccC
Confidence 999999988887653
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-24 Score=258.01 Aligned_cols=126 Identities=28% Similarity=0.422 Sum_probs=108.2
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHHHHHHHHHHHhcCC---CEEEE
Q 003437 147 LTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRGVSGGERRRVSIGIDIIHKP---SLLFL 222 (820)
Q Consensus 147 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P---~lLll 222 (820)
+||.|++.|...+. + ..+..+.|+.+||.. ..+..+. .||||||||+.||++|+.+| +++||
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~~~-----tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQPAT-----TLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCCcc-----cCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999998876532 1 123467899999986 3555554 69999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE------eCCeEEEEcCccchhh
Q 003437 223 DEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL------ARGRLVYMGSPVALPA 288 (820)
Q Consensus 223 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 288 (820)
||||+|||+.....+++.|+++.++|.|||+++|++.. + ..+|+++.| ++|++++.|+++++..
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~-i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDV-I-KTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-HhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999998889999999999974 4 579999999 6899999999988753
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-25 Score=236.73 Aligned_cols=205 Identities=23% Similarity=0.357 Sum_probs=165.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++|+.|.|.... -=+..||++|++||++-|+|.||||||||++.|.|+..| .+|+|++||++++
T Consensus 322 ~lelrnvrfay~~~~-----------FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~P--qsG~I~ldg~pV~ 388 (546)
T COG4615 322 TLELRNVRFAYQDNA-----------FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP--QSGEILLDGKPVS 388 (546)
T ss_pred ceeeeeeeeccCccc-----------ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCC--CCCceeECCccCC
Confidence 499999999996431 247899999999999999999999999999999999864 5799999999997
Q ss_pred Cc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 127 TS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
.. +.|+..+-|+-|..+|+.+--.| +. ...+.++..|+++.|.+...-.=|+-.+-.||.||
T Consensus 389 ~e~ledYR~LfSavFsDyhLF~~ll~~e------------~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQ 453 (546)
T COG4615 389 AEQLEDYRKLFSAVFSDYHLFDQLLGPE------------GK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQ 453 (546)
T ss_pred CCCHHHHHHHHHHHhhhHhhhHhhhCCc------------cC---CChHHHHHHHHHHHHhhhhcccCCcccccccccch
Confidence 64 34556666787777777531111 10 12356778888888876543332322345799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI-ARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l-~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|||+++-.||+-+.+|+++||=-+.-||.-++.+.+.+--+ .++|+||+.+|||.. -+..+||++.+++|++++.-
T Consensus 454 kKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 454 KKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHHHhcCceeecc
Confidence 99999999999999999999999999999999999887665 557999999999975 57789999999999998754
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-24 Score=246.57 Aligned_cols=197 Identities=27% Similarity=0.405 Sum_probs=157.6
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+++||+..-+.. ...|++.++.+++||.+.|.||||||||||+|+|+|+-+.+ +|+|.+-
T Consensus 390 ~~~i~~~nl~l~~p~~-----------~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g--~G~I~~P--- 453 (604)
T COG4178 390 DHGITLENLSLRTPDG-----------QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG--SGRISMP--- 453 (604)
T ss_pred cceeEEeeeeEECCCC-----------CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC--CCceecC---
Confidence 3569999999986542 36899999999999999999999999999999999998643 4777542
Q ss_pred CCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC-CCCCCChHH
Q 003437 125 VTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNE-GRRGVSGGE 203 (820)
Q Consensus 125 ~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-~~~~LSGGe 203 (820)
....+-|+||.|.+... |.+|.|.++.... .. ..+.+.++|.++||++..++.=+.. =-+-||+||
T Consensus 454 -----~~~~~lflpQ~PY~p~G-tLre~l~YP~~~~---~~----~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GE 520 (604)
T COG4178 454 -----ADSALLFLPQRPYLPQG-TLREALCYPNAAP---DF----SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGE 520 (604)
T ss_pred -----CCCceEEecCCCCCCCc-cHHHHHhCCCCCC---CC----ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhH
Confidence 12346799999998877 9999998864321 12 2456788999999988765532211 124699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
||||++||.|+++|++++|||.|++||+.+...+++.|++-. .+.|||-+.|.+. +..+.++.+-+.
T Consensus 521 qQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 521 QQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeec
Confidence 999999999999999999999999999999999999998733 3799999999986 455667655544
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=252.14 Aligned_cols=125 Identities=29% Similarity=0.410 Sum_probs=105.1
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHhc---CCCEEE
Q 003437 146 MLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDIIH---KPSLLF 221 (820)
Q Consensus 146 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~~---~P~lLl 221 (820)
.+||.|.+.|...+. . ..+..++|+.+||... .++.+ ++|||||+||+.||++|+. +|+++|
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 468888888875432 0 1235678899999753 45554 4799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE------eCCeEEEEcCccch
Q 003437 222 LDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL------ARGRLVYMGSPVAL 286 (820)
Q Consensus 222 lDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~ 286 (820)
|||||+|||+.....+++.|+++.++|.|||+++|++.. + ..||++++| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~-i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDV-I-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999999999999999999999998889999999999974 5 579999999 78999999998764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-24 Score=235.66 Aligned_cols=202 Identities=24% Similarity=0.352 Sum_probs=158.6
Q ss_pred CCCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECC
Q 003437 43 IPGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG 122 (820)
Q Consensus 43 ~~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G 122 (820)
.+++.+.++|++|.|.++ ..++++++|-|.+++.+|++||||+|||||||++.|.+. |..|.|.-.-
T Consensus 385 ~p~pvi~~~nv~F~y~~~-----------~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~ 451 (614)
T KOG0927|consen 385 IPPPVIMVQNVSFGYSDN-----------PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHS 451 (614)
T ss_pred CCCCeEEEeccccCCCCc-----------chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--cccccccccc
Confidence 456679999999998653 159999999999999999999999999999999999885 4568875432
Q ss_pred EeCCCccccceEEEEccC--CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCC
Q 003437 123 KPVTTSYMKMVSSYVMQD--DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGV 199 (820)
Q Consensus 123 ~~~~~~~~~~~~gyv~Q~--~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~L 199 (820)
+ ..+++.-|+ +.+.-+.++.|++.-.. ++....+.+..+|.++||... .+.++ ++|
T Consensus 452 H--------~~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~p~-----~~L 510 (614)
T KOG0927|consen 452 H--------NKLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVVPM-----SQL 510 (614)
T ss_pred c--------ccchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccccch-----hhc
Confidence 2 223344444 23333457777765322 222345678899999999854 44444 479
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE-
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV- 278 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv- 278 (820)
|+|||+||.+|+.++..|.+|+|||||+|||..+...+-+.|.+. ..+||+++||... +.++++++++..+|.+.
T Consensus 511 S~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 511 SDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTK 586 (614)
T ss_pred ccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceee
Confidence 999999999999999999999999999999999999988888665 4689999999985 89999999999987554
Q ss_pred EEcC
Q 003437 279 YMGS 282 (820)
Q Consensus 279 ~~G~ 282 (820)
+.|.
T Consensus 587 ~~G~ 590 (614)
T KOG0927|consen 587 WDGD 590 (614)
T ss_pred cCcc
Confidence 4444
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=232.01 Aligned_cols=215 Identities=26% Similarity=0.374 Sum_probs=151.9
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...+.++|+++++.+ +.+++|+++++.+|+.++|+|+|||||||+|++|.|...|-|..=.++.-.++
T Consensus 73 s~dvk~~sls~s~~g------------~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e 140 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG------------VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSRE 140 (614)
T ss_pred cccceeeeeeeccCC------------ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhccc
Confidence 346999999999854 45999999999999999999999999999999999998765544344443443
Q ss_pred CCCccccceEEEEccCCCCCCCCCHHHHHHHHHH------------------hcCCCCCCHHHHHHHHHHHHHHcCCC-c
Q 003437 125 VTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAE------------------VRLPPSISRDEKKKRVYELLDQLGLR-S 185 (820)
Q Consensus 125 ~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~------------------~~~~~~~~~~~~~~~v~~~l~~lgL~-~ 185 (820)
+.+... +.+-+|.+ +.-..+..+....+ .|. ..+..+..+.++.++|..+|.. +
T Consensus 141 ~~ps~~-~av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~-~~~d~~~~~~k~~~il~glgf~~~ 213 (614)
T KOG0927|consen 141 IEPSEK-QAVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERL-DEMDNDTFEAKAAKILHGLGFLSE 213 (614)
T ss_pred CCCchH-HHHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHH-HhhCchhHHHHHHHHHHhcCCCHh
Confidence 332111 11111110 00001111111000 000 1123344456677788777764 4
Q ss_pred cccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhh
Q 003437 186 ATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQML 265 (820)
Q Consensus 186 ~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 265 (820)
..++.+. ++|||+|.|+++||+|..+|++|+|||||+|||..+..-+-+.|.+... .++|+++|.-+. +-..
T Consensus 214 m~~k~~~-----~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~QDf-ln~v 285 (614)
T KOG0927|consen 214 MQDKKVK-----DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHSQDF-LNGV 285 (614)
T ss_pred HHHHHhh-----ccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecchhh-hhhH
Confidence 5666664 6999999999999999999999999999999999999999888877532 289999998775 8889
Q ss_pred cCEEEEEeCCe-EEEEcCccch
Q 003437 266 LDRIIVLARGR-LVYMGSPVAL 286 (820)
Q Consensus 266 ~D~v~lL~~G~-iv~~G~~~~~ 286 (820)
|.+|+-|++++ +.|.|+-+..
T Consensus 286 CT~Ii~l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 286 CTNIIHLDNKKLIYYEGNYDQY 307 (614)
T ss_pred hhhhheecccceeeecCCHHHH
Confidence 99999999998 5667776544
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-22 Score=218.14 Aligned_cols=188 Identities=28% Similarity=0.345 Sum_probs=146.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.++|.+++++|++- -|+-=.++|..||+++++||||-||||+.++|+|.+.| ++|+ ..
T Consensus 342 lv~y~~~~k~~g~F-------------~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~----~~--- 399 (591)
T COG1245 342 LVEYPDLKKTYGDF-------------KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS----EE--- 399 (591)
T ss_pred eeecchheeecCce-------------EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC----Cc---
Confidence 35566666665421 35555677888999999999999999999999998864 5676 11
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
.-.++|=||--.--...||++.|.-...-+.. ..-...++++-|.|++..++.+. +|||||.||
T Consensus 400 ----~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~-------~s~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQR 463 (591)
T COG1245 400 ----DLKVSYKPQYISPDYDGTVEDLLRSAIRSAFG-------SSYFKTEIVKPLNLEDLLERPVD-----ELSGGELQR 463 (591)
T ss_pred ----cceEeecceeecCCCCCcHHHHHHHhhhhhcc-------cchhHHhhcCccchHHHHhcccc-----cCCchhHHH
Confidence 22357777753332446999988655432111 11234578889999998888876 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
|+||.+|..++++.+||||++.||++.+..+-+.||+.+. .++|.+++-||.-. +..++||+++..
T Consensus 464 vaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 464 VAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999999999999999999999999999999999999986 58999999999874 666789987764
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-22 Score=204.54 Aligned_cols=169 Identities=17% Similarity=0.179 Sum_probs=122.6
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEE--CCEeCC----CccccceEEEEccCCCCCCCC
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRI--DGKPVT----TSYMKMVSSYVMQDDQLFPML 147 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i--~G~~~~----~~~~~~~~gyv~Q~~~l~~~l 147 (820)
-++++++.+.+| +.+|+|||||||||||.+|...+. |+... .|..+. .......+.+++|+..++++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~-----~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~- 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG-----GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN- 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc-----CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC-
Confidence 357778888887 889999999999999999985432 22111 122111 11112346778887655541
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHH----hcCCCEEEEe
Q 003437 148 TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDI----IHKPSLLFLD 223 (820)
Q Consensus 148 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL----~~~P~lLllD 223 (820)
. .. ....++++++++. .+..++.+ +.||+|||||++||++| +.+|+++|||
T Consensus 84 ------------~----~~-~~~~~~~~~~l~~---~~~~~~~~-----~~lS~G~k~r~~ia~al~~~~~~~p~illlD 138 (198)
T cd03276 84 ------------P----LC-VLSQDMARSFLTS---NKAAVRDV-----KTLSGGERSFSTVCLLLSLWEVMESPFRCLD 138 (198)
T ss_pred ------------c----CC-HHHHHHHHHHhcc---ccccCCcc-----cccChhHHHHHHHHHHHHHhcccCCCEEEec
Confidence 0 11 1123567777776 45555555 47999999999999999 5899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC---CcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 224 EPTSGLDSTSAYSVVEKVKDIART---GSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 224 EPtsgLD~~~~~~i~~~L~~l~~~---g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
|||+|||..++..+.+.|+++.++ +.|||+++|+++. +.. +|+|.+|..++
T Consensus 139 EP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-i~~-~d~v~~~~~~~ 192 (198)
T cd03276 139 EFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-LAS-SDDVKVFRMKD 192 (198)
T ss_pred CcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-ccc-ccceeEEEecC
Confidence 999999999999999999998653 3689999999985 655 59999998753
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-22 Score=212.88 Aligned_cols=179 Identities=17% Similarity=0.256 Sum_probs=118.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe--CCCc--------cccceEEEEccCCCC-CCCCCHHHHHH
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP--VTTS--------YMKMVSSYVMQDDQL-FPMLTVFETFM 154 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~--~~~~--------~~~~~~gyv~Q~~~l-~~~lTV~e~l~ 154 (820)
.+++|+|||||||||||++|++.+.+ ..|++..++.. +... ...-.+.|..|++.. .-..++.+...
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~--~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~ 100 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGE--KSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSS 100 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC--CcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCce
Confidence 39999999999999999999998743 24666543321 0000 111112344443321 00111111100
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc---------ccCCC--------CCCCChHHHHHHHHHHHHhcC-
Q 003437 155 FAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY---------IGNEG--------RRGVSGGERRRVSIGIDIIHK- 216 (820)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~---------ig~~~--------~~~LSGGerqRv~ia~aL~~~- 216 (820)
..+.. + +....+.++++++.+|+....... +.+.. +..||||||||++||++++.+
T Consensus 101 ---~~~in-g--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~ 174 (247)
T cd03275 101 ---SYRIN-G--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHS 174 (247)
T ss_pred ---EEEEC-C--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhc
Confidence 00111 0 011234567888889986432111 11111 267999999999999999875
Q ss_pred ---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 217 ---PSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 217 ---P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
|+++|+||||+|||+..+..+.+.|++++++|.+||++||+++ +...||++++|..
T Consensus 175 ~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~--~~~~~d~i~~~~~ 233 (247)
T cd03275 175 YQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEE--FFSKADALVGVYR 233 (247)
T ss_pred cCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHH--HHhhCCeEEEEEe
Confidence 8999999999999999999999999999877999999999965 5678999999875
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-21 Score=212.58 Aligned_cols=204 Identities=21% Similarity=0.279 Sum_probs=156.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|++++|+..-+.+ +..+++|+|++|..|+-+.|.||||||||+|+|+|+|+.+ ..+|++.--...-
T Consensus 432 n~i~~e~v~l~tPt~----------g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp--~~~G~l~k~~~~~ 499 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTN----------GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP--STGGKLTKPTDGG 499 (659)
T ss_pred ceEEeeeeeecCCCC----------CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc--cCCCeEEecccCC
Confidence 469999999986542 2358899999999999999999999999999999999984 3579886543321
Q ss_pred CCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC------CCCCC
Q 003437 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNE------GRRGV 199 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~------~~~~L 199 (820)
. +.+-||||.|.+.-. |.||.+.|+..--.+ ..+....+++.+.|+.++|.|..++.=|-+ =-..|
T Consensus 500 ~-----~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvL 571 (659)
T KOG0060|consen 500 P-----KDLFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVL 571 (659)
T ss_pred C-----CceEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhc
Confidence 1 346799999987666 999999987431111 111123456777788777776554432211 11369
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
|+||+||+++||.+.++|++-||||-||++|......+.+.+|++ |.|.|-+.|..+. .++=|.++-|+.
T Consensus 572 S~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---giT~iSVgHRkSL--~kfHd~~L~~~g 641 (659)
T KOG0060|consen 572 SPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKSL--WKFHDYVLRMDG 641 (659)
T ss_pred CHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc---CCeEEEeccHHHH--HhhhhEEEEecC
Confidence 999999999999999999999999999999999999988887764 9999999999874 455677887865
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.4e-21 Score=187.00 Aligned_cols=211 Identities=22% Similarity=0.309 Sum_probs=158.7
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|++.++.|+|+.. -+++-|+|+.++.|..+.++|.||||||||||+|+|-..-. .|.|.++|++.
T Consensus 12 ~aievsgl~f~y~~~-----------dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~--~~~v~Vlgrsa 78 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVS-----------DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG--GGVVQVLGRSA 78 (291)
T ss_pred ceEEEeccEEecccC-----------CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc--CCeEEEcCcCc
Confidence 459999999999753 26999999999999999999999999999999999954322 49999999864
Q ss_pred CCc---cccceEEEEcc----------CCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 003437 126 TTS---YMKMVSSYVMQ----------DDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG 192 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q----------~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig 192 (820)
-.. .-.....|+-- +-.+...+++.+.| |+.. +... +|-+++++.|++.-... +
T Consensus 79 FhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV~-----g~dp----~Rre~LI~iLDIdl~WR--m- 145 (291)
T KOG2355|consen 79 FHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGVG-----GDDP----ERREKLIDILDIDLRWR--M- 145 (291)
T ss_pred cccccccccCceeEecccccccccccccccccccccHHHHH-hhcc-----CCCh----hHhhhhhhheeccceEE--E-
Confidence 210 00111223221 22233456765544 4432 2222 34456677777642211 1
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEE
Q 003437 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 193 ~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
..+|-|||+||.|++.|++.=++|+|||-|-.||..++..+++.|++-.+ +|.|||..||-.+- +.....+++.
T Consensus 146 ----HkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le~Wpthl~y 220 (291)
T KOG2355|consen 146 ----HKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LETWPTHLVY 220 (291)
T ss_pred ----eeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hhhcchhEEE
Confidence 35999999999999999999999999999999999999999999999876 59999999999875 7788999999
Q ss_pred EeCCeEEEEcCccchh
Q 003437 272 LARGRLVYMGSPVALP 287 (820)
Q Consensus 272 L~~G~iv~~G~~~~~~ 287 (820)
|++|+++-.-+.+++.
T Consensus 221 i~~Gkl~~~l~~~~i~ 236 (291)
T KOG2355|consen 221 IKSGKLVDNLKYQKIK 236 (291)
T ss_pred ecCCeeeeccccchhh
Confidence 9999999755544443
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-21 Score=207.28 Aligned_cols=197 Identities=24% Similarity=0.322 Sum_probs=154.9
Q ss_pred ccCCCCCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEE
Q 003437 39 GLKMIPGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSV 118 (820)
Q Consensus 39 ~~~~~~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I 118 (820)
++...+++.|-++||+|.|++. +++++.++|-|.--..++|+||||.||||||++|.|-+.| ..|+.
T Consensus 578 ep~~L~PPvLGlH~VtFgy~gq-----------kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~ 644 (807)
T KOG0066|consen 578 EPTKLNPPVLGLHDVTFGYPGQ-----------KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGEL 644 (807)
T ss_pred CCCCCCCCeeecccccccCCCC-----------CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchh
Confidence 3455667789999999999753 4689999999999999999999999999999999998754 45765
Q ss_pred EECCEeCCCccccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 003437 119 RIDGKPVTTSYMKMVSSYVMQDD--QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGR 196 (820)
Q Consensus 119 ~i~G~~~~~~~~~~~~gyv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 196 (820)
.- ..+-++|+..|+. .|-..-|.-|.|.-... ++ .+.+...|-.+||...++|.- +
T Consensus 645 RK--------nhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN------lp----yq~ARK~LG~fGL~sHAHTik----i 702 (807)
T KOG0066|consen 645 RK--------NHRLRIGWFDQHANEALNGEETPVEYLQRKFN------LP----YQEARKQLGTFGLASHAHTIK----I 702 (807)
T ss_pred hc--------cceeeeechhhhhHHhhccccCHHHHHHHhcC------CC----hHHHHHHhhhhhhhhccceEe----e
Confidence 32 2345689888864 45556677777653322 22 234567889999998888863 3
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
..||||||-||++|.--+..|+||||||||+.||..+...+.+.|.+. ...||+++||... +.+.--.++|+.+
T Consensus 703 kdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 703 KDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVEN 776 (807)
T ss_pred eecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEcc
Confidence 579999999999999999999999999999999999999988888776 4579999999875 4444345666655
|
|
| >PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.85 E-value=8e-23 Score=208.81 Aligned_cols=207 Identities=25% Similarity=0.388 Sum_probs=183.1
Q ss_pred HHHHHHHHhhHHHhhcChHHH-HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH-hhhhcHHHHHHH
Q 003437 525 REVAVLSWRTALNVIRTPELF-LSREIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFF-SSNDAVPTFIQE 602 (820)
Q Consensus 525 ~Q~~~L~~R~~~~~~Rdp~~~-~~r~~~~i~~~lliG~lf~~l~~~~~~~~~~~~g~~ff~~~~~~~-~~~~~i~~f~~e 602 (820)
+|++.+++|+++..+|||.+. ...++..+++++++|.+|.+++ ++.++. ++.+++++.+.+.++ ...+....+..|
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLG-NSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERE 78 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccc-cccccc-ccceeeehhhHHhhhhhcccchhhhhhh
Confidence 599999999999999999888 8999999999999999999887 333444 556666666665553 344555788999
Q ss_pred hhHHHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhcchH
Q 003437 603 RFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS-LLNFWMILFASLITTNAYVMLVSALVPSY 681 (820)
Q Consensus 603 R~vf~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~-f~~f~l~l~l~~~~~~s~~~~i~a~~ps~ 681 (820)
|..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ ++.+++.++++.++..++|.++++++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~ 158 (210)
T PF01061_consen 79 RGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFESFFLFLLILLLSILCSSGLGLLLAALFPSF 158 (210)
T ss_pred ccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccccchheecccccccccccccccccccchhhh
Confidence 99999999999999999999999999999999999999999999999876 66666777777778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHhhc
Q 003437 682 IAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEF 733 (820)
Q Consensus 682 ~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef 733 (820)
..+..+.+.+..++++++|.++|.+.+|+|++|+.|+||++|++|++..++|
T Consensus 159 ~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 159 RDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999988889999999999999999999999999999999999999887
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-21 Score=213.74 Aligned_cols=201 Identities=23% Similarity=0.325 Sum_probs=142.3
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
..+|...|.+..|++ +.+|++-++++..|..++|+|+||+|||||||+|+. |.| ++.+
T Consensus 78 ~~Di~~~~fdLa~G~------------k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v--~~f~ 135 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG------------KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQV--SGFH 135 (582)
T ss_pred ccceeeeeeeeeecc------------hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCc--CccC
Confidence 345888889988864 359999999999999999999999999999999996 222 2222
Q ss_pred CCCccccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCChH
Q 003437 125 VTTSYMKMVSSYVMQDD-QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT-HTYIGNEGRRGVSGG 202 (820)
Q Consensus 125 ~~~~~~~~~~gyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~ig~~~~~~LSGG 202 (820)
+... .+ -.|++-.. .+..+.++.+-+.--..+. ... +..+...++|..+|..+.. ...+ +.||||
T Consensus 136 veqE-~~--g~~t~~~~~~l~~D~~~~dfl~~e~~l~--~~~---~l~ei~~~~L~glGFt~emq~~pt-----~slSGG 202 (582)
T KOG0062|consen 136 VEQE-VR--GDDTEALQSVLESDTERLDFLAEEKELL--AGL---TLEEIYDKILAGLGFTPEMQLQPT-----KSLSGG 202 (582)
T ss_pred chhh-ee--ccchHHHhhhhhccHHHHHHHHhhhhhh--ccc---hHHHHHHHHHHhCCCCHHHHhccc-----cccCcc
Confidence 2111 11 12333222 2333333333222111111 011 3344455589999997653 3333 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE-EEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV-YMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G 281 (820)
-|-|+++||||..+|+||||||||+.||..+..-+.+.|+.+ +.|+|+++||-.. +-..|..|+-+++-++- |.|
T Consensus 203 WrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHDr~F-Ln~V~tdIIH~~~~kL~~YkG 278 (582)
T KOG0062|consen 203 WRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHDRNF-LNTVCTDIIHLENLKLDYYKG 278 (582)
T ss_pred hhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEeccHHH-HHHHHHHHHHHhhhhhhhhcC
Confidence 999999999999999999999999999999999999999876 4899999999875 77788888888775553 455
Q ss_pred Ccc
Q 003437 282 SPV 284 (820)
Q Consensus 282 ~~~ 284 (820)
.-+
T Consensus 279 N~~ 281 (582)
T KOG0062|consen 279 NYS 281 (582)
T ss_pred cHH
Confidence 433
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.7e-20 Score=202.30 Aligned_cols=202 Identities=22% Similarity=0.342 Sum_probs=157.9
Q ss_pred CCCCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEEC
Q 003437 42 MIPGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRID 121 (820)
Q Consensus 42 ~~~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~ 121 (820)
...++.|++.+|++.|...+ . +++.+++..++--+..+++|+||+||||++|++.|-+. +..|.+.+.
T Consensus 357 ~~~~p~l~i~~V~f~y~p~~---------y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~ 424 (582)
T KOG0062|consen 357 VLSPPNLRISYVAFEYTPSE---------Y-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRH 424 (582)
T ss_pred cCCCCeeEEEeeeccCCCcc---------h-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeec
Confidence 34566799999999886431 1 58999999999999999999999999999999999664 346777654
Q ss_pred CEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCC
Q 003437 122 GKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVS 200 (820)
Q Consensus 122 G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LS 200 (820)
.+.+++|-.|...-+-.+.|-+ +.+....+ .+.++ +.+++-+..+||+.. +...+ .+||
T Consensus 425 --------~r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~--pG~~~----ee~r~hl~~~Gl~g~la~~si-----~~LS 484 (582)
T KOG0062|consen 425 --------PRLRIKYFAQHHVDFLDKNVNA-VDFMEKSF--PGKTE----EEIRRHLGSFGLSGELALQSI-----ASLS 484 (582)
T ss_pred --------ccceecchhHhhhhHHHHHhHH-HHHHHHhC--CCCCH----HHHHHHHHhcCCCchhhhccc-----cccC
Confidence 3566899999765333344433 33333333 23333 446677899999753 33223 4799
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
||||=||++|.....+|.+|+|||||+.||..+-..+.+.|+.. +..||++|||.+. +..+|+.+++.++|++.-
T Consensus 485 GGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~f-i~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 485 GGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEF-ISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHH-HhhcCceeEEEcCCcEEe
Confidence 99999999999999999999999999999999999988888776 5679999999886 889999999999999874
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-19 Score=188.46 Aligned_cols=80 Identities=19% Similarity=0.232 Sum_probs=68.5
Q ss_pred CCCCChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-cEEEEEEcCccHHHHhhcC--
Q 003437 196 RRGVSGGERRRVSIGIDI----IHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-G-SIVLMTIHQPSYRIQMLLD-- 267 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL----~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g-~tvi~~~H~~~~~i~~~~D-- 267 (820)
+..||||||||+.++.+| +.+|+++|+||||+|||+.++..+++.|++++++ | .++|++||+... +.+.+|
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~~ 202 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEKM 202 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCce
Confidence 457999999998877554 5899999999999999999999999999999876 5 579999999764 556666
Q ss_pred EEEEEeCCe
Q 003437 268 RIIVLARGR 276 (820)
Q Consensus 268 ~v~lL~~G~ 276 (820)
+|++|++|+
T Consensus 203 ~v~~l~~g~ 211 (213)
T cd03277 203 TVLCVYNGP 211 (213)
T ss_pred EEEEEecCc
Confidence 788898886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-20 Score=189.18 Aligned_cols=147 Identities=16% Similarity=0.189 Sum_probs=109.2
Q ss_pred ceeeeeEEEeCCc-EEEEEcCCCCcHHHHHHHHH--------cCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCC
Q 003437 74 LLHDISGQAIRGE-IMAIMGPSGAGKSTFLDALA--------GRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLF 144 (820)
Q Consensus 74 iL~~vs~~i~~Ge-~~allGpnGsGKSTLl~~L~--------G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~ 144 (820)
-+.++|+++.+|+ +++|+||||||||||||+|+ |...| ... ...++|+.|...
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp--~~~--------------~~~~~~~~~~~~-- 77 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIP--AAE--------------GSSLPVFENIFA-- 77 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcc--ccc--------------cccCcCccEEEE--
Confidence 3567899999995 89999999999999999998 32211 000 011233333211
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 003437 145 PMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224 (820)
Q Consensus 145 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDE 224 (820)
.++..+..+..+ ..+|+||||++.|+++ +.+|+++++||
T Consensus 78 -----------------------------------~lg~~~~l~~~~-----s~fs~g~~~~~~i~~~-~~~p~llllDE 116 (200)
T cd03280 78 -----------------------------------DIGDEQSIEQSL-----STFSSHMKNIARILQH-ADPDSLVLLDE 116 (200)
T ss_pred -----------------------------------ecCchhhhhcCc-----chHHHHHHHHHHHHHh-CCCCcEEEEcC
Confidence 111111111112 2599999999999987 58999999999
Q ss_pred CCCCCCHHHHHHHH-HHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 225 PTSGLDSTSAYSVV-EKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 225 PtsgLD~~~~~~i~-~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
|++|||+.....+. ..++.+.+.|.++|++||+. ++..+||++++|++|++++.+
T Consensus 117 p~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 117 LGSGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 99999999999997 46888877799999999985 467899999999999998763
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-20 Score=200.34 Aligned_cols=171 Identities=27% Similarity=0.472 Sum_probs=128.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEE-----------EECCEeCCCccccc------e----EEEEccC
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSV-----------RIDGKPVTTSYMKM------V----SSYVMQD 140 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I-----------~i~G~~~~~~~~~~------~----~gyv~Q~ 140 (820)
.++|++++|+||||-||||-+|+|+|.+.|.- |+- .+.|.++.. ++++ + .-||.--
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNL--G~~~~pp~wdeVi~~FrGtELq~-YF~~l~~g~~r~v~K~QYVd~i 173 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNL--GRYEDPPSWDEVIKRFRGTELQN-YFKKLYEGELRAVHKPQYVDLI 173 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCC--CCCCCCCCHHHHHHHhhhhHHHH-HHHHHHcCCcceecchHHHHHH
Confidence 46899999999999999999999999886532 221 111221110 0111 0 1122222
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEE
Q 003437 141 DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLL 220 (820)
Q Consensus 141 ~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lL 220 (820)
+..+-. ||.|-|.-. ....+.+++++.|+|++..|+.+. .|||||.||++||.+++++++++
T Consensus 174 Pk~~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdADvY 235 (591)
T COG1245 174 PKVVKG-KVGELLKKV------------DERGKFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDADVY 235 (591)
T ss_pred HHHhcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccCCEE
Confidence 222323 666655321 122467889999999999998886 69999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 221 FLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 221 llDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
++|||||-||...+..+.+.+++|++.+++||++.||+.- +..++|-|.++..
T Consensus 236 ~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLav-LD~lsD~vhI~YG 288 (591)
T COG1245 236 FFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAV-LDYLSDFVHILYG 288 (591)
T ss_pred EEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHH-HHHhhheeEEEec
Confidence 9999999999999999999999999889999999999863 5667898888864
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=199.91 Aligned_cols=128 Identities=28% Similarity=0.447 Sum_probs=107.4
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCC---CEEEE
Q 003437 146 MLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKP---SLLFL 222 (820)
Q Consensus 146 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P---~lLll 222 (820)
.|||.|...|+... + ...+.-+.|..+||.-.. +|. ...+|||||.|||-+|.+|..+. -+.+|
T Consensus 783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi~---LGQ-patTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYIK---LGQ-PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceEe---cCC-ccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 57888888887542 1 234556778888997432 453 34579999999999999999877 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE------eCCeEEEEcCccchhh
Q 003437 223 DEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL------ARGRLVYMGSPVALPA 288 (820)
Q Consensus 223 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 288 (820)
||||+||-......+++.|.+|.+.|.|||++.|+++ +...+|.|+-| ..|+||+.|+|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999999999999999999999986 66789999998 3579999999999875
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-19 Score=183.32 Aligned_cols=138 Identities=22% Similarity=0.324 Sum_probs=105.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
.+++|+++.. |++++|+||||||||||+|+|+|... +...|.++... .+++|.+.+++.+|+.|+
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a~------~~~~q~~~l~~~~~~~d~ 79 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCAS------SFELPPVKIFTSIRVSDD 79 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEecC------ccCcccceEEEeccchhc
Confidence 4778887765 79999999999999999999998542 12345444321 367787789999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST 232 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~ 232 (820)
+.++... ...+ .+++.++++.+++ .+|+++|+|||++|||+.
T Consensus 80 l~~~~s~------~~~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~ 121 (199)
T cd03283 80 LRDGISY------FYAE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSR 121 (199)
T ss_pred cccccCh------HHHH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHH
Confidence 9775421 1223 2567778877752 699999999999999999
Q ss_pred HHHHHHH-HHHHHHhCCcEEEEEEcCccHHHHh
Q 003437 233 SAYSVVE-KVKDIARTGSIVLMTIHQPSYRIQM 264 (820)
Q Consensus 233 ~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~ 264 (820)
....+.. +++.+.+.|.++|++||+++. +..
T Consensus 122 ~~~~l~~~ll~~l~~~~~tiiivTH~~~~-~~~ 153 (199)
T cd03283 122 ERQAASAAVLKFLKNKNTIGIISTHDLEL-ADL 153 (199)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcHHH-HHh
Confidence 9988754 788888779999999999874 443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.8e-19 Score=189.25 Aligned_cols=208 Identities=25% Similarity=0.421 Sum_probs=153.3
Q ss_pred EEEEEEEEEECcccccc-------------cc-cccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC---
Q 003437 48 LEFKNLSYSIMKKQKKD-------------GV-WITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIA--- 110 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~-------------~~-~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~--- 110 (820)
+.++|+++.+....-.. |. .......+|+|||++++||++++|+|+|||||||||++|.|...
T Consensus 358 ~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ 437 (593)
T COG2401 358 IKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRG 437 (593)
T ss_pred cccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhccc
Confidence 78888888775321100 11 12235679999999999999999999999999999999999752
Q ss_pred ---CCCCceEEEECCEeCCCccccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 003437 111 ---QGSLEGSVRIDGKPVTTSYMKMVSSYVMQDD-QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA 186 (820)
Q Consensus 111 ---~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 186 (820)
..|++|.|.+--.. ..+.+|-+. .-|...|+.|++.-- + -+...+.++|.+.||.+.
T Consensus 438 ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep~f~~~tilehl~s~---------t--GD~~~AveILnraGlsDA 498 (593)
T COG2401 438 EEKYRPDSGKVEVPKNT--------VSALIPGEYEPEFGEVTILEHLRSK---------T--GDLNAAVEILNRAGLSDA 498 (593)
T ss_pred ccccCCCCCceeccccc--------hhhccCcccccccCchhHHHHHhhc---------c--CchhHHHHHHHhhccchh
Confidence 23577877653211 234455432 223355777766311 0 112346688999999763
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhh
Q 003437 187 THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQML 265 (820)
Q Consensus 187 ~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~ 265 (820)
.- -.+..+.||-|||.|+.||.++..+|.+++.||=.+.||+.++..+.+-|.++++ .|.|++++||+|+. +..+
T Consensus 499 vl---yRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv-~~AL 574 (593)
T COG2401 499 VL---YRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV-GNAL 574 (593)
T ss_pred hh---hhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-Hhcc
Confidence 21 1123457999999999999999999999999999999999999999999999986 49999999999975 6666
Q ss_pred -cCEEEEEeCCeEE
Q 003437 266 -LDRIIVLARGRLV 278 (820)
Q Consensus 266 -~D~v~lL~~G~iv 278 (820)
-|+++++.=|++.
T Consensus 575 ~PD~li~vgYg~v~ 588 (593)
T COG2401 575 RPDTLILVGYGKVP 588 (593)
T ss_pred CCceeEEeeccccc
Confidence 7888888766543
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-18 Score=173.06 Aligned_cols=74 Identities=22% Similarity=0.311 Sum_probs=68.6
Q ss_pred CChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 199 VSGGERRRVSIGIDII----HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 199 LSGGerqRv~ia~aL~----~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
||||||||++||++|+ .+|+++++|||+++||+..+..+.+.|++++++|.++|+++|+++. ...+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~--~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEM--FENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH--HhhCCeEEEEEE
Confidence 9999999999999996 6999999999999999999999999999998778999999999863 468999999875
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.5e-18 Score=212.53 Aligned_cols=200 Identities=21% Similarity=0.315 Sum_probs=145.9
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH-cC----CC--CCCCceEEEECCEeCCCcc-------------ccc-
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA-GR----IA--QGSLEGSVRIDGKPVTTSY-------------MKM- 132 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~-G~----~~--~~~~~G~I~i~G~~~~~~~-------------~~~- 132 (820)
=|+||+..|+-|.+++|.|.||||||||++-.. -. +. .....--|.+|..++.... .|+
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 489999999999999999999999999996433 11 00 0112345777766653100 000
Q ss_pred --------e----------------------EEEEccCCCCCC--------------------------------CCCHH
Q 003437 133 --------V----------------------SSYVMQDDQLFP--------------------------------MLTVF 150 (820)
Q Consensus 133 --------~----------------------~gyv~Q~~~l~~--------------------------------~lTV~ 150 (820)
. -|++-=+..++| .|||.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 0 022211111111 46777
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcC---CCEEEEeCCCC
Q 003437 151 ETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHK---PSLLFLDEPTS 227 (820)
Q Consensus 151 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~---P~lLllDEPts 227 (820)
|.+.|+.. ..+-.+.-+.|..+||.... +|. ...+|||||.||+-||..|..+ +.+++|||||+
T Consensus 1665 ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---LGq-~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~ 1731 (1809)
T PRK00635 1665 EVAETFPF---------LKKIQKPLQALIDNGLGYLP---LGQ-NLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIAT 1731 (1809)
T ss_pred HHHHHhhc---------cHHHHHHHHHHHHcCCCeee---CCC-cCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCC
Confidence 77777632 11234566788999997643 443 2347999999999999999875 78999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe------CCeEEEEcCccchhh
Q 003437 228 GLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA------RGRLVYMGSPVALPA 288 (820)
Q Consensus 228 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~------~G~iv~~G~~~~~~~ 288 (820)
||++.....+++.|++|.+.|.|||++.|+++ +...||.|+-|- .|+||+.|+|+++..
T Consensus 1732 GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~--~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1732 SLDNQQKSALLVQLRTLVSLGHSVIYIDHDPA--LLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH--HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999999999999999999999986 445699999994 479999999999865
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-18 Score=191.10 Aligned_cols=183 Identities=22% Similarity=0.320 Sum_probs=133.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|.++||-.--+. ...++..++|.|++|-.+.|+||||||||+|.|+|+|+.+- ..|...+ +
T Consensus 482 I~lenIpvItP~-----------~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv--y~g~L~~------P 542 (728)
T KOG0064|consen 482 IILENIPVITPA-----------GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV--YNGLLSI------P 542 (728)
T ss_pred eEEecCceeccC-----------cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc--cCCeeec------C
Confidence 666666554332 23488999999999999999999999999999999998842 2343322 2
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC----CCCC
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAE---VRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGR----RGVS 200 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~---~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~----~~LS 200 (820)
...++-|+||.|..-- -|.+|.+.++-. ++ ..+.++ +....+|+.+.|++.+.+-.|=+.+ .-||
T Consensus 543 --~~~~mFYIPQRPYms~-gtlRDQIIYPdS~e~~~-~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~Ls 614 (728)
T KOG0064|consen 543 --RPNNIFYIPQRPYMSG-GTLRDQIIYPDSSEQMK-RKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLS 614 (728)
T ss_pred --CCcceEeccCCCccCc-CcccceeecCCcHHHHH-hcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhcc
Confidence 2345789999987653 377777766421 11 012222 3455666666666554443321111 2599
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
||||||+++||.+-++|+..+|||-||+..+.....+.+..+. .|.+.|-++|+|+.
T Consensus 615 gGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpsl 671 (728)
T KOG0064|consen 615 GGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSL 671 (728)
T ss_pred chHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccH
Confidence 9999999999999999999999999999999888888877654 49999999999985
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.2e-18 Score=180.90 Aligned_cols=76 Identities=26% Similarity=0.418 Sum_probs=68.5
Q ss_pred CCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 198 GVSGGERRRVSIGIDIIH----KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~----~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
.|||||+||+++|++++. +|+++++||||++||+.....+.+.|+++.+ +.|+|+++|++. +..++|++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999987654 9999999999999999999999999999865 789999999986 457899999998
Q ss_pred CCe
Q 003437 274 RGR 276 (820)
Q Consensus 274 ~G~ 276 (820)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-18 Score=179.00 Aligned_cols=152 Identities=20% Similarity=0.266 Sum_probs=115.0
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEE-EEccCCCCCCCCCHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSS-YVMQDDQLFPMLTVF 150 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~g-yv~Q~~~l~~~lTV~ 150 (820)
..+.+|++++..+|++++|.||||+||||||++++-.. ...++| |||.+...++
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------------------~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV--------------------LMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH--------------------HHHHhCCCcCcccEEEe-----
Confidence 35899999999999999999999999999999998210 011222 5555432111
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHH--hcCCCEEEEeCC---
Q 003437 151 ETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDI--IHKPSLLFLDEP--- 225 (820)
Q Consensus 151 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL--~~~P~lLllDEP--- 225 (820)
.+++++..+|+.+.. . +++|.|+++++.+++++ +.+|+++|||||
T Consensus 72 ----------------------~~~~il~~~~l~d~~---~-----~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 72 ----------------------IVDCILARVGASDSQ---L-----KGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ----------------------ccceeEeeeccccch---h-----cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 123455566665432 1 36999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 226 TSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 226 tsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
|++||+...... .++.+.+ .|.++|++||+. ++.++||++..+++|++...+.
T Consensus 122 T~~lD~~~~~~~--il~~l~~~~~~~vlisTH~~--el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIATQIKCFCLFATHFH--ELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CChHHHHHHHHH--HHHHHHhcCCCeEEEEechH--HHHHHhhcCCCeEEEEEEEEEe
Confidence 999999888543 3455554 489999999973 5788999999999999987664
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.6e-18 Score=166.45 Aligned_cols=75 Identities=25% Similarity=0.439 Sum_probs=68.0
Q ss_pred CCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 198 GVSGGERRRVSIGIDIIH----KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~----~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
+||+||+||++||++|+. +|+++|+|||++|||+.....+.+.|.++.++|.++|++||+++. ...+|+++.|+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~--~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPEL--AELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH--HHhhhhEEEEE
Confidence 399999999999999987 789999999999999999999999999987668999999999864 45789999986
Q ss_pred C
Q 003437 274 R 274 (820)
Q Consensus 274 ~ 274 (820)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.3e-17 Score=198.18 Aligned_cols=136 Identities=26% Similarity=0.421 Sum_probs=111.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCC---CC---HHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHhcC
Q 003437 144 FPMLTVFETFMFAAEVRLPPS---IS---RDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDIIHK 216 (820)
Q Consensus 144 ~~~lTV~e~l~~~~~~~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~~~ 216 (820)
+-.+||.|.+.|.-.+..+.. +. .++..++++ .|+.+||.+. +|+.+. .|||||||||.||++|+.+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~-----~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchh-----hCCHHHHHHHHHHHHHhhC
Confidence 346899999999554422110 00 013344554 6888999865 677765 6999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE------eCCeEEEEcCccchh
Q 003437 217 P--SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL------ARGRLVYMGSPVALP 287 (820)
Q Consensus 217 P--~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 287 (820)
| ++++|||||+|||+..+..++++|++++++|.|||+++|+++. +. .||+|++| ++|++++.|+++++.
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~-i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDT-IR-AADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HH-hCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 7 9999999999999999999999999998889999999999874 54 69999999 899999999998764
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.1e-18 Score=183.46 Aligned_cols=212 Identities=24% Similarity=0.313 Sum_probs=150.7
Q ss_pred CCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE
Q 003437 44 PGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK 123 (820)
Q Consensus 44 ~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~ 123 (820)
+...|.++|.+.+-.+ +.++.+.|++|-.|..++|+||||-||||||+-|+.+-..-|..=.|++-.+
T Consensus 261 na~DIKiEnF~ISA~G------------k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQ 328 (807)
T KOG0066|consen 261 NAMDIKIENFDISAQG------------KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQ 328 (807)
T ss_pred hcccceeeeeeeeccc------------ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeee
Confidence 4456899998887543 3588999999999999999999999999999999987422222223343333
Q ss_pred eCCC-----------ccccceEEEEccCC-----CCCCCCCHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 003437 124 PVTT-----------SYMKMVSSYVMQDD-----QLFPMLTVFETFMFAA-EVRLPPSISRDEKKKRVYELLDQLGLRSA 186 (820)
Q Consensus 124 ~~~~-----------~~~~~~~gyv~Q~~-----~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 186 (820)
.+.. ... ++...+-..+ .--...|+.|-|.-.+ .+|. +.....+.++..+|.-||.+..
T Consensus 329 Evvad~t~Ai~tvl~aD~-kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskE 404 (807)
T KOG0066|consen 329 EVVADSTSAIDTVLKADK-KRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKE 404 (807)
T ss_pred eeeecCcHHHHHHHHhhH-HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChh
Confidence 3210 000 1111111111 1113456666664332 3331 1222345678889999999765
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhc
Q 003437 187 THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL 266 (820)
Q Consensus 187 ~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 266 (820)
.....- ...|||-|-||++||||...|-+|.|||||+.||.....-+-+.|+.+. +|.++++||-.. +...|
T Consensus 405 MQ~rPt----~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQgF-LD~VC 476 (807)
T KOG0066|consen 405 MQERPT----TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQGF-LDSVC 476 (807)
T ss_pred HhcCCc----cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccch-HHHHH
Confidence 433322 3699999999999999999999999999999999999999999999885 599999999986 78899
Q ss_pred CEEEEEeCCeEEE
Q 003437 267 DRIIVLARGRLVY 279 (820)
Q Consensus 267 D~v~lL~~G~iv~ 279 (820)
..|+-|++-++.|
T Consensus 477 tdIIHLD~qkLhy 489 (807)
T KOG0066|consen 477 TDIIHLDNQKLHY 489 (807)
T ss_pred HHHhhhhhhhhhh
Confidence 9999999887654
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.8e-17 Score=196.35 Aligned_cols=135 Identities=26% Similarity=0.400 Sum_probs=107.2
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCH------HHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHhcCC
Q 003437 145 PMLTVFETFMFAAEVRLPPSISR------DEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDIIHKP 217 (820)
Q Consensus 145 ~~lTV~e~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P 217 (820)
-.|||.|.+.|...+........ .+..+++ +.|..+||... .++.+ .+|||||+|||.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~-----~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAA-----GTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCc-----CcCCHHHHHHHHHHHHHhhCC
Confidence 36899999988876532110000 1112222 23677788654 45555 479999999999999999986
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE------eCCeEEEEcCccchh
Q 003437 218 --SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL------ARGRLVYMGSPVALP 287 (820)
Q Consensus 218 --~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 287 (820)
+++||||||+|||+.....++++|+++.++|.|||+++|+++. + ..||++++| ++|++++.|+++++.
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~-i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEET-I-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH-H-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 8999999999999999999999999998889999999999874 5 489999999 899999999988764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-17 Score=170.08 Aligned_cols=157 Identities=15% Similarity=0.166 Sum_probs=104.6
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHH
Q 003437 76 HDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMF 155 (820)
Q Consensus 76 ~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~ 155 (820)
-..++++.+|++++|+|||||||||||++|++.... ...|.. +.. .+..++|..| ++..+...++
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~-~~~g~~------~~~--~~~~i~~~dq---i~~~~~~~d~--- 84 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL-AQIGCF------VPA--ESASIPLVDR---IFTRIGAEDS--- 84 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH-HHcCCC------ccc--cccccCCcCE---EEEEecCccc---
Confidence 344666668999999999999999999999964310 011211 000 0112233222 1111111111
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 003437 156 AAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAY 235 (820)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~ 235 (820)
.+..+ ..++++++ |+..+.+++.+|+++|+||||+|||+....
T Consensus 85 -------------------------------i~~~~-----s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~ 127 (202)
T cd03243 85 -------------------------------ISDGR-----STFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGL 127 (202)
T ss_pred -------------------------------ccCCc-----eeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHH
Confidence 11111 23666655 477778889999999999999999999988
Q ss_pred HHHH-HHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccch
Q 003437 236 SVVE-KVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286 (820)
Q Consensus 236 ~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 286 (820)
.+.. +++.+.+.+.++|++||+++ +...+|++..+..|++...+...++
T Consensus 128 ~l~~~ll~~l~~~~~~vi~~tH~~~--~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 128 AIAYAVLEHLLEKGCRTLFATHFHE--LADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHHHHhcCCeEEEECChHH--HHHHhhcCCCeEEEEEEEEecCCee
Confidence 8765 46667777899999999974 5667999999999999988765443
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.5e-16 Score=165.12 Aligned_cols=76 Identities=17% Similarity=0.282 Sum_probs=63.3
Q ss_pred CCCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhc-
Q 003437 197 RGVSGGERRRVSIGIDII---------HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL- 266 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~---------~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~- 266 (820)
.-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++. .+++++|+... +..+|
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~~~-~~~~~~ 256 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDLAD-FDALWL 256 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCchh-ccchhc
Confidence 358999999999999985 7999999999999999999999999998753 35666665543 55666
Q ss_pred --CEEEEEeCCeE
Q 003437 267 --DRIIVLARGRL 277 (820)
Q Consensus 267 --D~v~lL~~G~i 277 (820)
++++.|++|++
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 68999999985
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-16 Score=161.39 Aligned_cols=137 Identities=19% Similarity=0.304 Sum_probs=99.7
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
..+.+|+++++++|++++|+||||+|||||+++|++... +.+...|| +...+.+++.|
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-------------------la~~G~~v---pa~~~~l~~~d 73 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-------------------MAQIGCFV---PAEYATLPIFN 73 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-------------------HHHcCCCc---chhhcCccChh
Confidence 458999999999999999999999999999999998641 11111233 23344556666
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDS 231 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~ 231 (820)
+|.. .++..+..+... +.+|+|++|+ ..+.+++.+|+++|+|||++|+|+
T Consensus 74 ~I~~------------------------~~~~~d~~~~~~-----S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~ 123 (204)
T cd03282 74 RLLS------------------------RLSNDDSMERNL-----STFASEMSET-AYILDYADGDSLVLIDELGRGTSS 123 (204)
T ss_pred heeE------------------------ecCCccccchhh-----hHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCH
Confidence 6532 222222222222 3589999965 566778999999999999999999
Q ss_pred HHHHHHH-HHHHHHHhCCcEEEEEEcCccH
Q 003437 232 TSAYSVV-EKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 232 ~~~~~i~-~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
.....+. ..++.+.+.|.++|++||+.+.
T Consensus 124 ~~~~~l~~~il~~l~~~~~~~i~~TH~~~l 153 (204)
T cd03282 124 ADGFAISLAILECLIKKESTVFFATHFRDI 153 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 8766654 5677777789999999999864
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.6e-15 Score=153.48 Aligned_cols=158 Identities=21% Similarity=0.181 Sum_probs=107.7
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
.+.+|++++.++ ++++|+||||+|||||||+|++.... |. .|..+.. .+..++|+.| +++.+++.|+
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l----~~---~g~~vp~--~~~~i~~~~~---i~~~~~~~~~ 85 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL----AQ---IGSFVPA--SKAEIGVVDR---IFTRIGASDD 85 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH----hc---cCCeecc--ccceecceee---EeccCCchhh
Confidence 489999999987 99999999999999999999875421 11 1222221 1234566654 5667777776
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCC---CCCC
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEP---TSGL 229 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEP---tsgL 229 (820)
+..+.. . . ..|+++++-+...+.+|+++||||| |++|
T Consensus 86 ls~g~s--------~-------------------------------f-~~e~~~l~~~l~~~~~~~llllDEp~~gt~~l 125 (216)
T cd03284 86 LAGGRS--------T-------------------------------F-MVEMVETANILNNATERSLVLLDEIGRGTSTY 125 (216)
T ss_pred hccCcc--------h-------------------------------H-HHHHHHHHHHHHhCCCCeEEEEecCCCCCChH
Confidence 643210 0 0 1223344444444679999999999 8888
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchh
Q 003437 230 DSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 230 D~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
|.... ...+++.+.+. +.++|++||+. ++.+++|++..+.+|++...+..+++.
T Consensus 126 D~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 126 DGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred HHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 87552 23455555655 89999999996 367789988888889888777666553
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-14 Score=156.14 Aligned_cols=178 Identities=25% Similarity=0.343 Sum_probs=134.8
Q ss_pred ccccceeeeeEEEeCCc-----EEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCC
Q 003437 70 KEAYLLHDISGQAIRGE-----IMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLF 144 (820)
Q Consensus 70 ~~~~iL~~vs~~i~~Ge-----~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~ 144 (820)
+.+.-+.+..+.|+.|+ ++..+|.||.|||||+++|+|++.|+ ..|+|-. -.++|=||...-=
T Consensus 347 ~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd-~~~e~p~-----------lnVSykpqkispK 414 (592)
T KOG0063|consen 347 KMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPD-EGGEIPV-----------LNVSYKPQKISPK 414 (592)
T ss_pred cceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCC-ccCcccc-----------cceeccccccCcc
Confidence 34557788888888774 78999999999999999999988653 2333321 2356667754332
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 003437 145 PMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224 (820)
Q Consensus 145 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDE 224 (820)
..-||++.+.--. + +.-.....+.++++-|.+++..|.-+- +|||||.|||++|.+|=..+++.+.||
T Consensus 415 ~~~tvR~ll~~kI--r-----~ay~~pqF~~dvmkpL~ie~i~dqevq-----~lSggelQRval~KOGGKpAdvYliDE 482 (592)
T KOG0063|consen 415 REGTVRQLLHTKI--R-----DAYMHPQFVNDVMKPLQIENIIDQEVQ-----GLSGGELQRVALALCLGKPADVYLIDE 482 (592)
T ss_pred ccchHHHHHHHHh--H-----hhhcCHHHHHhhhhhhhHHHHHhHHhh-----cCCchhhHHHHHHHhcCCCCceEEecC
Confidence 3348888764321 1 111123567888888888887777664 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 225 PTSGLDSTSAYSVVEKVKDIA-RTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 225 PtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
|.+-||++.+...-+.+++.. +.++|-.++.||.-. .-.++||+++.
T Consensus 483 psAylDSeQRi~AskvikRfilhakktafvVEhdfIm-aTYladrvivf 530 (592)
T KOG0063|consen 483 PSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIM-ATYLADRVIVF 530 (592)
T ss_pred chhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHH-HHhhcceeEEE
Confidence 999999999999999998875 568999999999754 33468888654
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-14 Score=152.83 Aligned_cols=140 Identities=21% Similarity=0.238 Sum_probs=96.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRL 161 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~ 161 (820)
.-++|+||||||||||+++|+|.+.+ .+|+|.++|+++... .....+++++|++ +.+.++|.++..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~--~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST--GISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC--CCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch-------
Confidence 57899999999999999999999864 579999999998531 2233456788865 334455554311
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 003437 162 PPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKV 241 (820)
Q Consensus 162 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L 241 (820)
+.+ | .....+..+|+++++|||++ ...+..++
T Consensus 182 -----k~~--------------------------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 182 -----KAE--------------------------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred -----HHH--------------------------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHH
Confidence 000 0 12223346999999999974 23344455
Q ss_pred HHHHhCCcEEEEEEcCccHHH------------HhhcCEEEEEeCCeEEEEcCccch
Q 003437 242 KDIARTGSIVLMTIHQPSYRI------------QMLLDRIIVLARGRLVYMGSPVAL 286 (820)
Q Consensus 242 ~~l~~~g~tvi~~~H~~~~~i------------~~~~D~v~lL~~G~iv~~G~~~~~ 286 (820)
+.+ ++|.++|+++|+++.+- ..+|||+++|++|+ ..|+++++
T Consensus 214 ~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 214 EAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 554 46999999999875422 26699999999887 66666654
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-14 Score=145.46 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=56.4
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVV-EKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~-~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.+|+|++|...+.. .+.+|+++|+|||++|+|+.....+. .+++.+.++ +.++|++||+++ +.+++|+.--+.++
T Consensus 61 ~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~--l~~~~~~~~~v~~~ 137 (185)
T smart00534 61 TFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE--LTKLADEHPGVRNL 137 (185)
T ss_pred HHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH--HHHHhhcCccceEE
Confidence 58888776433333 34599999999999999999888775 556777764 899999999984 66778753333444
Q ss_pred eE
Q 003437 276 RL 277 (820)
Q Consensus 276 ~i 277 (820)
+.
T Consensus 138 ~~ 139 (185)
T smart00534 138 HM 139 (185)
T ss_pred EE
Confidence 43
|
|
| >TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.3e-12 Score=131.32 Aligned_cols=196 Identities=14% Similarity=0.158 Sum_probs=138.5
Q ss_pred hhHHHhhcChHHHHHHHHHHHHHHHHHHHHhccC-CCC-CHHHHH----HHHHHHHHHHHHHHHhhhhcHHHHHHHhh-H
Q 003437 533 RTALNVIRTPELFLSREIVFAVMALILSSLFKNL-SHH-DFKTIN----RLLNFYIFAVCLVFFSSNDAVPTFIQERF-I 605 (820)
Q Consensus 533 R~~~~~~Rdp~~~~~r~~~~i~~~lliG~lf~~l-~~~-~~~~~~----~~~g~~ff~~~~~~~~~~~~i~~f~~eR~-v 605 (820)
|+++..+|||.....-+++-+++.+++|.+|-.. +.. ...+.+ -..|.+.+.++.... ..... ...||. -
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~--~~~~~-~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSF--FSGIS-VIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHH--HhhhH-HHHHHHhC
Confidence 7788899999999999999999999998887432 110 011111 112322222222111 11222 222332 2
Q ss_pred HHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Q 003437 606 FIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS-LLNFWMILFASLITTNAYVMLVSALVPSYIAG 684 (820)
Q Consensus 606 f~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~-f~~f~l~l~l~~~~~~s~~~~i~a~~ps~~~a 684 (820)
+.++....=.++..|++++.+.+++..++..+++.++.|++.+++.. +..+++.+++..++..+++.++++.+++.+.+
T Consensus 78 ~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~ 157 (236)
T TIGR01247 78 FLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKPSGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGF 157 (236)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 33333333456789999999999999999999999999988776643 33344444455566778999999999998888
Q ss_pred HHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHh
Q 003437 685 YAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTN 731 (820)
Q Consensus 685 ~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~n 731 (820)
..+......+++.+||.+.|.+.+|.|++|+.|++|++|+.|++-..
T Consensus 158 ~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~ 204 (236)
T TIGR01247 158 QIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYY 204 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHH
Confidence 88888888888999999999999999999999999999999996543
|
This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-12 Score=145.10 Aligned_cols=77 Identities=22% Similarity=0.415 Sum_probs=65.7
Q ss_pred CCCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhc-
Q 003437 197 RGVSGGERRRVSIGIDII---------HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL- 266 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~---------~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~- 266 (820)
..+|.||+|+++||+.|+ .+|+||+||||+++||+..+..+++.|.++ +..+++++|++.. +...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~-~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLED-LADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhh-hhhhhc
Confidence 469999999999999886 799999999999999999999999998764 4578999998764 44443
Q ss_pred -CEEEEEeCCeE
Q 003437 267 -DRIIVLARGRL 277 (820)
Q Consensus 267 -D~v~lL~~G~i 277 (820)
++++.+++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 47899999987
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-12 Score=133.26 Aligned_cols=132 Identities=20% Similarity=0.201 Sum_probs=86.9
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCC-CCCCHHHH
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLF-PMLTVFET 152 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~-~~lTV~e~ 152 (820)
+-+|+++.=..+.+++|.||||+|||||||.|+..... ...|...... .-.++|..|....+ ...++.++
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~--------~~~~~~~d~i~~~l~~~~si~~~ 88 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD--------SATIGLVDKIFTRMSSRESVSSG 88 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC--------CcEEeeeeeeeeeeCCccChhhc
Confidence 44555543222379999999999999999999842100 1235443211 12356666643211 11121111
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC--hHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS--GGERRRVSIGIDIIHKPSLLFLDEPTSGLD 230 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS--GGerqRv~ia~aL~~~P~lLllDEPtsgLD 230 (820)
+| --|.||++++++++.+|+++|+|||++|+|
T Consensus 89 ----------------------------------------------~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd 122 (213)
T cd03281 89 ----------------------------------------------QSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTD 122 (213)
T ss_pred ----------------------------------------------cchHHHHHHHHHHHHHhCCCCcEEEeccccCCCC
Confidence 22 346689999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHhC---CcEEEEEEcCccH
Q 003437 231 STSAYSV-VEKVKDIART---GSIVLMTIHQPSY 260 (820)
Q Consensus 231 ~~~~~~i-~~~L~~l~~~---g~tvi~~~H~~~~ 260 (820)
+.....+ ...|+.+.+. +.++|++||+++.
T Consensus 123 ~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l 156 (213)
T cd03281 123 TEDGAGLLIATIEHLLKRGPECPRVIVSTHFHEL 156 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHH
Confidence 9765555 5688888764 3589999999864
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.4e-13 Score=160.70 Aligned_cols=133 Identities=20% Similarity=0.291 Sum_probs=92.4
Q ss_pred eeeEEEeCC-cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCC-CCCCCCHHHHHH
Q 003437 77 DISGQAIRG-EIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQ-LFPMLTVFETFM 154 (820)
Q Consensus 77 ~vs~~i~~G-e~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~-l~~~lTV~e~l~ 154 (820)
.+|+.+.++ ++++|.||||+|||||||+|+|.... ...| .+||.... .++ +.+.+.
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~-aq~G------------------~~Vpa~~~~~~~---~~d~i~ 370 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM-FQSG------------------IPIPANEHSEIP---YFEEIF 370 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH-HHhC------------------CCccCCcccccc---chhhee
Confidence 378888877 99999999999999999999986210 1112 13333321 111 111110
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 003437 155 FAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSA 234 (820)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~ 234 (820)
. .+..+ + .+.+ ....+|+|+++++.|++.+ .+|+++|+|||++|+|+...
T Consensus 371 --~------~i~~~---~---si~~---------------~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg 420 (771)
T TIGR01069 371 --A------DIGDE---Q---SIEQ---------------NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEG 420 (771)
T ss_pred --e------ecChH---h---HHhh---------------hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHH
Confidence 0 01110 0 0111 1236999999999998876 89999999999999999999
Q ss_pred HHH-HHHHHHHHhCCcEEEEEEcCccHH
Q 003437 235 YSV-VEKVKDIARTGSIVLMTIHQPSYR 261 (820)
Q Consensus 235 ~~i-~~~L~~l~~~g~tvi~~~H~~~~~ 261 (820)
..+ ..+|+.+.+.|.++|++||+.+..
T Consensus 421 ~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 421 SALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred HHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 999 567888888899999999998643
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-12 Score=133.77 Aligned_cols=88 Identities=26% Similarity=0.460 Sum_probs=65.5
Q ss_pred HHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 003437 172 KRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII----HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART 247 (820)
Q Consensus 172 ~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~----~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~ 247 (820)
+.+.+.+...++... .||||||.+++||.-|+ .+.++++||||.++||...+..+.++|+++.+
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 445666776666432 59999999999997764 46789999999999999999999999999875
Q ss_pred CcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 248 GSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 248 g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
+.=+|++||++. ++..+|+.+.+.
T Consensus 189 ~~Q~ii~Th~~~--~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNPE--MFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-HH--HHTT-SEEEEEE
T ss_pred cccccccccccc--cccccccccccc
Confidence 366899999975 678899877654
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-12 Score=140.56 Aligned_cols=172 Identities=25% Similarity=0.358 Sum_probs=120.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---CceEE------EECCEeCCCccccce--------E--EEEccCCCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRIAQGS---LEGSV------RIDGKPVTTSYMKMV--------S--SYVMQDDQL 143 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~---~~G~I------~i~G~~~~~~~~~~~--------~--gyv~Q~~~l 143 (820)
.||++.+++|-||-||||-|++|+|.++|.. +.+-. ++.|-++.. .+.+. + -||.|-+..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~-yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQN-YFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhh-hhhhhccccccCcCChHHHHHHHHH
Confidence 4799999999999999999999999886531 11100 111111100 00000 0 011111111
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEe
Q 003437 144 FPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLD 223 (820)
Q Consensus 144 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllD 223 (820)
.. .+|.++|. ....++..+++++.+.|.+..++-+. .|||||-||.+||++-+.+.++.++|
T Consensus 177 ~k-~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMFD 238 (592)
T KOG0063|consen 177 VK-GTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMFD 238 (592)
T ss_pred HH-HHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEec
Confidence 10 13333322 12223356778888888888877775 69999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 224 EPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 224 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
||.+-||...+..-...++.+....+=||++.||.+- +..+.|-+..|..
T Consensus 239 EpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV-LDylSDFiCcLYG 288 (592)
T KOG0063|consen 239 EPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV-LDYLSDFICCLYG 288 (592)
T ss_pred CCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH-HHhhhcceeEEec
Confidence 9999999999999999999999888999999999984 5567888888864
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-12 Score=119.73 Aligned_cols=73 Identities=15% Similarity=0.088 Sum_probs=61.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC---ccccceEEEEccCCCCCCCCCH
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT---SYMKMVSSYVMQDDQLFPMLTV 149 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~~~l~~~lTV 149 (820)
.+|+++++.+++||+++|+||||||||||+++|. +|++.++|.++.. ....+.++|++|+ ++. .|+
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ti 71 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IRL 71 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hhH
Confidence 5899999999999999999999999999999986 4899999998753 2345567788887 554 399
Q ss_pred HHHHHHH
Q 003437 150 FETFMFA 156 (820)
Q Consensus 150 ~e~l~~~ 156 (820)
+|||.++
T Consensus 72 ~~Ni~~~ 78 (107)
T cd00820 72 RLNIFLI 78 (107)
T ss_pred Hhhceee
Confidence 9999873
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.2e-11 Score=124.45 Aligned_cols=149 Identities=16% Similarity=0.132 Sum_probs=121.1
Q ss_pred CChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 003437 615 YRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHS-SLLNFWMILFASLITTNAYVMLVSALVPSYIAGYAVVIATTA 693 (820)
Q Consensus 615 Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~-~f~~f~l~l~l~~~~~~s~~~~i~a~~ps~~~a~~v~~~~~~ 693 (820)
-+++.++++|++..++..+++++++..+.|++.|++. ++..+++.+++..++..+++.++++.+++... ++....++
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~--~~~~~~~~ 134 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPAHPPATFGFAILTSLTFMAIIQFLVALFGNVGR--FLALVLLV 134 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchH--HHHHHHHH
Confidence 3456789999999999999999999999999999975 46667777777778888999999999987643 34444455
Q ss_pred HHHHhccceecCCCCCcceeehhccChhhHHHHHHHHhhcCCCccccCCCCCCCCCCCccccccccccccccccCCCccc
Q 003437 694 LFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGPLGEVKLSKLHNTTAALLRPDCTL 773 (820)
Q Consensus 694 ~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~~~c~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~c~~ 773 (820)
+.++++|.+.|.+.+|.|++|+.|++|++|+.+++-...+.+.
T Consensus 135 ~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~------------------------------------- 177 (208)
T TIGR03062 135 LQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN------------------------------------- 177 (208)
T ss_pred HHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc-------------------------------------
Confidence 6677899999999999999999999999999999977666431
Q ss_pred chHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003437 774 IGEDIVYSMDIQIENIWFDILILLAWGVLYRLFFYLVLRFY 814 (820)
Q Consensus 774 ~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~l~L~~~ 814 (820)
....|.++++|+++.+++.++++...|.+
T Consensus 178 ------------~~~~~~~~~~L~~~~~v~~~la~~~~~~~ 206 (208)
T TIGR03062 178 ------------DGTLWQAVAVLLLILVVFLALSLLSARRK 206 (208)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 12468889999999998888888776643
|
This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057. |
| >TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-10 Score=119.22 Aligned_cols=187 Identities=13% Similarity=0.097 Sum_probs=120.6
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH-HHHHHHHHHHHHHHhhhhcHHHHHHHh--hHHHhHhcCCCC
Q 003437 539 IRTPELFLSREIVFAVMALILSSLFKNLSHHDFKTINR-LLNFYIFAVCLVFFSSNDAVPTFIQER--FIFIRETSHNAY 615 (820)
Q Consensus 539 ~Rdp~~~~~r~~~~i~~~lliG~lf~~l~~~~~~~~~~-~~g~~ff~~~~~~~~~~~~i~~f~~eR--~vf~RE~~~g~Y 615 (820)
+|||..+..-+.+-+++-++.+.+|=+-... ...+. ..+.+.+.++++.+ ...-.....|| ..+.|=+.. =.
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~er~~G~l~rl~~~-P~ 76 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSVTH--NRGATFIPVLMALAAISTAF--TGQAIAVARDRRYGALKRLGAT-PL 76 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCccCC--cchhHhhHHHHHHHHHHHHH--HHHHHHHHHHHHhCHHHHHhcC-CC
Confidence 6999999999998888877777777441111 11211 22222222221111 11112223333 344443332 24
Q ss_pred ChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch--HHHHHHHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHHH
Q 003437 616 RASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS--LLNFWMILFASLITTNAYVMLVSALVP---SYIAGYAVVIA 690 (820)
Q Consensus 616 ~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~--f~~f~l~l~l~~~~~~s~~~~i~a~~p---s~~~a~~v~~~ 690 (820)
++..|+++|++..++..++..+++. +++++.|++.. ...+++.+.+..+.+.+++.+++++.+ +.+.+..+...
T Consensus 77 ~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 77 PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGALTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 7899999999988888777655554 55677788743 333444444444555667777777664 34444667777
Q ss_pred HHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHh
Q 003437 691 TTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTN 731 (820)
Q Consensus 691 ~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~n 731 (820)
..++++++||++.|.+.+|.|++|+.+++|++|+.+++-.-
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~ 196 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQA 196 (232)
T ss_pred HHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHH
Confidence 77889999999999999999999999999999999987544
|
This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance. |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-11 Score=126.43 Aligned_cols=135 Identities=21% Similarity=0.242 Sum_probs=87.9
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
..+.+|+++.+.+|++++|+||||+|||||+++|++... ....|.....- .. .++|..| ++..+...|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~-la~~G~~v~a~-~~-------~~~~~~~---i~~~~~~~d 85 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITI-MAQIGSFVPAS-SA-------TLSIFDS---VLTRMGASD 85 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHH-HHhCCCEEEcC-ce-------EEeccce---EEEEecCcc
Confidence 358999999999999999999999999999999999431 12345543321 11 1222221 111111111
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC--hHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS--GGERRRVSIGIDIIHKPSLLFLDEPTSGL 229 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS--GGerqRv~ia~aL~~~P~lLllDEPtsgL 229 (820)
.+. .++| ..|-+|++-...-+.+|+++|+|||.+|.
T Consensus 86 ~~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT 123 (222)
T cd03287 86 SIQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGT 123 (222)
T ss_pred ccc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCC
Confidence 110 0111 13444555555556789999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhC-CcEEEEEEcCccH
Q 003437 230 DSTSAYSV-VEKVKDIART-GSIVLMTIHQPSY 260 (820)
Q Consensus 230 D~~~~~~i-~~~L~~l~~~-g~tvi~~~H~~~~ 260 (820)
|+.....+ ..+++.+.+. +.++|++||+++.
T Consensus 124 ~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l 156 (222)
T cd03287 124 STHDGIAIAYATLHYLLEEKKCLVLFVTHYPSL 156 (222)
T ss_pred ChhhHHHHHHHHHHHHHhccCCeEEEEcccHHH
Confidence 97777764 5677777775 8899999999864
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR01291 nodJ ABC-2 type transporter, NodJ family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-09 Score=116.94 Aligned_cols=194 Identities=12% Similarity=0.058 Sum_probs=132.7
Q ss_pred HHHHHHhhHHHhhcC-hHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHH-----HHHHHHHHHHHHhhhhcHHHHH
Q 003437 527 VAVLSWRTALNVIRT-PELFLSREIVFAVMALILSSLFKNLSHHDFKTINRLL-----NFYIFAVCLVFFSSNDAVPTFI 600 (820)
Q Consensus 527 ~~~L~~R~~~~~~Rd-p~~~~~r~~~~i~~~lliG~lf~~l~~~~~~~~~~~~-----g~~ff~~~~~~~~~~~~i~~f~ 600 (820)
...+.+|+++..+|+ |..+...+++-++.-+++|.+|-.... +..+. +.. |++.+++++..+ .....
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~-~~~g~-~y~~f~~pg~l~~~~~~~~~--~~~~~--- 79 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVG-SVDGV-SYAAFLAAGMVATSAMTAST--FETIY--- 79 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccCCC-CHHHHHHHHHHHHHHHHHHH--HHHHH---
Confidence 345669999999999 999999999888888888888743211 11111 111 222222222111 11111
Q ss_pred HHhhHHHhHhcCCC--------CChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCc--hHHHHHHHHHHHHHHHHHH
Q 003437 601 QERFIFIRETSHNA--------YRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHS--SLLNFWMILFASLITTNAY 670 (820)
Q Consensus 601 ~eR~vf~RE~~~g~--------Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~--~f~~f~l~l~l~~~~~~s~ 670 (820)
.++.|||.+|. -++..+.+++++.+.-..++..++...+.+++ |... +...++..+++..++..++
T Consensus 80 ---~~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~~~~l~~~~~~ll~~l~~~~l 155 (253)
T TIGR01291 80 ---ATFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEWWSLIYILPVIALTGLAFASL 155 (253)
T ss_pred ---HHHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchhhhHHHHHHHHHHHHHHHHHH
Confidence 23334444444 26788999999998777777776655555443 4333 2333334445556666789
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHh
Q 003437 671 VMLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTN 731 (820)
Q Consensus 671 ~~~i~a~~ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~n 731 (820)
|++++++.++.+....+...++.+++.+||.+.|.+.+|.|++|+.+++|+.|+.|++=..
T Consensus 156 g~~~a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~ 216 (253)
T TIGR01291 156 SMLVAALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPV 216 (253)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHH
Confidence 9999999999988777778888899999999999999999999999999999999996544
|
Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-11 Score=128.15 Aligned_cols=44 Identities=16% Similarity=0.328 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPT-----SGLDSTSAYSVVEKVKDIAR 246 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPt-----sgLD~~~~~~i~~~L~~l~~ 246 (820)
|++++.||++++.+|+++++|||| +|||+.+.+.+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999975
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-11 Score=143.97 Aligned_cols=77 Identities=22% Similarity=0.370 Sum_probs=70.2
Q ss_pred CCCChHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 197 RGVSGGERRRVSIGIDIIHK----PSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~----P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
+.+||||+||++||++++.. |++||+||||+|||+.++..+.+.|+++++ +.+||++||++.. ...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~~--~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQV--AAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHHH--HHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999975 8999999999864 3589999999
Q ss_pred eCCe
Q 003437 273 ARGR 276 (820)
Q Consensus 273 ~~G~ 276 (820)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8874
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-10 Score=129.58 Aligned_cols=174 Identities=20% Similarity=0.215 Sum_probs=113.3
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC---CC--------ccccceEEEEccC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV---TT--------SYMKMVSSYVMQD 140 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~---~~--------~~~~~~~gyv~Q~ 140 (820)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|...+ ..|.|.+.|+.- .. ..+++.+.+|.+.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~--~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~ 222 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSA--DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS 222 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence 4589999 99999999999999999999999999998753 579999965433 21 1245667888765
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHH-HHHhcCCCE
Q 003437 141 DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIG-IDIIHKPSL 219 (820)
Q Consensus 141 ~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia-~aL~~~P~l 219 (820)
+. ++.+-+.-+. ..-.+.|.+..-|- |.++-- ..|+ |.+-| |++.
T Consensus 223 ~~-----~~~~r~~~~~------------~a~~iAEyfr~~g~----~Vll~~---Dslt-----r~A~A~rEis----- 268 (438)
T PRK07721 223 DQ-----PALMRIKGAY------------TATAIAEYFRDQGL----NVMLMM---DSVT-----RVAMAQREIG----- 268 (438)
T ss_pred CC-----CHHHHHHHHH------------HHHHHHHHHHHCCC----cEEEEE---eChH-----HHHHHHHHHH-----
Confidence 43 2211111100 00012222222231 111110 0111 11111 1111
Q ss_pred EEEeCC--CCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 220 LFLDEP--TSGLDSTSAYSVVEKVKDIAR--TGS-----IVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 220 LllDEP--tsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
+.+.|| |+|+|+.....+.++++++.. +|. ||++.+||.+. .+||++..+.+|+++.+++..+
T Consensus 269 l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 123454 679999999999999999974 575 99999999874 6799999999999999997654
|
|
| >TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.7e-09 Score=112.53 Aligned_cols=202 Identities=12% Similarity=0.098 Sum_probs=135.7
Q ss_pred HHHHHHHHHhhHHHhhcChHHHHHHHHHHHHHHHHHHHHhccC-CC------CC-H-HHHHHHHHHHHHHHHHHHHhhhh
Q 003437 524 LREVAVLSWRTALNVIRTPELFLSREIVFAVMALILSSLFKNL-SH------HD-F-KTINRLLNFYIFAVCLVFFSSND 594 (820)
Q Consensus 524 ~~Q~~~L~~R~~~~~~Rdp~~~~~r~~~~i~~~lliG~lf~~l-~~------~~-~-~~~~~~~g~~ff~~~~~~~~~~~ 594 (820)
+++++.+++|+++...|||..+..-+++-+++-+++|.+|-.+ +. ++ . -...-..|++.+.+.+.++.
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~--- 77 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQ--- 77 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH---
Confidence 3688999999999999999999999999999999999988432 10 01 0 01112223333333222221
Q ss_pred cHHHHHHHh--hHHHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch---HHHHHHHHHHHHHHHHH
Q 003437 595 AVPTFIQER--FIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS---LLNFWMILFASLITTNA 669 (820)
Q Consensus 595 ~i~~f~~eR--~vf~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~---f~~f~l~l~l~~~~~~s 669 (820)
.......|| ..+.+=+... .++..+.+++++..+-..++..+++.++.++. |.+.. +......+++..++..+
T Consensus 78 ~~~~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~-g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 78 SSLSMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAALV-GVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred hhhHhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHH
Confidence 111222232 2333333333 47788999999999888777766655554433 55432 22223334445566678
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHhccceecCCCC---CcceeehhccChhhHHHHHHHH
Q 003437 670 YVMLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHI---PPYWRWLHYISAIKYPFEALLT 730 (820)
Q Consensus 670 ~~~~i~a~~ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~i---P~~~~W~~yiSp~~Ya~eal~~ 730 (820)
+|.++++++++.+....+..+++.+++.+||.+.|.+.+ |.|++|+.++||+.|..|++=.
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~ 219 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRF 219 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHH
Confidence 999999999998777777777777888999999998766 8899999999999999988753
|
Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis. |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-11 Score=149.16 Aligned_cols=81 Identities=20% Similarity=0.237 Sum_probs=64.8
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVE-KVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
..+|+|++|++.|++++ .+|+++|+|||++|+|+.....+.. +|..+.+.|.++|++||+++. ....+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKEL-KALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCeE-EE
Confidence 36999999999999988 8999999999999999999988865 677777789999999999764 33345554443 45
Q ss_pred eEEEE
Q 003437 276 RLVYM 280 (820)
Q Consensus 276 ~iv~~ 280 (820)
.+.+.
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55553
|
|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.7e-11 Score=139.51 Aligned_cols=77 Identities=21% Similarity=0.383 Sum_probs=69.7
Q ss_pred CCCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 197 RGVSGGERRRVSIGIDIIH----KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~----~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
+.+||||+|||+||++++. +|+++|+|||++|||..++..+.+.|+++++ +.+|||+||+|. +..+||+.+++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 3589999999999999997 5899999999999999999999999999975 699999999996 45789999999
Q ss_pred eCCe
Q 003437 273 ARGR 276 (820)
Q Consensus 273 ~~G~ 276 (820)
.++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8753
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.4e-11 Score=149.58 Aligned_cols=80 Identities=23% Similarity=0.316 Sum_probs=74.0
Q ss_pred CCCCCChHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHh
Q 003437 195 GRRGVSGGERRRVSIGIDIIH----------KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQM 264 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~----------~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 264 (820)
.++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+.+.+.|++|++|||++.. ...
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~-~~~ 1025 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEF-RER 1025 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH-HHh
Confidence 456899999999999999985 799999999999999999999999999998889999999999985 788
Q ss_pred hcCEEEEEeCC
Q 003437 265 LLDRIIVLARG 275 (820)
Q Consensus 265 ~~D~v~lL~~G 275 (820)
++|+|.|++.|
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 99999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.3e-11 Score=141.03 Aligned_cols=78 Identities=22% Similarity=0.382 Sum_probs=69.2
Q ss_pred CCCCChHHHHHHHHHHHHh----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHh
Q 003437 196 RRGVSGGERRRVSIGIDII----------HKPSLLFLDEPT-SGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQM 264 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~----------~~P~lLllDEPt-sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 264 (820)
+..||||||||++||++|+ .+|++||||||| ++||+.+...+.+.|+++ .|.+||++||++. ...
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~~ 541 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DPQ 541 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--chh
Confidence 3679999999999999987 599999999998 789999999999999998 5899999999975 446
Q ss_pred hcCEEEEEeC-CeE
Q 003437 265 LLDRIIVLAR-GRL 277 (820)
Q Consensus 265 ~~D~v~lL~~-G~i 277 (820)
.||++++|.+ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 7999999986 543
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.7e-10 Score=118.63 Aligned_cols=135 Identities=19% Similarity=0.215 Sum_probs=84.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHH-HHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHh
Q 003437 81 QAIRGEIMAIMGPSGAGKSTF-LDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEV 159 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTL-l~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~ 159 (820)
-+++|++++|.|+|||||||| ++++++...+ | ..+.|+..+ .|..+.+.....+
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~----g---------------~~~~yi~~e------~~~~~~~~~~~~~ 74 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQN----G---------------YSVSYVSTQ------LTTTEFIKQMMSL 74 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC----C---------------CcEEEEeCC------CCHHHHHHHHHHh
Confidence 478899999999999999999 6898886532 2 112455422 2555555544332
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCC----CH
Q 003437 160 RLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII----HKPSLLFLDEPTSGL----DS 231 (820)
Q Consensus 160 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~----~~P~lLllDEPtsgL----D~ 231 (820)
. ... ++.... |.-...+.. ..+|+++.++-.+.+.+- .+|+++++||||+++ |+
T Consensus 75 g----~~~-------~~~~~~-~~l~~~~~~------~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~ 136 (230)
T PRK08533 75 G----YDI-------NKKLIS-GKLLYIPVY------PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASE 136 (230)
T ss_pred C----Cch-------HHHhhc-CcEEEEEec------ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcch
Confidence 2 111 111110 100001110 136777655544444332 369999999999999 88
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEEcCc
Q 003437 232 TSAYSVVEKVKDIARTGSIVLMTIHQP 258 (820)
Q Consensus 232 ~~~~~i~~~L~~l~~~g~tvi~~~H~~ 258 (820)
....++++.++.+++.|.|+++++|..
T Consensus 137 ~~~~~l~~~l~~l~~~g~tvi~t~~~~ 163 (230)
T PRK08533 137 VAVNDLMAFFKRISSLNKVIILTANPK 163 (230)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence 888999999999988888777765543
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.8e-10 Score=131.55 Aligned_cols=137 Identities=24% Similarity=0.376 Sum_probs=103.7
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH------HHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHhcCC
Q 003437 145 PMLTVFETFMFAAEVRLPPSISRDEKKKRVYEL------LDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDIIHKP 217 (820)
Q Consensus 145 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~------l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P 217 (820)
..|++.|.+.|...+.+.. ....-.+..+.++ |..+||.-. +++. ..+|||||.||+-+|..|=++=
T Consensus 427 ~~msi~~~~~f~~~l~l~~-~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~-----a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 427 SEMSIADALEFFENLKLSE-KEKKIAEPILKEIKERLGFLVDVGLGYLTLSRS-----AGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred hhccHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHHHcCcCccccccc-----CCCcChhHHHHHHHHHHhcccc
Confidence 4678888888887665321 1111112222222 344577643 3333 3479999999999999998763
Q ss_pred -C-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE------eCCeEEEEcCccchhhh
Q 003437 218 -S-LLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL------ARGRLVYMGSPVALPAH 289 (820)
Q Consensus 218 -~-lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~~ 289 (820)
. +.+||||+-||-+..-.++++.|++|.+.|-|+|++.||++ +...+|+|+-| ..|+|++.|++++++..
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed--ti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~ 578 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED--TIRAADHIIDIGPGAGEHGGEIVAEGTPEELLAN 578 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH--HHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhC
Confidence 3 67999999999999999999999999999999999999986 45679999988 46899999999998754
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.14 E-value=8e-12 Score=132.17 Aligned_cols=75 Identities=23% Similarity=0.301 Sum_probs=63.0
Q ss_pred CCCChHH--------HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCcEEEEEEcCccHHHHhhcC
Q 003437 197 RGVSGGE--------RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYS-VVEKVKDIARTGSIVLMTIHQPSYRIQMLLD 267 (820)
Q Consensus 197 ~~LSGGe--------rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~-i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 267 (820)
+.+|||+ +||+++|+++..+++|.++ ||+.+|..+... ++ +.++...+.|.|+.+|+... ...+|
T Consensus 128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~--~~~~p 201 (249)
T cd01128 128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAE--RRIFP 201 (249)
T ss_pred CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhh--CCCCC
Confidence 4589999 9999999999999999999 999999655443 54 55555568899999999863 56799
Q ss_pred EEEEEeCCeE
Q 003437 268 RIIVLARGRL 277 (820)
Q Consensus 268 ~v~lL~~G~i 277 (820)
.|.+|+.|++
T Consensus 202 aI~vl~s~sr 211 (249)
T cd01128 202 AIDILKSGTR 211 (249)
T ss_pred eEEEcCCCCc
Confidence 9999999987
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.8e-11 Score=122.41 Aligned_cols=135 Identities=23% Similarity=0.319 Sum_probs=89.6
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
..+-+|+++..++|++++|.||||+|||||++++++..... .. |-.+.... ..++++ +.++..+...|
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la-~~------G~~vpa~~--~~i~~~---~~i~~~~~~~d 84 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA-QM------GMDVPAKS--MRLSLV---DRIFTRIGARD 84 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH-Hc------CCccCccc--cEeccc---cEEEEecCccc
Confidence 35899999999999999999999999999999999863110 00 11111100 011111 12222222222
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC--hHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS--GGERRRVSIGIDIIHKPSLLFLDEPTSGL 229 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS--GGerqRv~ia~aL~~~P~lLllDEPtsgL 229 (820)
++.. ++| .-|-+|++-....+.+|+++|+|||.+|+
T Consensus 85 ~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt 122 (218)
T cd03286 85 DIMK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGT 122 (218)
T ss_pred cccc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCC
Confidence 2211 111 13445555555556789999999999999
Q ss_pred CHHHHHHHHHH-HHHHHhC-CcEEEEEEcCccH
Q 003437 230 DSTSAYSVVEK-VKDIART-GSIVLMTIHQPSY 260 (820)
Q Consensus 230 D~~~~~~i~~~-L~~l~~~-g~tvi~~~H~~~~ 260 (820)
|+.....+... ++.+.+. +.++|++||+++.
T Consensus 123 ~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el 155 (218)
T cd03286 123 STHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSL 155 (218)
T ss_pred CchHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 99999999888 7778775 8999999999864
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-10 Score=119.30 Aligned_cols=63 Identities=27% Similarity=0.479 Sum_probs=54.2
Q ss_pred CCCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCcc
Q 003437 197 RGVSGGERRRVSIGIDIIHKP---SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P---~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 259 (820)
..+|.|+||.+.|+..|...+ .++++|||-++|+|..+..+++.|+++.+.+.-||++||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 457999999999999988876 899999999999999999999999888776788999999985
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=110.70 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=64.3
Q ss_pred CCCChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCcEEEEEEcCccH-------
Q 003437 197 RGVSGGERR------RVSIGIDIIHKPSLLFLDEPTSGLD---STSAYSVVEKVKDIARTGSIVLMTIHQPSY------- 260 (820)
Q Consensus 197 ~~LSGGerq------Rv~ia~aL~~~P~lLllDEPtsgLD---~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~------- 260 (820)
..+|+|++| +.........+|+++++|||++.+| ......+.++++.+++.|.|+|+++|+...
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~ 149 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGG 149 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCc
Confidence 468999998 5555555677999999999999999 888888999999998889999999998753
Q ss_pred -HHHhhcCEEEEEe
Q 003437 261 -RIQMLLDRIIVLA 273 (820)
Q Consensus 261 -~i~~~~D~v~lL~ 273 (820)
.+..+||.++.|+
T Consensus 150 ~~~~~~aD~ii~l~ 163 (187)
T cd01124 150 GDVEYLVDGVIRLR 163 (187)
T ss_pred CceeEeeeEEEEEE
Confidence 1567789998886
|
A related protein is found in archaea. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.1e-11 Score=118.55 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=63.8
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEP--TSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEP--tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.+||+++-++.+++..+.+|++|++||| +.++| ..+.+.|.++.+.|.++|+++|+.. +...+|++..+.+|
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~~--~~~~~~~i~~~~~~ 151 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRRS--VHPFVQEIKSRPGG 151 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECchh--hHHHHHHHhccCCc
Confidence 5999999999999999999999999995 43444 4456777777677999999999853 55679999999999
Q ss_pred eEEEE
Q 003437 276 RLVYM 280 (820)
Q Consensus 276 ~iv~~ 280 (820)
++++.
T Consensus 152 ~i~~~ 156 (174)
T PRK13695 152 RVYEL 156 (174)
T ss_pred EEEEE
Confidence 98765
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.2e-10 Score=121.08 Aligned_cols=142 Identities=15% Similarity=0.190 Sum_probs=94.6
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe-CCCccccceEEEEccCCC-CCCCCCHHHHHHH
Q 003437 78 ISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP-VTTSYMKMVSSYVMQDDQ-LFPMLTVFETFMF 155 (820)
Q Consensus 78 vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~-~~~~~~~~~~gyv~Q~~~-l~~~lTV~e~l~~ 155 (820)
+++.++.|+.++|.||+|||||||+++|++.+++ ..|.+.++... +.. ..+..+.++.+... -..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~--~~~iv~ied~~El~~-~~~~~~~l~~~~~~~~~~---------- 203 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPK--DERIITIEDTREIFL-PHPNYVHLFYSKGGQGLA---------- 203 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCc--cccEEEEcCccccCC-CCCCEEEEEecCCCCCcC----------
Confidence 5577889999999999999999999999998853 45777775311 100 01112222211100 000
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 003437 156 AAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAY 235 (820)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~ 235 (820)
.++- .-.+..+|-.+|+++++|||.+ .
T Consensus 204 ------------------------------------------~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~ 230 (308)
T TIGR02788 204 ------------------------------------------KVTP----KDLLQSCLRMRPDRIILGELRG-------D 230 (308)
T ss_pred ------------------------------------------ccCH----HHHHHHHhcCCCCeEEEeccCC-------H
Confidence 0111 1234556778999999999996 4
Q ss_pred HHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchh
Q 003437 236 SVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 236 ~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
+++++|+.+...+.+++.|+|..+ .....||+..|..|++...|.+.+..
T Consensus 231 e~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 231 EAFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 566777777643446799999987 35568999999999888888776554
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK15066 inner membrane transport permease; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-07 Score=100.73 Aligned_cols=241 Identities=12% Similarity=0.153 Sum_probs=146.1
Q ss_pred HHHHHHHHHHhhHHHhhcChHH-HHHHHHHHHHHHHHHHHHhcc-CCC-CCHHH-HHHHHHHHHHHHHHHHHhhhhcHHH
Q 003437 523 WLREVAVLSWRTALNVIRTPEL-FLSREIVFAVMALILSSLFKN-LSH-HDFKT-INRLLNFYIFAVCLVFFSSNDAVPT 598 (820)
Q Consensus 523 ~~~Q~~~L~~R~~~~~~Rdp~~-~~~r~~~~i~~~lliG~lf~~-l~~-~~~~~-~~~~~g~~ff~~~~~~~~~~~~i~~ 598 (820)
+|+-++.+.+|+++...||+.. +..-+++.++..+++|.++-. .+. .+.+- ..-..|++.+..+... .+.....
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~--~~~~~~~ 83 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNS--YSNVASS 83 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 4678889999999999999854 444455666677777776532 111 11111 1111132222211111 1112222
Q ss_pred HHHHhhH-HHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch-HHHHHHHHHHHHHHHHHHHHHHHH
Q 003437 599 FIQERFI-FIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS-LLNFWMILFASLITTNAYVMLVSA 676 (820)
Q Consensus 599 f~~eR~v-f~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~-f~~f~l~l~l~~~~~~s~~~~i~a 676 (820)
+..+|.. ..++-..---++..+.+++++...-..++..++..++.+...|.... ...++..+++..++....+.++++
T Consensus 84 i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~~~~~~l~~~ll~~~~f~~~gl~~a~ 163 (257)
T PRK15066 84 FFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVHHWGIVLLTVLLTAILFSLGGLINAV 163 (257)
T ss_pred HHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333311 01111222357788999999987766666666555555554466543 222222222222323344778888
Q ss_pred hcchHHHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHhhcCCCccccCCCCCCCCCCCccccc
Q 003437 677 LVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGPLGEVKL 756 (820)
Q Consensus 677 ~~ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~~~c~~~~~~~~~p~p~~~~~~ 756 (820)
+.++......+...++.+++..||.+.|.+++|.|++|+.++||+.|..|++=..-+++
T Consensus 164 ~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g~--------------------- 222 (257)
T PRK15066 164 FAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLGI--------------------- 222 (257)
T ss_pred HHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcCC---------------------
Confidence 88887776777777888889999999999999999999999999999999875332211
Q ss_pred cccccccccccCCCcccchHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003437 757 SKLHNTTAALLRPDCTLIGEDIVYSMDIQIENIWFDILILLAWGVLYRLFFYLVLRFY 814 (820)
Q Consensus 757 ~~~~~~~~~~~~~~c~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~l~L~~~ 814 (820)
.....|.++++++++.+++.+++....|..
T Consensus 223 ----------------------------~~~~~~~~l~~l~~~~~v~~~la~~~~~r~ 252 (257)
T PRK15066 223 ----------------------------SDVPLWLAFAVLLVFIVVLYLLAWYLLERG 252 (257)
T ss_pred ----------------------------CCccHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 011357788899999888877777766543
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-09 Score=137.39 Aligned_cols=80 Identities=24% Similarity=0.308 Sum_probs=70.9
Q ss_pred CCCCCCChHHHHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhh
Q 003437 194 EGRRGVSGGERRRVSIGIDIIH--------KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQML 265 (820)
Q Consensus 194 ~~~~~LSGGerqRv~ia~aL~~--------~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 265 (820)
..+++|||||++|++||++|+. +|++||+||||++||+.+...+++.|..+.+.|+||++|||.... ..++
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l-~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAM-KERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHH-HHhc
Confidence 3456899999999999999995 899999999999999999999999999999889999999998764 5666
Q ss_pred cCEEEEEeC
Q 003437 266 LDRIIVLAR 274 (820)
Q Consensus 266 ~D~v~lL~~ 274 (820)
..+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 677777764
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-09 Score=136.99 Aligned_cols=78 Identities=27% Similarity=0.356 Sum_probs=68.8
Q ss_pred CCCCCChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCE
Q 003437 195 GRRGVSGGERR------RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 195 ~~~~LSGGerq------Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 268 (820)
.+..|||||++ |++||++++.+|+++|+||||++||+..+..+.++|..++..+.+||++||++. +...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCCe
Confidence 35679999999 555666788999999999999999999999999999998877889999999985 5678999
Q ss_pred EEEEeC
Q 003437 269 IIVLAR 274 (820)
Q Consensus 269 v~lL~~ 274 (820)
+++|..
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999984
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.8e-09 Score=127.56 Aligned_cols=69 Identities=22% Similarity=0.176 Sum_probs=60.9
Q ss_pred hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHH--------HhhcCEEEEEeCCeEEEEcC
Q 003437 214 IHKPSLLFLDEPTSGL-DSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRI--------QMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 214 ~~~P~lLllDEPtsgL-D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i--------~~~~D~v~lL~~G~iv~~G~ 282 (820)
..+|+++++|||+.+| |+..+..+.+.++.+.+.|.++|++||+++... .+.||..++|.+|++...|.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 5799999999999999 799999999999999988999999999997532 25799999999999876664
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.8e-09 Score=104.06 Aligned_cols=62 Identities=19% Similarity=0.194 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTS----------GLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPts----------gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
.+.++.+++..+.+...+|+++++||+++ ++|......+.+++....+.+.|+|+++|.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 45666678888999999999999999994 455555666666666655569999999998864
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.5e-09 Score=118.03 Aligned_cols=156 Identities=21% Similarity=0.176 Sum_probs=108.3
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
.++++++ +.+.+|+.++|+|+||+|||||+++|+|... ++.|.|.+.|+. . .+|.|
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~--~~~gvI~~iGer----------------g-----~ev~e 199 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK--ADINVISLVGER----------------G-----REVKD 199 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC--CCeEEEEeCCCC----------------c-----ccHHH
Confidence 3578885 9999999999999999999999999999764 345665554432 1 35666
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh-------cCCCEEEEeC
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII-------HKPSLLFLDE 224 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~-------~~P~lLllDE 224 (820)
.+.... ..-|+.+. ..+ ....+-|.|+|+|++.+.+.+ .++-+|++|+
T Consensus 200 ~~~~~l---------------------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDs 254 (432)
T PRK06793 200 FIRKEL---------------------GEEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDS 254 (432)
T ss_pred HHHHHh---------------------hhccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 543211 11122211 011 123468999999999998887 7899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 225 PTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 225 PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
||+..|+. .++-..+.+....|.+..+.+|.+. + ++|.-....|.|...++.
T Consensus 255 lTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~--L---~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 255 VTRFADAR--RSVDIAVKELPIGGKTLLMESYMKK--L---LERSGKTQKGSITGIYTV 306 (432)
T ss_pred hHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchh--H---HHHhccCCCcceEEEEEE
Confidence 99999996 5555566666545888888888532 3 344444578888776654
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-08 Score=98.35 Aligned_cols=63 Identities=21% Similarity=0.409 Sum_probs=52.6
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
...|-||-=---+.+. .++--+.|||||-++|.+.-+.+++..|+.+++.|.-+|+.||.|-.
T Consensus 128 h~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiL 190 (233)
T COG3910 128 HHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPIL 190 (233)
T ss_pred hhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhh
Confidence 4578998644333333 46778999999999999999999999999999999999999999853
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.7e-09 Score=129.83 Aligned_cols=77 Identities=25% Similarity=0.326 Sum_probs=66.8
Q ss_pred CCCCCChHHHHHHHH------HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-cEEEEEEcCccHHHHhh
Q 003437 195 GRRGVSGGERRRVSI------GIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA-RT-G-SIVLMTIHQPSYRIQML 265 (820)
Q Consensus 195 ~~~~LSGGerqRv~i------a~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~-~~-g-~tvi~~~H~~~~~i~~~ 265 (820)
.+..||||||+|++| |++++.+|++++|||||++||+.....+.++|+... .. | .+||++||++.. ...
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~--~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHREL--LSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHH--HHh
Confidence 356899999999975 589999999999999999999999999999998654 33 3 489999999864 468
Q ss_pred cCEEEEEe
Q 003437 266 LDRIIVLA 273 (820)
Q Consensus 266 ~D~v~lL~ 273 (820)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999998
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.2e-09 Score=133.77 Aligned_cols=69 Identities=22% Similarity=0.393 Sum_probs=62.0
Q ss_pred CCCChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEEEcCccHHHHhh
Q 003437 197 RGVSGGERR------RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-----TGSIVLMTIHQPSYRIQML 265 (820)
Q Consensus 197 ~~LSGGerq------Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tvi~~~H~~~~~i~~~ 265 (820)
..||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|..+.. .|.+||++||++.. +..+
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~-~~~~ 1276 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDF-VELL 1276 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHH-HHHH
Confidence 469999999 99999999999999999999999999999999999988742 37899999999975 6665
Q ss_pred c
Q 003437 266 L 266 (820)
Q Consensus 266 ~ 266 (820)
|
T Consensus 1277 ~ 1277 (1311)
T TIGR00606 1277 G 1277 (1311)
T ss_pred h
Confidence 4
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.4e-07 Score=94.89 Aligned_cols=167 Identities=23% Similarity=0.284 Sum_probs=119.7
Q ss_pred HhhHHHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccC--CCchHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Q 003437 602 ERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLK--LHSSLLNFWMILFASLITTNAYVMLVS-ALV 678 (820)
Q Consensus 602 eR~vf~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~G--l~~~f~~f~l~l~l~~~~~~s~~~~i~-a~~ 678 (820)
++..+.|=..+-..+ ..+++++.+...-...+...+...++.+..| ...++..+...+.+..+...+++.+++ ...
T Consensus 116 ~~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 194 (286)
T COG0842 116 EFGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLLLSTFAK 194 (286)
T ss_pred hhCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444443 5566666666666665555555555666666 334555555555666666677777666 366
Q ss_pred chHHHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHhhcCCCccccCCCCCCCCCCCccccccc
Q 003437 679 PSYIAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKGKECYNGAPGDLSPGPLGEVKLSK 758 (820)
Q Consensus 679 ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~~~c~~~~~~~~~p~p~~~~~~~~ 758 (820)
.+.+.+.++......++..++|.+.|.+.+|.|++|+.+++|..|+.+++-.....+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~--------------------- 253 (286)
T COG0842 195 SQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR--------------------- 253 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc---------------------
Confidence 66777777887888889999999999999999999999999999999998776665420
Q ss_pred cccccccccCCCcccchHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 003437 759 LHNTTAALLRPDCTLIGEDIVYSMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYSKN 817 (820)
Q Consensus 759 ~~~~~~~~~~~~c~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~l~L~~~~~~ 817 (820)
....|.++++++++.+++.+++.+.++...+.
T Consensus 254 ---------------------------~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 254 ---------------------------NDGIWISLLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred ---------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 01278899999999999999999888877654
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.1e-08 Score=101.54 Aligned_cols=161 Identities=19% Similarity=0.255 Sum_probs=96.0
Q ss_pred ceeee-eEEEeCCcEEEEEcCCCCcHHHHHHHHH-cCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 74 LLHDI-SGQAIRGEIMAIMGPSGAGKSTFLDALA-GRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 74 iL~~v-s~~i~~Ge~~allGpnGsGKSTLl~~L~-G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
-|+.+ .+=+++|.++.|.|++|+|||||...++ +.... | +.+.|+..+. +..+
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~----g---------------~~~~y~~~e~------~~~~ 67 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ----G---------------KKVYVITTEN------TSKS 67 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC----C---------------CEEEEEEcCC------CHHH
Confidence 45554 5678999999999999999999998875 21110 1 2234554321 3333
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhc--CCCEEEEeCCCCC-
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIH--KPSLLFLDEPTSG- 228 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~--~P~lLllDEPtsg- 228 (820)
.+.-...+ +++.. +.+. .|.....+..+. .....|.++++.+.....++. +|+++++||||+.
T Consensus 68 ~~~~~~~~----g~~~~-------~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 68 YLKQMESV----KIDIS-------DFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred HHHHHHHC----CCChh-------HHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 22211111 11110 0000 011111111111 012356788999999999997 9999999999964
Q ss_pred --CCHHHHHHHHHHHHHHHhCCcEEEEEEcCccH------HHHhhcCEEEEEe
Q 003437 229 --LDSTSAYSVVEKVKDIARTGSIVLMTIHQPSY------RIQMLLDRIIVLA 273 (820)
Q Consensus 229 --LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~------~i~~~~D~v~lL~ 273 (820)
+|......+++.++.+++.|.|+++++|+... .+..++|-++.|+
T Consensus 134 ~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 134 TYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred hcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 55555566666677777789999999998753 1344566666665
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.3e-09 Score=131.87 Aligned_cols=76 Identities=16% Similarity=0.274 Sum_probs=66.8
Q ss_pred CCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEE
Q 003437 195 GRRGVSGGERRRVSIGIDII----HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRII 270 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~----~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~ 270 (820)
.+..||||||+|++||++++ .+|+++||||||++||+.+...+.++|+.+++ +.++|++||++.. ...||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhHe
Confidence 45689999999999999984 67799999999999999999999999999875 4789999999874 46799987
Q ss_pred EEe
Q 003437 271 VLA 273 (820)
Q Consensus 271 lL~ 273 (820)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 654
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.7e-08 Score=101.15 Aligned_cols=56 Identities=25% Similarity=0.404 Sum_probs=42.4
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 208 ~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
+|+++|..+|+++++|||. |......++ +.+..|..++.++|.++. ....||++.|
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l 121 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNSA--AKTIDRIIDV 121 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCcH--HHHHhHHHhh
Confidence 4778899999999999996 665433333 345679999999999874 3567887666
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.72 E-value=9e-08 Score=101.15 Aligned_cols=136 Identities=27% Similarity=0.415 Sum_probs=87.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECC-EeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG-KPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP 163 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G-~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~ 163 (820)
|.+..|+||+|+|||||+-.++=-.. +|.=.+.+ .... ....+-|+.=++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va----~G~~~~g~~~~~~---~~~~Vlyi~~Ed---------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA----LGKNLFGGGLKVT---EPGRVVYLSAED---------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh----cCccccCCccccC---CCceEEEEECCC----------------------
Confidence 67889999999999999977763221 12211111 1111 122344443221
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHH----------------HHhcCCCEEEEeCCCC
Q 003437 164 SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGI----------------DIIHKPSLLFLDEPTS 227 (820)
Q Consensus 164 ~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~----------------aL~~~P~lLllDEPts 227 (820)
+.++..+|+..+...+++.+..+... +.+|+.|++.+++ ....+|+++++| |++
T Consensus 52 --~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~ 121 (239)
T cd01125 52 --PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLV 121 (239)
T ss_pred --CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChH
Confidence 23344566777777776655444332 2245555555443 335799999999 775
Q ss_pred ------CCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCcc
Q 003437 228 ------GLDSTSAYSVVEKVKDIART-GSIVLMTIHQPS 259 (820)
Q Consensus 228 ------gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~ 259 (820)
.+|+.....+++.|++++++ |.+||+++|...
T Consensus 122 ~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 122 SFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999999864 999999999874
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.7e-08 Score=112.02 Aligned_cols=152 Identities=22% Similarity=0.259 Sum_probs=97.1
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
.++++.+..+..|++++++||||+||||++..|++.+.. ..|. +.+++|.+|. ...++.|+
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~--~~G~--------------~kV~LI~~Dt---~RigA~EQ 304 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVM--RHGA--------------SKVALLTTDS---YRIGGHEQ 304 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHH--hcCC--------------CeEEEEeCCc---cchhHHHH
Confidence 356677777889999999999999999999999997531 1221 2467888876 34689999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH-HHHHHHHHhcCC-----CEEEEeCCC
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR-RVSIGIDIIHKP-----SLLFLDEPT 226 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq-Rv~ia~aL~~~P-----~lLllDEPt 226 (820)
|.+.++... ++........+..+...+|.+....+|.. ...+++. .+.-..+++.++ .+|+||.++
T Consensus 305 Lr~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLIDT-----aGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~ 376 (484)
T PRK06995 305 LRIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLIDT-----IGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATS 376 (484)
T ss_pred HHHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEeCC-----CCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCC
Confidence 999887642 22222222334455666777766666643 2222322 234444455554 689999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 003437 227 SGLDSTSAYSVVEKVKDIARTGSIVLMTIHQ 257 (820)
Q Consensus 227 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 257 (820)
.+ ..+.+.++.....+.+-++.|+-
T Consensus 377 ~~------~~l~~i~~~f~~~~~~g~IlTKl 401 (484)
T PRK06995 377 HG------DTLNEVVQAYRGPGLAGCILTKL 401 (484)
T ss_pred cH------HHHHHHHHHhccCCCCEEEEeCC
Confidence 88 33455555555555655555553
|
|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.4e-08 Score=122.36 Aligned_cols=78 Identities=29% Similarity=0.429 Sum_probs=67.4
Q ss_pred CCCCChHHHH------HHHHHHHHhcC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEEcCccHHH
Q 003437 196 RRGVSGGERR------RVSIGIDIIHK-----P-SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGS-IVLMTIHQPSYRI 262 (820)
Q Consensus 196 ~~~LSGGerq------Rv~ia~aL~~~-----P-~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~-tvi~~~H~~~~~i 262 (820)
+..||||||+ |++|+++++.+ | +++|+||||++||+.....++++|+.+...|. +||++||++.. +
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~-~ 857 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDEL-V 857 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHH-H
Confidence 4689999999 89999998864 3 67999999999999999999999999986664 79999999874 3
Q ss_pred HhhcCEEEEEeCC
Q 003437 263 QMLLDRIIVLARG 275 (820)
Q Consensus 263 ~~~~D~v~lL~~G 275 (820)
..||+++.|...
T Consensus 858 -~~ad~~~~~~~~ 869 (880)
T PRK02224 858 -GAADDLVRVEKD 869 (880)
T ss_pred -HhcCeeEEeecC
Confidence 579999999643
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.65 E-value=4e-08 Score=126.19 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=67.5
Q ss_pred CCCCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEE
Q 003437 196 RRGVSGGERRRVSIGIDIIH----KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~----~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
+..||||||++++||++|+. +|+++|||||+++||+.....+.++|+++++ +..+|++||++. +...||+++.
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~~ 1148 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAIG 1148 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeEe
Confidence 45899999999999999985 7799999999999999999999999999865 478999999985 4578999987
Q ss_pred EeC
Q 003437 272 LAR 274 (820)
Q Consensus 272 L~~ 274 (820)
+..
T Consensus 1149 ~~~ 1151 (1164)
T TIGR02169 1149 VTM 1151 (1164)
T ss_pred EEE
Confidence 753
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.2e-07 Score=83.00 Aligned_cols=60 Identities=27% Similarity=0.280 Sum_probs=47.1
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH------HHHHHHhCCcEEEEEEcC
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVE------KVKDIARTGSIVLMTIHQ 257 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~------~L~~l~~~g~tvi~~~H~ 257 (820)
...+++..+..+.++--.+|.++++||+..-.+......... ........+..+|+++|.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 477788888888888888899999999999999998887765 223333457888888883
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-08 Score=112.86 Aligned_cols=52 Identities=21% Similarity=0.310 Sum_probs=45.0
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCce-EEEECCEeCCC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEG-SVRIDGKPVTT 127 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G-~I~i~G~~~~~ 127 (820)
..+|++||+++++||+++|+|||||||||||+ +|+..+ ++| +|.++|.++..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~--~sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKF--SEGYEFFLDATHSFS 71 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCC--CCCCEEEECCEECCC
Confidence 35899999999999999999999999999999 666543 456 89999998854
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >TIGR01248 drrC daunorubicin resistance protein C | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-06 Score=84.45 Aligned_cols=128 Identities=15% Similarity=-0.036 Sum_probs=89.2
Q ss_pred HHHHhhHHHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCCch--HHHHHHHH---HHHHHHHHHHHHH
Q 003437 599 FIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLHSS--LLNFWMIL---FASLITTNAYVML 673 (820)
Q Consensus 599 f~~eR~vf~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~--f~~f~l~l---~l~~~~~~s~~~~ 673 (820)
.-.|+.++.|-+..-. +++.|+++|++...-..+++.++..++.+++ |++.. +...++++ .+..+....++..
T Consensus 14 ~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~~-g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~ 91 (152)
T TIGR01248 14 IDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALAL-GFRFRNGVAAALLFLLIPSIFGIAFAALVMA 91 (152)
T ss_pred HHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777666555 6899999999999999999988877777644 87744 22222222 2222233344455
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHH
Q 003437 674 VSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALL 729 (820)
Q Consensus 674 i~a~~ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~ 729 (820)
++...++.+. ......+++++++.+|.+.|.+++|.|++|+-+++|+.|+.+++=
T Consensus 92 ~a~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 92 MALRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 5544555443 333455667778888999999999999999999999999999873
|
The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters. |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.3e-06 Score=108.10 Aligned_cols=52 Identities=23% Similarity=0.266 Sum_probs=48.3
Q ss_pred HHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 209 IGIDIIHKPSLLFLDEPTSGL-DSTSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 209 ia~aL~~~P~lLllDEPtsgL-D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d 732 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD 732 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 577788999999999999999 7999999999999999889999999999985
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-07 Score=110.65 Aligned_cols=167 Identities=17% Similarity=0.185 Sum_probs=99.4
Q ss_pred ceeee-eEEEeCCcEEEEEcCCCCcHHHHHHHH--HcCCCCCCCceEEEECCEeCCCcc--ccceEEEEccCCCCCCCCC
Q 003437 74 LLHDI-SGQAIRGEIMAIMGPSGAGKSTFLDAL--AGRIAQGSLEGSVRIDGKPVTTSY--MKMVSSYVMQDDQLFPMLT 148 (820)
Q Consensus 74 iL~~v-s~~i~~Ge~~allGpnGsGKSTLl~~L--~G~~~~~~~~G~I~i~G~~~~~~~--~~~~~gyv~Q~~~l~~~lT 148 (820)
-|+.+ .+=+.+|..+.|.|++|||||||..-. .|....+ +.-+++...+-.... ..+..|+-.++..--.
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g--e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g--- 83 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD--EPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG--- 83 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC---
Confidence 46665 567899999999999999999998765 3543211 244555443211110 0111233222110000
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHH--HHHhcCCCEEEEeCCC
Q 003437 149 VFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIG--IDIIHKPSLLFLDEPT 226 (820)
Q Consensus 149 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia--~aL~~~P~lLllDEPt 226 (820)
++.+ + ..... .....+++.+++.+..+.... .+|+|++|||.|+ .+|...|+..
T Consensus 84 ---~l~~---~----~~~~~---~~~~~~~~~~~l~~~l~~i~~-----~ls~g~~qRVvIDSl~aL~~~~~~~------ 139 (484)
T TIGR02655 84 ---KLFI---L----DASPD---PEGQDVVGGFDLSALIERINY-----AIRKYKAKRVSIDSVTAVFQQYDAV------ 139 (484)
T ss_pred ---ceEE---E----ecCch---hccccccccCCHHHHHHHHHH-----HHHHhCCcEEEEeehhHhhhhcCch------
Confidence 0000 0 00000 001123445555555555543 5999999999999 6666665543
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHH--------HHhhcCEEEEEe
Q 003437 227 SGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYR--------IQMLLDRIIVLA 273 (820)
Q Consensus 227 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~--------i~~~~D~v~lL~ 273 (820)
...+..+.++++.+++.|.|+|+++|++... ...++|.|+.|+
T Consensus 140 ----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 ----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677889999999988899999999987521 145789999887
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.7e-07 Score=102.35 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=55.5
Q ss_pred CCChHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 198 GVSGGERRRVSIGIDIIH---------KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~---------~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
.+|.||+|++.||..|+. +|+|||||||+++||+..+..+++.|++. |..|++|+|++..
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~~ 343 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLDH 343 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChhh
Confidence 589999999999999999 99999999999999999999999999764 6799999998753
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.9e-07 Score=90.77 Aligned_cols=83 Identities=18% Similarity=0.080 Sum_probs=59.3
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCC--CCCCCCCHHH
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDD--QLFPMLTVFE 151 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~--~l~~~lTV~e 151 (820)
..+=+.+.+++|+.++|+||||||||||+++|+|+++ +..|.|.+.+..-.....+..++++.|.+ ...+..++.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~--~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP--PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH
Confidence 3444556788999999999999999999999999885 45799999875322222234456666543 3456678888
Q ss_pred HHHHHHH
Q 003437 152 TFMFAAE 158 (820)
Q Consensus 152 ~l~~~~~ 158 (820)
.+....+
T Consensus 92 ~l~~~lR 98 (186)
T cd01130 92 LLRSALR 98 (186)
T ss_pred HHHHHhc
Confidence 7766544
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.9e-07 Score=104.23 Aligned_cols=88 Identities=18% Similarity=0.194 Sum_probs=68.8
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-CceEEEECCEeCCC---------ccccceEEEEccCC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS-LEGSVRIDGKPVTT---------SYMKMVSSYVMQDD 141 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~-~~G~I~i~G~~~~~---------~~~~~~~gyv~Q~~ 141 (820)
..+|+++ +.+.+||+++|+|+||+|||||+++|+|...+.. .-|.|-.+|.++.. ...+..++|++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 5699999 9999999999999999999999999999875431 12455555554432 11244689999999
Q ss_pred CCCCCCCHHHHHHHHHHhc
Q 003437 142 QLFPMLTVFETFMFAAEVR 160 (820)
Q Consensus 142 ~l~~~lTV~e~l~~~~~~~ 160 (820)
..+..+++.+++.+.++..
T Consensus 222 s~~~rl~a~e~a~~iAEyf 240 (434)
T PRK07196 222 SPLMRIKATELCHAIATYY 240 (434)
T ss_pred ChhhhHHHHHHHHHHHHHh
Confidence 9999999999998877654
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-06 Score=97.82 Aligned_cols=56 Identities=23% Similarity=0.379 Sum_probs=43.0
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 208 ~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
+++++|-.+|+++++||+. |+.++...++ .+..|.+|+.++|-.+. ....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNSA--AQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCCH--HHHHHHHHHh
Confidence 4667888999999999997 8888765444 35679999999999874 3556776544
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.1e-07 Score=100.15 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=61.7
Q ss_pred CCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCE
Q 003437 198 GVSGGERRRVSIGIDII---------HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~---------~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 268 (820)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+++.|.+.. .++|-+++.+ ..+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~~~-----~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTEAP-----PGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCCCC-----CCCce
Confidence 48999999999999999 8999999999999999999999999886542 3444444433 35899
Q ss_pred EEEEeCCeEEEE
Q 003437 269 IIVLARGRLVYM 280 (820)
Q Consensus 269 v~lL~~G~iv~~ 280 (820)
++.+.+|++.-.
T Consensus 335 ~~~~~~~~~~~~ 346 (349)
T PRK14079 335 TLRIEAGVFTPE 346 (349)
T ss_pred EEEEeccEecCC
Confidence 999999987543
|
|
| >PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.37 E-value=8e-07 Score=81.40 Aligned_cols=47 Identities=19% Similarity=0.341 Sum_probs=42.8
Q ss_pred ccchHHHHH-HcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 003437 772 TLIGEDIVY-SMDIQIENIWFDILILLAWGVLYRLFFYLVLRFYSKNV 818 (820)
Q Consensus 772 ~~~G~~~L~-~~g~~~~~~w~~~~il~~~~~~~~~l~~l~L~~~~~~~ 818 (820)
.++|++||+ +|||..+|+|||+||+++|+++|.++.++++.+.+..+
T Consensus 30 ~V~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~~~ 77 (103)
T PF06422_consen 30 YVSGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATEFIKFEK 77 (103)
T ss_pred EEeHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 458999997 89999999999999999999999999999999887554
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.3e-07 Score=99.12 Aligned_cols=46 Identities=28% Similarity=0.458 Sum_probs=33.0
Q ss_pred ceeee-eEEEeCCcEEEEEcCCCCcHHHHHHHHH--cCCCCCCCceEEEECC
Q 003437 74 LLHDI-SGQAIRGEIMAIMGPSGAGKSTFLDALA--GRIAQGSLEGSVRIDG 122 (820)
Q Consensus 74 iL~~v-s~~i~~Ge~~allGpnGsGKSTLl~~L~--G~~~~~~~~G~I~i~G 122 (820)
-|+.+ .+-+++|++++|.||+|+|||||...++ +.. .+ ++.+++..
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-~g--~~~~~is~ 56 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR-DG--DPVIYVTT 56 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh-cC--CeEEEEEc
Confidence 45553 5678999999999999999999988655 332 21 34556654
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.1e-06 Score=110.03 Aligned_cols=78 Identities=26% Similarity=0.404 Sum_probs=69.2
Q ss_pred CCCCCChHHHHHHHHHHHHh------cC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhc
Q 003437 195 GRRGVSGGERRRVSIGIDII------HK--PSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL 266 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~------~~--P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 266 (820)
.+..|||||+=.++||.+|+ .+ -++|||||||..||+.....+++.|..+...+.+|++|||+.. +...+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~ee--l~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEE--LKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHH--HHHhC
Confidence 56789999999888877765 45 6899999999999999999999999999988999999999975 56789
Q ss_pred CEEEEEeC
Q 003437 267 DRIIVLAR 274 (820)
Q Consensus 267 D~v~lL~~ 274 (820)
|.++.+..
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99988875
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.5e-06 Score=94.63 Aligned_cols=176 Identities=18% Similarity=0.185 Sum_probs=106.5
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC-----------ccccceEEEEccC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT-----------SYMKMVSSYVMQD 140 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~-----------~~~~~~~gyv~Q~ 140 (820)
.++++++ +.+.+||.++|+|+||+|||||+++|+|... ++.|.+...|+.-.. ..+++.+-++.+.
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~--~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~ 227 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE--ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATS 227 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECC
Confidence 4689999 9999999999999999999999999999874 345666665543221 1122233344433
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEE
Q 003437 141 DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLL 220 (820)
Q Consensus 141 ~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lL 220 (820)
+. ++.+-..-+. ..-.+.+.+...|- |.++-- ..|+ |.+=|.--+. +
T Consensus 228 d~-----~p~~r~~~~~------------~a~t~AE~frd~G~----~Vll~~---DslT-----r~A~A~REis----l 274 (440)
T TIGR01026 228 DQ-----SPLLRLKGAY------------VATAIAEYFRDQGK----DVLLLM---DSVT-----RFAMAQREIG----L 274 (440)
T ss_pred CC-----CHHHHHHHHH------------HHHHHHHHHHHCCC----CEEEEE---eChH-----HHHHHHHHHH----H
Confidence 22 2222111000 00011122222232 111100 0121 1111111011 3
Q ss_pred EEeCC--CCCCCHHHHHHHHHHHHHHHhCCc-------EEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccch
Q 003437 221 FLDEP--TSGLDSTSAYSVVEKVKDIARTGS-------IVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286 (820)
Q Consensus 221 llDEP--tsgLD~~~~~~i~~~L~~l~~~g~-------tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 286 (820)
.+.|| +.|+|+.....+-+++.+....+. ||++..||... .++|++..+.+|+++.+....+.
T Consensus 275 ~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 275 AAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred hcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhhC
Confidence 45675 459999999999999999876667 88888898753 46899999999999998876554
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.1e-07 Score=109.22 Aligned_cols=137 Identities=20% Similarity=0.274 Sum_probs=85.5
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
.|-+|+++. ..+.++.|.|||++||||+||.++-..- +.+.-.|||-+..- +++.+
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~i-------------------lAq~G~~VPa~~a~---i~~~d- 651 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVL-------------------LAQIGSFVPAESAR---IGIVD- 651 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHH-------------------HHhcCCceeccceE---ecccC-
Confidence 467777777 6678999999999999999999875421 11111244432211 11111
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh--cCCCEEEEeCC---CC
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII--HKPSLLFLDEP---TS 227 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~--~~P~lLllDEP---ts 227 (820)
.++.++|-. |. ...++|-=+.....++..|- ++++++|+||| |+
T Consensus 652 -----------------------~I~triga~---d~-----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 652 -----------------------RIFTRIGAS---DD-----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred -----------------------eeeeccCcc---cc-----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 111122211 11 11356766666666666654 48999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCE
Q 003437 228 GLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 228 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~ 268 (820)
.+|..+ ....+++.+.+. |.++|++||..+ +..++++
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~~e--l~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHYHE--LTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEechHH--HHHHhhh
Confidence 888444 455566666665 589999999953 6667765
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.2e-07 Score=91.83 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=64.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSIS 166 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~ 166 (820)
+++|.||||||||||.++|++++. .|.+. ++.+|+.+ ..++..+......... ..+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~----~~~~~----------------v~~~D~~~-~~~~~~~~~~~~~~~~---~~~ 56 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG----NPKVV----------------IISQDSYY-KDLSHEELEERKNNNY---DHP 56 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----CCCeE----------------EEEecccc-cccccccHHHhccCCC---CCC
Confidence 589999999999999999999762 12232 33333222 1122222221110000 001
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 003437 167 RDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDS 231 (820)
Q Consensus 167 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~ 231 (820)
.....+...+.+..+...+..+..+ ...|.|++++..+ .+.+|+++|+|+|..+.++
T Consensus 57 ~~~~~~~~~~~l~~l~~~~~~~~p~-----~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 57 DAFDFDLLISHLQDLKNGKSVEIPV-----YDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred CcccHHHHHHHHHHHHCCCCEeccc-----cccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 1111223445666665544333333 3578888776555 5788999999999998876
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-06 Score=98.73 Aligned_cols=84 Identities=20% Similarity=0.230 Sum_probs=65.4
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECC--
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG-- 122 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G-- 122 (820)
+..++.++++..|..+ ..+++.++ .+.+||.++|+||||+|||||+++|+++.. ++.|.|.+.|
T Consensus 137 p~~~~r~~v~~~l~TG-----------i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~--pd~gvv~liGer 202 (450)
T PRK06002 137 PPAMTRARVETGLRTG-----------VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA--FDTVVIALVGER 202 (450)
T ss_pred CCCeEeecceEEcCCC-----------cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCeeeeeecccC
Confidence 4458899999888532 35888886 999999999999999999999999999874 4579888854
Q ss_pred -EeCCC-------ccccceEEEEccCCC
Q 003437 123 -KPVTT-------SYMKMVSSYVMQDDQ 142 (820)
Q Consensus 123 -~~~~~-------~~~~~~~gyv~Q~~~ 142 (820)
+++.. ..+++.+++|+|.+.
T Consensus 203 grev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 203 GREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred CccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 55431 113457899999774
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.1e-07 Score=89.93 Aligned_cols=66 Identities=27% Similarity=0.420 Sum_probs=45.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCcc-c-cceEEEEccCCCCCCCCCHHHHHHH
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY-M-KMVSSYVMQDDQLFPMLTVFETFMF 155 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~-~-~~~~gyv~Q~~~l~~~lTV~e~l~~ 155 (820)
+||+++|+|+||||||||+++|+|++.+ +.++|.++.... . +...|+.+|+...++..++.+++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999998732 578887764321 1 1234666666544455555555443
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.17 E-value=5e-06 Score=106.66 Aligned_cols=146 Identities=22% Similarity=0.371 Sum_probs=82.6
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHH
Q 003437 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFA 156 (820)
Q Consensus 77 ~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~ 156 (820)
=+++..+++++++|+|++|+|||||++.+.+.+.. ..+|.+++++..+... .. .+-.++... .+...
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~~~v~~~--~~--~~~~~~~~~-------~~~~~- 265 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDRAFISKS--ME--IYSSANPDD-------YNMKL- 265 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeeccccccc--hh--hcccccccc-------cchhH-
Confidence 34667788999999999999999999999887643 3579998876332210 00 011111000 00000
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 003437 157 AEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYS 236 (820)
Q Consensus 157 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~ 236 (820)
...++.+.++++..++. +. .+ ++.|+| |..++-+|+||+- |.. .
T Consensus 266 -----------~l~~~~l~~il~~~~~~------~~-----~~-~~~~~~------L~~krvLLVLDdv----~~~---~ 309 (1153)
T PLN03210 266 -----------HLQRAFLSEILDKKDIK------IY-----HL-GAMEER------LKHRKVLIFIDDL----DDQ---D 309 (1153)
T ss_pred -----------HHHHHHHHHHhCCCCcc------cC-----CH-HHHHHH------HhCCeEEEEEeCC----CCH---H
Confidence 01122344444444431 11 12 566666 3355567888984 433 3
Q ss_pred HHHHHHHHH---hCCcEEEEEEcCccHHHHhh-cCEEEEE
Q 003437 237 VVEKVKDIA---RTGSIVLMTIHQPSYRIQML-LDRIIVL 272 (820)
Q Consensus 237 i~~~L~~l~---~~g~tvi~~~H~~~~~i~~~-~D~v~lL 272 (820)
.++.|+... ..|.+||+|||+... +... +|+++.+
T Consensus 310 ~l~~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v 348 (1153)
T PLN03210 310 VLDALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEV 348 (1153)
T ss_pred HHHHHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEe
Confidence 345554433 358899999999764 3322 5776655
|
syringae 6; Provisional |
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.1e-06 Score=109.32 Aligned_cols=60 Identities=25% Similarity=0.359 Sum_probs=52.8
Q ss_pred CCCCChHHHHHHH----HHHH--------HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCc
Q 003437 196 RRGVSGGERRRVS----IGID--------IIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQP 258 (820)
Q Consensus 196 ~~~LSGGerqRv~----ia~a--------L~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 258 (820)
..+||||||||++ +|++ +..+|++++|||||+|||+.+...++++|.++ |.++|+++|..
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 4689999999996 5644 55899999999999999999999999999888 78899999874
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.7e-05 Score=94.18 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=44.6
Q ss_pred HHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 212 DIIHKPSLLFLDEPTSGLD-STSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 212 aL~~~P~lLllDEPtsgLD-~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
.+..+|.++++|||...|| +..+..+.+.++.+.+.|..++++||+++.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3456899999999999999 889999999999999889999999999875
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.6e-05 Score=79.78 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=32.9
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
...|+++.+-+.+|+++.|.|++|+|||||+..++..
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3478998889999999999999999999999887754
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=6e-05 Score=93.39 Aligned_cols=47 Identities=26% Similarity=0.263 Sum_probs=43.0
Q ss_pred hcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 214 IHKPSLLFLDEPTSGLD-STSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 214 ~~~P~lLllDEPtsgLD-~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
-.+|+++++|||+.+|| +..+..+.+.++.+.+.|.+++++||++..
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 680 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLAD 680 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 45899999999999999 788999999999999889999999999864
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.3e-05 Score=91.32 Aligned_cols=110 Identities=19% Similarity=0.201 Sum_probs=72.6
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECC---EeCCC---ccc---cceEEEE-----
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG---KPVTT---SYM---KMVSSYV----- 137 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G---~~~~~---~~~---~~~~gyv----- 137 (820)
.++++++ +.+.+||.++|+|+||+|||||+++|+|..+. ...|.|.+.| +++.. ..+ ....+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE-ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc-CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 4589998 99999999999999999999999999997732 2347777744 44421 111 1223455
Q ss_pred ccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 003437 138 MQDDQ--LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR 184 (820)
Q Consensus 138 ~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 184 (820)
+|++. +.|.+ +...+....+.+....+...+...++.+++++++|.
T Consensus 230 ~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 230 DQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 88763 44444 555554444333111123356678889999999984
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.6e-05 Score=88.93 Aligned_cols=78 Identities=23% Similarity=0.291 Sum_probs=57.4
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHH
Q 003437 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFM 154 (820)
Q Consensus 75 L~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~ 154 (820)
++.+.-.+.+|+.++|+|+||+|||||+++|+|... +..|+|.+++........++.+.+++|+..++.+ +...++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~--~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV--QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc--cceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhc
Confidence 444555677899999999999999999999999875 4679999987543222334567899998877764 3444444
Q ss_pred H
Q 003437 155 F 155 (820)
Q Consensus 155 ~ 155 (820)
+
T Consensus 262 l 262 (356)
T PRK01889 262 L 262 (356)
T ss_pred c
Confidence 3
|
|
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.9e-05 Score=70.63 Aligned_cols=47 Identities=30% Similarity=0.523 Sum_probs=36.5
Q ss_pred CCCChHHHH-HHHHHHHHh------c------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 003437 197 RGVSGGERR-RVSIGIDII------H------KPSLLFLDEPTSGLDSTSAYSVVEKVKD 243 (820)
Q Consensus 197 ~~LSGGerq-Rv~ia~aL~------~------~P~lLllDEPtsgLD~~~~~~i~~~L~~ 243 (820)
.++|||||| .+.++.+++ . .|++++||||+++||+.....++++|++
T Consensus 31 ~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 31 GTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 479999994 444444432 2 3789999999999999999999999875
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00012 Score=74.34 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=45.1
Q ss_pred HHHHHHHHcCCC-ccccccccCCCCCCCChHHHHHHH--HHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 003437 173 RVYELLDQLGLR-SATHTYIGNEGRRGVSGGERRRVS--IGIDIIH-KPSLLFLDEPTSGLDSTSAYSVVEKVKDIART 247 (820)
Q Consensus 173 ~v~~~l~~lgL~-~~~~~~ig~~~~~~LSGGerqRv~--ia~aL~~-~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~ 247 (820)
.+.+.++..++. -..-+++ ..+++||+|++. +.+.+-. +++++ |+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~-----Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKA-----DKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEEEEEECc-----ccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 445566666654 1222333 358999999987 5555433 34443 99999999999999999988765
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.3e-05 Score=66.16 Aligned_cols=36 Identities=33% Similarity=0.512 Sum_probs=29.5
Q ss_pred eeeeeEEEeC-CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003437 75 LHDISGQAIR-GEIMAIMGPSGAGKSTFLDALAGRIA 110 (820)
Q Consensus 75 L~~vs~~i~~-Ge~~allGpnGsGKSTLl~~L~G~~~ 110 (820)
+++.++.+.+ |++++|.|||||||||||++|.=.+.
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4556677775 57999999999999999999986653
|
|
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.7e-06 Score=82.77 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccH-HHHhhcCEEEEEeCC
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSY-RIQMLLDRIIVLARG 275 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~-~i~~~~D~v~lL~~G 275 (820)
|+-+|..||..+..+|+.+..+| +.+||....++.+.+++..++|.+||+.+|.+.. ....+||.+++++.+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 77889999999999999988777 8999999999999998887667899999998732 256689999887554
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00067 Score=71.91 Aligned_cols=186 Identities=13% Similarity=0.125 Sum_probs=99.2
Q ss_pred HHHHHhhHHHhhcChHHHHHHHHHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHhh
Q 003437 528 AVLSWRTALNVIRTPELFLSREIVFAVMALILSSLFK---NLSHHDFKTINRLLNFYIFAVCLVFFSSNDAVPTFIQERF 604 (820)
Q Consensus 528 ~~L~~R~~~~~~Rdp~~~~~r~~~~i~~~lliG~lf~---~l~~~~~~~~~~~~g~~ff~~~~~~~~~~~~i~~f~~eR~ 604 (820)
+.+.+|+++...|.|..+..-.+..++.|+.. ..|. +....+..+.+...+...+ .+.+ .+|.. --.
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~--~~~~-----~~p~l--~~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLAPW--VFLF-----LIPAI--TMR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHHHH--HHHH-----HHHHH--HHH
Confidence 45789999999999988877776666666442 2221 1111111222222211111 1111 11111 124
Q ss_pred HHHhHhcCCCC--------ChhHHHHHHHHHHhhHHHHHHh---HHhhhhhhccC----CCc-hHHHHHHHHHHHHHHHH
Q 003437 605 IFIRETSHNAY--------RASSYVVSSLLVYLPFFGIQGL---TFAAITKLLLK----LHS-SLLNFWMILFASLITTN 668 (820)
Q Consensus 605 vf~RE~~~g~Y--------~~~aY~la~~l~elP~~~~~~~---if~~i~Y~m~G----l~~-~f~~f~l~l~l~~~~~~ 668 (820)
.+.+||++|.. +++.+.++|.++-+-+.++..+ ++....++... +.. .+...++.+++...+..
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVYT 151 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHH
Confidence 66688888875 5688899999987655443222 22222222211 111 12222233334444566
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHhccceecCCCC--CcceeehhccChhhHHHH
Q 003437 669 AYVMLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHI--PPYWRWLHYISAIKYPFE 726 (820)
Q Consensus 669 s~~~~i~a~~ps~~~a~~v~~~~~~~~~lf~Gf~i~~~~i--P~~~~W~~yiSp~~Ya~e 726 (820)
++|.++|+++.+...|..++... +++++.|+.. ..++ |++.+|+.|+||..|-.+
T Consensus 152 aig~~iSsl~~~q~~a~~~~~~~--~~~l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~ 208 (240)
T TIGR03518 152 AIGLFASSLTENQIVAFIIAVFL--CFLFYFGFDG-LASLLWGGSAYTISELGLSYHYES 208 (240)
T ss_pred HHHHHHHHHhchHHHHHHHHHHH--HHHHHHHHHH-HhhhcchhHHHHHHHcCHHHHHHH
Confidence 89999999998877765444322 2222223211 2333 788899999999777544
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00012 Score=69.36 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEEEcCcc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-----TGSIVLMTIHQPS 259 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tvi~~~H~~~ 259 (820)
++..........++.++++||.-.. +......+.+.+..+.. .+..+|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3445555666778999999998775 66667778888887753 4778888888654
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.9e-05 Score=85.76 Aligned_cols=52 Identities=27% Similarity=0.355 Sum_probs=46.1
Q ss_pred eEEEEEEEEEECccccccccccccccccee-----------eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLH-----------DISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~-----------~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+||++.|+.. +.+|+ |+++.|.+|+.++|+||+|+|||||++.|+..+
T Consensus 130 ri~Fe~LTf~YP~e-----------r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 130 RVLFENLTPLYPNE-----------RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CeEEEEeeecCCCc-----------cceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 49999999999742 24675 999999999999999999999999999999865
|
Members of this family differ in the specificity of RNA binding. |
| >COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0051 Score=65.97 Aligned_cols=202 Identities=15% Similarity=0.160 Sum_probs=125.0
Q ss_pred HHHHHHHHHHhhHHHhhcChHHHHH-----HHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHh--hhhc
Q 003437 523 WLREVAVLSWRTALNVIRTPELFLS-----REIVFAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFFS--SNDA 595 (820)
Q Consensus 523 ~~~Q~~~L~~R~~~~~~Rdp~~~~~-----r~~~~i~~~lliG~lf~~l~~~~~~~~~~~~g~~ff~~~~~~~~--~~~~ 595 (820)
.++.++.|.+|.++..+|+..+=.. =+.+.++++++.|.++-. +..+. -..-..|.+ .+.++. ....
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~-~~~~~-~~~l~~G~~----~w~f~~~~i~~~ 89 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRS-PGLNF-LAYLLAGLI----LWFFFSEAISEG 89 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhC-CCcch-HHHHHHHHH----HHHHHHHHHHhH
Confidence 5677888999999998887643222 234555566666666543 21111 111122221 222222 2334
Q ss_pred HHHHHHHhhHHHhHhcCCCCChhHHHHHHHHHHhhHHHHHHhHHhhhhhhccCCC-chHHHHHHHHHHHHHHHHHHHHHH
Q 003437 596 VPTFIQERFIFIRETSHNAYRASSYVVSSLLVYLPFFGIQGLTFAAITKLLLKLH-SSLLNFWMILFASLITTNAYVMLV 674 (820)
Q Consensus 596 i~~f~~eR~vf~RE~~~g~Y~~~aY~la~~l~elP~~~~~~~if~~i~Y~m~Gl~-~~f~~f~l~l~l~~~~~~s~~~~i 674 (820)
...+.+...++.|-+ .++..+.+++++.++--..+..++....+=|.-+.. ..+..+...+.+..+.+.++++++
T Consensus 90 ~~s~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~s~~~l~~~~~l~~l~l~~~g~~l~~ 165 (263)
T COG1682 90 AGSVVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEPSWHWLLLLPALLLLILFSVGLGLIL 165 (263)
T ss_pred HHHhhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556655442 488999999999987776666665555444444444 223344444555555666777777
Q ss_pred HHhcchH-HHHHHHHHHHHHHHHHhccceecCCCCCcceeehhccChhhHHHHHHHHhhcCC
Q 003437 675 SALVPSY-IAGYAVVIATTALFFLTCGFFLKRGHIPPYWRWLHYISAIKYPFEALLTNEFKG 735 (820)
Q Consensus 675 ~a~~ps~-~~a~~v~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~yiSp~~Ya~eal~~nef~~ 735 (820)
|.++.-+ +....+ ..++-+++..+|.+-+.+.+|.-++|+.++||+.+-.|.+=..-+++
T Consensus 166 a~l~v~fRD~~~i~-~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~ 226 (263)
T COG1682 166 ASLGVRFRDLGQIL-GVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGG 226 (263)
T ss_pred HhHhhhcccHHHHH-HHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCC
Confidence 6665443 233343 44445667788999999999999999999999999999887766655
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.1e-05 Score=79.91 Aligned_cols=37 Identities=35% Similarity=0.632 Sum_probs=30.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
|++++|+||||||||||+++|++... ..+.+++..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~-----~~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ-----TQLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC-----CeEEEcCEECC
Confidence 78999999999999999999999763 25777776654
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.80 E-value=8e-06 Score=84.40 Aligned_cols=28 Identities=32% Similarity=0.513 Sum_probs=25.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRIA 110 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~~ 110 (820)
++|++++|+||||||||||++.|++++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999999999763
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=97.78 E-value=8.5e-05 Score=88.93 Aligned_cols=112 Identities=21% Similarity=0.288 Sum_probs=71.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCC------CCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHH
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQG------SLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAA 157 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~~~~------~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~ 157 (820)
..+.++|+||||+|||||+++|.+..... ...+-|.+||..+.. ..+. + .+-.+.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~-d~~~----------------i-~~~llg- 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW-DPRE----------------V-TNPLLG- 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC-CHHH----------------H-hHHhcC-
Confidence 34679999999999999999999875321 112335555543310 0000 0 011111
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q 003437 158 EVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSV 237 (820)
Q Consensus 158 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i 237 (820)
.. .+...+.+.+.++..|+.+..+..+. .+||| +||||| +..||+..+..+
T Consensus 235 ------~~-~~~~~~~a~~~l~~~gl~~~~~g~v~-----~asgG----------------vL~LDE-i~~Ld~~~Q~~L 285 (615)
T TIGR02903 235 ------SV-HDPIYQGARRDLAETGVPEPKTGLVT-----DAHGG----------------VLFIDE-IGELDPLLQNKL 285 (615)
T ss_pred ------Cc-cHHHHHHHHHHHHHcCCCchhcCchh-----hcCCC----------------eEEEec-cccCCHHHHHHH
Confidence 01 11122345556788898776666553 58888 999999 799999999999
Q ss_pred HHHHHH
Q 003437 238 VEKVKD 243 (820)
Q Consensus 238 ~~~L~~ 243 (820)
++.|++
T Consensus 286 l~~Le~ 291 (615)
T TIGR02903 286 LKVLED 291 (615)
T ss_pred HHHHhh
Confidence 888865
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.3e-05 Score=75.20 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 003437 172 KRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDI-----IHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI 244 (820)
Q Consensus 172 ~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL-----~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l 244 (820)
..+.+.+...+..-. ..+++ ..++++++++....... ...|+++ |+|++|.....++++.|.++
T Consensus 100 ~~~~~~l~~~~~~vi~v~nK~-----D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 100 LEMLDWLEELGIPFLVVLTKA-----DKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHcCCCEEEEEEch-----hcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 345556666653311 22222 24788988877666553 3345655 99999999999999988765
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 820 | ||||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 8e-15 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-14 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-14 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-14 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 6e-14 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-13 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-13 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-13 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-12 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-12 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 3e-12 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 4e-11 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 6e-11 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 6e-11 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-10 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 4e-10 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-10 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 9e-10 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-09 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-09 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-09 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 3e-09 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 5e-09 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 7e-09 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 7e-09 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 8e-09 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-08 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-08 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 3e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 4e-08 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-08 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 5e-08 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 2e-07 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 7e-07 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-06 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-06 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 3e-06 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 6e-06 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 7e-06 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-05 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-05 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-05 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-05 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-05 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-05 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 3e-05 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-05 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-05 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-04 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 1e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 2e-04 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 4e-04 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 4e-04 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 4e-04 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 7e-04 |
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 5e-41
Identities = 63/238 (26%), Positives = 101/238 (42%), Gaps = 23/238 (9%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
L IS + GEI ++GP+GAGK+T L ++ I S G V + GK V ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS--GIVTVFGKNVVEEPHEVRK 88
Query: 135 S--YVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG 192
Y+ ++ + + E F A + S E ++ V + GL +
Sbjct: 89 LISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS 145
Query: 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVL 252
S G R++ I ++ P L LDEPTSGLD +A V + +K ++ G +L
Sbjct: 146 T-----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 200
Query: 253 MTIHQPSY--RIQMLLDRIIVLARGRLVYMGSPVALPAHLAG------FGRTVPDGEN 302
++ H ++ L DRI ++ G +V G+ L F V EN
Sbjct: 201 VSSH---NMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKCSEN 255
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 5e-36
Identities = 40/235 (17%), Positives = 88/235 (37%), Gaps = 34/235 (14%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
LE ++LS K L I+ +G ++ GP+G GK+T L ++
Sbjct: 11 LEIRDLS-------VGYD----KPV--LERITMTIEKGNVVNFHGPNGIGKTTLLKTIST 57
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISR 167
+ G + +G P+T +K ++ ++ + ++V + A +
Sbjct: 58 YLKPLK--GEIIYNGVPITK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLY-----GV 108
Query: 168 DEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTS 227
K + + L+ + + +G +S G RRV + ++ + LD+P
Sbjct: 109 KVNKNEIMDALESVEVLDL-KKKLGE-----LSQGTIRRVQLASTLLVNAEIYVLDDPVV 162
Query: 228 GLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
+D S + V++ + +I + G +++ + D L +
Sbjct: 163 AIDEDSKHKVLKSILEILKEKGIVIISSRE-----ELSYCDVNENLHKYSTKIDK 212
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 7e-33
Identities = 56/249 (22%), Positives = 104/249 (41%), Gaps = 36/249 (14%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
++ + K G I L IS Q +G+ + G +GAGK+T L+ L
Sbjct: 22 IQLDQIGRM------KQGKTI------LKKISWQIAKGDKWILYGLNGAGKTTLLNILNA 69
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMK---------MVSSYVMQDDQLFPMLTVFETFMFAAE 158
S G+V + GK VS +++ V + + A
Sbjct: 70 YEPATS--GTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEK--FQEGERVIDVVISGAF 125
Query: 159 VRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKP 217
+ DE + ++LL +G+ + YIG +S GE++RV I ++ +P
Sbjct: 126 KSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGY-----LSTGEKQRVMIARALMGQP 180
Query: 218 SLLFLDEPTSGLDSTSAYSVVEKVKDIARTG---SIVLMTIHQPSYRIQMLLDRIIVLAR 274
+L LDEP +GLD + S++ + ++ + +++ +T H I +I++L
Sbjct: 181 QVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVT-HFIE-EITANFSKILLLKD 238
Query: 275 GRLVYMGSP 283
G+ + G+
Sbjct: 239 GQSIQQGAV 247
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 2e-32
Identities = 68/245 (27%), Positives = 110/245 (44%), Gaps = 34/245 (13%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+E N+S+ G + K+A L ++S GE + + G +G+GKST L +AG
Sbjct: 3 IEVVNVSHIFH-----RGTPLEKKA--LENVSLVINEGECLLVAGNTGSGKSTLLQIVAG 55
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQ--DDQLFPMLTVFETFMFAAEVRLPPSI 165
I S G V DG+ ++ Q +DQ F VF+ FA + P
Sbjct: 56 LIEPTS--GDVLYDGERKKGYEIRRNIGIAFQYPEDQFF-AERVFDEVAFAVKNFYPD-- 110
Query: 166 SRDEKKKRVYELLDQLGLRS------ATHTYIGNEGRRGVSGGERRRVSI-GIDIIHKPS 218
+ V + ++ +GL +SGGE+RRV+I + I+H+P
Sbjct: 111 --RDPVPLVKKAMEFVGLDFDSFKDRVPFF---------LSGGEKRRVAIASV-IVHEPD 158
Query: 219 LLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
+L LDEP GLD ++ V+ G V++ H I +DR++VL +G+ V
Sbjct: 159 ILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVIN-HVDRVVVLEKGKKV 217
Query: 279 YMGSP 283
+ G+
Sbjct: 218 FDGTR 222
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 3e-31
Identities = 65/249 (26%), Positives = 112/249 (44%), Gaps = 41/249 (16%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
L+ + L+Y+ L I+ RGE+ AI+G +G GKST G
Sbjct: 8 LKVEELNYNYSDGTH-----------ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG 56
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVS-----SYVMQ--DDQLFPMLTVFETFMFAAEVR 160
+ S G + D KP+ S ++ V Q D+QLF +V++ F A
Sbjct: 57 ILKPSS--GRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF-SASVYQDVSFGAVNM 113
Query: 161 LPPSISRDEKKKRVYELLDQLGL----RSATHTYIGNEGRRGVSGGERRRVSI-GIDIIH 215
+ DE +KRV L + G+ TH +S G+++RV+I G+ ++
Sbjct: 114 ---KLPEDEIRKRVDNALKRTGIEHLKDKPTHC---------LSFGQKKRVAIAGV-LVM 160
Query: 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI-VLMTIHQPSYRIQMLLDRIIVLAR 274
+P +L LDEPT+GLD +++ + ++ + I +++ H D + V+
Sbjct: 161 EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPL-YCDNVFVMKE 219
Query: 275 GRLVYMGSP 283
GR++ G+P
Sbjct: 220 GRVILQGNP 228
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 2e-29
Identities = 65/237 (27%), Positives = 98/237 (41%), Gaps = 27/237 (11%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEA--YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDAL 105
E +L S K K I K+ + L +G+A GEI+ I+GP+G GK+TF L
Sbjct: 255 KEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARIL 314
Query: 106 AGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSI 165
G I GSV + + + SY Q TV + A++ L S
Sbjct: 315 VGEITADE--GSVTPEKQIL---------SYKPQRIFPNYDGTVQQYLENASKDALSTSS 363
Query: 166 SRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEP 225
E E+ +L L + + + +SGGE +++ I + + L LD+P
Sbjct: 364 WFFE------EVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLAKEADLYVLDQP 412
Query: 226 TSGLDSTSAYSVVEKVKDIARTGSIVLMTI-HQPSYRIQMLLDRIIVLARGRLVYMG 281
+S LD Y V + +K + R V I H + DRIIV +G G
Sbjct: 413 SSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVF-KGEPEKAG 467
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 1e-25
Identities = 31/212 (14%), Positives = 87/212 (41%), Gaps = 15/212 (7%)
Query: 75 LHDISGQAIR-GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY---- 129
+ I+ ++G +G GK+T L LAG I + + ++ V +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 130 MKMVSSYVMQDDQLFPMLTVF--ETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
+ + ++ L + + E + + +++ +++ + E+ + L + +
Sbjct: 74 IYNYFKELYSNE-LKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLW 132
Query: 188 HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART 247
+ +SGG +R+ + ++ + + D+P+S LD ++ + ++++ +
Sbjct: 133 NKDANI-----LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKN 187
Query: 248 GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279
++++ H + L D I ++ VY
Sbjct: 188 KYVIVVD-HDLIV-LDYLTDLIHIIYGESSVY 217
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 4e-29
Identities = 51/236 (21%), Positives = 95/236 (40%), Gaps = 41/236 (17%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMV 133
L +SG+ GEI+ ++GP+GAGKST L +AG + +GS++ G+P+ +
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKL 71
Query: 134 S---SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHT 189
+ +Y+ Q V+ + + + ++ L L +
Sbjct: 72 ALHRAYLSQQQTPPFATPVWHYLTLH---QHD---KTRT--ELLNDVAGALALDDKLGRS 123
Query: 190 YIGNEGRRGVSGGERRRVSI-------GIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVK 242
+SGGE +RV + LL LDEP + LD ++ + +
Sbjct: 124 T------NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILS 177
Query: 243 DIARTGSIVLMTIHQPSYRIQMLL-----DRIIVLARGRLVYMGSP--VALPAHLA 291
+++ G ++M+ H + R +L G+++ G V P +LA
Sbjct: 178 ALSQQGLAIVMSSHDLN------HTLRHAHRAWLLKGGKMLASGRREEVLTPPNLA 227
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 4e-29
Identities = 67/227 (29%), Positives = 102/227 (44%), Gaps = 51/227 (22%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSL----EGSVRIDGKPVTTSYM 130
L IS +GE ++I+G SG+GKST L L G L EG V ++GK V
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYIL------GLLDAPTEGKVFLEGKEVDY--- 70
Query: 131 KMVSSYVMQDDQL---------FPMLTVFETF-----MFAAE-VRLP---PSISRDEKKK 172
+ +L F VF+ + A E V +P + E K+
Sbjct: 71 -------TNEKELSLLRNRKLGF----VFQFHYLIPELTALENVIVPMLKMGKPKKEAKE 119
Query: 173 RVYELLDQLGLRS-ATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDS 231
R LL +LGL + E +SGGE++RV+I + ++P LLF DEPT LDS
Sbjct: 120 RGEYLLSELGLGDKLSRK--PYE----LSGGEQQRVAIARALANEPILLFADEPTGNLDS 173
Query: 232 TSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
+ V++ I G+ ++M H+ + L R + + G++V
Sbjct: 174 ANTKRVMDIFLKINEGGTSIVMVTHERE--LAELTHRTLEMKDGKVV 218
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 2e-28
Identities = 49/199 (24%), Positives = 81/199 (40%), Gaps = 26/199 (13%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
L G+ +GE++ I+GP+G GK+TF+ LAG G V D
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE--GKVEWDLTV---------- 419
Query: 135 SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNE 194
+Y Q + TV+E +L + ELL LG+ + +
Sbjct: 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNF-------YKTELLKPLGIIDLYDRNVED- 471
Query: 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMT 254
+SGGE +RV+I ++ + LDEP++ LD +V ++ + +
Sbjct: 472 ----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 527
Query: 255 I-HQPSYRIQMLLDRIIVL 272
+ H I + DR+IV
Sbjct: 528 VEHDV-LMIDYVSDRLIVF 545
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 3e-25
Identities = 49/244 (20%), Positives = 98/244 (40%), Gaps = 23/244 (9%)
Query: 44 PGHGLEFKNLSYSIMKK-QKKDGVWITKEAYLLHDISGQAIR-GEIMAIMGPSGAGKSTF 101
P + + NL + + + G A++L+ + ++ G ++ I+GP+G GK+T
Sbjct: 80 PFNAISIVNLPEQLDEDCVHRYG----VNAFVLYRLPI--VKDGMVVGIVGPNGTGKTTA 133
Query: 102 LDALAGRIA----QGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLF--PMLTVFETFMF 155
+ LAG++ + + I + + + + +
Sbjct: 134 VKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVK 193
Query: 156 AAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIH 215
L + + ++ + E++ +L L + + +SGGE +RV+I ++
Sbjct: 194 GKVREL---LKKVDEVGKFEEVVKELELENVLDRELHQ-----LSGGELQRVAIAAALLR 245
Query: 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275
K F DEP+S LD V ++ +A G VL+ H + + L D I V+
Sbjct: 246 KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAV-LDYLSDVIHVVYGE 304
Query: 276 RLVY 279
VY
Sbjct: 305 PGVY 308
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 4e-28
Identities = 48/242 (19%), Positives = 101/242 (41%), Gaps = 39/242 (16%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
++ KN+ ++ G + + L +I+ + + GE + I+GP+G+GK+T L A++G
Sbjct: 2 IQLKNVGITL------SGKGYERFS--LENINLE-VNGEKVIILGPNGSGKTTLLRAISG 52
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPM-LTVFETFMFAAEVRLPPSIS 166
+ G++ I+G V ++ Y + + + +TV + E++
Sbjct: 53 LLPY---SGNIFINGMEVRK--IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELK------ 101
Query: 167 RDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEP 225
+ E+L L L + +S G+ V + + +P ++ LDEP
Sbjct: 102 -GLDRDLFLEMLKALKLGEEILRRKLYK-----LSAGQSVLVRTSLALASQPEIVGLDEP 155
Query: 226 TSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL---DRIIVLARG-RLVYMG 281
+D+ + + +K+ + +L+T H+ + ML + G RL
Sbjct: 156 FENVDAARRHVISRYIKEYGKE--GILVT-HE----LDMLNLYKEYKAYFLVGNRLQGPI 208
Query: 282 SP 283
S
Sbjct: 209 SV 210
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 2e-27
Identities = 51/242 (21%), Positives = 97/242 (40%), Gaps = 36/242 (14%)
Query: 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDAL 105
L +NL + + L ++ +G+I+A++G +G GKST LD L
Sbjct: 3 KALSVENLGFYYQAENF-----------LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLL 51
Query: 106 AGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQD-DQLFPMLTVFETFMF--AAEVRLP 162
G ++G + + +V Q F +V + + + +
Sbjct: 52 LGIHR--PIQGKIEVYQS----------IGFVPQFFSSPFA-YSVLDIVLMGRSTHINTF 98
Query: 163 PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFL 222
+ + + LD L L + +SGG+R+ + I I + L+ L
Sbjct: 99 AKPKSHDYQV-AMQALDYLNLTHLAKREFTS-----LSGGQRQLILIARAIASECKLILL 152
Query: 223 DEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
DEPTS LD + V+ + D+A++ V+ T HQP+ + + ++ ++L + G
Sbjct: 153 DEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLL-NKQNFKFG 210
Query: 282 SP 283
Sbjct: 211 ET 212
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 4e-27
Identities = 49/255 (19%), Positives = 94/255 (36%), Gaps = 38/255 (14%)
Query: 44 PGHGLEFKNLSYSIMKKQKKDGVWIT----KEAYLLHDISGQAIR-GEIMAIMGPSGAGK 98
P ++ NL ++ +T ++ LH + R G+++ ++G +G GK
Sbjct: 66 PFDAIQIINLPTNLEAH-------VTHRYSANSFKLHRLP--TPRPGQVLGLVGTNGIGK 116
Query: 99 STFLDALAGRIAQGS---------LEGSVRIDGKPVTTSYMKMVSSYVM-----QDDQLF 144
ST L LAG+ E G + + KM+ + Q
Sbjct: 117 STALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNI 176
Query: 145 PMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204
P + E+ + ++ + V + L L + I +SGGE
Sbjct: 177 PR-AIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQLENVLKRDIEK-----LSGGEL 227
Query: 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQM 264
+R +IG+ + + + DEP+S LD + + ++ + V+ H S +
Sbjct: 228 QRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSV-LDY 286
Query: 265 LLDRIIVLARGRLVY 279
L D + ++ VY
Sbjct: 287 LSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 4e-27
Identities = 46/234 (19%), Positives = 87/234 (37%), Gaps = 36/234 (15%)
Query: 53 LSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQG 112
SY +KK + D V L+ G+ EI+ +MG +G GK+T + LAG +
Sbjct: 354 FSYPSLKKTQGDFV--------LNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD 405
Query: 113 SLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKK 172
EG S + TV + +F ++R + +
Sbjct: 406 --EGQDIPKLNV---SMKPQKIAPKFPG-------TVRQ--LFFKKIR-----GQFLNPQ 446
Query: 173 RVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST 232
+++ L + + + +SGGE +RV+I + + + +DEP++ LDS
Sbjct: 447 FQTDVVKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSE 501
Query: 233 SAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLA--RGRLVYMGSP 283
+ ++ + H L D++IV + + +P
Sbjct: 502 QRIICSKVIRRFILHNKKTAFIVEHDFIM-ATYLADKVIVFEGIPSKNAHARAP 554
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-26
Identities = 63/230 (27%), Positives = 104/230 (45%), Gaps = 52/230 (22%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSL----EGSVRIDGKPVTTSYM 130
L +++ GE ++IMGPSG+GKST L+ + G L EG V ID
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII------GCLDKPTEGEVYIDNIKTND--- 71
Query: 131 KMVSSYVMQDDQL---------FPMLTVFETF-----MFAAE-VRLP------PSISRDE 169
+ DD+L F VF+ F + A E V LP ++S +E
Sbjct: 72 -------LDDDELTKIRRDKIGF----VFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 170 KKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGL 229
++KR E L L + N+ +SGG+++RV+I + + P ++ D+PT L
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQ----LSGGQQQRVAIARALANNPPIILADQPTWAL 176
Query: 230 DSTSAYSVVEKVKDI-ARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278
DS + +++ +K + G V++ H + + +RII L G +
Sbjct: 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVE 224
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 2e-26
Identities = 49/208 (23%), Positives = 84/208 (40%), Gaps = 27/208 (12%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
L G+ +GE++ I+GP+G GK+TF+ LAG EG + D
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT--EGKIEWDLTV---------- 349
Query: 135 SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNE 194
+Y Q + TV+E +++ + ELL LG+ +
Sbjct: 350 AYKPQYIKADYEGTVYELL---SKIDAS----KLNSNFYKTELLKPLGIIDLYDREVNE- 401
Query: 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMT 254
+SGGE +RV+I ++ + LDEP++ LD +V ++ + +
Sbjct: 402 ----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 457
Query: 255 I-HQPSYRIQMLLDRIIVLARGRLVYMG 281
+ H I + DR++V G G
Sbjct: 458 VEHDVLM-IDYVSDRLMVF-EGEPGKYG 483
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 1e-21
Identities = 42/202 (20%), Positives = 82/202 (40%), Gaps = 15/202 (7%)
Query: 84 RGEIMAIMGPSGAGKSTFLDALAGRIA----QGSLEGSVRIDGKPVTTSYMKMVSSYVMQ 139
G ++ I+GP+G GKST + LAG++ + I +
Sbjct: 46 EGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGE 105
Query: 140 DDQLF--PMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR 197
+ + + + + L + + ++ ++ E++ L L + I +
Sbjct: 106 IRPVVKPQYVDLIPKAVKGKVIEL---LKKADETGKLEEVVKALELENVLEREIQH---- 158
Query: 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQ 257
+SGGE +RV+I ++ + F DEP+S LD + ++ ++ G VL+ H
Sbjct: 159 -LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217
Query: 258 PSYRIQMLLDRIIVLARGRLVY 279
+ + L D I V+ VY
Sbjct: 218 LAV-LDYLSDIIHVVYGEPGVY 238
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 32/228 (14%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
L +S +G++ I+GP+G+GKST ++ + G + G V + K +T +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE--GRVYFENKDITNKEPAELY 80
Query: 135 SYVM----QDDQLFPMLTVFETFMFAAEVR--------LPPSISRDEK--KKRVYELLDQ 180
Y + Q Q +TV E + E+ ++ +++L+
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 181 LGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240
L L G +SGG+ + V IG ++ P ++ +DEP +G+ A+ +
Sbjct: 141 LKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 195
Query: 241 VKDIARTGSIVLMTIHQPSYRIQMLL-----DRIIVLARGRLVYMGSP 283
V ++ G L+ H ++ + D + V+ G+++ G
Sbjct: 196 VLELKAKGITFLIIEH------RLDIVLNYIDHLYVMFNGQIIAEGRG 237
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 1e-23
Identities = 68/224 (30%), Positives = 111/224 (49%), Gaps = 36/224 (16%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSVRIDGKPVTT--- 127
L+++S G+I ++G SGAGKST + + LE GSV +DG+ +TT
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL------LERPTEGSVLVDGQELTTLSE 97
Query: 128 -------SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQ 180
+ M + Q L TVF E+ + +DE K+RV ELL
Sbjct: 98 SELTKARRQIGM----IFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSL 150
Query: 181 LGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240
+GL +Y N +SGG+++RV+I + P +L D+ TS LD + S++E
Sbjct: 151 VGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILEL 205
Query: 241 VKDI-ARTG-SIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
+KDI R G +I+L+T H+ ++ + D + V++ G L+ +
Sbjct: 206 LKDINRRLGLTILLIT-HEMDV-VKRICDCVAVISNGELIEQDT 247
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 2e-22
Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 44/241 (18%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSVRIDGKPVTTSYM 130
L+DIS GEI+ I+G SG GK+T L LAG E G + + GK + +
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAG------FEQPDSGEISLSGKTIFSKNT 73
Query: 131 KM------VSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR 184
+ + Y++Q+ LFP LTV+ + ++++R+ +L+ G+
Sbjct: 74 NLPVRERRL-GYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGIS 129
Query: 185 SATHTYIGNEGRR--GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVK 242
GR +SGG+++R ++ + P L+ LDEP S LD + E +
Sbjct: 130 -------ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMI 182
Query: 243 DI-ARTGSIVLMTIHQPSYRIQ---MLL-DRIIVLARGRLVYMGSPVAL---PAHL--AG 292
G + H + + DRI V+ +GR++ SP L PA L A
Sbjct: 183 AALRANGKSAVFVSHD-----REEALQYADRIAVMKQGRILQTASPHELYRQPADLDAAL 237
Query: 293 F 293
F
Sbjct: 238 F 238
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 2e-22
Identities = 67/235 (28%), Positives = 104/235 (44%), Gaps = 57/235 (24%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSVRIDGKPVTT--- 127
L I+ GE++ ++GPSG+GKSTFL L LE G + IDG +
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNL------LEDFDEGEIIIDGINLKAKDT 93
Query: 128 ------SYMKMVSSYVMQDDQLFPMLTVFETFMFA-AEVRLPPSISRDEKKKRVYELLDQ 180
+ M V Q LFP +TV A +VR R++ + + ELLD+
Sbjct: 94 NLNKVREEVGM----VFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDK 146
Query: 181 LGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240
+GL+ H Y + +SGG+ +RV+I + +P ++ DEPTS LD V+
Sbjct: 147 VGLKDKAHAYPDS-----LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSV 201
Query: 241 VKDIARTGSIVLMTIHQPSYRIQMLL------------DRIIVLARGRLVYMGSP 283
+K +A G MT M++ DR++ + G ++ G P
Sbjct: 202 MKQLANEG----MT---------MVVVTHEMGFAREVGDRVLFMDGGYIIEEGKP 243
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 3e-22
Identities = 63/229 (27%), Positives = 107/229 (46%), Gaps = 41/229 (17%)
Query: 82 AIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSY----- 136
+ + ++GP+GAGKS FL+ +AG + G VR++G +T +
Sbjct: 21 EMGRDYCVLLGPTGAGKSVFLELIAGIVKPDR--GEVRLNGADITP-----LPPERRGIG 73
Query: 137 -VMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195
V QD LFP L+V+ + ++ R E+ +RV E+ ++LG+
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIA-------HLLD 121
Query: 196 RR--GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVL 252
R+ +SGGER+RV++ ++ +P LL LDEP S +D + ++E+++ + R +L
Sbjct: 122 RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL 181
Query: 253 MTIHQPSYRIQ----MLLDRIIVLARGRLVYMGSPVAL--PAHL--AGF 293
H ML D + V+ GR+V G L + A F
Sbjct: 182 HVTHD-----LIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEF 225
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 97.7 bits (244), Expect = 5e-22
Identities = 75/306 (24%), Positives = 127/306 (41%), Gaps = 65/306 (21%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSVRIDGKPVTTSYM 130
L +++ GE I+GPSGAGK+TF+ +AG L+ G + D + V ++
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAG------LDVPSTGELYFDDRLVASNGK 74
Query: 131 KMVSSY------VMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR 184
+V V Q L+P LT FE F +S++E +KRV E+ L +
Sbjct: 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIH 131
Query: 185 SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI 244
+ + R +SG +++RV++ ++ PSLL LDEP S LD+ +++D
Sbjct: 132 HVLNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA--------RMRDS 178
Query: 245 ARTGSIVLMTIHQPSYRIQ-------------MLL-DRIIVLARGRLVYMGSPVAL---P 287
AR ++ + R+ + DR+ VL +G+LV +G P L P
Sbjct: 179 ARA---LVKEVQS---RLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232
Query: 288 AHL--AGF--------GRTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQA 337
+ A G+ +G V D + +G+ P + + D +
Sbjct: 233 VSIQVASLIGEINELEGKVTNEGVVIGSLRFPVSVSSDRAIIGIRPEDVKLSKDVIKDDS 292
Query: 338 ARTPFP 343
Sbjct: 293 WILVGK 298
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 8e-22
Identities = 66/276 (23%), Positives = 118/276 (42%), Gaps = 67/276 (24%)
Query: 32 DAVVAAAGLKMIPGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIM 91
++ + K + +EF ++++S K+ L I+ G A++
Sbjct: 3 ESFSLTSHEKKFGVN-IEFSDVNFSYPKQ---------TNHRTLKSINFFIPSGTTCALV 52
Query: 92 GPSGAGKST-------FLDALAGRIAQGSLEGSVRIDG---KPVTTSYMKMVSSYVMQDD 141
G +G+GKST F DA EG ++I G + ++ + V QD
Sbjct: 53 GHTGSGKSTIAKLLYRFYDA----------EGDIKIGGKNVNKYNRNSIRSIIGIVPQDT 102
Query: 142 QLFPMLTVFETFMFAAEVRLPPSISRDE-----KKKRVYELLDQL--GLRSATHTYIGNE 194
LF T+ ++ + +E K ++Y+ ++ L T +GN
Sbjct: 103 ILFNE-TIKYNILYGK-----LDATDEEVIKATKSAQLYDFIEALPKKW----DTIVGN- 151
Query: 195 GRRGV--SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA--RTGSI 250
+G+ SGGER+R++I ++ P ++ DE TS LDS + Y + V+D+ RT I
Sbjct: 152 --KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRT-LI 208
Query: 251 V----LMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
+ L TI + II+L +G++V G+
Sbjct: 209 IIAHRLSTISSA--------ESIILLNKGKIVEKGT 236
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 92.9 bits (232), Expect = 2e-21
Identities = 62/235 (26%), Positives = 98/235 (41%), Gaps = 59/235 (25%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKST-------FLDALAGRIAQGSLEGSVRIDGKPVTT 127
L DIS +A I+A GPSG GKST F AG I IDG+P+
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI---------TIDGQPIDN 68
Query: 128 SYMKMVS-----SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDE-----KKKRVYEL 177
+ + + +V QD + T+ E + E + ++
Sbjct: 69 --ISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYTDEDLWQVLDLAFARSF 121
Query: 178 LDQL--GLRSATHTYIGNEGRRGV--SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTS 233
++ + L +T +G RGV SGG+R+R++I + P +L LDE T+ LDS S
Sbjct: 122 VENMPDQL----NTEVGE---RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
Query: 234 AYSVVEKVKDIA--RTGSIV----LMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
V + + + RT ++V L TI D+I + +G++ G
Sbjct: 175 ESMVQKALDSLMKGRT-TLVIAHRLSTIVDA--------DKIYFIEKGQITGSGK 220
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 5e-21
Identities = 59/242 (24%), Positives = 103/242 (42%), Gaps = 59/242 (24%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSVRIDGKPVTTSYM 130
L +S QA G++++I+G SG+GKSTFL + LE G++ ++G+ +
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINF------LEKPSEGAIIVNGQNINLVRD 75
Query: 131 KMVSSYVMQDDQ----------------LFPMLTVFETFMFA-AEVRLPPSISRDEKKKR 173
K V +Q L+ +TV E M A +V +S+ + ++R
Sbjct: 76 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARER 132
Query: 174 VYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTS 233
+ L ++G+ +SGG+++RVSI + +P +L DEPTS LD
Sbjct: 133 ALKYLAKVGIDERAQGKYPVH----LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPEL 188
Query: 234 AYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL------------DRIIVLARGRLVYMG 281
V+ ++ +A G T M++ +I L +G++ G
Sbjct: 189 VGEVLRIMQQLAEEG----KT---------MVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235
Query: 282 SP 283
P
Sbjct: 236 DP 237
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 91.0 bits (227), Expect = 1e-20
Identities = 56/220 (25%), Positives = 104/220 (47%), Gaps = 23/220 (10%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT-TSYMKMV 133
+ I + RG+I+ ++G +GAGK+T L A+AG + + +G + +G+ +T +
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAHVIN 79
Query: 134 S---SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY 190
+ V + ++FP LTV+E M A R + ++ L +L R
Sbjct: 80 RMGIALVPEGRRIFPELTVYENLMMGAYNR-KDKEGIKRDLEWIFSLFPRLKER------ 132
Query: 191 IGNEGRRGV----SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246
+ + SGGE++ ++IG ++ +P LL +DEP+ GL V E ++ I +
Sbjct: 133 -----LKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ 187
Query: 247 TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286
G+ +L+ + Q + + VL G++V G L
Sbjct: 188 EGTTILL-VEQNALGALKVAHYGYVLETGQIVLEGKASEL 226
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 2e-20
Identities = 68/294 (23%), Positives = 117/294 (39%), Gaps = 70/294 (23%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSVRIDGKPVTTSYM 130
L ++S + GE I+GP+GAGK+ FL+ +AG G + +DGK VT
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAG------FHVPDSGRILLDGKDVTD--- 66
Query: 131 KMVSSY------VMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR 184
+S V Q+ LFP + V + F ++ + + KRV + L +
Sbjct: 67 --LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK------KIKDPKRVLDTARDLKIE 118
Query: 185 SATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK---- 240
+SGGE++RV++ ++ P +L LDEP S LD +
Sbjct: 119 HLLDRNPLT-----LSGGEQQRVALARALVTNPKILLLDEPLSALDP--------RTQEN 165
Query: 241 ----VKDIAR-TGSIVLMTIHQPSYRIQ---MLL-DRIIVLARGRLVYMGSPVAL---PA 288
+ + + VL H Q ++ DRI V+ G+L+ +G P + P
Sbjct: 166 AREMLSVLHKKNKLTVLHITHD-----QTEARIMADRIAVVMDGKLIQVGKPEEIFEKPV 220
Query: 289 HL--AGF-GRTVPDGENSLEYLLDVIKEYDESTVGLGPLVLYQRDGIKPDQAAR 339
A F G N L+ + ++ + +G +V+ ++
Sbjct: 221 EGRVASFVGFE-----NVLKGRVISAEQ-GLLRIRVGEVVIDAAGDMEVGDQVY 268
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 3e-20
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 33/168 (19%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSVRIDGKPVTTSYM 130
+ +S Q GE++ ++GPSG+GK+T L +AG LE G V I GK VT
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG------LERPTKGDVWIGGKRVTD--- 81
Query: 131 KMVSSY------VMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR 184
+ V Q+ LF +TV++ F + P +DE RV ELL + L
Sbjct: 82 --LPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVP---KDEMDARVRELLRFMRLE 136
Query: 185 SATHTYIGNEGRR--GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLD 230
R +SGG+++RV++ + +P +L DEP + +D
Sbjct: 137 -------SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 4e-20
Identities = 75/292 (25%), Positives = 124/292 (42%), Gaps = 65/292 (22%)
Query: 15 SLLDMDK--SLAAKNNNNKDAVVAAAGLKMIPGHGLEFKNLSYSIMKKQKKDGVWITKEA 72
+DM+ L + KD A L+ G +EF+N+ +S ++
Sbjct: 21 MFIDMENMFDLLKEETEVKDLPGAGP-LRFQKGR-IEFENVHFSYADGRE---------- 68
Query: 73 YLLHDISGQAIRGEIMAIMGPSGAGKST-------FLDALAGRIAQGSLEGSVRIDG--- 122
L D+S + G+ +A++GPSGAGKST F D +G I RIDG
Sbjct: 69 -TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI---------RIDGQDI 118
Query: 123 KPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDE-----KKKRVYEL 177
VT + ++ V QD LF T+ + + + DE + +++
Sbjct: 119 SQVTQASLRSHIGVVPQDTVLFND-TIADNIRYG-----RVTAGNDEVEAAAQAAGIHDA 172
Query: 178 LDQLGLRSATHTYIGNEGRRGV--SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAY 235
+ Y G RG+ SGGE++RV+I I+ P ++ LDE TS LD+++
Sbjct: 173 IMAF-----PEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNER 227
Query: 236 SVVEKVKDIA--RTGSIV---LMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
++ + + RT +V L T+ D+I+V+ G +V G
Sbjct: 228 AIQASLAKVCANRTTIVVAHRLSTVVNA--------DQILVIKDGCIVERGR 271
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 88.7 bits (221), Expect = 9e-20
Identities = 61/261 (23%), Positives = 110/261 (42%), Gaps = 68/261 (26%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKST------- 100
+ F+N+ + + +L +I+ +GE++ I+G SG+GKST
Sbjct: 8 ITFRNIRFR----------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR 57
Query: 101 FLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS-----SYVMQDDQLFPMLTVFETFMF 155
F G++ IDG + V+QD+ L ++ +
Sbjct: 58 FYIPENGQV---------LIDGHDLAL--ADPNWLRRQVGVVLQDNVLLNR-SIIDNISL 105
Query: 156 AAEVRLPPSISRDE-----KKKRVYELLDQL--GLRSATHTYIGNEGRRGV--SGGERRR 206
A P +S ++ K ++ + +L G +T +G +G SGG+R+R
Sbjct: 106 AN-----PGMSVEKVIYAAKLAGAHDFISELREGY----NTIVGE---QGAGLSGGQRQR 153
Query: 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA--RTGSIV---LMTIHQPSYR 261
++I +++ P +L DE TS LD S + ++ + I RT I+ L T+
Sbjct: 154 IAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN---- 209
Query: 262 IQMLLDRIIVLARGRLVYMGS 282
DRIIV+ +G++V G
Sbjct: 210 ----ADRIIVMEKGKIVEQGK 226
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 1e-19
Identities = 69/304 (22%), Positives = 126/304 (41%), Gaps = 83/304 (27%)
Query: 21 KSLAAKNNNNKDAVVAA-----------------AGLKMIPGHGLEFKNLSYSIMKKQKK 63
K+L + + + + A + + G ++ K+++++
Sbjct: 299 KALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGE-VDVKDVTFT------- 350
Query: 64 DGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKST-------FLDALAGRIAQGSLEG 116
+ KE L +S +G+ +A++G SG+GKST F D +G I
Sbjct: 351 ---YQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI------- 400
Query: 117 SVRIDGKPVTTSYMKMVS-----SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDE-- 169
+DG V K+ + + V Q+ LF T+ +AAE +R++
Sbjct: 401 --CLDGHDVRD--YKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE----GEYTREQIE 451
Query: 170 ---KKKRVYELLDQL--GLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224
++ E ++ + GL T IG G +SGG+R+RV+I ++ +L LDE
Sbjct: 452 QAARQAHAMEFIENMPQGL----DTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDE 506
Query: 225 PTSGLDSTSAYSVVEKVKDIA--RTGSIV----LMTIHQPSYRIQMLLDRIIVLARGRLV 278
TS LD+ S ++ + ++ +T +V L TI Q D I+V+ G ++
Sbjct: 507 ATSALDTESERAIQAALDELQKNKT-VLVIAHRLSTIEQ--------ADEILVVDEGEII 557
Query: 279 YMGS 282
G
Sbjct: 558 ERGR 561
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 2e-19
Identities = 64/266 (24%), Positives = 112/266 (42%), Gaps = 77/266 (28%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKST------- 100
LEF+N++++ + +E L +I+ + G+ +A++G SG+GKST
Sbjct: 342 LEFRNVTFT----------YPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR 391
Query: 101 FLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS-----SYVMQDDQLFPMLTVFETFMF 155
F D G I +DG + + S + V Q+ +F
Sbjct: 392 FYDIDEGHI---------LMDGHDLRE--YTLASLRNQVALVSQN-----------VHLF 429
Query: 156 AAEVR------LPPSISRDE-----KKKRVYELLDQL--GLRSATHTYIGNEGRRGVSGG 202
V SR++ + + ++++ GL T IG G +SGG
Sbjct: 430 NDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGL----DTIIGENGVL-LSGG 484
Query: 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA--RTGSIV----LMTIH 256
+R+R++I ++ +L LDE TS LD+ S ++ + ++ RT S+V L TI
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRT-SLVIAHRLSTIE 543
Query: 257 QPSYRIQMLLDRIIVLARGRLVYMGS 282
Q D I+V+ G +V G+
Sbjct: 544 Q--------ADEIVVVEDGIIVERGT 561
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 7e-19
Identities = 67/276 (24%), Positives = 115/276 (41%), Gaps = 77/276 (27%)
Query: 37 AAGLKMIPGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGA 96
A +++ G ++ ++S+ + EA +L DI+ +GE +A +G SG
Sbjct: 330 AQPIEIKQGR-IDIDHVSFQ----------YNDNEAPILKDINLSIEKGETVAFVGMSGG 378
Query: 97 GKST-------FLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS-----SYVMQDDQLF 144
GKST F D +G+I IDG + S V QD
Sbjct: 379 GKSTLINLIPRFYDVTSGQI---------LIDGHNIKD--FLTGSLRNQIGLVQQD---- 423
Query: 145 PMLTVFETFMFAAEVRL-----PPSISRDE-----KKKRVYELLDQL--GLRSATHTYIG 192
+F+ V+ P+ + +E K ++ + L G T +G
Sbjct: 424 -------NILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGY----DTEVG 472
Query: 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA--RTGSI 250
G + +SGG+++R+SI ++ P +L LDE TS LD S + E + ++ RT ++
Sbjct: 473 ERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRT-TL 530
Query: 251 V----LMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
+ L TI D+I+V+ G +V G+
Sbjct: 531 IVAHRLSTITHA--------DKIVVIENGHIVETGT 558
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 7e-18
Identities = 50/234 (21%), Positives = 93/234 (39%), Gaps = 55/234 (23%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKST-------FLDALAGRIAQGSLEGSVRIDGKPVTT 127
L ++ G++ A++GP+G+GKST G++ +DG+P+
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV---------LLDGEPLVQ 85
Query: 128 ---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDE-----KKKRVYELLD 179
Y+ + V Q+ LF + E + L + + +E + ++ +
Sbjct: 86 YDHHYLHTQVAAVGQEPLLFGR-SFRENIAYG----LTRTPTMEEITAVAMESGAHDFIS 140
Query: 180 QL--GLRSATHTYIGNEGRRGV--SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAY 235
G T +G G SGG+R+ V++ +I KP LL LD TS LD+ +
Sbjct: 141 GFPQGY----DTEVGE---TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQL 193
Query: 236 SV---VEKV-KDIARTGSIV---LMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
V + + + +RT ++ L + I+ L G + G+
Sbjct: 194 RVQRLLYESPEWASRTVLLITQQLSLAERA--------HHILFLKEGSVCEQGT 239
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 1e-16
Identities = 66/250 (26%), Positives = 113/250 (45%), Gaps = 66/250 (26%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSVRIDGKPVTTSYM 130
L++I+ + GE MA++GPSG+GKST L +AG + G + D K VT
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG------IYKPTSGKIYFDEKDVTELPP 72
Query: 131 K-----MV-SSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR 184
K +V ++ L+P +TV++ F E+R R+E K+V E+ L +
Sbjct: 73 KDRNVGLVFQNWA-----LYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHID 124
Query: 185 SATHTYIGNEGR--RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVK 242
+ R +SGG+++RV+I ++ +P +L LDEP S LD A +E
Sbjct: 125 KLLN-------RYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD---ALLRLEVRA 174
Query: 243 DIARTGSIVLMTIHQPSYRIQ-------------MLL-DRIIVLARGRLVYMGSPVAL-- 286
++ R + + + + + DRI V+ G ++ +G+P +
Sbjct: 175 ELKR--------LQK---ELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYY 223
Query: 287 -PAHL--AGF 293
P + GF
Sbjct: 224 KPKYKFVGGF 233
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 2e-16
Identities = 72/259 (27%), Positives = 107/259 (41%), Gaps = 84/259 (32%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSVRIDGKPVTTSYM 130
+ +S + GE +A++GPSG GK+T L LAG + G + D V
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG------IYKPTSGEIYFDDVLVNDIPP 72
Query: 131 K-----MV-SSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR 184
K MV +Y L+P +TVFE F R IS+DE +KRV E+ +L +
Sbjct: 73 KYREVGMVFQNYA-----LYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLID 124
Query: 185 SATHTYIGNEGR--RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLD------------ 230
+ R +SGG+++RV++ ++ +P +L DEP S LD
Sbjct: 125 NLLD-------RKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIK 177
Query: 231 -------STSAYSV----VEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279
TS Y V E A MT + RI V +G+LV
Sbjct: 178 HLQQELGITSVY-VTHDQAE-----A-------MT----------MASRIAVFNQGKLVQ 214
Query: 280 MGSPVAL---PAHL--AGF 293
G+P + P ++ A F
Sbjct: 215 YGTPDEVYDSPKNMFVASF 233
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 2e-16
Identities = 62/219 (28%), Positives = 107/219 (48%), Gaps = 28/219 (12%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT----SYM 130
L ++ + G+ +A++G SG GKST + L R+ L+G V IDG+ + T
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTV-QLMQRLYD-PLDGMVSIDGQDIRTINVRYLR 463
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDE-----KKKRVYELLDQL--GL 183
+++ V Q+ LF T+ E + E ++ DE K+ Y+ + +L
Sbjct: 464 EIIG-VVSQEPVLFAT-TIAENIRYGRE-----DVTMDEIEKAVKEANAYDFIMKLPHQF 516
Query: 184 RSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKD 243
T +G G + +SGG+++R++I ++ P +L LDE TS LD+ S +VV+ D
Sbjct: 517 ----DTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESE-AVVQAALD 570
Query: 244 IARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
AR G ++ H+ S ++ D I G +V G+
Sbjct: 571 KAREGRTTIVIAHRLST-VR-NADVIAGFDGGVIVEQGN 607
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 3e-16
Identities = 65/235 (27%), Positives = 114/235 (48%), Gaps = 58/235 (24%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKST-------FLDALAGRIAQGSLEGSVRIDGKPVTT 127
L +S + +G+ +A++G SG GKST F D +AG + +DGK +
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV---------FLDGKEIKQ 1099
Query: 128 -------SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDE-----KKKRVY 175
+ + +VS Q+ LF ++ E + R +S +E K+ ++
Sbjct: 1100 LNVQWLRAQLGIVS----QEPILFDC-SIAENIAYGDNSR---VVSYEEIVRAAKEANIH 1151
Query: 176 ELLDQL--GLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTS 233
+ +D L +T +G++G + +SGG+++R++I ++ +P +L LDE TS LD+ S
Sbjct: 1152 QFIDSLPDKY----NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
Query: 234 AYSVVEKVKDIARTG--SIV----LMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
VV++ D AR G IV L TI Q + D I+V+ G++ G+
Sbjct: 1207 E-KVVQEALDKAREGRTCIVIAHRLSTI-QNA-------DLIVVIQNGKVKEHGT 1252
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 3e-16
Identities = 67/250 (26%), Positives = 111/250 (44%), Gaps = 66/250 (26%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSVRIDGKPVTTSYM 130
++ ++ GE + ++GPSG GK+T L +AG LE G + + VT
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG------LEEPTEGRIYFGDRDVTYLPP 80
Query: 131 K-----MV-SSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR 184
K MV SY ++P +TV+E F +++ +DE KRV + L +
Sbjct: 81 KDRNISMVFQSYA-----VWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIE 132
Query: 185 SATHTYIGNEGR--RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVK 242
+ R +SGG+R+RV++ I+ +P +L +DEP S LD A V
Sbjct: 133 ELLN-------RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD---AKLRVAMRA 182
Query: 243 DIARTGSIVLMTIHQPSYRIQ-------------MLL-DRIIVLARGRLVYMGSPVAL-- 286
+I + + Q +++ M + DRI V+ RG+L+ +GSP +
Sbjct: 183 EIKK--------LQQ---KLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231
Query: 287 -PAHL--AGF 293
P + A F
Sbjct: 232 RPNSVFVATF 241
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 6e-16
Identities = 79/265 (29%), Positives = 113/265 (42%), Gaps = 90/265 (33%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSVRIDGKPVTTSYM 130
+ ++S + GE M ++GPSG GK+T L +AG LE G + I K V
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG------LEEPSRGQIYIGDKLVADPEK 72
Query: 131 K-----------MV-SSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELL 178
MV SY L+P +TV++ F ++R + R E +RV E+
Sbjct: 73 GIFVPPKDRDIAMVFQSYA-----LYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVA 124
Query: 179 DQLGLRSATHTYIGNEGR--RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLD------ 230
+ LGL + R R +SGG+R+RV++G I+ KP + +DEP S LD
Sbjct: 125 ELLGLTELLN-------RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR 177
Query: 231 -------------STSAYSV----VEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273
T+ Y V VE A MT + DRI V+
Sbjct: 178 MRAELKKLQRQLGVTTIY-VTHDQVE-----A-------MT----------MGDRIAVMN 214
Query: 274 RGRLVYMGSPVAL---PAHL--AGF 293
RG L +GSP + PA+ AGF
Sbjct: 215 RGVLQQVGSPDEVYDKPANTFVAGF 239
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 1e-15
Identities = 68/262 (25%), Positives = 114/262 (43%), Gaps = 51/262 (19%)
Query: 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDAL 105
+ + +N +++ W + L+ I+ G ++A++G G GKS+ L AL
Sbjct: 2 NSITVRNATFT----------WARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSAL 51
Query: 106 AGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSI 165
+ + +EG V I G +YV Q + ++ E +F ++
Sbjct: 52 LAEMDK--VEGHVAIKGS----------VAYVPQQAWIQND-SLRENILFGCQL------ 92
Query: 166 SRDEKK-KRVYE---LLDQLG-LRSATHTYIGNEGRRGV--SGGERRRVSIGIDIIHKPS 218
+E + V + LL L L S T IG E +GV SGG+++RVS+ +
Sbjct: 93 --EEPYYRSVIQACALLPDLEILPSGDRTEIG-E--KGVNLSGGQKQRVSLARAVYSNAD 147
Query: 219 LLFLDEPTSGLDSTSAYSVVEKVKDIARTG-----SIVLMTIHQPSYRIQMLLDRIIVLA 273
+ D+P S +D+ + E V I G + +L+T H SY Q+ D IIV++
Sbjct: 148 IYLFDDPLSAVDAHVGKHIFENV--IGPKGMLKNKTRILVT-HSMSYLPQV--DVIIVMS 202
Query: 274 RGRLVYMGSPVALPAHLAGFGR 295
G++ MGS L A F
Sbjct: 203 GGKISEMGSYQELLARDGAFAE 224
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 4e-15
Identities = 54/267 (20%), Positives = 103/267 (38%), Gaps = 65/267 (24%)
Query: 44 PGHG-LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFL 102
P G + K+L+ + +L +IS G+ + ++G +G+GKST L
Sbjct: 15 PSGGQMTVKDLTAK----------YTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLL 64
Query: 103 DALAGRIAQGSLEGSVRIDGKPVTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEV 159
A R+ EG ++IDG + + + Q +F
Sbjct: 65 SAFL-RLLN--TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSG-----------TF 110
Query: 160 RL---PPSISRDEKKKRVYELLDQLGLRSATHTYIG------NEGRRGVSGGERRRVSIG 210
R P + D+ ++++ D++GLRS + G +G +S G ++ + +
Sbjct: 111 RKNLDPNAAHSDQ---EIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLA 167
Query: 211 IDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQP---------SYR 261
++ K +L LDEP++ LD T I+ T+ Q R
Sbjct: 168 RSVLSKAKILLLDEPSAHLD--------------PVTYQIIRRTLKQAFADCTVILCEAR 213
Query: 262 IQ--MLLDRIIVLARGRLVYMGSPVAL 286
I+ + D+ +V+ ++ S + L
Sbjct: 214 IEAMLECDQFLVIEENKVRQYDSILEL 240
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 4e-15
Identities = 51/242 (21%), Positives = 99/242 (40%), Gaps = 45/242 (18%)
Query: 49 EFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108
+N++ W +L DI+ + RG+++A+ G +GAGK++ L + G
Sbjct: 8 VMENVTAF----------WEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 57
Query: 109 IAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRD 168
+ EG ++ G+ S+ Q + P T+ E +F D
Sbjct: 58 LEP--SEGKIKHSGR----------ISFCSQFSWIMPG-TIKENIIFGVSY--------D 96
Query: 169 EKK-KRVYE---LLDQLG-LRSATHTYIGNEGRRGV--SGGERRRVSIGIDIIHKPSLLF 221
E + + V + L + + + +G E G+ SGG+R R+S+ + L
Sbjct: 97 EYRYRSVIKACQLEEDISKFAEKDNIVLG-E--GGITLSGGQRARISLARAVYKDADLYL 153
Query: 222 LDEPTSGLDSTSAYSVVEKV-KDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280
LD P LD + + E + + +L+T + + + D+I++L G +
Sbjct: 154 LDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT-SKMEHLKKA--DKILILHEGSSYFY 210
Query: 281 GS 282
G+
Sbjct: 211 GT 212
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 4e-15
Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 53/257 (20%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
LE ++L SI + +L ++ +GE+ A+MGP+GAGKST LAG
Sbjct: 4 LEIRDLWASIDGET------------ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQ-----LF---------PMLTVFETF 153
G + +DG+ + + D+ LF P +T+ F
Sbjct: 52 DPEYTVERGEILLDGENILE----------LSPDERARKGLFLAFQYPVEVPGVTI-ANF 100
Query: 154 MFAA-EVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGI 211
+ A + +L + E +V + L+ L + Y+ NE G SGGE++R I
Sbjct: 101 LRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-NE---GFSGGEKKRNEILQ 156
Query: 212 DIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRII- 270
++ +P+ LDE SGLD + V V + L+ H Y Q +L+ I
Sbjct: 157 LLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITH---Y--QRILNYIQP 211
Query: 271 ----VLARGRLVYMGSP 283
V+ GR+V G P
Sbjct: 212 DKVHVMMDGRVVATGGP 228
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 8e-15
Identities = 66/261 (25%), Positives = 102/261 (39%), Gaps = 57/261 (21%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
L K+L S+ K +L +S GE+ AIMGP+G+GKST LAG
Sbjct: 21 LSIKDLHVSVEDKA------------ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQ-----LF---------PMLTVFETF 153
R G+V GK + + + +F P ++ + F
Sbjct: 69 REDYEVTGGTVEFKGKDLLA----------LSPEDRAGEGIFMAFQYPVEIPGVSN-QFF 117
Query: 154 MFAA-----EVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRV 207
+ A R ++ R + + + E + L + + N G SGGE++R
Sbjct: 118 LQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSV-NV---GFSGGEKKRN 173
Query: 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLD 267
I + +P L LDE SGLD + V + V + ++ H Y Q +LD
Sbjct: 174 DILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH---Y--QRILD 228
Query: 268 RII-----VLARGRLVYMGSP 283
I VL +GR+V G
Sbjct: 229 YIKPDYVHVLYQGRIVKSGDF 249
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 3e-14
Identities = 76/270 (28%), Positives = 103/270 (38%), Gaps = 106/270 (39%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSVRIDGKPVTTSYM 130
DI+ GE + +GPSG GKST L +AG LE G + I K + +
Sbjct: 19 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG------LETITSGDLFIGEKRMNDTPP 72
Query: 131 K-----MV-SSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYE-------- 176
MV SY L+P L+V E F ++ ++ +RV +
Sbjct: 73 AERGVGMVFQSYA-----LYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLA 124
Query: 177 -LLD----QLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLD- 230
LLD L SGG+R+RV+IG ++ +PS+ LDEP S LD
Sbjct: 125 HLLDRKPKAL------------------SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
Query: 231 ------------------STSAYSV----VEKVKDIARTGSIVLMTIHQPSYRIQMLLDR 268
T Y V VE A MT L D+
Sbjct: 167 ALRVQMRIEISRLHKRLGRTMIY-VTHDQVE-----A-------MT----------LADK 203
Query: 269 IIVLARGRLVYMGSPVAL---PAHL--AGF 293
I+VL GR+ +G P+ L PA AGF
Sbjct: 204 IVVLDAGRVAQVGKPLELYHYPADRFVAGF 233
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 8e-14
Identities = 43/207 (20%), Positives = 79/207 (38%), Gaps = 32/207 (15%)
Query: 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMV 133
LL+ + R I GP+G GKST + A+A G ++G +
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN----GQVDGFPTQEE---------CR 496
Query: 134 SSYVMQDDQLFPM-LTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG 192
+ YV D +V + F+F + V K+ + + L + G
Sbjct: 497 TVYVEHDIDGTHSDTSVLD-FVFESGV---------GTKEAIKDKLIEFGFTDEMI---- 542
Query: 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVL 252
+SGG + ++++ ++ +L LDEPT+ LD+ + +V + T +
Sbjct: 543 AMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGIT---SI 599
Query: 253 MTIHQPSYRIQMLLDRIIVLARGRLVY 279
H S + + + II +L
Sbjct: 600 TISHD-SVFLDNVCEYIINYEGLKLRK 625
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 1e-10
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 167 RDEKKKRVYELLDQLGL--RSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224
R +K + E LGL +H+ I +SGG++ ++ + +P L+ LDE
Sbjct: 873 RPLTRKEIEEHCSMLGLDPEIVSHSRIRG-----LSGGQKVKLVLAAGTWQRPHLIVLDE 927
Query: 225 PTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
PT+ LD S ++ + +K+ V++ H + + L + + + GR+ G
Sbjct: 928 PTNYLDRDSLGALSKALKEFEGG---VIIITHS-AEFTKNLTEEVWAVKDGRMTPSG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 5e-05
Identities = 35/238 (14%), Positives = 73/238 (30%), Gaps = 20/238 (8%)
Query: 57 IMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEG 116
I+K + + + DI+ Q +A++GP+GAGKST ++ L G + G
Sbjct: 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP--TSG 728
Query: 117 SVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYE 176
V + +Y + + + T E E ++ +
Sbjct: 729 EVYT-HENCRIAY---IKQHAFAHIESHLDKTPSEYIQ--------WRFQTGEDRETMDR 776
Query: 177 LLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYS 236
Q+ A + G RR++ + + ++ S
Sbjct: 777 ANRQINENDAEAM-----NKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKS 831
Query: 237 VVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFG 294
I + + ++ +D LA G+ + + + H + G
Sbjct: 832 ERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPL-TRKEIEEHCSMLG 888
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 3e-13
Identities = 54/233 (23%), Positives = 99/233 (42%), Gaps = 48/233 (20%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKST-------FLDALAGRIAQGSLEGSVRIDGK 123
+L ++ G ++A++G +G+GKST +D G V +D
Sbjct: 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP---------ERGRVEVDEL 405
Query: 124 PVTTSYMKMVS---SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKR------- 173
V T +K + S V Q+ LF T+ E + + DE +
Sbjct: 406 DVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGR-----EDATDDEIVEAAKIAQIH 459
Query: 174 --VYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDS 231
+ L + + + G R SGG+++R+SI ++ KP +L LD+ TS +D
Sbjct: 460 DFIISLPEGY------DSRVE-RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDP 512
Query: 232 TSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQ--MLLDRIIVLARGRLVYMGS 282
+ +++ +K + G + I Q +I +L D+I+VL G++ G+
Sbjct: 513 ITEKRILDGLKRYTK-GCTTFI-ITQ---KIPTALLADKILVLHEGKVAGFGT 560
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 6e-13
Identities = 47/244 (19%), Positives = 98/244 (40%), Gaps = 46/244 (18%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
L DI+ + RG+++A+ G +GAGK++ L + G + EG ++ G+
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSGR----------I 101
Query: 135 SYVMQDDQLFPMLTVFETFMFAAEVR-----LPPSISRDEKK-KRVYE---LLDQLG-LR 184
S+ Q +++ ++ + DE + + V + L + +
Sbjct: 102 SFCSQ-----------NSWIMPGTIKENIIGVS----YDEYRYRSVIKACQLEEDISKFA 146
Query: 185 SATHTYIGNEGRRGV--SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKV- 241
+ +G E G+ SGG+R R+S+ + L LD P LD + + E
Sbjct: 147 EKDNIVLG-E--GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
Query: 242 KDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVPDGE 301
+ + +L+T + + + D+I++L G + G+ L F + +
Sbjct: 204 CKLMANKTRILVT-SKMEHLKKA--DKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCD 260
Query: 302 NSLE 305
+ +
Sbjct: 261 SFDQ 264
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 2e-10
Identities = 62/241 (25%), Positives = 96/241 (39%), Gaps = 60/241 (24%)
Query: 69 TKEAYLLHDISGQAIRGEIMAIMGPSGAGKST-------FLDALAGRIAQGSLEGSVRID 121
K+ +L DI+ G+ +A++GP+G+GK+T F D G+I +D
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI---------LVD 415
Query: 122 GKPVTT-------SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDE----- 169
G + S + +V +QD LF TV E + P + +E
Sbjct: 416 GIDIRKIKRSSLRSSIGIV----LQDTILFST-TVKENLKYGN-----PGATDEEIKEAA 465
Query: 170 KKKRVYELLDQL--GLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTS 227
K + L G T + + G +S G+R+ ++I + P +L LDE TS
Sbjct: 466 KLTHSDHFIKHLPEGY----ETVLTDNGE-DLSQGQRQLLAITRAFLANPKILILDEATS 520
Query: 228 GLDSTSAYSVVEKVKDIARTG--SIV----LMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281
+D T ++ G SI+ L TI D IIVL G +V MG
Sbjct: 521 NVD-TKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNA--------DLIIVLRDGEIVEMG 571
Query: 282 S 282
Sbjct: 572 K 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 1e-06
Identities = 82/611 (13%), Positives = 158/611 (25%), Gaps = 204/611 (33%)
Query: 49 EFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108
E ++ Y+ + K V + L + + + I G G+GK+ +A
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW----VALD 169
Query: 109 IAQGSLEGSVRIDGK-PVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISR 167
+ S ++ K ++ + + + ML + ++ + P SR
Sbjct: 170 VCL-----SYKVQCKMDFKIFWLNL--KNCNSPETVLEML---QKLLYQID---PNWTSR 216
Query: 168 DEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE--P 225
+ + + + RR + + ++ LL L
Sbjct: 217 SDHSSNIKLRIHSIQAEL----------RRLLK--SKP---------YENCLLVLLNVQN 255
Query: 226 TSGLDS---------TSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQM--LLDRIIVLAR 274
++ T+ + V A T I L ++ LL + +
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 275 GRLVYMGSPVAL---PAHLAGFGRTVPDGENSLEYLLDVIKEYDESTVG-----LGPLV- 325
L L P L+ ++ DG + + V + + + L P
Sbjct: 316 QDL----PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 326 --LYQRDGIKPDQAARTPFPKIPRTPASRSKHAISLRSQAFSFSTGNMTPGANSTQFDYY 383
++ R + P A IP + S ++
Sbjct: 372 RKMFDRLSVFPPSA------HIP--------------TILLSLI--------------WF 397
Query: 384 DDDDDDDEEFDKSLERKTAATPIINMQSGAYNNRLASQFYKDFSVWLYHGVVGTPRRRPS 443
D D L + + L + K+ ++ + +
Sbjct: 398 DVIKSDVMVVVNKLHKYS----------------LVEKQPKESTISIPSIYL-------- 433
Query: 444 WTPARTPGRTPAKTPISGA--RSFVSGEYYSTPQQNPSRLKTPVVFSTSTDPYAPSY--- 498
K A RS V ++Y+ P+ S P D Y S+
Sbjct: 434 --------ELKVKLENEYALHRSIV--DHYNIPKTFDSDDLIP----PYLDQYFYSHIGH 479
Query: 499 -------EQELEDMEEKVLDEPDHGPKFANPWLREVAVLSWRTALNVIRTPELFLSREIV 551
+ + LD R FL ++I
Sbjct: 480 HLKNIEHPERMTLFRMVFLD------------FR-------------------FLEQKIR 508
Query: 552 FAVMALILSSLFKNLSHHDFKTINRLLNFYIFAVCLVFFSSNDAVPTFIQERFI-----F 606
A S N K FY + ND P + ER + F
Sbjct: 509 HDSTAWNASGSILNTL-QQLK-------FY-----KPYICDND--PKY--ERLVNAILDF 551
Query: 607 IRETSHNAYRA 617
+ + N +
Sbjct: 552 LPKIEENLICS 562
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 4e-06
Identities = 77/570 (13%), Positives = 157/570 (27%), Gaps = 199/570 (34%)
Query: 297 VPDGENSLEYLLDVIKEYDESTVGLGPLVLYQR---DGIKPDQA-ARTPFPKIPRTPASR 352
D + L + E V Q+ + ++ + +P R P+
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMV--------QKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 353 SKHAISLRSQAFSFSTGNMTPGANSTQFDYYDDDDDDDEEFDK-SLERKTAATPIINMQS 411
++ I R + ++ D++ F K ++ R P + ++
Sbjct: 109 TRMYIEQRDRLYN-----------------------DNQVFAKYNVSRL---QPYLKLRQ 142
Query: 412 GAYNNR-----------------LASQFYKDFSV---------WLYHGVVGTP------- 438
R +A + V WL +P
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 439 -----RRRPSWTPARTPGRTPAKTPISGA----RSFVSGEYYSTPQ--------QNPSRL 481
+ P+WT +R+ + K I R + + Y QN
Sbjct: 203 QKLLYQIDPNWT-SRSDHSSNIKLRIHSIQAELRRLLKSKPY--ENCLLVLLNVQNAKAW 259
Query: 482 KT-----PVVFSTS----TDPYAPSYEQELE-DMEEKVLDEPDHGPKFANPWLREVAVLS 531
++ +T TD + + + D L + +L
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-YLD------ 312
Query: 532 WRTALNVIRTPELFLSREIV----FAVMALILSSL------FKNLSHHDFKTINRLLNFY 581
R + L RE++ + ++I S+ + N H + +
Sbjct: 313 -------CRPQD--LPREVLTTNPRRL-SIIAESIRDGLATWDNWKHVNCDKLTT----- 357
Query: 582 IFAVCLVFFSSNDAVPTFIQERF----IFIRETSHNAYRASSYVVSSLLVYLPFFGIQGL 637
I L + ++ F +F S+++ + LL + +
Sbjct: 358 IIESSLNVLEPAE-----YRKMFDRLSVF---------PPSAHIPTILLSLI----WFDV 399
Query: 638 TFAAITKLLLKLHS-SLLNFW---------MILFASLITTNAYVMLVSALVPSYIAGYAV 687
+ + ++ KLH SL+ I + L ++V Y
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT- 458
Query: 688 VIATTALFFLTCGFFLKRGHIPPYWR--WLHYI----SAIKYP-----FEALLTN-EF-K 734
F IPPY + +I I++P F + + F +
Sbjct: 459 --------------FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 735 GKECYNG----APGDLSPGPLGEVKLSKLH 760
K ++ A G + L ++K K +
Sbjct: 505 QKIRHDSTAWNASGSILN-TLQQLKFYKPY 533
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 9e-06
Identities = 84/548 (15%), Positives = 144/548 (26%), Gaps = 178/548 (32%)
Query: 380 FDYYDDDDD-----DDEEFDKSLERKTAATP-------IINMQSGAYNNRLASQFYKDFS 427
FD D D EE D + K A + +++ Q + ++
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 428 VWLYHGVVGTPRRRPSWTPARTPGRTPAKTPISGARSFVSGEYYSTPQQNPSRLKTPVVF 487
+L +P +T R P+ R ++ N VF
Sbjct: 93 -FL-------------MSPIKTEQRQPSMM----TRMYIE---QRDRLYN-----DNQVF 126
Query: 488 STSTDPYAPSYEQELEDMEEKVL-DEPD-----HGPK-FANPWL-----REVAVLS---- 531
+ Y S Q + + +L P G W+ V
Sbjct: 127 A----KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 532 ---WRTALNV--IRTPELFLSREIVFAVMALILSSLFKNLSH--------HDFKT-INRL 577
W LN+ +PE L E++ ++ I + H H + + RL
Sbjct: 183 KIFW---LNLKNCNSPETVL--EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 578 LNFYIFAVCL-----VFFSSNDAVPTF-IQERFIFI-RETSHNAYRASSYVVSSLLVYLP 630
L + CL V + A F + + + R + +++ L +
Sbjct: 238 LKSKPYENCLLVLLNV--QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 631 FFGIQGLTFAAITKLLLK------------------LHSSLL-----------NFW-MIL 660
LT + LLLK S++ + W +
Sbjct: 296 ----MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 661 FASLITTNAYVMLVSALVPSYIAGYAVVIATTALFFLTCGFFLKRGHIPP-----YWRWL 715
L T ++ L P+ F F HIP W
Sbjct: 352 CDKLTTIIE--SSLNVLEPAEYRKM----------FDRLSVFPPSAHIPTILLSLIW--- 396
Query: 716 HYISAIKYPFEALLTNEFKGKECYNGAPGDLS---PGPLGEVKLS-----KLH------- 760
+ ++ N+ P + + P E+K+ LH
Sbjct: 397 ---FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 761 NTTAALLRPDCTLIGED------IVYSMDIQIENIWFDILILLAWGVLYRLF--FYLVLR 812
N D D I + + IE+ LF +L R
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLK-NIEH-----------PERMTLFRMVFLDFR 501
Query: 813 FYSKNVRK 820
F + +R
Sbjct: 502 FLEQKIRH 509
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 12/110 (10%)
Query: 169 EKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDI------IHKPSLLFL 222
E R E +L + SGGER + + + + SLL L
Sbjct: 223 EVVVRAEENKVRLFVVWEGKERPLTFL----SGGERIALGLAFRLAMSLYLAGEISLLIL 278
Query: 223 DEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272
DEPT LD ++ ++ + V++ H ++ D +I +
Sbjct: 279 DEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHVIRI 326
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 820 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.98 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.96 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.96 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.96 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.96 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.95 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.94 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.91 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.91 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.9 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.89 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.88 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.87 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.87 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.86 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.84 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.83 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.83 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.82 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.82 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.81 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.8 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.8 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.8 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.8 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.79 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.78 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.77 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.77 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.77 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.76 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.76 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.75 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.75 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.74 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.74 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.72 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.72 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.71 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.7 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.69 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.68 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.68 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.67 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.67 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.67 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.66 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.64 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.64 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.61 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.6 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.6 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.58 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.58 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.58 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.54 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.5 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.5 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.49 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.48 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.45 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.42 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.42 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.41 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.41 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.41 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.39 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.38 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.36 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.35 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.35 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.34 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.31 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.3 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.27 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.27 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.25 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.23 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.22 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.21 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.17 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.17 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.17 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.1 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.07 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.02 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.01 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.01 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.99 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.98 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.93 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.89 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.89 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.88 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.85 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.81 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.77 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.73 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.73 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.71 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.68 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.67 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.65 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.63 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.46 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.43 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.4 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.36 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.36 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.35 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.33 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.31 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.21 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.18 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.17 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.16 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.1 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.08 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.03 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.95 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.95 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.93 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.93 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.93 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.91 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.88 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.84 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.83 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.83 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.82 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.78 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.76 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.73 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.72 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.71 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.65 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.57 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.54 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.54 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.53 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.49 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.42 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.41 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.4 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.4 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.36 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.32 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.29 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.21 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.16 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.16 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.1 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.05 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.01 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.95 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.92 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.91 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.89 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.88 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.86 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.81 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.79 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.77 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.77 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.74 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.74 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.74 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.71 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.7 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.67 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.64 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 96.62 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.59 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.57 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.57 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.53 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.52 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.49 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.46 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.44 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.39 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.31 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.2 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.19 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.18 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.15 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.14 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.13 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.13 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.11 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.1 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.08 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.07 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.04 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.92 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.91 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.89 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 95.79 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.76 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.76 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.68 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 95.68 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.67 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 95.57 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.56 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.51 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.46 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.42 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.37 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.33 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 95.33 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.29 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.29 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 95.26 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.25 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.25 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.22 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 95.22 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 95.2 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.17 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 95.08 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.08 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.08 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 95.07 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.01 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 95.0 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 94.99 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 94.97 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 94.94 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 94.91 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 94.87 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 94.86 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 94.86 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 94.84 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 94.8 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 94.74 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 94.71 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 94.65 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 94.65 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 94.6 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 94.56 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 94.54 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 94.51 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 94.51 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 94.47 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 94.46 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 94.43 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 94.41 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 94.37 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 94.36 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 94.36 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 94.34 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 94.31 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 94.31 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 94.29 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 94.27 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 94.25 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 94.23 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 94.22 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 94.2 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 94.17 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 94.16 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 94.14 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 94.14 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 94.13 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 94.13 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 94.11 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 94.11 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 94.1 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 94.1 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 94.07 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 94.06 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 94.04 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 94.03 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 94.01 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 94.01 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 94.01 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 93.96 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 93.95 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 93.95 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 93.94 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 93.93 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 93.9 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 93.89 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 93.88 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 93.88 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 93.86 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 93.85 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 93.81 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 93.81 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 93.78 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 93.77 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 93.75 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 93.7 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 93.69 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 93.64 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 93.63 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 93.61 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 93.6 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 93.58 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 93.56 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 93.56 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 93.55 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 93.54 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 93.5 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 93.5 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 93.44 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 93.42 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 93.41 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 93.38 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 93.38 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 93.37 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 93.36 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 93.35 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 93.34 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 93.33 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 93.32 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 93.3 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 93.3 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 93.27 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 93.25 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 93.24 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 93.23 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 93.21 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 93.19 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 93.19 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 93.18 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 93.17 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 93.16 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 93.12 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 93.12 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 93.09 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 93.09 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 93.07 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 93.05 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 93.03 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 93.0 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 92.99 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 92.97 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 92.97 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 92.92 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 92.92 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 92.91 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 92.9 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 92.89 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 92.88 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 92.88 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 92.86 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 92.86 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 92.85 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 92.85 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 92.84 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 92.83 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 92.82 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 92.81 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 92.81 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 92.79 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 92.77 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 92.76 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 92.75 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 92.75 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 92.72 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 92.72 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 92.71 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 92.71 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 92.7 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 92.68 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 92.68 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 92.67 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 92.66 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 92.58 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 92.56 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 92.53 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 92.47 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 92.44 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 92.43 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 92.39 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 92.36 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 92.36 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 92.36 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 92.35 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 92.35 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 92.34 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 92.28 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 92.27 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 92.2 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 92.18 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 92.14 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 92.1 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 92.08 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 92.08 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 92.0 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 91.96 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 91.92 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 91.91 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 91.91 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 91.89 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 91.88 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 91.84 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 91.76 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 91.7 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 91.61 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 91.58 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 91.57 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 91.52 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 91.49 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 91.39 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 91.35 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 91.31 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 91.27 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 91.16 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 91.11 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 90.98 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 90.95 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 90.9 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 90.83 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 90.82 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 90.64 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 90.43 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 90.42 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 90.35 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 90.24 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 90.15 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 90.09 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 89.83 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 89.7 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 89.58 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 89.43 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 89.42 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 89.39 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 89.39 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 89.33 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 89.31 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 89.26 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 89.24 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 89.24 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 88.85 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 89.18 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 89.09 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 88.98 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 88.92 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 88.61 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-49 Score=432.57 Aligned_cols=225 Identities=29% Similarity=0.460 Sum_probs=200.1
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+++||+++|+.+. ....+|+||||+|++||+++|+||||||||||+|+|+|+++ +++|+|.++|++
T Consensus 22 ~~mi~v~~ls~~y~~~~--------~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~ 91 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGT--------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQE 91 (366)
T ss_dssp -CCEEEEEEEEEEECSS--------SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred CceEEEEeEEEEeCCCC--------CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 34699999999996421 12459999999999999999999999999999999999985 468999999999
Q ss_pred CCCc------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 125 VTTS------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 125 ~~~~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
+... ..++.+|||||++.+++.+||+||+.++...+ ..++++.+++++++|+.+||.+..++++. +
T Consensus 92 i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~ 163 (366)
T 3tui_C 92 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPS-----N 163 (366)
T ss_dssp CSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTT-----T
T ss_pred CCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----h
Confidence 8642 13567999999999999999999999988764 35677788899999999999988877765 6
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++||+++. +.++||||++|++|++
T Consensus 164 LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~-~~~~aDrv~vl~~G~i 242 (366)
T 3tui_C 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDV-VKRICDCVAVISNGEL 242 (366)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHH-HHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999976 49999999999974 7889999999999999
Q ss_pred EEEcCccchhh
Q 003437 278 VYMGSPVALPA 288 (820)
Q Consensus 278 v~~G~~~~~~~ 288 (820)
++.|+++++..
T Consensus 243 v~~g~~~ev~~ 253 (366)
T 3tui_C 243 IEQDTVSEVFS 253 (366)
T ss_dssp EECCBHHHHHS
T ss_pred EEEcCHHHHHh
Confidence 99999988753
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-48 Score=405.55 Aligned_cols=222 Identities=26% Similarity=0.417 Sum_probs=191.4
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|+++. ..+.+|+|||+++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++..
T Consensus 2 l~~~~l~~~y~~~~--------~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~ 71 (235)
T 3tif_A 2 VKLKNVTKTYKMGE--------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTND 71 (235)
T ss_dssp EEEEEEEEEEEETT--------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTT
T ss_pred EEEEEEEEEeCCCC--------cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence 89999999996421 12459999999999999999999999999999999999985 468999999999864
Q ss_pred cc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCC
Q 003437 128 SY-------MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGV 199 (820)
Q Consensus 128 ~~-------~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~L 199 (820)
.. .++.+|||+|++.+++.+||+||+.++...+.....+.++..+++.++++.+||.+. .++++. +|
T Consensus 72 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~L 146 (235)
T 3tif_A 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN-----QL 146 (235)
T ss_dssp CCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGG-----GS
T ss_pred CCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChh-----hC
Confidence 21 134599999999999999999999998765422234567777889999999999875 366654 69
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |+|||++||+++ +..+||++++|++|+++
T Consensus 147 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~ 224 (235)
T 3tif_A 147 SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVE 224 (235)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999865 999999999996 34789999999999999
Q ss_pred EEcCccch
Q 003437 279 YMGSPVAL 286 (820)
Q Consensus 279 ~~G~~~~~ 286 (820)
..++++++
T Consensus 225 ~~~~~~~~ 232 (235)
T 3tif_A 225 REEKLRGF 232 (235)
T ss_dssp EEEECC--
T ss_pred EEcChhhh
Confidence 99988765
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-48 Score=427.65 Aligned_cols=219 Identities=27% Similarity=0.455 Sum_probs=199.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+||||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 3 ~l~~~~l~~~yg~------------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~ 68 (381)
T 3rlf_A 3 SVQLQNVTKAWGE------------VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 68 (381)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEeEEEEECC------------EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECC
Confidence 4999999999954 349999999999999999999999999999999999985 46899999999986
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. ..++.+|||+|++.++|.+||+||+.|+...+ ..++++.+++++++++.+||++..++++. +|||||||
T Consensus 69 ~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~-----~LSGGqrQ 140 (381)
T 3rlf_A 69 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQ 140 (381)
T ss_dssp TCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGG-----GSCHHHHH
T ss_pred CCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----HCCHHHHH
Confidence 43 23567999999999999999999999998765 35677888899999999999998887765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||++||+..+.++.+.|+++.++ |.|+|++|||++ ++..+||||++|++|+++..|+++
T Consensus 141 RVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~ 219 (381)
T 3rlf_A 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPL 219 (381)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEeCHH
Confidence 999999999999999999999999999999999999999765 999999999997 488899999999999999999999
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 220 ~l~~ 223 (381)
T 3rlf_A 220 ELYH 223 (381)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-48 Score=413.61 Aligned_cols=221 Identities=26% Similarity=0.451 Sum_probs=195.3
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|+++ ..+|+||||+|++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++
T Consensus 6 ~~l~i~~ls~~y~~~-----------~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i 72 (275)
T 3gfo_A 6 YILKVEELNYNYSDG-----------THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEEECTTS-----------CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred cEEEEEEEEEEECCC-----------CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 469999999999532 249999999999999999999999999999999999985 4689999999998
Q ss_pred CC-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 126 TT-----SYMKMVSSYVMQDDQ-LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 126 ~~-----~~~~~~~gyv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
.. ...++.+|||+|++. .+..+||+||+.|+.... ..+.++..++++++++.+||++..++.++ +|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTH-----CL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGG-----GS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----cC
Confidence 42 124567999999862 334689999999987643 35677778899999999999988888775 69
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA-RTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||+|||||+.+|++|||||||+|||+.++..++++|++++ ++|+|||++||+++. +..+||+|++|++|+++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~-~~~~~drv~~l~~G~i~ 223 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI-VPLYCDNVFVMKEGRVI 223 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS-GGGGCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH-HHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999997 569999999999985 77899999999999999
Q ss_pred EEcCccchhh
Q 003437 279 YMGSPVALPA 288 (820)
Q Consensus 279 ~~G~~~~~~~ 288 (820)
+.|+++++..
T Consensus 224 ~~g~~~~~~~ 233 (275)
T 3gfo_A 224 LQGNPKEVFA 233 (275)
T ss_dssp EEECHHHHTH
T ss_pred EECCHHHHhc
Confidence 9999988764
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-48 Score=426.48 Aligned_cols=219 Identities=29% Similarity=0.456 Sum_probs=195.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC-
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV- 125 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~- 125 (820)
.|+++||+++|++ +.+|+||||+|++||+++|+||||||||||||+|+|+++ +++|+|.++|+++
T Consensus 4 ~l~i~~ls~~y~~------------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i~ 69 (359)
T 3fvq_A 4 ALHIGHLSKSFQN------------TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIF 69 (359)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEEeEEEEECC------------EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 4999999999954 349999999999999999999999999999999999985 4689999999987
Q ss_pred ---CC-ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 003437 126 ---TT-SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201 (820)
Q Consensus 126 ---~~-~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG 201 (820)
.. ...++.+|||+|++.+||.+||+||+.|+...+ ..++++.+++++++++.+||++..++++. +|||
T Consensus 70 ~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSG 141 (359)
T 3fvq_A 70 SKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPH-----ELSG 141 (359)
T ss_dssp SSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGG-----GSCH
T ss_pred ccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCChh-----hCCH
Confidence 22 124567999999999999999999999986543 23456677899999999999998888775 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA-RTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
||||||+|||||+.+|++|||||||+|||+..+.++++.|+++. +.|.|+|++|||.+ ++..+||||++|++|+++..
T Consensus 142 Gq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~G~i~~~ 220 (359)
T 3fvq_A 142 GQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQT 220 (359)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999888875 46999999999997 48889999999999999999
Q ss_pred cCccchhh
Q 003437 281 GSPVALPA 288 (820)
Q Consensus 281 G~~~~~~~ 288 (820)
|+++++..
T Consensus 221 g~~~el~~ 228 (359)
T 3fvq_A 221 ASPHELYR 228 (359)
T ss_dssp ECHHHHHH
T ss_pred eCHHHHHh
Confidence 99988754
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-48 Score=409.51 Aligned_cols=219 Identities=27% Similarity=0.455 Sum_probs=193.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+||||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++.
T Consensus 6 ~l~i~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 6 KLHVIDLHKRYGG------------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNIN 71 (262)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred eEEEeeEEEEECC------------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcc
Confidence 5999999999953 249999999999999999999999999999999999985 46899999999885
Q ss_pred C----------------ccccceEEEEccCCCCCCCCCHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cc
Q 003437 127 T----------------SYMKMVSSYVMQDDQLFPMLTVFETFMFAA-EVRLPPSISRDEKKKRVYELLDQLGLRSA-TH 188 (820)
Q Consensus 127 ~----------------~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~ 188 (820)
. ...++.+|||+|++.+++.+||+||+.++. ..+ ..+.++.+++++++++.+||.+. .+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~ 148 (262)
T 1b0u_A 72 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQG 148 (262)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred ccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhc
Confidence 1 123456999999999999999999999864 322 23455667789999999999988 78
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCE
Q 003437 189 TYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 189 ~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 268 (820)
+.++ +|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++|+|||++||+++. +..+||+
T Consensus 149 ~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~~~~~d~ 222 (262)
T 1b0u_A 149 KYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF-ARHVSSH 222 (262)
T ss_dssp SCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHH-HHHHCSE
T ss_pred CCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCE
Confidence 7765 699999999999999999999999999999999999999999999998789999999999874 7789999
Q ss_pred EEEEeCCeEEEEcCccchhh
Q 003437 269 IIVLARGRLVYMGSPVALPA 288 (820)
Q Consensus 269 v~lL~~G~iv~~G~~~~~~~ 288 (820)
+++|++|++++.|+++++..
T Consensus 223 v~~l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 223 VIFLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999887753
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=407.15 Aligned_cols=219 Identities=30% Similarity=0.509 Sum_probs=193.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+||||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 24 ~l~i~~l~~~y~~------------~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~ 89 (263)
T 2olj_A 24 MIDVHQLKKSFGS------------LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLK 89 (263)
T ss_dssp SEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEESS
T ss_pred eEEEEeEEEEECC------------EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 5999999999953 249999999999999999999999999999999999985 46899999999884
Q ss_pred --Cc---cccceEEEEccCCCCCCCCCHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 127 --TS---YMKMVSSYVMQDDQLFPMLTVFETFMFAA-EVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 127 --~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
.. ..++.+|||+|++.+++.+||+||+.++. ..+ ..+.++..++++++++.+||.+..++.+. +||
T Consensus 90 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS 161 (263)
T 2olj_A 90 AKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPD-----SLS 161 (263)
T ss_dssp STTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSC
T ss_pred CccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChh-----hCC
Confidence 11 23456999999999999999999999964 332 23455667789999999999988887765 699
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
|||||||+|||||+.+|++|||||||+|||+.++..++++|++++++|+|||++||+++. +..+||++++|++|++++.
T Consensus 162 gGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~G~i~~~ 240 (263)
T 2olj_A 162 GGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGF-AREVGDRVLFMDGGYIIEE 240 (263)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-HHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999998779999999999874 7789999999999999999
Q ss_pred cCccchhh
Q 003437 281 GSPVALPA 288 (820)
Q Consensus 281 G~~~~~~~ 288 (820)
|+++++..
T Consensus 241 g~~~~~~~ 248 (263)
T 2olj_A 241 GKPEDLFD 248 (263)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHh
Confidence 99887753
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-47 Score=395.69 Aligned_cols=213 Identities=31% Similarity=0.405 Sum_probs=189.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++.
T Consensus 4 ~l~~~~l~~~y~~------------~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 4 ILRAENIKKVIRG------------YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVD 69 (224)
T ss_dssp EEEEEEEEEEETT------------EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEeEEEEECC------------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 4999999999953 249999999999999999999999999999999999985 46899999999985
Q ss_pred Ccc------c-cceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 127 TSY------M-KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 127 ~~~------~-~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
... . ++.++||+|++.+++.+||+||+.++...+ ..++++..++++++++.+||.+..++.++ +|
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 141 (224)
T 2pcj_A 70 YTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPY-----EL 141 (224)
T ss_dssp SSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GS
T ss_pred CCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hC
Confidence 421 1 256899999999999999999999986543 23455566789999999999988887775 69
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++. + .+||++++|++|++++
T Consensus 142 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~-~~~d~v~~l~~G~i~~ 219 (224)
T 2pcj_A 142 SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL-A-ELTHRTLEMKDGKVVG 219 (224)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-H-TTSSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-H-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999998779999999999874 5 7899999999999999
Q ss_pred EcCc
Q 003437 280 MGSP 283 (820)
Q Consensus 280 ~G~~ 283 (820)
.|+.
T Consensus 220 ~g~~ 223 (224)
T 2pcj_A 220 EITR 223 (224)
T ss_dssp EEEC
T ss_pred Eeee
Confidence 8863
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-47 Score=402.58 Aligned_cols=220 Identities=29% Similarity=0.397 Sum_probs=195.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+||||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 15 ~l~i~~l~~~y~~------------~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 15 AVVVKDLRKRIGK------------KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVV 80 (256)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred eEEEEEEEEEECC------------EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 4999999999953 249999999999999999999999999999999999985 46899999999985
Q ss_pred Cc--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 127 TS--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 127 ~~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
.. ..++.+|||+|++.+++.+||+||+.+....+ ..+.++..++++++++.+||.+..++.++ .||||||
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~ 152 (256)
T 1vpl_A 81 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMV 152 (256)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHH
T ss_pred ccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCChh-----hCCHHHH
Confidence 42 23567999999999999999999999976543 23455556789999999999988888765 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
|||+||+||+.+|++|||||||+|||+.++..++++|++++++|+|||++||+++. +..+||++++|++|++++.|+++
T Consensus 153 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~-~~~~~d~v~~l~~G~i~~~g~~~ 231 (256)
T 1vpl_A 153 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLE-VEFLCDRIALIHNGTIVETGTVE 231 (256)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHH-HTTTCSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-HHHHCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999998789999999999974 77889999999999999999988
Q ss_pred chhhh
Q 003437 285 ALPAH 289 (820)
Q Consensus 285 ~~~~~ 289 (820)
++...
T Consensus 232 ~~~~~ 236 (256)
T 1vpl_A 232 ELKER 236 (256)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87653
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-47 Score=417.96 Aligned_cols=220 Identities=28% Similarity=0.448 Sum_probs=197.6
Q ss_pred ceEEEEEEEEEE-CcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 46 HGLEFKNLSYSI-MKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 46 ~~L~~~nls~~~-~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
..|+++||+++| ++ +.+|+|+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|++
T Consensus 13 ~~l~~~~l~~~y~g~------------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 78 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG------------ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKR 78 (355)
T ss_dssp EEEEEEEEEECCTTS------------TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred ceEEEEEEEEEEcCC------------CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEE
Confidence 359999999998 42 249999999999999999999999999999999999985 468999999999
Q ss_pred CCCc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 125 VTTS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 125 ~~~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
+... ..++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||++..++++. +|||||
T Consensus 79 i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq 150 (355)
T 1z47_A 79 VTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPH-----ELSGGQ 150 (355)
T ss_dssp CTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHH
T ss_pred CCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHH
Confidence 8542 34567999999999999999999999987654 24566777899999999999988888775 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
||||+|||||+.+|++|||||||+|||+.++.++++.|+++.++ |.|+|++|||++. +..+||++++|++|+++..|+
T Consensus 151 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~-a~~~adri~vl~~G~i~~~g~ 229 (355)
T 1z47_A 151 QQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEE-ALEVADRVLVLHEGNVEQFGT 229 (355)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH-HHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH-HHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999765 9999999999874 788999999999999999999
Q ss_pred ccchhh
Q 003437 283 PVALPA 288 (820)
Q Consensus 283 ~~~~~~ 288 (820)
++++..
T Consensus 230 ~~~l~~ 235 (355)
T 1z47_A 230 PEEVYE 235 (355)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988753
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-47 Score=417.55 Aligned_cols=219 Identities=30% Similarity=0.483 Sum_probs=196.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 3 ~l~~~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 3 EIKLENIVKKFGN------------FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVT 68 (362)
T ss_dssp CEEEEEEEEESSS------------SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEeEEEEECC------------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 3999999999953 349999999999999999999999999999999999985 46899999999986
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. ..++.+|||+|+..++|++||+||+.|+...+ ..++++.+++++++++.+||++..++++. +|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPW-----QLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChh-----hCCHHHHH
Confidence 42 23567999999999999999999999987654 24566777889999999999998888775 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||+|||+..+.++.+.|+++.++ |.|+|++|||.+ ++..+||+|++|++|+++..|+++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~ 219 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPD 219 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999764 999999999987 478899999999999999999998
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 220 ~~~~ 223 (362)
T 2it1_A 220 EVYY 223 (362)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=418.52 Aligned_cols=219 Identities=30% Similarity=0.485 Sum_probs=196.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 3 ~l~~~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~ 68 (372)
T 1g29_1 3 GVRLVDVWKVFGE------------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEEETT------------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEEeEEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECc
Confidence 4899999999953 249999999999999999999999999999999999985 46899999999874
Q ss_pred C-------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 127 T-------SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 127 ~-------~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
. ...++.+|||+|+..+||++||+||+.|+...+ ..++++.+++++++++.+||++..++++. +|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~L 140 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPR-----EL 140 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGG-----GS
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCcc-----cC
Confidence 3 123567999999999999999999999987654 24566777889999999999998888775 69
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++ |.|+|++|||++ ++..+||++++|++|+++
T Consensus 141 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~ 219 (372)
T 1g29_1 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQ 219 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999764 999999999987 478899999999999999
Q ss_pred EEcCccchhh
Q 003437 279 YMGSPVALPA 288 (820)
Q Consensus 279 ~~G~~~~~~~ 288 (820)
..|+++++..
T Consensus 220 ~~g~~~~l~~ 229 (372)
T 1g29_1 220 QVGSPDEVYD 229 (372)
T ss_dssp EEECHHHHHH
T ss_pred EeCCHHHHHh
Confidence 9999988754
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-47 Score=398.25 Aligned_cols=219 Identities=27% Similarity=0.429 Sum_probs=189.8
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||||+|+|+++ +++|+|.++|++
T Consensus 4 ~~~l~~~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~ 69 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGA------------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQD 69 (240)
T ss_dssp SEEEEEEEEEEEETT------------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CceEEEEeEEEEECC------------eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEE
Confidence 346999999999953 249999999999999999999999999999999999985 468999999999
Q ss_pred CCCcc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCC
Q 003437 125 VTTSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLG-LRSATHTYIGNEGRRGV 199 (820)
Q Consensus 125 ~~~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~ig~~~~~~L 199 (820)
+.... .++.+|||+|++.+++.+||+||+.++.... .+.++..++++++++.++ |.+..++.++ .|
T Consensus 70 ~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~~-----~L 140 (240)
T 1ji0_A 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLGG-----TL 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBSS-----SS
T ss_pred CCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCChh-----hC
Confidence 85421 2345999999999999999999999864211 122344567889999995 9877777654 69
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++. +..+||++++|++|++++
T Consensus 141 SgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~G~i~~ 219 (240)
T 1ji0_A 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALG-ALKVAHYGYVLETGQIVL 219 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHH-HHHHCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999998789999999999874 778999999999999999
Q ss_pred EcCccchh
Q 003437 280 MGSPVALP 287 (820)
Q Consensus 280 ~G~~~~~~ 287 (820)
.|+++++.
T Consensus 220 ~g~~~~~~ 227 (240)
T 1ji0_A 220 EGKASELL 227 (240)
T ss_dssp EEEHHHHH
T ss_pred EcCHHHHh
Confidence 99887764
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-47 Score=417.86 Aligned_cols=219 Identities=29% Similarity=0.445 Sum_probs=195.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 3 ~l~~~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 3 SIRVVNLKKYFGK------------VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVN 68 (359)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEECC------------EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECC
Confidence 3899999999953 249999999999999999999999999999999999985 46899999999986
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. ..++.+|||+|+..++|++||+||+.|+...+ ..++++.+++++++++.+||++..+++++ +|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPT-----QLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHH
Confidence 42 23567999999999999999999999986432 23445556789999999999988888775 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||+|||+..+.++.+.|+++.++ |.|+|++|||.+. +..+||++++|++|+++..|+++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~-~~~~adri~vl~~G~i~~~g~~~ 219 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAE-AMTMASRIAVFNQGKLVQYGTPD 219 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHH-HHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH-HHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999764 9999999999874 78899999999999999999998
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 220 ~l~~ 223 (359)
T 2yyz_A 220 EVYD 223 (359)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-47 Score=403.42 Aligned_cols=219 Identities=23% Similarity=0.390 Sum_probs=191.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+||||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++.
T Consensus 7 ~l~i~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~ 72 (257)
T 1g6h_A 7 ILRTENIVKYFGE------------FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDIT 72 (257)
T ss_dssp EEEEEEEEEEETT------------EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEeeeEEEECC------------EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 5999999999953 249999999999999999999999999999999999985 46899999999985
Q ss_pred Cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHh-cCCC---------CCCHHHHHHHHHHHHHHcCCCcccccccc
Q 003437 127 TS----YMKMVSSYVMQDDQLFPMLTVFETFMFAAEV-RLPP---------SISRDEKKKRVYELLDQLGLRSATHTYIG 192 (820)
Q Consensus 127 ~~----~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~~~ig 192 (820)
.. ..++.++||+|++.+++.+||+||+.++... +... ....++..++++++++.+||++..++.++
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 152 (257)
T 1g6h_A 73 NKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 152 (257)
T ss_dssp TCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred CCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCch
Confidence 42 1245689999999999999999999987532 1000 01234456789999999999988888775
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 193 ~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++|+|||++||+++. +..+||++++|
T Consensus 153 -----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~d~v~~l 226 (257)
T 1g6h_A 153 -----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVM 226 (257)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST-TGGGCSEEEEE
T ss_pred -----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEE
Confidence 699999999999999999999999999999999999999999999998789999999999985 77899999999
Q ss_pred eCCeEEEEcCccc
Q 003437 273 ARGRLVYMGSPVA 285 (820)
Q Consensus 273 ~~G~iv~~G~~~~ 285 (820)
++|++++.|++++
T Consensus 227 ~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 227 FNGQIIAEGRGEE 239 (257)
T ss_dssp ETTEEEEEEESHH
T ss_pred ECCEEEEEeCHHH
Confidence 9999999999887
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-47 Score=403.21 Aligned_cols=217 Identities=27% Similarity=0.422 Sum_probs=192.0
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ +.+|+||||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++
T Consensus 10 ~~l~~~~l~~~~~~------------~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 75 (266)
T 4g1u_C 10 ALLEASHLHYHVQQ------------QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNL 75 (266)
T ss_dssp CEEEEEEEEEEETT------------EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEET
T ss_pred ceEEEEeEEEEeCC------------eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 46999999999954 359999999999999999999999999999999999985 4689999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG 202 (820)
... ..++.++|++|++.+++.+||+||+.++.... ...+.+++++++++.+||.+..++.++ +||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYR-----VLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGG-----GCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHH
Confidence 642 23456899999998888899999999876432 122345678999999999988888775 69999
Q ss_pred HHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 203 ERRRVSIGIDIIH------KPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 203 erqRv~ia~aL~~------~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
|||||+|||||+. +|++|||||||+|||+.++.+++++|++++++ |+|||++|||++. +..+||++++|++|
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~-~~~~~d~v~vl~~G 224 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNL-AALYADRIMLLAQG 224 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHH-HHHHCSEEEEEETT
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHH-HHHhCCEEEEEECC
Confidence 9999999999999 99999999999999999999999999999865 6799999999974 78899999999999
Q ss_pred eEEEEcCccchh
Q 003437 276 RLVYMGSPVALP 287 (820)
Q Consensus 276 ~iv~~G~~~~~~ 287 (820)
++++.|+++++.
T Consensus 225 ~i~~~g~~~~~~ 236 (266)
T 4g1u_C 225 KLVACGTPEEVL 236 (266)
T ss_dssp EEEEEECHHHHC
T ss_pred EEEEEcCHHHHh
Confidence 999999998875
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-47 Score=416.49 Aligned_cols=219 Identities=32% Similarity=0.488 Sum_probs=196.0
Q ss_pred eEEEEEEEEEECccccccccccccccc--ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAY--LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
.|+++||+++|++ +. +|+|+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|++
T Consensus 3 ~l~i~~l~~~y~~------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 68 (353)
T 1oxx_K 3 RIIVKNVSKVFKK------------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRL 68 (353)
T ss_dssp CEEEEEEEEEEGG------------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred EEEEEeEEEEECC------------EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 3899999999943 34 8999999999999999999999999999999999985 468999999998
Q ss_pred CCC------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 003437 125 VTT------SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 125 ~~~------~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
+.. ...++.+|||+|+..++|++||+||+.|+...+ ..++++.+++++++++.+||++..+++++ +
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~-----~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----E 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----G
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----h
Confidence 743 224567999999999999999999999986543 34566777899999999999998888775 6
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.++ |.|+|++|||++. +..+||++++|++|++
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~-~~~~adri~vl~~G~i 219 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD-IFAIADRVGVLVKGKL 219 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHH-HHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999764 9999999999974 7889999999999999
Q ss_pred EEEcCccchhh
Q 003437 278 VYMGSPVALPA 288 (820)
Q Consensus 278 v~~G~~~~~~~ 288 (820)
+..|+++++..
T Consensus 220 ~~~g~~~~l~~ 230 (353)
T 1oxx_K 220 VQVGKPEDLYD 230 (353)
T ss_dssp EEEECHHHHHH
T ss_pred EEEcCHHHHHh
Confidence 99999988753
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=417.45 Aligned_cols=219 Identities=27% Similarity=0.452 Sum_probs=189.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 11 ~l~~~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 11 EVKLENLTKRFGN------------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVT 76 (372)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred eEEEEEEEEEECC------------EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECC
Confidence 4999999999953 249999999999999999999999999999999999985 46899999999986
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. ..++.+|||+|+..+||++||+||+.|+...+ ..++++.+++++++++.+||++..++++. +|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPA-----QLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTT-----TCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHH
Confidence 42 23567999999999999999999999975432 24566777889999999999988887765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||++||+..+.++.+.|+++.++ |.|+|++|||.+. +..+||++++|++|+++..|+++
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~-a~~~adri~vl~~G~i~~~g~~~ 227 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE-AMTMGDRIAVMNRGQLLQIGSPT 227 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH-HHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999765 9999999999874 78899999999999999999998
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 228 ~l~~ 231 (372)
T 1v43_A 228 EVYL 231 (372)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8753
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-46 Score=391.02 Aligned_cols=213 Identities=29% Similarity=0.447 Sum_probs=187.4
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +|+|+|+++++ |+++|+||||||||||||+|+|+++ +++|+|.++|+++..
T Consensus 2 l~~~~l~~~y~~--------------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 64 (240)
T 2onk_A 2 FLKVRAEKRLGN--------------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITP 64 (240)
T ss_dssp CEEEEEEEEETT--------------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTT
T ss_pred EEEEEEEEEeCC--------------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 789999999841 59999999999 9999999999999999999999985 468999999999853
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ..++.+|||+|++.+++.+||+||+.++...+ .....+++++++++.+||.+..++.++ +||||||||
T Consensus 65 ~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqR 134 (240)
T 2onk_A 65 LPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQR 134 (240)
T ss_dssp SCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHH
T ss_pred CchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHH
Confidence 2 23567899999999999999999999864321 122236778999999999988887775 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
|+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++||+++. +..+||++++|++|++++.|++++
T Consensus 135 v~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~d~i~~l~~G~i~~~g~~~~ 213 (240)
T 2onk_A 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE-AAMLADEVAVMLNGRIVEKGKLKE 213 (240)
T ss_dssp HHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHH-HHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999976 49999999999874 778999999999999999999887
Q ss_pred hhh
Q 003437 286 LPA 288 (820)
Q Consensus 286 ~~~ 288 (820)
+..
T Consensus 214 ~~~ 216 (240)
T 2onk_A 214 LFS 216 (240)
T ss_dssp HHH
T ss_pred HHh
Confidence 643
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-46 Score=409.79 Aligned_cols=213 Identities=30% Similarity=0.476 Sum_probs=190.8
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|+ ++ +|+|+||++++||+++|+||||||||||||+|+|+++ +++|+|.++|+++..
T Consensus 2 l~~~~l~~~y~------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~ 66 (348)
T 3d31_A 2 IEIESLSRKWK------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTD 66 (348)
T ss_dssp EEEEEEEEECS------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTT
T ss_pred EEEEEEEEEEC------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCC
Confidence 78999999984 24 8999999999999999999999999999999999985 468999999999864
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ..++.+|||+|+..+||++||+||+.|+...+. .+++ ++++++++.+||++..+++++ +||||||||
T Consensus 67 ~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~~~-----~LSgGq~QR 135 (348)
T 3d31_A 67 LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRNPL-----TLSGGEQQR 135 (348)
T ss_dssp SCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSCGG-----GSCHHHHHH
T ss_pred CchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCChh-----hCCHHHHHH
Confidence 2 235678999999999999999999999876542 1222 678999999999998888775 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
|+|||||+.+|++|||||||++||+..+.++.+.|+++.+ .|.|+|++|||++ ++..+||++++|++|+++..|++++
T Consensus 136 valAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~ 214 (348)
T 3d31_A 136 VALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEE 214 (348)
T ss_dssp HHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999976 4999999999987 4788999999999999999999988
Q ss_pred hh
Q 003437 286 LP 287 (820)
Q Consensus 286 ~~ 287 (820)
+.
T Consensus 215 ~~ 216 (348)
T 3d31_A 215 IF 216 (348)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-46 Score=390.81 Aligned_cols=220 Identities=27% Similarity=0.358 Sum_probs=182.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+||||++++||+++|+||||||||||+|+|+|+....+++|+|.++|+++.
T Consensus 3 ~l~~~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 3 QLEIRDLWASIDG------------ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEEETT------------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred eEEEEeEEEEECC------------EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 4899999999953 2499999999999999999999999999999999998211356899999999985
Q ss_pred Ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-CccccccccCCCCCC-CC
Q 003437 127 TSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-RSATHTYIGNEGRRG-VS 200 (820)
Q Consensus 127 ~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~ig~~~~~~-LS 200 (820)
... .++.++||+|++.+++.+||+||+.+.............+..++++++++.+|| .+..++.++ . ||
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LS 145 (250)
T 2d2e_A 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN-----EGFS 145 (250)
T ss_dssp TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT-----CC--
T ss_pred CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc-----cCCC
Confidence 421 134479999999999999999999987532111112344556788999999999 477777664 5 99
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhh-cCEEEEEeCCeEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQML-LDRIIVLARGRLVY 279 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~lL~~G~iv~ 279 (820)
|||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++. +..+ ||++++|++|++++
T Consensus 146 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~~d~v~~l~~G~i~~ 224 (250)
T 2d2e_A 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI-LNYIQPDKVHVMMDGRVVA 224 (250)
T ss_dssp --HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG-GGTSCCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999997779999999999975 6667 59999999999999
Q ss_pred EcCcc
Q 003437 280 MGSPV 284 (820)
Q Consensus 280 ~G~~~ 284 (820)
.|+++
T Consensus 225 ~g~~~ 229 (250)
T 2d2e_A 225 TGGPE 229 (250)
T ss_dssp EESHH
T ss_pred EeCHH
Confidence 99876
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-46 Score=394.31 Aligned_cols=224 Identities=28% Similarity=0.389 Sum_probs=190.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+.... ..+.+|+|+|++|++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 2 ~l~~~~l~~~y~~~~~-------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTP-------LEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKK 72 (266)
T ss_dssp CEEEEEEEEEESTTST-------TCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEEecCCCc-------cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECc
Confidence 4899999999951100 00359999999999999999999999999999999999985 46899999999886
Q ss_pred CccccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCCCCCCCChHH
Q 003437 127 TSYMKMVSSYVMQDD-QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR--SATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~LSGGe 203 (820)
....++.+|||+|++ .+++.+||+||+.++.... .+.++..++++++++.+||. +..++.++ +|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----~LSgGq 143 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVPF-----FLSGGE 143 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCGG-----GSCHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCChh-----hCCHHH
Confidence 433456799999995 4566789999999875321 12222346788999999998 88777765 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 204 RRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 204 rqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++. +..+||++++|++|++++.|++
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~-~~~~~d~v~~l~~G~i~~~g~~ 222 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKVFDGTR 222 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT-TGGGCSEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999998779999999999985 7778999999999999999998
Q ss_pred cchhhh
Q 003437 284 VALPAH 289 (820)
Q Consensus 284 ~~~~~~ 289 (820)
+++...
T Consensus 223 ~~~~~~ 228 (266)
T 2yz2_A 223 MEFLEK 228 (266)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 887643
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-45 Score=388.19 Aligned_cols=224 Identities=27% Similarity=0.316 Sum_probs=189.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+||||+|++||+++|+||||||||||+|+|+|+....+++|+|.++|+++.
T Consensus 20 ~l~~~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~ 87 (267)
T 2zu0_C 20 MLSIKDLHVSVED------------KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 87 (267)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGG
T ss_pred eEEEEeEEEEECC------------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 5999999999953 2499999999999999999999999999999999998522356899999999875
Q ss_pred Cc---cc-cceEEEEccCCCCCCCCCHHHHHHHHHH-hc---CCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 003437 127 TS---YM-KMVSSYVMQDDQLFPMLTVFETFMFAAE-VR---LPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRR 197 (820)
Q Consensus 127 ~~---~~-~~~~gyv~Q~~~l~~~lTV~e~l~~~~~-~~---~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~ 197 (820)
.. .. ++.++||+|++.+++.+||.|++.+... .+ .....+.++..++++++++.+||. +..++.++ .
T Consensus 88 ~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----~ 163 (267)
T 2zu0_C 88 ALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN----V 163 (267)
T ss_dssp GSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----T
T ss_pred cCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----c
Confidence 32 11 2348999999999999999999987642 21 111234555567899999999996 46666653 1
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhh-cCEEEEEeCCe
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQML-LDRIIVLARGR 276 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~lL~~G~ 276 (820)
+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++. +..+ ||++++|++|+
T Consensus 164 ~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~~d~v~~l~~G~ 242 (267)
T 2zu0_C 164 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQGR 242 (267)
T ss_dssp TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG-GGTSCCSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH-HHhhcCCEEEEEECCE
Confidence 499999999999999999999999999999999999999999999997779999999999874 5665 89999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
+++.|+++++.
T Consensus 243 i~~~g~~~~~~ 253 (267)
T 2zu0_C 243 IVKSGDFTLVK 253 (267)
T ss_dssp EEEEECTTHHH
T ss_pred EEEEcCHHHHh
Confidence 99999988764
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-46 Score=396.61 Aligned_cols=222 Identities=23% Similarity=0.318 Sum_probs=186.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++ +.+|+||||+|++||+++|+||||||||||||+|+|+++ +++|+|.++|+++
T Consensus 20 ~~l~~~~l~~~y~~------------~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG------------KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMP 85 (279)
T ss_dssp EEEEEEEEEEEETT------------EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCC
T ss_pred ceEEEEeEEEEECC------------EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 35999999999953 249999999999999999999999999999999999985 4689999999987
Q ss_pred C--C---ccccceEEEEccCCCC--CCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 003437 126 T--T---SYMKMVSSYVMQDDQL--FPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 126 ~--~---~~~~~~~gyv~Q~~~l--~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
. . ...++.++||+|++.+ .+.+||+||+.++...... .....++..++++++++.+||.+..++.++
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----- 160 (279)
T 2ihy_A 86 GKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG----- 160 (279)
T ss_dssp C---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG-----
T ss_pred ccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh-----
Confidence 5 2 1235679999998753 3457999999886321100 011123445778999999999988888775
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE--EEEEcCccHHHHhhcCEEEEEeCC
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIV--LMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tv--i~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++|+|| |++||+++. +..+||++++|++|
T Consensus 161 ~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~-~~~~~d~v~~l~~G 239 (279)
T 2ihy_A 161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEE-ITANFSKILLLKDG 239 (279)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGG-CCTTCCEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHH-HHHhCCEEEEEECC
Confidence 699999999999999999999999999999999999999999999998779999 999999974 77899999999999
Q ss_pred eEEEEcCccchh
Q 003437 276 RLVYMGSPVALP 287 (820)
Q Consensus 276 ~iv~~G~~~~~~ 287 (820)
++++.|+++++.
T Consensus 240 ~i~~~g~~~~~~ 251 (279)
T 2ihy_A 240 QSIQQGAVEDIL 251 (279)
T ss_dssp EEEEEEEHHHHC
T ss_pred EEEEECCHHHHh
Confidence 999999887664
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-44 Score=378.41 Aligned_cols=211 Identities=24% Similarity=0.393 Sum_probs=182.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+. ++.+|+|+|++|++||+++|+||||||||||+|+|+|+++ +++|+|.
T Consensus 4 ~l~i~~l~~~y~~-----------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~------- 63 (253)
T 2nq2_C 4 ALSVENLGFYYQA-----------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE------- 63 (253)
T ss_dssp EEEEEEEEEEETT-----------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE-------
T ss_pred eEEEeeEEEEeCC-----------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE-------
Confidence 4999999999951 1249999999999999999999999999999999999985 4689998
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.++.++||+|++.+++.+||+||+.++...... ......+..++++++++.+||.+..++.++ +|||||||
T Consensus 64 ---~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~q 135 (253)
T 2nq2_C 64 ---VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT-----SLSGGQRQ 135 (253)
T ss_dssp ---ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHH
T ss_pred ---EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChh-----hCCHHHHH
Confidence 245689999999999899999999987532210 001123445778999999999988887765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++. +..+||++++|++|+ ++.|+++
T Consensus 136 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~G~-~~~g~~~ 213 (253)
T 2nq2_C 136 LILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQN-FKFGETR 213 (253)
T ss_dssp HHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHH-HHHHCSEEEEEETTE-EEEEEHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEeCCe-EecCCHH
Confidence 999999999999999999999999999999999999999876 9999999999974 778999999999999 9999887
Q ss_pred chh
Q 003437 285 ALP 287 (820)
Q Consensus 285 ~~~ 287 (820)
++.
T Consensus 214 ~~~ 216 (253)
T 2nq2_C 214 NIL 216 (253)
T ss_dssp HHC
T ss_pred HHh
Confidence 663
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=381.35 Aligned_cols=218 Identities=27% Similarity=0.464 Sum_probs=182.3
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
.+.++++||+++|++. ++.+|+||||+|++||+++|+||||||||||||+|+|+++ +++|+|.++|++
T Consensus 5 ~~~~~~~~l~~~y~~~----------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~ 72 (247)
T 2ff7_A 5 HHDITFRNIRFRYKPD----------SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHD 72 (247)
T ss_dssp CEEEEEEEEEEESSTT----------SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred cCceeEEEEEEEeCCC----------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 3569999999999321 1359999999999999999999999999999999999985 468999999999
Q ss_pred CCCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc------cCCC
Q 003437 125 VTTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYI------GNEG 195 (820)
Q Consensus 125 ~~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~i------g~~~ 195 (820)
+... ..++.++||+|++.+++ .||+||+.++.. ..+ .+++.++++.+++.+..++.. -++.
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~ 142 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTT
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCC
Confidence 8642 23567999999998887 599999987521 122 235677788888876554332 0233
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||+++. + ..||++++|++|
T Consensus 143 ~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~G 219 (247)
T 2ff7_A 143 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEKG 219 (247)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEECC
Confidence 56899999999999999999999999999999999999999999999995 59999999999974 4 459999999999
Q ss_pred eEEEEcCccchh
Q 003437 276 RLVYMGSPVALP 287 (820)
Q Consensus 276 ~iv~~G~~~~~~ 287 (820)
++++.|+++++.
T Consensus 220 ~i~~~g~~~~l~ 231 (247)
T 2ff7_A 220 KIVEQGKHKELL 231 (247)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEECCHHHHH
Confidence 999999988774
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=390.98 Aligned_cols=216 Identities=28% Similarity=0.446 Sum_probs=182.2
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+|+|++. +.+|+||||+|++||++||+||||||||||+|+|+|++. +.+|+|.++|+++
T Consensus 52 ~~i~~~~vs~~y~~~-----------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~i 118 (306)
T 3nh6_A 52 GRIEFENVHFSYADG-----------RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQDI 118 (306)
T ss_dssp CCEEEEEEEEESSTT-----------CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CeEEEEEEEEEcCCC-----------CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 459999999999532 359999999999999999999999999999999999985 4689999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-------ATHTYIGNEG 195 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~ 195 (820)
... ..++.++||+|++.+|+. ||+|||.++... ... +++.++++.+++.+ ..++.++. .
T Consensus 119 ~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~eNi~~~~~~-----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~ 187 (306)
T 3nh6_A 119 SQVTQASLRSHIGVVPQDTVLFND-TIADNIRYGRVT-----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGE-R 187 (306)
T ss_dssp TSBCHHHHHHTEEEECSSCCCCSE-EHHHHHHTTSTT-----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEEST-T
T ss_pred ccCCHHHHhcceEEEecCCccCcc-cHHHHHHhhccc-----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcC-C
Confidence 653 346779999999999964 999999986421 122 23455555555543 34566653 3
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
..+|||||||||+|||||+.+|+||||||||++||+.+...|++.|+++.+ ++|+|+++|+++. +.. ||+|++|++|
T Consensus 188 g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~~~-aD~i~vl~~G 264 (306)
T 3nh6_A 188 GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-VVN-ADQILVIKDG 264 (306)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-HHT-CSEEEEEETT
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-HHc-CCEEEEEECC
Confidence 457999999999999999999999999999999999999999999999865 7899999999985 554 9999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+++++..
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998865
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=386.61 Aligned_cols=219 Identities=24% Similarity=0.385 Sum_probs=182.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++. ..+.+|+||||+|++||+++|+||||||||||||+|+|+++ +++|+|.++|+++.
T Consensus 16 ~l~~~~l~~~y~~~---------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~ 84 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH---------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPLV 84 (271)
T ss_dssp CEEEEEEEECCTTC---------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG
T ss_pred eEEEEEEEEEeCCC---------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 59999999999531 01359999999999999999999999999999999999985 46899999999885
Q ss_pred Cc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHH-----HHHHHHHHHHHc--CCCccccccccCCCC
Q 003437 127 TS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDE-----KKKRVYELLDQL--GLRSATHTYIGNEGR 196 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~~~~ig~~~~ 196 (820)
.. ..++.++||+|++.+++ .||+||+.++.... ...++ ....+.++++.+ ||.+..+..++
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~---- 155 (271)
T 2ixe_A 85 QYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT----PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGN---- 155 (271)
T ss_dssp GBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGT----
T ss_pred cCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC----ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcC----
Confidence 32 23456999999999887 59999998864211 11111 123456778888 67766666554
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||+++. +. .||++++|++|
T Consensus 156 -~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~~-~~d~v~~l~~G 232 (271)
T 2ixe_A 156 -QLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-AE-RAHHILFLKEG 232 (271)
T ss_dssp -TSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-HT-TCSEEEEEETT
T ss_pred -CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-HH-hCCEEEEEECC
Confidence 6999999999999999999999999999999999999999999999975 59999999999874 54 59999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+++++..
T Consensus 233 ~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 233 SVCEQGTHLQLME 245 (271)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999887753
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-44 Score=378.45 Aligned_cols=208 Identities=23% Similarity=0.394 Sum_probs=183.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++ .+|+|+||++++||+++|+||||||||||||+|+|+++ ++ |+|.++|+++.
T Consensus 4 ~l~~~~l~~~----------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~ 64 (249)
T 2qi9_C 4 VMQLQDVAES----------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLE 64 (249)
T ss_dssp EEEEEEEEET----------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGG
T ss_pred EEEEEceEEE----------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECC
Confidence 4899999974 28999999999999999999999999999999999985 46 99999999875
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
. ...++.++||+|++.+++.+||+||+.++.. . ..+ .++++++++.+||++..++.++ +|||||
T Consensus 65 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq 131 (249)
T 2qi9_C 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---D-KTR----TELLNDVAGALALDDKLGRSTN-----QLSGGE 131 (249)
T ss_dssp GSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---S-TTC----HHHHHHHHHHTTCGGGTTSBGG-----GCCHHH
T ss_pred cCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc---c-CCc----HHHHHHHHHHcCChhHhcCChh-----hCCHHH
Confidence 3 1235669999999999999999999987521 1 112 4678899999999988887765 699999
Q ss_pred HHHHHHHHHHhcCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 204 RRRVSIGIDIIHKPS-------LLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 204 rqRv~ia~aL~~~P~-------lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|+|||++||+++. +..+||++++|++|+
T Consensus 132 ~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~d~v~~l~~G~ 210 (249)
T 2qi9_C 132 WQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNH-TLRHAHRAWLLKGGK 210 (249)
T ss_dssp HHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHCSEEEEEETTE
T ss_pred HHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEECCE
Confidence 999999999999999 999999999999999999999999998779999999999874 778999999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
+++.|+++++.
T Consensus 211 i~~~g~~~~~~ 221 (249)
T 2qi9_C 211 MLASGRREEVL 221 (249)
T ss_dssp EEEEEEHHHHS
T ss_pred EEEeCCHHHHh
Confidence 99999887764
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-44 Score=377.31 Aligned_cols=216 Identities=28% Similarity=0.438 Sum_probs=182.4
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ ++.+|+|||++|++||+++|+||||||||||||+|+|+++ +++|+|.++|+++..
T Consensus 2 l~~~~l~~~y~~-----------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 68 (243)
T 1mv5_A 2 LSARHVDFAYDD-----------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDN 68 (243)
T ss_dssp EEEEEEEECSSS-----------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTT
T ss_pred EEEEEEEEEeCC-----------CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhh
Confidence 889999999832 1359999999999999999999999999999999999985 468999999999853
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CCCCCC
Q 003437 128 ---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIG------NEGRRG 198 (820)
Q Consensus 128 ---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig------~~~~~~ 198 (820)
...++.++||+|++.+++. ||+||+.++.. + ... .++++++++.+++.+..++... ++.+..
T Consensus 69 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~ 139 (243)
T 1mv5_A 69 ISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVK 139 (243)
T ss_dssp TSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBC
T ss_pred CCHHHHHhhEEEEcCCCccccc-cHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCc
Confidence 2345678999999998874 99999987521 1 122 2457788999999876654421 233568
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||+++. +. .||++++|++|+++
T Consensus 140 LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~-~~-~~d~v~~l~~G~i~ 216 (243)
T 1mv5_A 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLST-IV-DADKIYFIEKGQIT 216 (243)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHH-HH-HCSEEEEEETTEEC
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHH-HH-hCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999997 69999999999874 54 69999999999999
Q ss_pred EEcCccchhh
Q 003437 279 YMGSPVALPA 288 (820)
Q Consensus 279 ~~G~~~~~~~ 288 (820)
+.|+++++..
T Consensus 217 ~~g~~~~~~~ 226 (243)
T 1mv5_A 217 GSGKHNELVA 226 (243)
T ss_dssp CCSCHHHHHH
T ss_pred EeCCHHHHHh
Confidence 9998877653
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-44 Score=367.88 Aligned_cols=203 Identities=20% Similarity=0.352 Sum_probs=174.5
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
+..|+++||+++|++ .+|+|+|+++++||+++|+||||||||||||+|+|+++ +++|+|.++|++
T Consensus 8 ~~~l~~~~ls~~y~~-------------~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~ 72 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK-------------PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVP 72 (214)
T ss_dssp -CEEEEEEEEEESSS-------------EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CceEEEEEEEEEeCC-------------eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEE
Confidence 346999999999842 39999999999999999999999999999999999985 468999999998
Q ss_pred CCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 125 VTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 125 ~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
+. ..++.++||+|++.+++.+||+||+.++...+. .. .+ .++++++++.+||++. ++.+. +||||||
T Consensus 73 ~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~---~~-~~-~~~~~~~l~~~gl~~~-~~~~~-----~LSgGqk 139 (214)
T 1sgw_A 73 IT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYG---VK-VN-KNEIMDALESVEVLDL-KKKLG-----ELSQGTI 139 (214)
T ss_dssp GG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTT---CC-CC-HHHHHHHHHHTTCCCT-TSBGG-----GSCHHHH
T ss_pred hh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC---Cc-hH-HHHHHHHHHHcCCCcC-CCChh-----hCCHHHH
Confidence 86 346779999999999999999999999865431 11 12 4578899999999877 66654 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++. +..+||+++++ .|+|
T Consensus 140 qrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 140 RRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS-YCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT-TSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999999999999998778999999999985 77788887754 4544
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-43 Score=372.40 Aligned_cols=210 Identities=22% Similarity=0.343 Sum_probs=181.3
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++.. ..+.+|+|+|++++ ||+++|+||||||||||||+|+|++ | ++|+|.++|+++..
T Consensus 2 l~~~~l~~~y~~~~--------~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~~ 69 (263)
T 2pjz_A 2 IQLKNVGITLSGKG--------YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVRK 69 (263)
T ss_dssp EEEEEEEEEEEEET--------TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGGG
T ss_pred EEEEEEEEEeCCCC--------ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECcc
Confidence 88999999995310 01359999999999 9999999999999999999999987 5 58999999998753
Q ss_pred ccccceEE-EEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCChHHHH
Q 003437 128 SYMKMVSS-YVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 128 ~~~~~~~g-yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSGGerq 205 (820)
...++.++ ||+|++.+ .+||+||+.+....+ .. ..++++++++.+||. +..++.++ +|||||||
T Consensus 70 ~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~~-----~LSgGqkq 135 (263)
T 2pjz_A 70 IRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKLY-----KLSAGQSV 135 (263)
T ss_dssp CSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBGG-----GSCHHHHH
T ss_pred hHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCChh-----hCCHHHHH
Confidence 21255789 99999887 789999999876543 11 135688999999998 87777765 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcC-EEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLD-RIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D-~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||+|||+.++..+++.|+++++ |||++||+++. +..+|| ++++|++|++++.|+++
T Consensus 136 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~-~~~~~d~~i~~l~~G~i~~~g~~~ 211 (263)
T 2pjz_A 136 LVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDM-LNLYKEYKAYFLVGNRLQGPISVS 211 (263)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGG-GGGCTTSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHH-HHHhcCceEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999998854 99999999975 678999 99999999999999987
Q ss_pred chh
Q 003437 285 ALP 287 (820)
Q Consensus 285 ~~~ 287 (820)
++.
T Consensus 212 ~l~ 214 (263)
T 2pjz_A 212 ELL 214 (263)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-43 Score=372.90 Aligned_cols=216 Identities=27% Similarity=0.422 Sum_probs=179.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+++. .+.+|+|||++|++||+++|+||||||||||+|+|+|+++ + +|+|.++|+++.
T Consensus 17 ~l~i~~l~~~y~~~~---------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~ 84 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQT---------NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVN 84 (260)
T ss_dssp CEEEEEEEECCTTCC---------SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGG
T ss_pred eEEEEEEEEEeCCCC---------cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhh
Confidence 499999999995421 1359999999999999999999999999999999999984 3 799999999885
Q ss_pred Cc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCCCC
Q 003437 127 TS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-------THTYIGNEGR 196 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~ig~~~~ 196 (820)
.. ..++.++||+|++.+++ .||+||+.++.. ... .+++.++++.+++.+. .++.++ +.+
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~-~~~ 153 (260)
T 2ghi_A 85 KYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVG-NKG 153 (260)
T ss_dssp GBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEES-SSS
T ss_pred hcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhcccccccccc-CCc
Confidence 32 24567999999999887 599999987521 112 2345666777766443 344443 345
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ |+|||++||+++. + ..||++++|++|+
T Consensus 154 ~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~G~ 230 (260)
T 2ghi_A 154 MKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNKGK 230 (260)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEETTE
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCE
Confidence 68999999999999999999999999999999999999999999999965 8999999999975 4 4599999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
+++.|+++++..
T Consensus 231 i~~~g~~~~l~~ 242 (260)
T 2ghi_A 231 IVEKGTHKDLLK 242 (260)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999887753
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-42 Score=357.53 Aligned_cols=204 Identities=24% Similarity=0.404 Sum_probs=167.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+.. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++ +.+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~~----------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g---- 69 (229)
T 2pze_A 6 EVVMENVTAFWEEG----------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG---- 69 (229)
T ss_dssp EEEEEEEEECSSTT----------SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS----
T ss_pred eEEEEEEEEEeCCC----------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC----
Confidence 59999999998521 2359999999999999999999999999999999999985 4689999998
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCCCCCC
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT-------HTYIGNEGRRGV 199 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~ig~~~~~~L 199 (820)
.++||+|++.+++. ||+||+.++.. ... .++.++++.+++.+.. ++.++ +.+..|
T Consensus 70 ------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~L 131 (229)
T 2pze_A 70 ------RISFCSQFSWIMPG-TIKENIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLG-EGGITL 131 (229)
T ss_dssp ------CEEEECSSCCCCSB-CHHHHHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBC-TTCTTS
T ss_pred ------EEEEEecCCcccCC-CHHHHhhccCC------cCh----HHHHHHHHHhCcHHHHHhCccccccccc-CCCCcC
Confidence 37999999999886 99999987531 111 1233445555554332 22332 234689
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK-VKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||+|||||+.+|++|||||||+|||+.++..+++. ++++. +|+|||++||+++. +. .||++++|++|+++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~-~~-~~d~v~~l~~G~i~ 208 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-LK-KADKILILHEGSSY 208 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-HH-HCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHH-HH-hCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999997 45664 48999999999874 54 59999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
+.|+++++.
T Consensus 209 ~~g~~~~~~ 217 (229)
T 2pze_A 209 FYGTFSELQ 217 (229)
T ss_dssp EEECHHHHH
T ss_pred EECCHHHHH
Confidence 999988764
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=387.82 Aligned_cols=216 Identities=22% Similarity=0.342 Sum_probs=183.3
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|... .+.+|+||||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++
T Consensus 18 ~~i~~~~l~~~y~~~----------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i 84 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEG----------GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSW 84 (390)
T ss_dssp CCEEEEEEEEESSSS----------SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBT
T ss_pred CeEEEEEEEEEecCC----------CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEEC
Confidence 459999999999531 2359999999999999999999999999999999999873 589999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------CCC
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGN------EGR 196 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~------~~~ 196 (820)
... ..++.+|||+|++.+|+ +||+||+.+.. ... .+++.++++.++|.+..++++.. +..
T Consensus 85 ~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g 153 (390)
T 3gd7_A 85 DSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153 (390)
T ss_dssp TSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTT
T ss_pred CcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhccccccccccccc
Confidence 643 23567999999999998 59999996421 112 35678899999998877766542 122
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++. .+.|+|+++||.+ ....||||++|++|+
T Consensus 154 ~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~G~ 230 (390)
T 3gd7_A 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEENK 230 (390)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEETTE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEECCE
Confidence 3499999999999999999999999999999999999999999999864 4899999999986 345699999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
|+..|+++++..
T Consensus 231 i~~~g~~~el~~ 242 (390)
T 3gd7_A 231 VRQYDSILELYH 242 (390)
T ss_dssp EEEESSHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999998864
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=356.75 Aligned_cols=208 Identities=27% Similarity=0.458 Sum_probs=165.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++. ++.+|+|+|++|++||+++|+||||||||||||+|+|+++ +++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~~----------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 3 SITVRNATFTWARS----------DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp CEEEEEEEEESCTT----------SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred eEEEEEEEEEeCCC----------CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 39999999999531 2359999999999999999999999999999999999985 4689999998
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH---HHHHcCCCc-cccccccCCCCCCCChH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYE---LLDQLGLRS-ATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~---~l~~lgL~~-~~~~~ig~~~~~~LSGG 202 (820)
.++||+|++.+ +.+||+||+.++... ..+ ..+++.+ +++.+++.+ ..++.++ ..+.+||||
T Consensus 67 ------~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgG 131 (237)
T 2cbz_A 67 ------SVAYVPQQAWI-QNDSLRENILFGCQL------EEP-YYRSVIQACALLPDLEILPSGDRTEIG-EKGVNLSGG 131 (237)
T ss_dssp ------CEEEECSSCCC-CSEEHHHHHHTTSCC------CTT-HHHHHHHHTTCHHHHTTSTTGGGSEES-TTSBCCCHH
T ss_pred ------EEEEEcCCCcC-CCcCHHHHhhCcccc------CHH-HHHHHHHHHhhHHHHHhcccccccccc-CCCCCCCHH
Confidence 38999999865 578999999876321 111 1111211 223333322 1222232 345689999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVK---DIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~---~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
|||||+|||||+.+|++|||||||+|||+.++..+++.|+ ++. +|+|||++||+++. + ..||++++|++|++++
T Consensus 132 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~G~i~~ 208 (237)
T 2cbz_A 132 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSGGKISE 208 (237)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999995 443 58999999999975 4 4799999999999999
Q ss_pred EcCccchhh
Q 003437 280 MGSPVALPA 288 (820)
Q Consensus 280 ~G~~~~~~~ 288 (820)
.|+++++..
T Consensus 209 ~g~~~~~~~ 217 (237)
T 2cbz_A 209 MGSYQELLA 217 (237)
T ss_dssp EECHHHHHH
T ss_pred eCCHHHHhh
Confidence 999887753
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=397.65 Aligned_cols=217 Identities=28% Similarity=0.412 Sum_probs=182.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++. ++++|+|+|+++++||+++|+||||||||||+|+|+|+++ +++|+|.+||+++
T Consensus 338 ~~i~~~~v~~~y~~~----------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~ 405 (578)
T 4a82_A 338 GRIDIDHVSFQYNDN----------EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNI 405 (578)
T ss_dssp CCEEEEEEEECSCSS----------SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEEG
T ss_pred CeEEEEEEEEEcCCC----------CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEEh
Confidence 469999999999642 2459999999999999999999999999999999999985 4689999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCC
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEG 195 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~ 195 (820)
... ..++.++||+|++.+|+. ||+||+.++.. ..+. +++.+.++..++ .+..++.+|+ .
T Consensus 406 ~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~ 474 (578)
T 4a82_A 406 KDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-----TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE-R 474 (578)
T ss_dssp GGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG-G
T ss_pred hhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC-----CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhcc-C
Confidence 642 346679999999999987 99999987631 1222 334455555554 3456677764 3
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
..+|||||||||+|||||+++|++|+|||||||||+.++..+.+.|+++. +++|+|+++|+++. + ..||+|++|++|
T Consensus 475 g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G 551 (578)
T 4a82_A 475 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIENG 551 (578)
T ss_dssp GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEETT
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECC
Confidence 45799999999999999999999999999999999999999999999985 47999999999985 4 459999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+++++.+
T Consensus 552 ~i~~~g~~~el~~ 564 (578)
T 4a82_A 552 HIVETGTHRELIA 564 (578)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-41 Score=393.45 Aligned_cols=218 Identities=27% Similarity=0.393 Sum_probs=185.7
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++ +++|+|.+||+++
T Consensus 340 ~~i~~~~v~~~y~~~----------~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~ 407 (582)
T 3b60_A 340 GDLEFRNVTFTYPGR----------EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDL 407 (582)
T ss_dssp CCEEEEEEEECSSSS----------SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEET
T ss_pred CcEEEEEEEEEcCCC----------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEc
Confidence 359999999999531 1359999999999999999999999999999999999985 4689999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-------ATHTYIGNEG 195 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~ 195 (820)
... ..++.++||+|++.+++. ||+||+.++.. + ..+ +++++++++.+++.+ ..|+.+|+ .
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~ 477 (582)
T 3b60_A 408 REYTLASLRNQVALVSQNVHLFND-TVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGE-N 477 (582)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCT-T
T ss_pred cccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccC-C
Confidence 642 345679999999999985 99999998631 1 122 245677888887764 34666664 3
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
..+||||||||++|||||+++|++|+|||||++||+.++..+.+.|+++.+ |+|+|+++|+++. + +.||++++|++|
T Consensus 478 ~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G 554 (582)
T 3b60_A 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADEIVVVEDG 554 (582)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSEEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH-H-HhCCEEEEEECC
Confidence 568999999999999999999999999999999999999999999999975 8999999999985 4 479999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+++++.+
T Consensus 555 ~i~~~g~~~~l~~ 567 (582)
T 3b60_A 555 IIVERGTHSELLA 567 (582)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEecCHHHHHH
Confidence 9999999988764
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=392.97 Aligned_cols=218 Identities=27% Similarity=0.408 Sum_probs=184.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++ +++|+|.+||+++
T Consensus 340 ~~i~~~~v~~~y~~~----------~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~ 407 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGK----------EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHDV 407 (582)
T ss_pred CeEEEEEEEEEcCCC----------CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEh
Confidence 359999999999631 1359999999999999999999999999999999999985 4689999999998
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-------THTYIGNEG 195 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~ig~~~ 195 (820)
.. ...++.++||+|++.+|+. ||+||+.++.. + ..+ +++++++++.+++.+. .|+.+|+ .
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~ 477 (582)
T 3b5x_A 408 RDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGE-N 477 (582)
T ss_pred hhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcC-C
Confidence 53 2356779999999999985 99999988631 1 122 3457778888877653 4555654 3
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
..+||||||||++|||||+++|++|+|||||++||+.++..+.+.|+++.+ |+|+|+++|+++. + +.||++++|++|
T Consensus 478 ~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G 554 (582)
T 3b5x_A 478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST-I-EQADEILVVDEG 554 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH-H-HhCCEEEEEECC
Confidence 468999999999999999999999999999999999999999999999865 8999999999974 4 469999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+++++.+
T Consensus 555 ~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 555 EIIERGRHADLLA 567 (582)
T ss_pred EEEEECCHHHHHh
Confidence 9999999988753
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-41 Score=394.31 Aligned_cols=217 Identities=24% Similarity=0.423 Sum_probs=181.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++. .+++|+|+|+++++||+++|+||||||||||+|+|+|+++ +++|+|.+||+++
T Consensus 340 ~~i~~~~v~~~y~~~----------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~i 407 (587)
T 3qf4_A 340 GSVSFENVEFRYFEN----------TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELDV 407 (587)
T ss_dssp CCEEEEEEEECSSSS----------SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSBG
T ss_pred CcEEEEEEEEEcCCC----------CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEEc
Confidence 459999999999642 2459999999999999999999999999999999999985 4689999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCC
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEG 195 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~ 195 (820)
... ..++.++||+|++.+|+. ||+||+.++.. ..+.+ ++.+.++..++ ++..++.+++ .
T Consensus 408 ~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~~----~~~~~~~~~~~~~~i~~l~~g~~~~~~~-~ 476 (587)
T 3qf4_A 408 RTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATDD----EIVEAAKIAQIHDFIISLPEGYDSRVER-G 476 (587)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCHH----HHHHHHHHTTCHHHHHTSSSGGGCEECS-S
T ss_pred ccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCHH----HHHHHHHHhCcHHHHHhcccchhhHhcC-C
Confidence 642 346779999999999976 99999987532 12332 23333333333 3456677764 4
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
+.+||||||||++|||||+++|++|||||||++||+.+...+.+.|+++. +|+|+|+++|+++. + ..||+|++|++|
T Consensus 477 ~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-~-~~~d~i~vl~~G 553 (587)
T 3qf4_A 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT-A-LLADKILVLHEG 553 (587)
T ss_dssp SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH-H-TTSSEEEEEETT
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH-H-HhCCEEEEEECC
Confidence 56899999999999999999999999999999999999999999999985 58999999999974 4 579999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+++++.+
T Consensus 554 ~i~~~g~~~el~~ 566 (587)
T 3qf4_A 554 KVAGFGTHKELLE 566 (587)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998865
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=390.78 Aligned_cols=216 Identities=27% Similarity=0.395 Sum_probs=180.7
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++. +++|+|+|+++++||+++|+||||||||||+|+|+|+++ +++|+|.+||+++
T Consensus 353 ~~i~~~~v~~~y~~~-----------~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~i 419 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKK-----------KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGIDI 419 (598)
T ss_dssp CCEEEEEEECCSSSS-----------SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred CeEEEEEEEEECCCC-----------CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEEh
Confidence 359999999999532 359999999999999999999999999999999999985 4689999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-------SATHTYIGNEG 195 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~ 195 (820)
... ..++.++||+|++.+|+. ||+||+.++.. ..++ +++.++++..++. +..++.+|+ .
T Consensus 420 ~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~ 488 (598)
T 3qf4_B 420 RKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNP-----GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTD-N 488 (598)
T ss_dssp GGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSST-----TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHH-H
T ss_pred hhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhcC-C
Confidence 642 356779999999999975 99999987521 1122 2344555555543 344555553 2
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
..+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. +|+|+|+++|+++. +. .||+|++|++|
T Consensus 489 g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~~-~~d~i~~l~~G 565 (598)
T 3qf4_B 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-IK-NADLIIVLRDG 565 (598)
T ss_dssp HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-HH-HCSEEEEECSS
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-HH-cCCEEEEEECC
Confidence 35799999999999999999999999999999999999999999999986 58999999999985 54 59999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+++++.+
T Consensus 566 ~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 566 EIVEMGKHDELIQ 578 (598)
T ss_dssp SEEECSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=349.11 Aligned_cols=199 Identities=25% Similarity=0.422 Sum_probs=153.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||++.+ +.+|+|+||+|++||+++|+||||||||||||+|+|+++ +++|+|.++|
T Consensus 40 ~l~~~~l~~~~--------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g---- 99 (290)
T 2bbs_A 40 SLSFSNFSLLG--------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG---- 99 (290)
T ss_dssp ----------C--------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS----
T ss_pred eEEEEEEEEcC--------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC----
Confidence 59999999852 249999999999999999999999999999999999985 4689999998
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCCCCCCC
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATH-------TYIGNEGRRGV 199 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~ig~~~~~~L 199 (820)
.++||+|++.+++. ||+||+. +. . ... .++.++++.+++.+..+ +.++ ..+..|
T Consensus 100 ------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~L 160 (290)
T 2bbs_A 100 ------RISFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLG-EGGITL 160 (290)
T ss_dssp ------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCC
T ss_pred ------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhc-CccCcC
Confidence 37999999998885 9999997 32 1 111 12344555556543322 2232 234689
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKV-KDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L-~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||+|||||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++||+++. + ..||++++|++|+++
T Consensus 161 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~-~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSY 237 (290)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HHSSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHH-H-HcCCEEEEEECCeEE
Confidence 999999999999999999999999999999999999999974 5554 48999999999864 5 469999999999999
Q ss_pred EEcCccchh
Q 003437 279 YMGSPVALP 287 (820)
Q Consensus 279 ~~G~~~~~~ 287 (820)
+.|+++++.
T Consensus 238 ~~g~~~~l~ 246 (290)
T 2bbs_A 238 FYGTFSELQ 246 (290)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHh
Confidence 999988774
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=414.75 Aligned_cols=220 Identities=28% Similarity=0.467 Sum_probs=188.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|+.+. +.++|+||||+|+|||.+||+||||||||||+++|.|++. +.+|+|++||.++
T Consensus 1075 g~I~f~nVsf~Y~~~~---------~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPERP---------EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEI 1143 (1321)
T ss_dssp CCEEEEEEEECCTTSC---------SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEET
T ss_pred CeEEEEEEEEeCCCCC---------CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEEh
Confidence 3599999999997532 3469999999999999999999999999999999999985 4689999999998
Q ss_pred CC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCC
Q 003437 126 TT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEG 195 (820)
Q Consensus 126 ~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~ 195 (820)
.. ..+|++++|||||+.+|+. |++|||.|+.. +...+. +.+.++++..++ ++..||.+|+.+
T Consensus 1144 ~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld---~~~~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G 1215 (1321)
T 4f4c_A 1144 KTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD---PSSVTM----AQVEEAARLANIHNFIAELPEGFETRVGDRG 1215 (1321)
T ss_dssp TTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC---TTTSCH----HHHHHHHHHTTCHHHHHTSTTTTCSEETTTS
T ss_pred hhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC---CCCCCH----HHHHHHHHHhCChHHHHcCcCCCCCEecCCC
Confidence 75 3467889999999999987 99999987632 222333 345556665554 556899998654
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
..||||||||++|||||+++|+|||||||||+||+.+...|.+.|+++. +|+|+|+++|.++. + ..||+|++|++|
T Consensus 1216 -~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT-i-~~aD~I~Vld~G 1291 (1321)
T 4f4c_A 1216 -TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT-V-MNADCIAVVSNG 1291 (1321)
T ss_dssp -CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST-T-TTCSEEEEESSS
T ss_pred -cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH-H-HhCCEEEEEECC
Confidence 5799999999999999999999999999999999999999999998865 48999999999985 4 469999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
+|+++|+++++++
T Consensus 1292 ~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1292 TIIEKGTHTQLMS 1304 (1321)
T ss_dssp SEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999975
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-39 Score=408.56 Aligned_cols=218 Identities=28% Similarity=0.445 Sum_probs=188.4
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+|+|+.. .++++|+|+|++|++||.+||+||||||||||+++|.|++. +.+|+|.+||.++
T Consensus 414 g~I~~~nvsF~Y~~~---------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~~i 482 (1321)
T 4f4c_A 414 GDITVENVHFTYPSR---------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGVDV 482 (1321)
T ss_dssp CCEEEEEEEECCSSS---------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CcEEEEEeeeeCCCC---------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc--cccCcccCCCccc
Confidence 359999999999753 23569999999999999999999999999999999999885 5789999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCC
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLG-------LRSATHTYIGNEG 195 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~ig~~~ 195 (820)
... .+|+.++||+|++.+|.. ||+|||.|+.. ..+. +++.++++..+ |++..||.+|+.+
T Consensus 483 ~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-----~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G 552 (1321)
T 4f4c_A 483 RDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKE-----GITR----EEMVAACKMANAEKFIKTLPNGYNTLVGDRG 552 (1321)
T ss_dssp TTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESSSS
T ss_pred hhccHHHHhhcccccCCcceeeCC-chhHHHhhhcc-----cchH----HHHHHHHHHccchhHHHcCCCCCccEecCCC
Confidence 753 467789999999999987 99999998732 2333 33555555544 4567899999765
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
. .||||||||++|||||+++|+|||||||||+||+.+...+.+.|+++.+ |+|+|+++|+++. .+.||+|++|++|
T Consensus 553 ~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls~--i~~aD~Iivl~~G 628 (1321)
T 4f4c_A 553 T-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLST--IRNADLIISCKNG 628 (1321)
T ss_dssp C-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTTT--TTTCSEEEEEETT
T ss_pred C-CCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHHH--HHhCCEEEEeeCC
Confidence 4 6999999999999999999999999999999999999999999998864 8999999999984 4679999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
+|++.|+.+++..
T Consensus 629 ~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 629 QVVEVGDHRALMA 641 (1321)
T ss_dssp EEEEEECHHHHHT
T ss_pred eeeccCCHHHHHH
Confidence 9999999999875
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=394.46 Aligned_cols=220 Identities=30% Similarity=0.483 Sum_probs=182.7
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+|+|+.+. +.++|+|||+++++||++||+||||||||||+++|+|+++ +++|+|.+||+++
T Consensus 386 g~i~~~~v~~~y~~~~---------~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~--~~~G~i~i~g~~i 454 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRK---------EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD--PLDGMVSIDGQDI 454 (1284)
T ss_dssp CCEEEEEEEECCSSTT---------SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC--CSEEEEEETTEEG
T ss_pred CeEEEEEEEEEcCCCC---------CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEH
Confidence 3599999999996431 2469999999999999999999999999999999999885 4689999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCCCCC
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRV-----YELLDQLGLRSATHTYIGNEGRR 197 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~ig~~~~~ 197 (820)
... ..++.+|||+|++.+++. ||+||+.++.. ..+.++..+.+ .+.++ .+.+..|+.+|+. ..
T Consensus 455 ~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~t~~~~~-g~ 525 (1284)
T 3g5u_A 455 RTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMDEIEKAVKEANAYDFIM--KLPHQFDTLVGER-GA 525 (1284)
T ss_dssp GGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHHHHHHHHHHTTCHHHHH--HSTTGGGCCCSSS-SC
T ss_pred HhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHH--hccccccccccCC-CC
Confidence 642 356679999999999987 99999998742 12333322222 12222 2345677888754 45
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
+|||||||||+|||||+.+|+|||||||||+||+.+...+.+.|+++. +|+|+|+++|+++. +. .||+|++|++|++
T Consensus 526 ~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-i~-~~d~i~vl~~G~i 602 (1284)
T 3g5u_A 526 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST-VR-NADVIAGFDGGVI 602 (1284)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH-HT-TCSEEEECSSSCC
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-HH-cCCEEEEEECCEE
Confidence 799999999999999999999999999999999999999999998875 48999999999985 54 4999999999999
Q ss_pred EEEcCccchhh
Q 003437 278 VYMGSPVALPA 288 (820)
Q Consensus 278 v~~G~~~~~~~ 288 (820)
++.|+++++..
T Consensus 603 ~~~g~~~~l~~ 613 (1284)
T 3g5u_A 603 VEQGNHDELMR 613 (1284)
T ss_dssp CCEECHHHHHH
T ss_pred EEECCHHHHHh
Confidence 99999998864
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-37 Score=387.86 Aligned_cols=220 Identities=27% Similarity=0.450 Sum_probs=182.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|+++. +.++|+|+|++|++||++||+||||||||||+++|+|+++ +.+|+|.+||+++
T Consensus 1029 g~i~~~~v~~~y~~~~---------~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i 1097 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRP---------SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEI 1097 (1284)
T ss_dssp CCEEEEEEEBCCSCGG---------GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCT
T ss_pred CcEEEEEEEEECCCCC---------CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEc
Confidence 4599999999996431 2359999999999999999999999999999999999985 4689999999998
Q ss_pred CCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCCC
Q 003437 126 TTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQL-------GLRSATHTYIGNEG 195 (820)
Q Consensus 126 ~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~ig~~~ 195 (820)
... ..++.++||+|++.+++ .||+||+.++...+ ..+.++. .+.++.. .+.+..|+.+|+.
T Consensus 1098 ~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~---~~~~~~i----~~~~~~~~~~~~i~~l~~gldt~vge~- 1168 (1284)
T 3g5u_A 1098 KQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR---VVSYEEI----VRAAKEANIHQFIDSLPDKYNTRVGDK- 1168 (1284)
T ss_dssp TSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC---CCCHHHH----HHHHHHHTCHHHHSSTTTGGGCBCSTT-
T ss_pred ccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCC---CCCHHHH----HHHHHHhCcHHHHHhCccccccccCCC-
Confidence 642 35677999999998886 59999998753211 2233332 2333333 3455678888854
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
...|||||||||+|||||+.+|+||||||||+|||+.+...+.+.|+++ .+|+|||+++|+++. + ..||||++|++|
T Consensus 1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~G 1245 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQNG 1245 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEETB
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEECC
Confidence 4679999999999999999999999999999999999999999999885 458999999999985 5 459999999999
Q ss_pred eEEEEcCccchhh
Q 003437 276 RLVYMGSPVALPA 288 (820)
Q Consensus 276 ~iv~~G~~~~~~~ 288 (820)
++++.|+++++.+
T Consensus 1246 ~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1246 KVKEHGTHQQLLA 1258 (1284)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-36 Score=351.91 Aligned_cols=205 Identities=26% Similarity=0.382 Sum_probs=177.4
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++|+++.|++ ..|+++|+++++||+++|+||||||||||||+|+|+++ +++|+|.+
T Consensus 356 ~~l~~~~l~~~~~~-------------~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----- 415 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS-------------FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----- 415 (607)
T ss_dssp EEEEECCEEEECSS-------------CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC-----
T ss_pred eEEEEeceEEEecc-------------eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE-----
Confidence 46999999998842 26899999999999999999999999999999999885 46799975
Q ss_pred CCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
...++|++|+..+.+.+||.|++....... ....++++++++.+||.+..++.++ .|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHH
T ss_pred -----eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHH
Confidence 235899999988778899999887641110 0123568889999999988888776 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeC--CeEEEEcC
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLAR--GRLVYMGS 282 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~--G~iv~~G~ 282 (820)
||+||++|+.+|++|||||||+|||+.++..++++|+++++ .|.|||+++||+.. +..+|||+++|++ |+++..|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~-~~~~adrv~vl~~~~g~~~~~g~ 557 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM-IDYVSDRLIVFEGEPGRHGRALP 557 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEcCCcceEEecCC
Confidence 99999999999999999999999999999999999999974 69999999999975 7889999999986 88899999
Q ss_pred ccchhh
Q 003437 283 PVALPA 288 (820)
Q Consensus 283 ~~~~~~ 288 (820)
++++..
T Consensus 558 p~~~~~ 563 (607)
T 3bk7_A 558 PMGMRE 563 (607)
T ss_dssp CEEHHH
T ss_pred HHHHHh
Confidence 988765
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=348.86 Aligned_cols=205 Identities=25% Similarity=0.383 Sum_probs=176.4
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++|+++.|++ ..|+++|+++++||+++|+||||||||||+|+|+|+++ +.+|+|.+
T Consensus 286 ~~l~~~~l~~~~~~-------------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----- 345 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS-------------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----- 345 (538)
T ss_dssp EEEEECCEEEEETT-------------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC-----
T ss_pred eEEEEeeEEEEECC-------------EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE-----
Confidence 46999999998842 26899999999999999999999999999999999885 46799975
Q ss_pred CCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
...++||+|+....+.+||.|++........ ...++++++++.+||.+..++.++ .|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDREVN-----ELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHH
T ss_pred -----CceEEEEecCCcCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHH
Confidence 2358999999887788999998865411110 013567889999999887777775 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeC--CeEEEEcC
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLAR--GRLVYMGS 282 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~--G~iv~~G~ 282 (820)
||+||++|+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||+.. +..+||||++|++ |+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~-~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM-IDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH-HHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEeCCcceEeecCC
Confidence 99999999999999999999999999999999999999974 69999999999975 7889999999986 88999999
Q ss_pred ccchhh
Q 003437 283 PVALPA 288 (820)
Q Consensus 283 ~~~~~~ 288 (820)
++++..
T Consensus 488 ~~~~~~ 493 (538)
T 1yqt_A 488 PMGMRE 493 (538)
T ss_dssp CEEHHH
T ss_pred HHHHHh
Confidence 988764
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=340.01 Aligned_cols=207 Identities=28% Similarity=0.377 Sum_probs=174.6
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..++++|+++.|++ ..|+++|+++++||+++|+||||||||||+|+|+|+++ +++|+|.+++
T Consensus 268 ~~l~~~~l~~~~~~-------------~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~--- 329 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD-------------FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK--- 329 (538)
T ss_dssp EEEEECCEEEEETT-------------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSC---
T ss_pred ceEEEcceEEEECC-------------EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC---
Confidence 46899999998853 25888899999999999999999999999999999985 4689998754
Q ss_pred CCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 126 TTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
+.++|++|+......+||.||+.+..... .. .....++++++.+||.+..++.++ .|||||||
T Consensus 330 ------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~Q 392 (538)
T 3ozx_A 330 ------QILSYKPQRIFPNYDGTVQQYLENASKDA----LS--TSSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQ 392 (538)
T ss_dssp ------CCEEEECSSCCCCCSSBHHHHHHHHCSST----TC--TTSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHH
T ss_pred ------eeeEeechhcccccCCCHHHHHHHhhhhc----cc--hhHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHH
Confidence 34789999877666789999998742111 11 112457889999999988887776 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeC--CeEEEEcC
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLAR--GRLVYMGS 282 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~--G~iv~~G~ 282 (820)
||+|||+|+.+|++|||||||+|||+.++.+++++|+++++ .|.|||++|||++. +..+||||++|++ |.+...++
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~-~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSI-HDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEeCCcceeccCCC
Confidence 99999999999999999999999999999999999999975 59999999999984 7889999999986 66777777
Q ss_pred ccchhh
Q 003437 283 PVALPA 288 (820)
Q Consensus 283 ~~~~~~ 288 (820)
+.++..
T Consensus 472 ~~~~~~ 477 (538)
T 3ozx_A 472 PVTLKT 477 (538)
T ss_dssp CEEHHH
T ss_pred hHHHHH
Confidence 766543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=329.89 Aligned_cols=192 Identities=22% Similarity=0.268 Sum_probs=162.2
Q ss_pred cceeeeeEEEeCC-----cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCC
Q 003437 73 YLLHDISGQAIRG-----EIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPML 147 (820)
Q Consensus 73 ~iL~~vs~~i~~G-----e~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~l 147 (820)
.+++++|+++.+| |+++|+||||||||||+|+|+|+++| ++|+. +. +..++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC--CCCcC------cc----CCcEEEecccccccCCc
Confidence 4789999999988 78999999999999999999999864 56752 21 34589999997665567
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 003437 148 TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTS 227 (820)
Q Consensus 148 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPts 227 (820)
||+|++.... +. ... ..+.++++++.++|.+..++.++ .|||||||||+|||+|+.+|++|||||||+
T Consensus 429 tv~e~~~~~~--~~--~~~---~~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKKI--RG--QFL---NPQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHHC--SS--TTT---SHHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHHh--hc--ccc---cHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 9999875422 11 111 12457789999999988887765 699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeC--CeEEEEcCccchhhh
Q 003437 228 GLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLAR--GRLVYMGSPVALPAH 289 (820)
Q Consensus 228 gLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~--G~iv~~G~~~~~~~~ 289 (820)
|||+.++..++++|+++++ .|.|||++|||++. +..+||||++|++ |+++..|+|+++...
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~-~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIM-ATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH-HHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999964 69999999999974 7889999999996 899999999998754
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=338.10 Aligned_cols=200 Identities=24% Similarity=0.353 Sum_probs=167.8
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
+..|...|++++|++ +.+|+|+||++++||+++|+||||||||||||+|+| |+| +|.+
T Consensus 433 ~~~L~~~~ls~~yg~------------~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~ 490 (986)
T 2iw3_A 433 GEDLCNCEFSLAYGA------------KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFP 490 (986)
T ss_dssp SCEEEEEEEEEEETT------------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCC
T ss_pred cceeEEeeEEEEECC------------EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCc
Confidence 445888899999953 349999999999999999999999999999999996 332 4443
Q ss_pred CCCccccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCChH
Q 003437 125 VTTSYMKMVSSYVMQDD-QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIGNEGRRGVSGG 202 (820)
Q Consensus 125 ~~~~~~~~~~gyv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSGG 202 (820)
... ...++|++|+. .+++.+||.|++.+ .. ... .++++++++.+||. +..++.++ .||||
T Consensus 491 ~~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~---~~~-----~~~v~~~L~~lgL~~~~~~~~~~-----~LSGG 552 (986)
T 2iw3_A 491 TQE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SG---VGT-----KEAIKDKLIEFGFTDEMIAMPIS-----ALSGG 552 (986)
T ss_dssp CTT---TSCEEETTCCCCCCCTTSBHHHHHHT--TC---SSC-----HHHHHHHHHHTTCCHHHHHSBGG-----GCCHH
T ss_pred ccc---ceeEEEEcccccccccCCcHHHHHHH--hh---cCH-----HHHHHHHHHHcCCChhhhcCCcc-----cCCHH
Confidence 321 12368999985 67888999999975 11 111 46788999999995 56777776 59999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE-EEc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV-YMG 281 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv-~~G 281 (820)
|||||+||++|+.+|++|||||||+|||+.++..+.++|++ .|.|||++|||... +..+||++++|++|+++ +.|
T Consensus 553 qkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~-l~~~adrii~L~~G~iv~~~G 628 (986)
T 2iw3_A 553 WKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSVF-LDNVCEYIINYEGLKLRKYKG 628 (986)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHHH-HHHHCSEEEEEETTEEEEEES
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHHH-HHHhCCEEEEEECCeeecCCC
Confidence 99999999999999999999999999999999999999988 58999999999874 78899999999999997 689
Q ss_pred Cccchhh
Q 003437 282 SPVALPA 288 (820)
Q Consensus 282 ~~~~~~~ 288 (820)
+++++..
T Consensus 629 ~~~e~~~ 635 (986)
T 2iw3_A 629 NFTEFVK 635 (986)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 8877654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-34 Score=339.21 Aligned_cols=208 Identities=23% Similarity=0.354 Sum_probs=141.1
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHH---------------------HHHHcCCCCCC-----CceEEEECCEeC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFL---------------------DALAGRIAQGS-----LEGSVRIDGKPV 125 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl---------------------~~L~G~~~~~~-----~~G~I~i~G~~~ 125 (820)
+.+|+||||+|++||+++|+||||||||||+ +++.|+..+.. ..|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4599999999999999999999999999998 77777765431 156777877665
Q ss_pred CCccccceEEEEccCCC-------------------CCCCCCHHHHHHHHHHhcCCCCCCHHHHH------HHHHHHHHH
Q 003437 126 TTSYMKMVSSYVMQDDQ-------------------LFPMLTVFETFMFAAEVRLPPSISRDEKK------KRVYELLDQ 180 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~-------------------l~~~lTV~e~l~~~~~~~~~~~~~~~~~~------~~v~~~l~~ 180 (820)
... .++.++||+|... .++.+||+||+.+........ ....... ....++++.
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTE-KEAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccch-hhhHHHHHHHHHHHHHHHHHHH
Confidence 422 2233455555432 346789999998754322110 0000000 112246889
Q ss_pred cCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC
Q 003437 181 LGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDIIHKPS--LLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQ 257 (820)
Q Consensus 181 lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~--lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 257 (820)
+||.+. .++.++ +|||||||||+|||||+.+|+ +|||||||+|||+.++..++++|++++++|.|||++|||
T Consensus 189 ~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999865 577665 699999999999999999998 999999999999999999999999998889999999999
Q ss_pred ccHHHHhhcCEEEEE------eCCeEEEEcCccchhh
Q 003437 258 PSYRIQMLLDRIIVL------ARGRLVYMGSPVALPA 288 (820)
Q Consensus 258 ~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 288 (820)
++. + ..||++++| ++|++++.|+++++..
T Consensus 264 ~~~-~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 264 EDT-M-LAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp HHH-H-HHCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred HHH-H-hhCCEEEEecccccccCCEEEEecCHHHHhc
Confidence 873 4 469999999 8999999999988753
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=337.74 Aligned_cols=193 Identities=24% Similarity=0.336 Sum_probs=157.5
Q ss_pred EEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEE---------EEC
Q 003437 51 KNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSV---------RID 121 (820)
Q Consensus 51 ~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I---------~i~ 121 (820)
+||+++|++. ..+|+|+| ++++||+++|+||||||||||||+|+|++.| ++|++ .++
T Consensus 95 ~~ls~~yg~~-----------~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p--~~G~~~~~~~~~~~~~~ 160 (607)
T 3bk7_A 95 EDCVHRYGVN-----------AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIP--NLCEDNDSWDNVIRAFR 160 (607)
T ss_dssp GSEEEECSTT-----------CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCC--CTTTTCCCHHHHHHHTT
T ss_pred CCeEEEECCC-----------CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCC--CCCccccccchhhheeC
Confidence 7778777421 13899999 9999999999999999999999999999854 56885 456
Q ss_pred CEeCCCc-----cccceEEEEccCCCCCC---CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 003437 122 GKPVTTS-----YMKMVSSYVMQDDQLFP---MLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGN 193 (820)
Q Consensus 122 G~~~~~~-----~~~~~~gyv~Q~~~l~~---~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~ 193 (820)
|.++... ..+..+++++|.....+ ..||.|++... . ..++++++++.+||++..++.++
T Consensus 161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-------~-----~~~~~~~~L~~lgL~~~~~~~~~- 227 (607)
T 3bk7_A 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-------D-----EVGKFEEVVKELELENVLDRELH- 227 (607)
T ss_dssp TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT-------C-----CSSCHHHHHHHTTCTTGGGSBGG-
T ss_pred CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh-------H-----HHHHHHHHHHHcCCCchhCCChh-
Confidence 6654321 11234688888743322 13999998531 0 12357889999999988888876
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 194 ~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
+|||||||||+||+||+.+|++|||||||++||+.++..++++|++++++|.|||+++||+.. +..+||+|++|+
T Consensus 228 ----~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~-~~~~adri~vl~ 302 (607)
T 3bk7_A 228 ----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAV-LDYLSDVIHVVY 302 (607)
T ss_dssp ----GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHCSEEEEEE
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHH-HHhhCCEEEEEC
Confidence 699999999999999999999999999999999999999999999998889999999999874 778999999998
Q ss_pred CC
Q 003437 274 RG 275 (820)
Q Consensus 274 ~G 275 (820)
++
T Consensus 303 ~~ 304 (607)
T 3bk7_A 303 GE 304 (607)
T ss_dssp SC
T ss_pred CC
Confidence 65
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=332.43 Aligned_cols=196 Identities=24% Similarity=0.344 Sum_probs=158.0
Q ss_pred EEE-EEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEE--------
Q 003437 48 LEF-KNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSV-------- 118 (820)
Q Consensus 48 L~~-~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I-------- 118 (820)
.++ +||+++|++. ..+|+|+| +|++||+++|+||||||||||||+|+|++.| ++|++
T Consensus 21 ~~~~~~ls~~yg~~-----------~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p--~~G~~~~~~~~~~ 86 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN-----------AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIP--NLCGDNDSWDGVI 86 (538)
T ss_dssp ---CCCEEEECSTT-----------CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC--CTTTTCCSHHHHH
T ss_pred hhHhcCcEEEECCc-----------cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCccCcchhhhH
Confidence 455 5899998531 13899999 9999999999999999999999999999854 56885
Q ss_pred -EECCEeCCCc-----cccceEEEEccCCCCCCC---CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 003437 119 -RIDGKPVTTS-----YMKMVSSYVMQDDQLFPM---LTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHT 189 (820)
Q Consensus 119 -~i~G~~~~~~-----~~~~~~gyv~Q~~~l~~~---lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 189 (820)
.++|.++... ..+..+++++|+..+++. .||.|++... +..++++++++.+||++..++
T Consensus 87 ~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~------------~~~~~~~~~l~~lgl~~~~~~ 154 (538)
T 1yqt_A 87 RAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA------------DETGKLEEVVKALELENVLER 154 (538)
T ss_dssp HHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH------------CSSSCHHHHHHHTTCTTTTTS
T ss_pred HhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh------------hHHHHHHHHHHHcCCChhhhC
Confidence 4566554210 112346899987543332 3899887531 012457889999999988888
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEE
Q 003437 190 YIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRI 269 (820)
Q Consensus 190 ~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 269 (820)
.++ +|||||||||+||+||+.+|++|||||||++||+.++..++++|++++++|.|||++||+.. .+..+||+|
T Consensus 155 ~~~-----~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri 228 (538)
T 1yqt_A 155 EIQ-----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDII 228 (538)
T ss_dssp BGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEE
T ss_pred Chh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 775 69999999999999999999999999999999999999999999999888999999999987 478899999
Q ss_pred EEEeCC
Q 003437 270 IVLARG 275 (820)
Q Consensus 270 ~lL~~G 275 (820)
++|++|
T Consensus 229 ~vl~~~ 234 (538)
T 1yqt_A 229 HVVYGE 234 (538)
T ss_dssp EEEEEE
T ss_pred EEEcCc
Confidence 999864
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=339.20 Aligned_cols=208 Identities=24% Similarity=0.378 Sum_probs=161.4
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..|+++||+++|++. .+.+|+|+||++++||+++|+||||||||||+|+|+|++. +++|+|.++|.
T Consensus 670 ~mL~v~nLs~~Y~g~----------~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~--P~sG~I~~~~~-- 735 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGT----------SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--PTSGEVYTHEN-- 735 (986)
T ss_dssp EEEEEEEEEECCTTC----------SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC--CSEEEEEECTT--
T ss_pred ceEEEEeeEEEeCCC----------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEcCc--
Confidence 469999999998531 1358999999999999999999999999999999999985 46899999862
Q ss_pred CCccccceEEEEccCCCC----CCCCCHHHHHHHHHHhc------------CC---------------------------
Q 003437 126 TTSYMKMVSSYVMQDDQL----FPMLTVFETFMFAAEVR------------LP--------------------------- 162 (820)
Q Consensus 126 ~~~~~~~~~gyv~Q~~~l----~~~lTV~e~l~~~~~~~------------~~--------------------------- 162 (820)
..++|++|+... ....|+.|++.+..... ..
T Consensus 736 ------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~ 809 (986)
T 2iw3_A 736 ------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRR 809 (986)
T ss_dssp ------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEE
T ss_pred ------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhh
Confidence 136888886421 12357777765421100 00
Q ss_pred -------------------------CCC----------------------------------CHHHHHHHHHHHHHHcCC
Q 003437 163 -------------------------PSI----------------------------------SRDEKKKRVYELLDQLGL 183 (820)
Q Consensus 163 -------------------------~~~----------------------------------~~~~~~~~v~~~l~~lgL 183 (820)
..+ .+....++++++++.+||
T Consensus 810 ~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL 889 (986)
T 2iw3_A 810 KFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGL 889 (986)
T ss_dssp EETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred hhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCC
Confidence 000 000113568899999999
Q ss_pred Ccc--ccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHH
Q 003437 184 RSA--THTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYR 261 (820)
Q Consensus 184 ~~~--~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 261 (820)
.+. .++.++ +|||||||||+|||+|+.+|++|||||||+|||+.+...+++.|+++ |.|||++|||++.
T Consensus 890 ~~~~~~~~~~~-----~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e~- 960 (986)
T 2iw3_A 890 DPEIVSHSRIR-----GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAEF- 960 (986)
T ss_dssp CHHHHHHSCGG-----GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHHH-
T ss_pred CchhhcCCCcc-----ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHHH-
Confidence 753 466665 69999999999999999999999999999999999999999988765 6799999999874
Q ss_pred HHhhcCEEEEEeCCeEEEEcC
Q 003437 262 IQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 262 i~~~~D~v~lL~~G~iv~~G~ 282 (820)
+..+||++++|++|+++..|+
T Consensus 961 v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 961 TKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp HTTTCCEEECCBTTBCCC---
T ss_pred HHHhCCEEEEEECCEEEEeCC
Confidence 778999999999999987764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-32 Score=326.84 Aligned_cols=196 Identities=28% Similarity=0.419 Sum_probs=150.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH----------------------cCCCCCCCceEEEECCEeCCCccc
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA----------------------GRIAQGSLEGSVRIDGKPVTTSYM 130 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~----------------------G~~~~~~~~G~I~i~G~~~~~~~~ 130 (820)
.+|+|||++|++||+++|+||||||||||+++|. |+. ...|.|.++|.++.....
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~---~~~~~i~~~~~~~~~~~~ 412 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE---HLDKVIDIDQSPIGRTPR 412 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG---GCSEEEECCSSCSCSSTT
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc---ccCceeEeccccCCCCCC
Confidence 4899999999999999999999999999998764 221 134788888877642100
Q ss_pred --------------------------------------------cceEEEEccCCCCCC---------------------
Q 003437 131 --------------------------------------------KMVSSYVMQDDQLFP--------------------- 145 (820)
Q Consensus 131 --------------------------------------------~~~~gyv~Q~~~l~~--------------------- 145 (820)
....|+++|+..++|
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (670)
T 3ux8_A 413 SNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEV 492 (670)
T ss_dssp CCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTC
T ss_pred cchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhe
Confidence 001234444333322
Q ss_pred -----------CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHHHHHHHHHHH
Q 003437 146 -----------MLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRGVSGGERRRVSIGIDI 213 (820)
Q Consensus 146 -----------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSGGerqRv~ia~aL 213 (820)
.+||.||+.+.... . ..+++.+.++.+||.. ..++.++ +|||||||||+|||||
T Consensus 493 ~~~~~~~~~~~~ltv~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~iAraL 558 (670)
T 3ux8_A 493 TYKGKNIAEVLDMTVEDALDFFASI-------P--KIKRKLETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAEL 558 (670)
T ss_dssp CBTTBCHHHHHTSBHHHHHHHTTTC-------H--HHHHHHHHHHHTTCTTSBTTCCGG-----GCCHHHHHHHHHHHHH
T ss_pred eecCCCHHHHhhCCHHHHHHHHHHh-------h--hHHHHHHHHHHcCCchhhccCCch-----hCCHHHHHHHHHHHHH
Confidence 47999999875321 1 2345677888999964 3455554 6999999999999999
Q ss_pred hcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE------eCCeEEEEcCcc
Q 003437 214 IHKP---SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL------ARGRLVYMGSPV 284 (820)
Q Consensus 214 ~~~P---~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~ 284 (820)
+.+| ++|||||||+|||+.++..++++|++++++|.|||++|||++. + ..||+|++| ++|++++.|+++
T Consensus 559 ~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~-~-~~~d~i~~l~~~~g~~~G~i~~~g~~~ 636 (670)
T 3ux8_A 559 HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV-I-KTADYIIDLGPEGGDRGGQIVAVGTPE 636 (670)
T ss_dssp HSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-H-TTCSEEEEEESSSGGGCCEEEEEECHH
T ss_pred hhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-H-HhCCEEEEecCCcCCCCCEEEEecCHH
Confidence 9987 5999999999999999999999999998889999999999974 4 579999999 899999999998
Q ss_pred chh
Q 003437 285 ALP 287 (820)
Q Consensus 285 ~~~ 287 (820)
++.
T Consensus 637 ~~~ 639 (670)
T 3ux8_A 637 EVA 639 (670)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-31 Score=309.31 Aligned_cols=188 Identities=23% Similarity=0.335 Sum_probs=143.9
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEE-----------EECCEeCCCc---cccce--EEE
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSV-----------RIDGKPVTTS---YMKMV--SSY 136 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I-----------~i~G~~~~~~---~~~~~--~gy 136 (820)
..|++++ .+++||+++|+||||||||||||+|+|++.| ++|+| .+.|.++... ...+. ..+
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P--~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 168 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKP--NLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAII 168 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC--CTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCC--CCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhh
Confidence 3677777 6899999999999999999999999999864 57987 3334332110 00111 123
Q ss_pred EccCCCC------CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHH
Q 003437 137 VMQDDQL------FPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIG 210 (820)
Q Consensus 137 v~Q~~~l------~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia 210 (820)
.+|.... -+..++.+++.... . +..++++++++.+||.+..++.++ +|||||||||+||
T Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~~~------~----~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGe~Qrv~iA 233 (608)
T 3j16_B 169 KPQYVDNIPRAIKGPVQKVGELLKLRM------E----KSPEDVKRYIKILQLENVLKRDIE-----KLSGGELQRFAIG 233 (608)
T ss_dssp ECCCTTTHHHHCSSSSSHHHHHHHHHC------C----SCHHHHHHHHHHHTCTGGGGSCTT-----TCCHHHHHHHHHH
T ss_pred chhhhhhhhhhhcchhhHHHHHHhhhh------h----hHHHHHHHHHHHcCCcchhCCChH-----HCCHHHHHHHHHH
Confidence 3443211 12235666554221 0 123568899999999998888775 6999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 211 IDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 211 ~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
+||+.+|++|||||||++||+.++..+.++|++++++|.|||+++|+++. +..+||+|++|++|..++
T Consensus 234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~-~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSV-LDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHH-HHHHCSEEEEEESCTTTE
T ss_pred HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEEeCCcccc
Confidence 99999999999999999999999999999999998889999999999974 888999999998875443
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=308.34 Aligned_cols=174 Identities=20% Similarity=0.314 Sum_probs=138.6
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEE-----------EECCEeCCCc-----cccceEEEEccC----C
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSV-----------RIDGKPVTTS-----YMKMVSSYVMQD----D 141 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I-----------~i~G~~~~~~-----~~~~~~gyv~Q~----~ 141 (820)
.++||++||+||||||||||||+|+|++.| ++|+| .++|.++... .....+..+.|. +
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p--~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIP--NFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCC--CTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 358999999999999999999999999854 57988 6777665311 001123333333 3
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEE
Q 003437 142 QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLF 221 (820)
Q Consensus 142 ~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLl 221 (820)
.++. .||.|++... +..++++++++.+|+.+..++.++ .|||||||||+||+||+.+|++||
T Consensus 100 ~~~~-~~v~~~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL~~~p~ill 161 (538)
T 3ozx_A 100 KFLK-GTVNEILTKI------------DERGKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVYI 161 (538)
T ss_dssp TTCC-SBHHHHHHHH------------CCSSCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred hhcc-CcHHHHhhcc------------hhHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3333 3888765421 112357789999999998888876 699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 222 LDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 222 lDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||||++||+.++..+.++|+++++ |+|||+++|+++ .+..+||+|++|++|..
T Consensus 162 lDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 162 FDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYGESS 215 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEEETT
T ss_pred EECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecCCcc
Confidence 9999999999999999999999976 999999999997 48889999999987543
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-30 Score=306.86 Aligned_cols=211 Identities=26% Similarity=0.402 Sum_probs=160.0
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHH-HHcCCC-------C-----
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDA-LAGRIA-------Q----- 111 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~-L~G~~~-------~----- 111 (820)
...|+++|+++. .|+|||++|++||+++|+|+||||||||+++ |+|++. +
T Consensus 500 ~~~L~v~~l~~~-----------------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~ 562 (842)
T 2vf7_A 500 AGWLELNGVTRN-----------------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPED 562 (842)
T ss_dssp SCEEEEEEEEET-----------------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC--------
T ss_pred CceEEEEeeeec-----------------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccc
Confidence 345999999741 6999999999999999999999999999996 776531 1
Q ss_pred -----------CCCce-------EEEECCEeCCCccc-------------c---------ceEEEEcc------------
Q 003437 112 -----------GSLEG-------SVRIDGKPVTTSYM-------------K---------MVSSYVMQ------------ 139 (820)
Q Consensus 112 -----------~~~~G-------~I~i~G~~~~~~~~-------------~---------~~~gyv~Q------------ 139 (820)
.+.+| .|.++|.++..... + +..||.++
T Consensus 563 ~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~ 642 (842)
T 2vf7_A 563 DEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCE 642 (842)
T ss_dssp ---------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCT
T ss_pred cccccccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccc
Confidence 11367 78999987742110 0 01122211
Q ss_pred ----------CCCCCC------------------------C--------CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 003437 140 ----------DDQLFP------------------------M--------LTVFETFMFAAEVRLPPSISRDEKKKRVYEL 177 (820)
Q Consensus 140 ----------~~~l~~------------------------~--------lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~ 177 (820)
+..+++ . +||.|++.|... .. ..+++.++
T Consensus 643 ~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~-------~~--~~~~~~~~ 713 (842)
T 2vf7_A 643 HCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD-------ES--AIFRALDT 713 (842)
T ss_dssp TTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT-------SH--HHHHHHHH
T ss_pred cccCCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc-------ch--HHHHHHHH
Confidence 111222 2 345555444211 11 23478899
Q ss_pred HHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE
Q 003437 178 LDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDIIHK---PSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLM 253 (820)
Q Consensus 178 l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~~~---P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~ 253 (820)
|+.+||... .++.+. .|||||||||+||++|+.+ |+||||||||+|||+.+...++++|++++++|.|||+
T Consensus 714 L~~~gL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIv 788 (842)
T 2vf7_A 714 LREVGLGYLRLGQPAT-----ELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIA 788 (842)
T ss_dssp HHHTTCTTSBTTCCGG-----GCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHcCCCcccccCCcc-----cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999863 455554 6999999999999999996 7999999999999999999999999999988999999
Q ss_pred EEcCccHHHHhhcCEEEEE------eCCeEEEEcCccchhh
Q 003437 254 TIHQPSYRIQMLLDRIIVL------ARGRLVYMGSPVALPA 288 (820)
Q Consensus 254 ~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 288 (820)
++|+++. + ..||+|++| ++|++++.|+++++..
T Consensus 789 isHdl~~-i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~ 827 (842)
T 2vf7_A 789 VEHKMQV-V-AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQ 827 (842)
T ss_dssp ECCCHHH-H-TTCSEEEEECSSSGGGCCSEEEEECHHHHTT
T ss_pred EcCCHHH-H-HhCCEEEEECCCCCCCCCEEEEEcCHHHHHh
Confidence 9999874 5 789999999 7899999999988753
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=308.07 Aligned_cols=200 Identities=27% Similarity=0.403 Sum_probs=153.9
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHH---------HHHHcCCCCC----CCc------eEEEECCEeCCCcc----
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFL---------DALAGRIAQG----SLE------GSVRIDGKPVTTSY---- 129 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl---------~~L~G~~~~~----~~~------G~I~i~G~~~~~~~---- 129 (820)
..|+|||++|++|++++|+||||||||||+ +.+.+...+. ..+ +.|.+++.++....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 379999999999999999999999999997 4444432111 112 34566655542100
Q ss_pred ----------------------------------------ccceEEEEccCCCCCC------------------------
Q 003437 130 ----------------------------------------MKMVSSYVMQDDQLFP------------------------ 145 (820)
Q Consensus 130 ----------------------------------------~~~~~gyv~Q~~~l~~------------------------ 145 (820)
..+..||+.|+..++|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0012367777766655
Q ss_pred --------CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHhcC
Q 003437 146 --------MLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDIIHK 216 (820)
Q Consensus 146 --------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~~~ 216 (820)
.+||.|++.|.... ....++.++|+.+||... .+.. +.+|||||||||+||++|+.+
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~lgq~-----~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVKLGQP-----ATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSBTTCC-----STTCCHHHHHHHHHHHHHTSC
T ss_pred cCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhhccCC-----ccCCCHHHHHHHHHHHHHhhC
Confidence 36888888875321 123567889999999753 2333 357999999999999999987
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE------eCCeEEEEcCccchh
Q 003437 217 P---SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL------ARGRLVYMGSPVALP 287 (820)
Q Consensus 217 P---~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 287 (820)
| +||||||||+|||+.+...+++.|++++++|.|||+++|+++. + ..||+|++| ++|+|++.|+++++.
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~-i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDV-I-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-H-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 5 7999999999999999999999999999889999999999963 5 459999999 899999999999886
Q ss_pred h
Q 003437 288 A 288 (820)
Q Consensus 288 ~ 288 (820)
.
T Consensus 902 ~ 902 (916)
T 3pih_A 902 K 902 (916)
T ss_dssp S
T ss_pred h
Confidence 4
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-30 Score=308.82 Aligned_cols=210 Identities=29% Similarity=0.410 Sum_probs=161.9
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH-cCC---------CCCC--
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA-GRI---------AQGS-- 113 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~-G~~---------~~~~-- 113 (820)
..|+++|++. ..|+|||++|++||+++|+|+||||||||+++|. |.+ .++.
T Consensus 628 ~~L~v~~l~~-----------------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~ 690 (972)
T 2r6f_A 628 RWLEVVGARE-----------------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHR 690 (972)
T ss_dssp CEEEEEEECS-----------------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCS
T ss_pred eEEEEecCcc-----------------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcee
Confidence 4588888752 2699999999999999999999999999999854 211 1111
Q ss_pred -Cce------EEEECCEeCCCccc----------------------cceEEEEccCCCCC--------------------
Q 003437 114 -LEG------SVRIDGKPVTTSYM----------------------KMVSSYVMQDDQLF-------------------- 144 (820)
Q Consensus 114 -~~G------~I~i~G~~~~~~~~----------------------~~~~gyv~Q~~~l~-------------------- 144 (820)
..| .|.++|.++..... .+..||++|...+.
T Consensus 691 ~i~G~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~ 770 (972)
T 2r6f_A 691 DIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMH 770 (972)
T ss_dssp EEECGGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCS
T ss_pred eeccccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehh
Confidence 123 58899888742100 12346777743221
Q ss_pred --C--------------------------------CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccc
Q 003437 145 --P--------------------------------MLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHT 189 (820)
Q Consensus 145 --~--------------------------------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~ 189 (820)
+ .+||.|++.|... . . ..+++.++|+.+||.. ..++
T Consensus 771 fl~~v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~~gL~~~~l~~ 841 (972)
T 2r6f_A 771 FLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQ 841 (972)
T ss_dssp SSCCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS------C-H--HHHHHHHHHHHTTCSSSBTTC
T ss_pred ccccccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc------c-h--hHHHHHHHHHHcCCCcccccC
Confidence 1 3578888776421 1 1 1234678999999987 5666
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhc
Q 003437 190 YIGNEGRRGVSGGERRRVSIGIDIIHKP---SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL 266 (820)
Q Consensus 190 ~ig~~~~~~LSGGerqRv~ia~aL~~~P---~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 266 (820)
.+. .|||||||||+||++|+.+| ++|||||||+|||+.++..++++|++++++|.|||+++|+++. + ..|
T Consensus 842 ~~~-----~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~-i-~~a 914 (972)
T 2r6f_A 842 PAT-----TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV-I-KTA 914 (972)
T ss_dssp CGG-----GCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-H-TTC
T ss_pred chh-----hCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-H-HhC
Confidence 654 69999999999999999865 9999999999999999999999999999889999999999874 4 579
Q ss_pred CEEEEE------eCCeEEEEcCccchhh
Q 003437 267 DRIIVL------ARGRLVYMGSPVALPA 288 (820)
Q Consensus 267 D~v~lL------~~G~iv~~G~~~~~~~ 288 (820)
|+|++| ++|++++.|+++++..
T Consensus 915 DrIivL~p~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 915 DYIIDLGPEGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp SEEEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred CEEEEEcCCCCCCCCEEEEecCHHHHHh
Confidence 999999 6899999999988753
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=268.78 Aligned_cols=204 Identities=21% Similarity=0.246 Sum_probs=148.2
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC------------------------------------CCCce
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQ------------------------------------GSLEG 116 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~------------------------------------~~~~G 116 (820)
.+|+++++++.+| +++|+|||||||||||++|+++... .+.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3799999999999 9999999999999999999887642 12368
Q ss_pred EEEECCEeCCCcc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhc-----------------------CCCCCC---
Q 003437 117 SVRIDGKPVTTSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVR-----------------------LPPSIS--- 166 (820)
Q Consensus 117 ~I~i~G~~~~~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~-----------------------~~~~~~--- 166 (820)
++++||++++... .+..+++++|++.++.. +..+...|.-... ......
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 9999999986421 23347999999876543 5554444321100 000000
Q ss_pred -------------------------------HHHHHHHHHHHHHHcCCCccc----------------cc---cccC---
Q 003437 167 -------------------------------RDEKKKRVYELLDQLGLRSAT----------------HT---YIGN--- 193 (820)
Q Consensus 167 -------------------------------~~~~~~~v~~~l~~lgL~~~~----------------~~---~ig~--- 193 (820)
.....+.+.+.++.+++.+.. +. .+..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 001123455667777765410 00 1110
Q ss_pred ---CCCCC-CChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcC
Q 003437 194 ---EGRRG-VSGGERRRVSIGIDIIHKP--SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLD 267 (820)
Q Consensus 194 ---~~~~~-LSGGerqRv~ia~aL~~~P--~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 267 (820)
...+. |||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||++||++. +...||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcC
Confidence 01112 6999999999999999999 9999999999999999999999999998 5899999999985 457899
Q ss_pred EEEEE----eCCeEEEEc
Q 003437 268 RIIVL----ARGRLVYMG 281 (820)
Q Consensus 268 ~v~lL----~~G~iv~~G 281 (820)
++++| ++|+++...
T Consensus 364 ~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 364 HHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEeccCCceEEEE
Confidence 99999 999987653
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-30 Score=293.68 Aligned_cols=186 Identities=11% Similarity=0.105 Sum_probs=148.3
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCce-E-EEECCEeCCCccccceEEEEccCCC---CCCCCCH
Q 003437 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEG-S-VRIDGKPVTTSYMKMVSSYVMQDDQ---LFPMLTV 149 (820)
Q Consensus 75 L~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G-~-I~i~G~~~~~~~~~~~~gyv~Q~~~---l~~~lTV 149 (820)
+.++|+++++|++++|+||||||||||+|+|+|+.. +.+| + |++||. .++.++|++|+.. +.+.+||
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 347889999999999999999999999999999885 4689 9 999982 2566899999984 4556799
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHH--HhcCCCE----EEEe
Q 003437 150 FETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGID--IIHKPSL----LFLD 223 (820)
Q Consensus 150 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~a--L~~~P~l----LllD 223 (820)
+||+ |+...... .. ..+++.++++.+||++..+ . .+|||||||||+||++ |+.+|++ ||||
T Consensus 200 ~eni-~~~~~~~~--~~---~~~~~~~ll~~~gl~~~~~--~-----~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLD 266 (460)
T 2npi_A 200 QLPT-WGQSLTSG--AT---LLHNKQPMVKNFGLERINE--N-----KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVD 266 (460)
T ss_dssp TCTT-CSCBCBSS--CC---SSCCBCCEECCCCSSSGGG--C-----HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEE
T ss_pred hhhh-cccccccC--cc---hHHHHHHHHHHhCCCcccc--h-----hhhhHHHHHHHHHHHHHHhccCcccCcceEEEe
Confidence 9998 65432111 00 1234567788899987665 2 3699999999999999 9999999 9999
Q ss_pred C-CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCcc--H---HHHhhcCE-----EEEEe-CCeEEEEcCccch
Q 003437 224 E-PTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS--Y---RIQMLLDR-----IIVLA-RGRLVYMGSPVAL 286 (820)
Q Consensus 224 E-PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~--~---~i~~~~D~-----v~lL~-~G~iv~~G~~~~~ 286 (820)
| ||++||+. ...+.+++++ .+.|+|+++|+.+ . .+..+||+ |++|+ +|+++ .|+++++
T Consensus 267 EpPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 267 TPSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred CCcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 9 99999999 4444444443 3789999999987 2 36688999 99999 99999 8988665
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-24 Score=239.60 Aligned_cols=83 Identities=27% Similarity=0.497 Sum_probs=76.5
Q ss_pred CCCCCChHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCE
Q 003437 195 GRRGVSGGERRRVSIGIDII------HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~------~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 268 (820)
.+.+|||||||||+||++|+ .+|++|||||||+|||+.++..+++.|++++++|.|||++||+++. ...||+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~--~~~~d~ 353 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF--SEAFDR 353 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH--HTTCSC
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH--HHhCCE
Confidence 34579999999999999999 7999999999999999999999999999998889999999999863 567999
Q ss_pred EEEEeCCeEEE
Q 003437 269 IIVLARGRLVY 279 (820)
Q Consensus 269 v~lL~~G~iv~ 279 (820)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999874
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.8e-28 Score=246.42 Aligned_cols=142 Identities=15% Similarity=0.134 Sum_probs=101.5
Q ss_pred cccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC--CccccceEEEEccCCCCCCCCC
Q 003437 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT--TSYMKMVSSYVMQDDQLFPMLT 148 (820)
Q Consensus 71 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~--~~~~~~~~gyv~Q~~~l~~~lT 148 (820)
++.+|+|+ ++||+++|+||||||||||+|+|+|+ +| ++|+|.. .++. ....++.+|||+|++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p--~~G~I~~--~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL--QSKQVSR--IILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH--HTTSCSE--EEEEECSCCTTCCCCSSCC---------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC--cCCeeee--EEecCCchhhhcceEEecCCH-------
Confidence 34689996 89999999999999999999999998 54 5788842 2221 122456789999976
Q ss_pred HHHHH-HHHH----HhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEe
Q 003437 149 VFETF-MFAA----EVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLD 223 (820)
Q Consensus 149 V~e~l-~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllD 223 (820)
+||+ .+.. .+.. ... .++++++++. |+ ||||||+|||+|+.+|++||||
T Consensus 76 -~enl~~~~~~~~~~~~~--~~~----~~~~~~~l~~-gl------------------Gq~qrv~lAraL~~~p~lllLD 129 (208)
T 3b85_A 76 -NEKIDPYLRPLHDALRD--MVE----PEVIPKLMEA-GI------------------VEVAPLAYMRGRTLNDAFVILD 129 (208)
T ss_dssp -----CTTTHHHHHHHTT--TSC----TTHHHHHHHT-TS------------------EEEEEGGGGTTCCBCSEEEEEC
T ss_pred -HHHHHHHHHHHHHHHHH--hcc----HHHHHHHHHh-CC------------------chHHHHHHHHHHhcCCCEEEEe
Confidence 4444 2211 1110 001 1345555554 32 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 224 EPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 224 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
|||+| ++..++++|+++ ++|+||| +|||++.
T Consensus 130 EPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~ 160 (208)
T 3b85_A 130 EAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQ 160 (208)
T ss_dssp SGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC---
T ss_pred CCccc----cHHHHHHHHHHh-cCCCEEE-EECCHHH
Confidence 99999 889999999998 6789999 9999863
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=230.26 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=72.7
Q ss_pred CCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEE--
Q 003437 196 RRGVSGGERRRVSIGIDII----HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRI-- 269 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~----~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v-- 269 (820)
+..||||||||++||++|+ .+|++|||||||++||+.....+.+.|++++ +|.+||++||++. +...||++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEE
Confidence 3479999999999999997 6889999999999999999999999999985 5899999999974 56789987
Q ss_pred EEEeCCe-EEEEcCccc
Q 003437 270 IVLARGR-LVYMGSPVA 285 (820)
Q Consensus 270 ~lL~~G~-iv~~G~~~~ 285 (820)
++|.+|+ .+.....++
T Consensus 294 v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEESSSCEEEEECCC--
T ss_pred EEEeCCEEEEEEEEcch
Confidence 7888874 444444443
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-24 Score=214.70 Aligned_cols=144 Identities=15% Similarity=0.179 Sum_probs=102.7
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCC-CCCCHHHHHHH
Q 003437 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLF-PMLTVFETFMF 155 (820)
Q Consensus 77 ~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~-~~lTV~e~l~~ 155 (820)
||||++++||+++|+||||||||||+|++.+ |...+++. ...|+++|++.-. ..-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~--------~~~~~~~d--------~~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK--------PTEVISSD--------FCRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC--------GGGEEEHH--------HHHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc--------CCeEEccH--------HHHHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999653 21112110 1126777764210 0001112111
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH---
Q 003437 156 AAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST--- 232 (820)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~--- 232 (820)
.... .....|.....+.. ...|||||||++||++++.+|++|+|||||++||+.
T Consensus 64 ----------------~~~~-~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------YIVS-KRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------HHHH-HHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------HHHH-HHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 1111 22234554444332 247999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 233 -------------SAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 233 -------------~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
...++.+.|++++++|.|+|+++|+++.
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~ 161 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEE 161 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHH
Confidence 6689999999998789999999999874
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-26 Score=255.74 Aligned_cols=170 Identities=18% Similarity=0.236 Sum_probs=136.5
Q ss_pred ccceeeeeEEEeCCc--------------------EEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCcccc
Q 003437 72 AYLLHDISGQAIRGE--------------------IMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMK 131 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge--------------------~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~ 131 (820)
+.+|++||+++++|+ +++|+||||||||||+|+|+|+.. +.+|+|.++|.+++ +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t----~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT----M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC--------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc----e
Confidence 458999999999999 999999999999999999999885 46799999997753 1
Q ss_pred ceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH--HHHHHHH
Q 003437 132 MVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG--ERRRVSI 209 (820)
Q Consensus 132 ~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG--erqRv~i 209 (820)
+ +|++|++ .++.+|+.|++.+... +.+++++++.+++.+.. ..+ .|||| ||||+.|
T Consensus 110 ~--~~v~q~~-~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~~-~~~------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 110 E--RHPYKHP-NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEYD-FFI------IISATRFKKNDIDI 167 (413)
T ss_dssp C--CEEEECS-SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGCS-EEE------EEESSCCCHHHHHH
T ss_pred e--EEecccc-ccCCeeehHhhcccch------------HHHHHHHHHHcCCCccC-CeE------EeCCCCccHHHHHH
Confidence 2 7899985 5778899888754310 13477889999987653 222 29999 9999999
Q ss_pred HHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----cEEEEEEcCccH-HHHhhcCEE
Q 003437 210 GIDIIH----------KPSLLFLDEPTSGLDSTSAYSVVEKVKDIA-----RTG----SIVLMTIHQPSY-RIQMLLDRI 269 (820)
Q Consensus 210 a~aL~~----------~P~lLllDEPtsgLD~~~~~~i~~~L~~l~-----~~g----~tvi~~~H~~~~-~i~~~~D~v 269 (820)
|++|+. +|++++|||||+|||+.++.++++.|+++. +.| .+|++++|+.+. .+.+++|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999985 322 678899998762 256667665
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-23 Score=210.42 Aligned_cols=145 Identities=16% Similarity=0.133 Sum_probs=102.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP 163 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~ 163 (820)
.++|+||||||||||+|+|+|++. |.++|.+.... ..++.+||++|+. ++.+++ + ..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~--- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF--- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETT---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhhc---
Confidence 589999999999999999999872 34555443211 2346689999975 222322 0 0000
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHHHHH
Q 003437 164 SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGID-----IIHKPSLLFLDE--PTSGLDSTSAYS 236 (820)
Q Consensus 164 ~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~a-----L~~~P~lLllDE--PtsgLD~~~~~~ 236 (820)
.. -.+..+.++ ..||||||||++||++ |+.+|++|+||| ||++||+.....
T Consensus 64 -~~----------------~~~~~~~~~-----~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 64 -FT----------------SKKLVGSYG-----VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp -CC----------------CSSEETTEE-----ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred -CC----------------ccccccccc-----cCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 00 002233333 4699999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEEc---CccHHHHhhcCEEEEEeCCeEEE
Q 003437 237 VVEKVKDIARTGSIVLMTIH---QPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 237 i~~~L~~l~~~g~tvi~~~H---~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
+.+.|++ .+.|+|+++| +.. .+..++|+ .+|+++.
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHP-LVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSH-HHHHHHTC----TTCEEEE
T ss_pred HHHHHhc---CCCeEEEEEccCCCch-HHHHHHhc----CCcEEEE
Confidence 9888865 4777888886 544 57788887 5577765
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8e-27 Score=251.81 Aligned_cols=166 Identities=17% Similarity=0.234 Sum_probs=129.1
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||++.|. ..+|+++|++|++|++++|+||||||||||+++|+|++ +|+|.
T Consensus 102 i~~~~vs~~y~-------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~-------- 155 (305)
T 2v9p_A 102 FNYQNIELITF-------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVL-------- 155 (305)
T ss_dssp HHHTTCCHHHH-------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEE--------
T ss_pred EEEEEEEEEcC-------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEE--------
Confidence 78888988873 24899999999999999999999999999999999987 48883
Q ss_pred ccccceEEEEccCCCCCCCCCHHH-HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 SYMKMVSSYVMQDDQLFPMLTVFE-TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~~~~~~~gyv~Q~~~l~~~lTV~e-~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
+|++|++.+++. |++| |+.+... .+. .+.+.++.+ |.+..+ | ..||||||||
T Consensus 156 -------~~v~q~~~lf~~-ti~~~ni~~~~~------~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqkQR 208 (305)
T 2v9p_A 156 -------SFANHKSHFWLA-SLADTRAALVDD------ATH-----ACWRYFDTY-LRNALD---G----YPVSIDRKHK 208 (305)
T ss_dssp -------CGGGTTSGGGGG-GGTTCSCEEEEE------ECH-----HHHHHHHHT-TTGGGG---T----CCEECCCSSC
T ss_pred -------EEecCccccccc-cHHHHhhccCcc------ccH-----HHHHHHHHH-hHccCC---c----cCcCHHHHHH
Confidence 467888877765 7776 7765311 121 345556654 444444 2 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccch
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 286 (820)
||+|+.+|+||| |++||+.+...+.. .+|+++. ...||+| +|++|++++.|+++++
T Consensus 209 ---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~~--~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 209 ---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQT--FRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp ---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEEE--EECCCCC-CCC---CCCCCCHHHH
T ss_pred ---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHHH--HHhCCEE-EEeCCEEEEeCCHHHH
Confidence 999999999999 99999999888862 1788763 5689999 9999999999999887
Q ss_pred hhhh
Q 003437 287 PAHL 290 (820)
Q Consensus 287 ~~~f 290 (820)
...+
T Consensus 265 ~~~y 268 (305)
T 2v9p_A 265 KSFF 268 (305)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.9e-26 Score=232.30 Aligned_cols=181 Identities=18% Similarity=0.112 Sum_probs=122.3
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
.++++| .++++||+++|+||||||||||+|+|+|+++ ...+.+.+.+.+... ..++.++|++|++.+++.+|+.+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhcC
Confidence 458888 7999999999999999999999999999874 222322222221111 12455789999988888888887
Q ss_pred HHHHHHHhcC---CCCCCHHHHHHHHHHH------HHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEE
Q 003437 152 TFMFAAEVRL---PPSISRDEKKKRVYEL------LDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFL 222 (820)
Q Consensus 152 ~l~~~~~~~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLll 222 (820)
++.+...... ..+.++++.++++++. ++.+|+.+.++.++. .|| +|+.+|++++|
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~lS-----------~l~~~p~~~~L 147 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE-----AVT-----------VFLAPPSWQDL 147 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT-----SEE-----------EEEECSCHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC-----cEE-----------EEEECCCHHHH
Confidence 7642211100 0123445555666665 556666555555443 577 89999999999
Q ss_pred eCCCCCC----CHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 223 DEPTSGL----DSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 223 DEPtsgL----D~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
||||+|| |+..+.++.++++++.+ .|.|+|+++||++ ++..+||+|++|..
T Consensus 148 Dep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 148 QARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTA 203 (207)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC---
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhcc
Confidence 9999998 78899999999999975 5899999999997 48889999999853
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-23 Score=222.99 Aligned_cols=174 Identities=16% Similarity=0.182 Sum_probs=135.5
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-------cc--cceEEEEccCCC-CC
Q 003437 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS-------YM--KMVSSYVMQDDQ-LF 144 (820)
Q Consensus 75 L~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~-------~~--~~~~gyv~Q~~~-l~ 144 (820)
++++|+++++|++++|+||||||||||++.|+|++.+ .+|+|.++|.++... .+ +..++|++|++. ++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 3578899999999999999999999999999999853 579999999887532 11 235899999988 88
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCC--EEEE
Q 003437 145 PMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPS--LLFL 222 (820)
Q Consensus 145 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~--lLll 222 (820)
|.+||+|++.++.... .. ..+++.+|+.+..+.++. +|| |||++||++|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHHH-----HHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHHH-----HHH---HHHHHHHHhhccCCCeeEEEE
Confidence 9999999998864211 10 135677888877777765 599 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCcc--------HHHHhhcCEEEEEeCCeE
Q 003437 223 DEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPS--------YRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 223 DEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~--------~~i~~~~D~v~lL~~G~i 277 (820)
| ||+|||+... ++++.+ .|.|+|++||... ..+....+.|.++..|+.
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9 9999999754 345554 5899999999432 124455678888888854
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-23 Score=220.71 Aligned_cols=148 Identities=16% Similarity=0.183 Sum_probs=99.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSIS 166 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~ 166 (820)
.++|+||||||||||+|+|+|+.. +.+|+|.++|+++.....++.++|++|++.+++.+||.||+.|+...... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~--~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE--NC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT--TC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH--HH
Confidence 479999999999999999999875 45799999999886544567799999999999999999999887543211 11
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 003437 167 RDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246 (820)
Q Consensus 167 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~ 246 (820)
.+.+.+.++ .+..+...+ .||||||||++|||+++. ++++|||+.|||+.. .+.++.+.+
T Consensus 80 ----~~~i~~~~~----~~~~~~~~~-----~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 ----WEPIEKYIN----EQYEKFLKE-----EVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp ----SHHHHHHHH----HHHHHHHHH-----HSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred ----HHHHHHHHH----HHHHhhhHH-----hcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 122333332 233444443 599999999999999886 999999999999987 556666666
Q ss_pred CCcEEEEEEcCcc
Q 003437 247 TGSIVLMTIHQPS 259 (820)
Q Consensus 247 ~g~tvi~~~H~~~ 259 (820)
. .+||+++|..+
T Consensus 140 ~-~~vI~Vi~K~D 151 (270)
T 3sop_A 140 V-VNIIPVIAKAD 151 (270)
T ss_dssp T-SEEEEEETTGG
T ss_pred c-CcEEEEEeccc
Confidence 5 89999999864
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-23 Score=237.68 Aligned_cols=193 Identities=16% Similarity=0.102 Sum_probs=152.2
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE--
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK-- 123 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~-- 123 (820)
..++++|+++.|.. +..+|+++ +.+.+||+++|+||||||||||+++|+|+.. ++.|.|.++|+
T Consensus 130 ~~l~~~~v~~~~~t-----------g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~ 195 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT-----------GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERG 195 (438)
T ss_dssp CTTTSCCCCSBCCC-----------SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCH
T ss_pred CceEEeccceecCC-----------CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceec
Confidence 45888889888742 13599999 9999999999999999999999999999985 46899999998
Q ss_pred -eCCC--------ccccceEEEEccC-CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 003437 124 -PVTT--------SYMKMVSSYVMQD-DQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGN 193 (820)
Q Consensus 124 -~~~~--------~~~~~~~gyv~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~ 193 (820)
++.. ...++.++||+|+ +.+++.+||.+|+.+.++.... ..+++ ....|.
T Consensus 196 ~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~-------~~~~v---------~~~ld~---- 255 (438)
T 2dpy_A 196 REVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD-------RGQHV---------LLIMDS---- 255 (438)
T ss_dssp HHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT-------TTCEE---------EEEEEC----
T ss_pred HHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh-------CCCCH---------HHHHHh----
Confidence 4432 1245678999995 5567788999999887653210 00000 111121
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-Cc-----EEEEEEcCccHHHHh
Q 003437 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR---T-GS-----IVLMTIHQPSYRIQM 264 (820)
Q Consensus 194 ~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~---~-g~-----tvi~~~H~~~~~i~~ 264 (820)
...+|+|| |||+|| +.+|++ |+|||+.....+.++|+++.+ + |. ||++++||++ ..
T Consensus 256 --l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~ 320 (438)
T 2dpy_A 256 --LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DP 320 (438)
T ss_dssp --HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CH
T ss_pred --HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---ch
Confidence 23599999 999999 889988 999999999999999999876 3 64 9999999997 35
Q ss_pred hcCEEEEEeCCeEEEEcCccchh
Q 003437 265 LLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 265 ~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
+||++++|.+|+++..|++.++.
T Consensus 321 iad~v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 321 IADSARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp HHHHHHHHSSEEEEECHHHHHTT
T ss_pred hhceEEEEeCcEEEEeCCHHHcc
Confidence 79999999999999999876653
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.82 E-value=6e-20 Score=202.87 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=75.9
Q ss_pred CCC-CCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHh
Q 003437 195 GRR-GVSGGERRRVSIGIDII---------HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQM 264 (820)
Q Consensus 195 ~~~-~LSGGerqRv~ia~aL~---------~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~ 264 (820)
.++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. +.
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~---- 332 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP---- 332 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT----
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc----
Confidence 345 69999999999999999 8999999999999999999999999998874 689999994 42
Q ss_pred hcCEEEEEeCCeEEEEcCccch
Q 003437 265 LLDRIIVLARGRLVYMGSPVAL 286 (820)
Q Consensus 265 ~~D~v~lL~~G~iv~~G~~~~~ 286 (820)
.+|++++|++|+++..|+++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 7999999999999999998876
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.4e-22 Score=218.34 Aligned_cols=172 Identities=16% Similarity=0.190 Sum_probs=135.4
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-------cc--cceEEEEccCCC-CCC
Q 003437 76 HDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS-------YM--KMVSSYVMQDDQ-LFP 145 (820)
Q Consensus 76 ~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~-------~~--~~~~gyv~Q~~~-l~~ 145 (820)
+++|+++++|++++|+||||||||||++.|+|++.+ .+|+|.++|.++... .+ +..++|++|++. ++|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 468889999999999999999999999999999853 479999999987532 11 345899999988 888
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCC--EEEEe
Q 003437 146 MLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPS--LLFLD 223 (820)
Q Consensus 146 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~--lLllD 223 (820)
.+||+|++.++.... .. ..+++.+|+.+..+.++. +|| |||++||++|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHHH-----HHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHHH-----HHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 899999998864311 10 135677888877777665 599 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCcc--------HHHHhhcCEEEEEeCCe
Q 003437 224 EPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPS--------YRIQMLLDRIIVLARGR 276 (820)
Q Consensus 224 EPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~--------~~i~~~~D~v~lL~~G~ 276 (820)
||+|||+.+. ++++.+ .|.|+|++||... ..+....+.|..+..|+
T Consensus 286 -pttglD~~~~------~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 286 -GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp -GGGGGGGHHH------HHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred -CCCCCCHHHH------HHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 9999998765 345554 5899999999421 12344567788887775
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-21 Score=212.83 Aligned_cols=131 Identities=17% Similarity=0.220 Sum_probs=106.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC-ccccceEEEEccCCCCCCCCCHHHH
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT-SYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~-~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
+++++|+.+++|++++|+||||||||||+|+|+|++++ .+|.|.++|.+... ...++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe--------------
Confidence 78999999999999999999999999999999999854 58999999864211 11223334332
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST 232 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~ 232 (820)
+ |||+||++||++|..+|++|++||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 233 SAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 233 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.++.+.|+.+...+.|+|+++|+++ +...+||+++|.+|+
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 2466778777654568999999997 466799999998774
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-19 Score=195.77 Aligned_cols=76 Identities=26% Similarity=0.390 Sum_probs=69.2
Q ss_pred CCCCChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEE
Q 003437 196 RRGVSGGERR------RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRI 269 (820)
Q Consensus 196 ~~~LSGGerq------Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 269 (820)
+..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.++|.|||++||++. +...||++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCEE
Confidence 4579999999 677888888899999999999999999999999999999878899999999964 57889999
Q ss_pred EEEe
Q 003437 270 IVLA 273 (820)
Q Consensus 270 ~lL~ 273 (820)
++|+
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.3e-21 Score=204.15 Aligned_cols=185 Identities=17% Similarity=0.156 Sum_probs=122.3
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCce-EEEECCEeCCCccccceEEEEccCCCCCCCCCHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEG-SVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVF 150 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G-~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~ 150 (820)
..+|+++++.+++|++++|+||||||||||++.|+|...+ .+| .|.+.+.+.......+++.++.|+.. +++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhc
Confidence 3589999999999999999999999999999999998743 346 67554443332222222233333321 1233
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH-HHHHHHHHHHhcCCCEEEEeCCCC--
Q 003437 151 ETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE-RRRVSIGIDIIHKPSLLFLDEPTS-- 227 (820)
Q Consensus 151 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe-rqRv~ia~aL~~~P~lLllDEPts-- 227 (820)
+++.... + +.++..+.++++++..++. ..+ .+..+|.+| +||+. |+++..+|++||+||||+
T Consensus 96 ~~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~------~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 96 DSLKREI-I------ENGKFDQWFDELFGNDTFH-LYD------SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHHHH-H------HHTHHHHHHHHHHSSSCEE-EEC------CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred cccccCC-C------CHHHHHHHHHHHhccCCEE-EEC------CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 3443321 1 1223334455555433331 111 123589999 66776 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHhC-CcEEEEEEcCc--cH-------------------HHHhhcCEEEEEeCCeE
Q 003437 228 -G---LDS-TSAYSVVEKVKDIART-GSIVLMTIHQP--SY-------------------RIQMLLDRIIVLARGRL 277 (820)
Q Consensus 228 -g---LD~-~~~~~i~~~L~~l~~~-g~tvi~~~H~~--~~-------------------~i~~~~D~v~lL~~G~i 277 (820)
+ +|. ....++++.|++++++ |.|||+++|+. .. .+.++||+|++|++|+.
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 555 6778899999999865 99999999996 31 46778999999999874
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.8e-24 Score=219.62 Aligned_cols=152 Identities=16% Similarity=0.112 Sum_probs=101.5
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc----cccceEEEEccCCCCCCCCC
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS----YMKMVSSYVMQDDQLFPMLT 148 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~----~~~~~~gyv~Q~~~l~~~lT 148 (820)
.-|+||||++++|++++|+||||||||||+|+|+|+. + |+|.+ |.++... ..++.++|++|++.+|+.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 4799999999999999999999999999999999977 2 89999 7765321 12356789999876655432
Q ss_pred H-HHHHH---HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHH-----HHHHhcCCCE
Q 003437 149 V-FETFM---FAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSI-----GIDIIHKPSL 219 (820)
Q Consensus 149 V-~e~l~---~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~i-----a~aL~~~P~l 219 (820)
. .+++. +....+ +.+. +.++++++...+. .+. ..||||||||++| +++|+.+|++
T Consensus 85 ~~~~~l~~~~~~~~~~---g~~~----~~i~~~l~~~~~~-----il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~ 148 (218)
T 1z6g_A 85 KNEDFLEYDNYANNFY---GTLK----SEYDKAKEQNKIC-----LFE----MNINGVKQLKKSTHIKNALYIFIKPPST 148 (218)
T ss_dssp HTTCEEEEEEETTEEE---EEEH----HHHHHHHHTTCEE-----EEE----ECHHHHHHHTTCSSCCSCEEEEEECSCH
T ss_pred hccchhhhhhcccccC---CCcH----HHHHHHHhCCCcE-----EEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCH
Confidence 1 11111 101110 1121 3466666654321 111 2599999999999 8999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 003437 220 LFLDEPTSGLDSTSAYSVVEKVKDIAR 246 (820)
Q Consensus 220 LllDEPtsgLD~~~~~~i~~~L~~l~~ 246 (820)
++|||||+++|..+...+.+.|.++.+
T Consensus 149 ~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 149 DVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999988754
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9e-24 Score=229.67 Aligned_cols=159 Identities=12% Similarity=0.109 Sum_probs=113.2
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcC
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRL 161 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~ 161 (820)
+++|++++|+||||||||||+++|+|++.+ ..|. +.++||+|++.+++. |++||+.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~~G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~--- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--WDHH--------------PRVDLVTTDGFLYPN-AELQRRNLMHR--- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--STTC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTC---
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--cCCC--------------CeEEEEecCccCCcc-cHHHHHHHHHh---
Confidence 789999999999999999999999998854 2332 457999999999988 99999864321
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 003437 162 PPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKV 241 (820)
Q Consensus 162 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L 241 (820)
.+.+.....+.+.++|+.++ .+..+..+. .|||||+||+++|++++.+|+|||+|||+..+|+..
T Consensus 147 -~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~-----~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-------- 211 (312)
T 3aez_A 147 -KGFPESYNRRALMRFVTSVK-SGSDYACAP-----VYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-------- 211 (312)
T ss_dssp -TTSGGGBCHHHHHHHHHHHH-TTCSCEEEE-----EEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------
T ss_pred -cCCChHHHHHHHHHHHHHhC-CCcccCCcc-----cCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------
Confidence 11222233456788888888 554555554 699999999999999999999999999999998621
Q ss_pred HHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 242 KDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 242 ~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
..+.+.=-.+|++.|+.+.....+.+|.+.+.+|
T Consensus 212 ~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 212 LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 1122211234555665554444445554444444
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.8e-20 Score=222.88 Aligned_cols=161 Identities=25% Similarity=0.359 Sum_probs=123.3
Q ss_pred HHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-CC-H---HHHHHHHHHH
Q 003437 103 DALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS-IS-R---DEKKKRVYEL 177 (820)
Q Consensus 103 ~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~-~---~~~~~~v~~~ 177 (820)
.|..+++. +..|+|+++|+++.. +..+||.|++.|...+..... .. . ....++..+.
T Consensus 386 ~C~g~rl~--~~~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 447 (916)
T 3pih_A 386 VCGGRRLN--REALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEF 447 (916)
T ss_dssp TTCSCCBC--TTGGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHH
T ss_pred hcccccCC--hHhcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHH
Confidence 34444443 457999999988742 223578888877544322111 00 0 0112334567
Q ss_pred HHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q 003437 178 LDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDIIHKPS--LLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMT 254 (820)
Q Consensus 178 l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~--lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~ 254 (820)
|..+||... .++.++ +|||||||||+||++|+++|+ +|||||||+|||+.....++++|++++++|.|||++
T Consensus 448 L~~vgL~~l~l~r~~~-----~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 448 LVDVGLEYLTLSRSAT-----TLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHTTTCTTCBTTSBGG-----GCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHcCCccccccCCcc-----cCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 888999764 566665 699999999999999999887 999999999999999999999999998889999999
Q ss_pred EcCccHHHHhhcCEEEEE------eCCeEEEEcCccchhh
Q 003437 255 IHQPSYRIQMLLDRIIVL------ARGRLVYMGSPVALPA 288 (820)
Q Consensus 255 ~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 288 (820)
+||++. + ..||+|++| ++|++++.|+++++..
T Consensus 523 tHd~~~-~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 523 EHDEEV-I-RNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp CCCHHH-H-HTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred eCCHHH-H-HhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 999863 4 459999999 8999999999988764
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-19 Score=207.56 Aligned_cols=77 Identities=22% Similarity=0.328 Sum_probs=71.0
Q ss_pred CCCC-ChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 196 RRGV-SGGERRRVSIGIDIIHKP--SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 196 ~~~L-SGGerqRv~ia~aL~~~P--~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
+..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |.|||++||++.. ...||++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~--~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQI--AARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHH--HHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH--HHhCCEEEEE
Confidence 4567 999999999999999999 99999999999999999999999999987 8999999999863 4579999999
Q ss_pred eCC
Q 003437 273 ARG 275 (820)
Q Consensus 273 ~~G 275 (820)
+++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 765
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.2e-21 Score=199.64 Aligned_cols=170 Identities=11% Similarity=0.110 Sum_probs=107.2
Q ss_pred cccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHH
Q 003437 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVF 150 (820)
Q Consensus 71 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~ 150 (820)
.+.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+|+.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCHh
Confidence 456999999999999999999999999999999999965 444443 2356789999985 77789999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 003437 151 ETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLD 230 (820)
Q Consensus 151 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD 230 (820)
|++.+....... ..+.....+.+.+.|+.+ .+..+..+. .||+||+||+.+ ++++.+|+++|+|||...+|
T Consensus 77 ~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~~~~-----~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 77 QKAKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTVEVP-----TYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCEEEC-----CEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred HhhhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCeecc-----cccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 998775432110 001111123444555543 334444443 699999999988 57888999999999998888
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 231 STSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 231 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
.. +.++ .+.+|++++|+.......+++++ ++|+
T Consensus 148 ~~--------l~~~--~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 148 QE--------IRDM--FHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp HH--------HHTT--CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred HH--------HHHh--cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 64 2222 37899999997443233344444 5564
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=209.76 Aligned_cols=131 Identities=24% Similarity=0.440 Sum_probs=112.2
Q ss_pred CCCHHHHHHHHHHhcCCCCCCH----------HHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHh
Q 003437 146 MLTVFETFMFAAEVRLPPSISR----------DEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDII 214 (820)
Q Consensus 146 ~lTV~e~l~~~~~~~~~~~~~~----------~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~ 214 (820)
.+||.|++.|...+.+ +. ++..+++ +.|+.+||... .++.++ +|||||||||+||++|.
T Consensus 451 ~ltV~e~~~f~e~l~l----~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~ 520 (972)
T 2r6f_A 451 AMSVTEALAFFDGLEL----TEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIG 520 (972)
T ss_dssp TSBHHHHHHHHHHCCC----CHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHh
Confidence 6899999999766543 33 2344555 45899999864 677765 69999999999999999
Q ss_pred cCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE------eCCeEEEEcCccch
Q 003437 215 HKP--SLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL------ARGRLVYMGSPVAL 286 (820)
Q Consensus 215 ~~P--~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~ 286 (820)
.+| ++|||||||+|||+.....+++.|++|.+.|.|||+++|+++. + ..||+|++| ++|++++.|+++++
T Consensus 521 ~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~-i-~~ADrIi~LgpgaG~~gG~iv~~G~~~e~ 598 (972)
T 2r6f_A 521 SRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT-M-LAADYLIDIGPGAGIHGGEVVAAGTPEEV 598 (972)
T ss_dssp TCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHH-H-HSCSEEEEECSSSGGGCCSEEEEECTTTT
T ss_pred hCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-HhCCEEEEeCCCccCCCCEEEEecCHHHH
Confidence 985 9999999999999999999999999998889999999999863 4 579999999 78999999999887
Q ss_pred hh
Q 003437 287 PA 288 (820)
Q Consensus 287 ~~ 288 (820)
..
T Consensus 599 ~~ 600 (972)
T 2r6f_A 599 MN 600 (972)
T ss_dssp TT
T ss_pred Hh
Confidence 54
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.1e-20 Score=226.83 Aligned_cols=173 Identities=20% Similarity=0.213 Sum_probs=120.8
Q ss_pred ceEEEEE-----EEEEECcccccccccccccccceeeeeEEEeC-------CcEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 003437 46 HGLEFKN-----LSYSIMKKQKKDGVWITKEAYLLHDISGQAIR-------GEIMAIMGPSGAGKSTFLDALAGRIAQGS 113 (820)
Q Consensus 46 ~~L~~~n-----ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~allGpnGsGKSTLl~~L~G~~~~~~ 113 (820)
..|+++| |++.|.+ +..+++|+++.+.+ |++++|+||||||||||||+| |++..
T Consensus 749 ~~l~i~~~rHP~l~~~~~~-----------~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG-----------DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-- 814 (1022)
T ss_dssp CCEEEEEECCCC------C-----------CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--
T ss_pred ceEEEEeccccEEEEEecC-----------CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--
Confidence 3599999 9888732 13599999999987 999999999999999999999 97631
Q ss_pred CceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 003437 114 LEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGN 193 (820)
Q Consensus 114 ~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~ 193 (820)
..+..+||||+.. .+||.|++. ..+|+.+.....
T Consensus 815 ----------------~aqiG~~Vpq~~~---~l~v~d~I~------------------------~rig~~d~~~~~--- 848 (1022)
T 2o8b_B 815 ----------------MAQMGCYVPAEVC---RLTPIDRVF------------------------TRLGASDRIMSG--- 848 (1022)
T ss_dssp ----------------HHTTTCCEESSEE---EECCCSBEE------------------------EECC-----------
T ss_pred ----------------HhheeEEeccCcC---CCCHHHHHH------------------------HHcCCHHHHhhc---
Confidence 1222349999753 345555441 112222221111
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEE
Q 003437 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSA-YSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 194 ~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~-~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
...+|+++++ +++|++++++|+++||||||+|+|+... ..++.+|+.++++ |.++|++||+.+. +..++|++.+
T Consensus 849 --~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el-~~~~~d~~~v 924 (1022)
T 2o8b_B 849 --ESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSL-VEDYSQNVAV 924 (1022)
T ss_dssp ---CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHH-HHHTSSCSSE
T ss_pred --hhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHH-HHHhCCccee
Confidence 1347776664 9999999999999999999999999985 5578999999876 9999999999875 6678999888
Q ss_pred EeCCeEE--EEcCc
Q 003437 272 LARGRLV--YMGSP 283 (820)
Q Consensus 272 L~~G~iv--~~G~~ 283 (820)
+ +|++. +.|++
T Consensus 925 ~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 925 R-LGHMACMVENEC 937 (1022)
T ss_dssp E-EEEEEEC-----
T ss_pred e-cCeEEEEEecCc
Confidence 7 58877 44443
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.8e-21 Score=208.56 Aligned_cols=194 Identities=15% Similarity=0.185 Sum_probs=139.5
Q ss_pred ceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 46 HGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 46 ~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..++.+++++.|.. +..+|+++ +.|.+||+++|+||||||||||+++|+|+.. ++.|.|.+.|++.
T Consensus 44 ~~i~~~~l~~~~~t-----------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~g~i~~~G~~~ 109 (347)
T 2obl_A 44 DPLLRQVIDQPFIL-----------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADIIVLALIGERG 109 (347)
T ss_dssp CSTTCCCCCSEECC-----------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCH
T ss_pred CCeeecccceecCC-----------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCEEEEEEecccH
Confidence 35888899988852 13599999 9999999999999999999999999999985 4579999998752
Q ss_pred CC----------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 003437 126 TT----------SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEG 195 (820)
Q Consensus 126 ~~----------~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~ 195 (820)
.. ..+++.+.+++|.+. +..+.+...... ..+.+.+...+ .+... .+ +.
T Consensus 110 ~ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~------------~~~ae~~~~~~-~~vl~-~l--d~ 168 (347)
T 2obl_A 110 REVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFTA------------TTIAEYFRDQG-KNVLL-MM--DS 168 (347)
T ss_dssp HHHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHHH------------HHHHHHHHTTT-CEEEE-EE--ET
T ss_pred HHHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHHH------------HHHHHHHHhcc-ccHHH-HH--hh
Confidence 11 113345678887542 233332211100 00111111111 11110 00 12
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEEcCccHHHHhhcCE
Q 003437 196 RRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR--TGS-----IVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~~~H~~~~~i~~~~D~ 268 (820)
+..||+|| |||++| +.+|++ |+|||+....++.++++++.+ .|. ||++++||.+ ..+||+
T Consensus 169 ~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~ 235 (347)
T 2obl_A 169 VTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDE 235 (347)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHH
T ss_pred HHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhhhh
Confidence 34699999 899999 688887 999999999999999999974 477 8999999987 357999
Q ss_pred EEEEeCCeEEEEcCccchh
Q 003437 269 IIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 269 v~lL~~G~iv~~G~~~~~~ 287 (820)
+++|.+|+++..|++.++.
T Consensus 236 v~~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 236 VRSILDGHIVLTRELAEEN 254 (347)
T ss_dssp HHHHCSEEEEBCHHHHTTT
T ss_pred eEEeeCcEEEEeCCHHHcC
Confidence 9999999999999877653
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.4e-19 Score=204.44 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=119.4
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHH
Q 003437 79 SGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAE 158 (820)
Q Consensus 79 s~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~ 158 (820)
++.+.+|++++|+||||||||||+++++|...+ .|+ +.+.|++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 558999999999999999999999999997643 242 12456677641 12222221
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----H
Q 003437 159 VRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST-----S 233 (820)
Q Consensus 159 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~-----~ 233 (820)
+. +.+. ++ +...|+.+..+..+ ..|||||+||+.+|+++..+|++|++| ||+|||.. .
T Consensus 330 -~~--g~~~-------~~-~~~~g~~~~~~~~p-----~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SW--GMDF-------EE-MERQNLLKIVCAYP-----ESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TT--SCCH-------HH-HHHTTSEEECCCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -Hc--CCCH-------HH-HHhCCCEEEEEecc-----ccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 11 1221 12 23456655555443 469999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCcEEEEEEcCc----------cHHHHhhcCEEEEEeCCe
Q 003437 234 AYSVVEKVKDIARTGSIVLMTIHQP----------SYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 234 ~~~i~~~L~~l~~~g~tvi~~~H~~----------~~~i~~~~D~v~lL~~G~ 276 (820)
+..+.++++.+++.|.|||+++|+. . .+..+||+|++|++|+
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~-~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDS-HISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSS-CCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCc-ccceeeeEEEEEEEEE
Confidence 9999999999988899999999998 4 3667899999999887
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-18 Score=210.57 Aligned_cols=180 Identities=18% Similarity=0.236 Sum_probs=129.3
Q ss_pred CCCCcHHHHHHHHHcCCCC-------CCCceEEEECCEeCCCc---cccceEEEEccCC---CCCC----CCCHHHHHHH
Q 003437 93 PSGAGKSTFLDALAGRIAQ-------GSLEGSVRIDGKPVTTS---YMKMVSSYVMQDD---QLFP----MLTVFETFMF 155 (820)
Q Consensus 93 pnGsGKSTLl~~L~G~~~~-------~~~~G~I~i~G~~~~~~---~~~~~~gyv~Q~~---~l~~----~lTV~e~l~~ 155 (820)
.+..||++|.+.+....=| .+..|+|.++|+++... ...+..+++.|.+ .... .++- ++...
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i 348 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRP-EQAIA 348 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCS-SHHHH
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccchhhcch-hhHHH
Confidence 4567899999988773211 23578899999887531 1122222332211 0000 0000 01111
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHH
Q 003437 156 AAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THTYIGNEGRRGVSGGERRRVSIGIDIIHKP--SLLFLDEPTSGLDST 232 (820)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P--~lLllDEPtsgLD~~ 232 (820)
+..+ .++..++++ .|..+||.+. .++.+. +|||||||||+||++|+.+| ++|||||||+|||+.
T Consensus 349 ~~~i-------~~ei~~rl~-~L~~vGL~~l~l~r~~~-----tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~ 415 (842)
T 2vf7_A 349 LQRM-------AADLVKRLD-VLLHLGLGYLGLDRSTP-----TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPA 415 (842)
T ss_dssp HHHH-------HHHHHHHHH-HHHHTTCTTSBTTCBGG-----GSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGG
T ss_pred HHHH-------HHHHHHHHH-HHHhCCCCcCCccCCcC-----cCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHH
Confidence 1111 234556666 6889999865 677665 69999999999999999999 599999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE------eCCeEEEEcCccchhh
Q 003437 233 SAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL------ARGRLVYMGSPVALPA 288 (820)
Q Consensus 233 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 288 (820)
....++++|++|.+.|.|||+++|+++ +...||+|++| ++|++++.|+++++..
T Consensus 416 ~~~~L~~~l~~L~~~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 416 DTEALLSALENLKRGGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp GHHHHHHHHHHHHTTTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 999999999999988999999999996 34679999999 7899999999988754
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-19 Score=218.26 Aligned_cols=161 Identities=19% Similarity=0.247 Sum_probs=114.0
Q ss_pred cccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHH
Q 003437 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVF 150 (820)
Q Consensus 71 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~ 150 (820)
.+.+++|+++.+.+|++++|+||||||||||||+|++.... ...| +|||++...++.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~-aq~G------------------~~vpa~~~~~~~---- 704 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM-AQIG------------------CFVPCESAEVSI---- 704 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH-HHHT------------------CCBSEEEEEEEC----
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH-HhcC------------------CccccccccchH----
Confidence 34699999999999999999999999999999999432100 0001 011111000000
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHH--hcCCCEEEEeCCCCC
Q 003437 151 ETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDI--IHKPSLLFLDEPTSG 228 (820)
Q Consensus 151 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL--~~~P~lLllDEPtsg 228 (820)
+++++..+|+.+. . .+++|+|+++++.+|++| +++|+++||||||+|
T Consensus 705 -----------------------~d~i~~~ig~~d~---l-----~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~G 753 (934)
T 3thx_A 705 -----------------------VDCILARVGAGDS---Q-----LKGVSTFMAEMLETASILRSATKDSLIIIDELGRG 753 (934)
T ss_dssp -----------------------CSEEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCS
T ss_pred -----------------------HHHHHHhcCchhh---H-----HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCC
Confidence 0011112222211 1 135889988888888888 999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchh
Q 003437 229 LDSTSAYSV-VEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALP 287 (820)
Q Consensus 229 LD~~~~~~i-~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 287 (820)
||+.....+ ..+++.+++ .|.++|++||+.+ +..++|++..+.+|++...++.+++.
T Consensus 754 lD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e--l~~lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 754 TSTYDGFGLAWAISEYIATKIGAFCMFATHFHE--LTALANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG--GGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH--HHHHhcccceeEeeEEEEEecCCcEE
Confidence 999999888 677788876 4999999999975 56799999999999999988877654
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-21 Score=223.68 Aligned_cols=169 Identities=16% Similarity=0.118 Sum_probs=119.2
Q ss_pred ccceeeeeE-EEeCCcEEEEEcCCCCcHHHHHHH--HHcCCCCCCCceEEEECCEeCCCc--cccceEEEEccCCCCCCC
Q 003437 72 AYLLHDISG-QAIRGEIMAIMGPSGAGKSTFLDA--LAGRIAQGSLEGSVRIDGKPVTTS--YMKMVSSYVMQDDQLFPM 146 (820)
Q Consensus 72 ~~iL~~vs~-~i~~Ge~~allGpnGsGKSTLl~~--L~G~~~~~~~~G~I~i~G~~~~~~--~~~~~~gyv~Q~~~l~~~ 146 (820)
..+|++|++ .+++||+++|+||||||||||+++ ++|+.++ .+|.|+++|++.... ...+.+||++|+....+.
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~--~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~ 102 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF--DEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK 102 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc
Confidence 469999999 999999999999999999999999 7898753 479999999874221 123456899987532111
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCC
Q 003437 147 LTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPT 226 (820)
Q Consensus 147 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPt 226 (820)
+.+ ..... . +...++++.++|.+..+..+. .|||| +|+++++||||
T Consensus 103 ------l~~---~~~~~--~-----~~~~~~l~~~~l~~~~~~~~~-----~LS~g-------------~~~~lilDe~t 148 (525)
T 1tf7_A 103 ------LFI---LDASP--D-----PEGQEVVGGFDLSALIERINY-----AIQKY-------------RARRVSIDSVT 148 (525)
T ss_dssp ------EEE---EECCC--C-----SSCCSCCSSHHHHHHHHHHHH-----HHHHH-------------TCSEEEEECST
T ss_pred ------EEE---EecCc--c-----cchhhhhcccCHHHHHHHHHH-----HHHHc-------------CCCEEEECCHH
Confidence 100 00000 0 001112233333333333322 35554 58899999999
Q ss_pred C-----CCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHH--------HHhhcCEEEEEeCCe
Q 003437 227 S-----GLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYR--------IQMLLDRIIVLARGR 276 (820)
Q Consensus 227 s-----gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~--------i~~~~D~v~lL~~G~ 276 (820)
+ +||+..+..+.++++.+++.|.|||+++|+++.. +..+||+|++|++|+
T Consensus 149 ~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 149 SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 8 4699999999999999988899999999999752 345699999999854
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-19 Score=181.99 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=97.9
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-----CceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHH
Q 003437 80 GQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGS-----LEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFM 154 (820)
Q Consensus 80 ~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~-----~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~ 154 (820)
+-+++|++++|+||||||||||+++|+|...+.+ ..|.|++++.+... .+.+++++|+..+++. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5799999999999999999999999999654322 23466666643211 1123344444333332 3333322
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH-HHHHHHHHHHhc-------CCCEEEEeCCC
Q 003437 155 FAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE-RRRVSIGIDIIH-------KPSLLFLDEPT 226 (820)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe-rqRv~ia~aL~~-------~P~lLllDEPt 226 (820)
+. ...++++ ++++..+.+++. +|+++++||||
T Consensus 96 ~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 VA----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EE----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EE----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 11 0123333 233455555554 89999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHh-CCcEEEEEEcCccH---HHHhhcCEEEEEeCCe
Q 003437 227 SGLDST-------S-----AYSVVEKVKDIAR-TGSIVLMTIHQPSY---RIQMLLDRIIVLARGR 276 (820)
Q Consensus 227 sgLD~~-------~-----~~~i~~~L~~l~~-~g~tvi~~~H~~~~---~i~~~~D~v~lL~~G~ 276 (820)
++||+. . ..++++.|+++++ .|.|||+++|.... .+...+|++++|++|+
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 999984 2 2378888888875 49999999994431 3677899999998753
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-17 Score=159.15 Aligned_cols=80 Identities=25% Similarity=0.364 Sum_probs=72.2
Q ss_pred CCCCCChHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCE
Q 003437 195 GRRGVSGGERRRVSIG------IDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia------~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 268 (820)
.+..||||||||++|| ++|+.+|++|||||||+|||+.++..+.+.|+++.++|.|||++||++. +..+||+
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~--~~~~~d~ 131 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADH 131 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSE
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH--HHHhCCE
Confidence 3567999999999876 8999999999999999999999999999999999877999999999984 5689999
Q ss_pred EEEE--eCCe
Q 003437 269 IIVL--ARGR 276 (820)
Q Consensus 269 v~lL--~~G~ 276 (820)
+++| .+|.
T Consensus 132 ii~l~~~~g~ 141 (148)
T 1f2t_B 132 VIRISLENGS 141 (148)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEcCCCe
Confidence 9999 4564
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-18 Score=182.65 Aligned_cols=133 Identities=20% Similarity=0.317 Sum_probs=98.9
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
.+|+++| +++|++++|+||||||||||+++|+|++.+. .+|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g~~i~~~-~~~~~~~v~q~------------ 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEYV-FKHKKSIVNQR------------ 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEESSCCSC-CCCSSSEEEEE------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcCCcceee-cCCcceeeeHH------------
Confidence 3899999 8999999999999999999999999987431 279999998765321 11111122220
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST 232 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~ 232 (820)
.+|++. ..+ |++||++|..+|++|++|||| |+.
T Consensus 79 ---------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 79 ---------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ---------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ---------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 233321 123 899999999999999999999 998
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 233 SAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 233 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
+...++ +. ++.|.+|++++|+.+ +...+||++.|..
T Consensus 112 ~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 866544 33 356999999999987 4578999888753
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-18 Score=211.21 Aligned_cols=145 Identities=19% Similarity=0.230 Sum_probs=100.5
Q ss_pred cccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHH
Q 003437 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVF 150 (820)
Q Consensus 71 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~ 150 (820)
++.|++|||+.+++|++++|+||||||||||||+|++..... ..| ..+... . +.+..-+.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-q~g------~~vpa~--~---~~i~~~d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-QIG------SYVPAE--E---ATIGIVDGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-HHT------CCBSSS--E---EEEECCSEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-hcC------ccccch--h---hhhhHHHHHHHhCChH
Confidence 356999999999999999999999999999999998753110 001 001000 0 1111111122222222
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 003437 151 ETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLD 230 (820)
Q Consensus 151 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD 230 (820)
+ ..... ...+|+||+|++.|+++ +.+|+++||||||+|||
T Consensus 727 d----------------------------------~l~~~-----~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 D----------------------------------NIYKG-----RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred H----------------------------------HHHHh-----HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 1 11111 13599999999999998 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCcEEEEEEcCccHHHHhhcCEE
Q 003437 231 STSAYSVV-EKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRI 269 (820)
Q Consensus 231 ~~~~~~i~-~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v 269 (820)
+.....+. .+++.+++ .|.|+|++||+++ +.+++|+.
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 99999998 77888875 5999999999976 44667653
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-19 Score=194.34 Aligned_cols=164 Identities=17% Similarity=0.188 Sum_probs=86.8
Q ss_pred EEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC-CCCCCCceEEEECCEeCCCcc
Q 003437 51 KNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR-IAQGSLEGSVRIDGKPVTTSY 129 (820)
Q Consensus 51 ~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~-~~~~~~~G~I~i~G~~~~~~~ 129 (820)
+||+++|++ +.+++++++.| +|+||||+|||||+++|.|. .. +.+| |.++|.++....
T Consensus 2 ~~l~~~~~~------------~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~ 60 (301)
T 2qnr_A 2 SNLPNQVHR------------KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTV 60 (301)
T ss_dssp ----------------------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------
T ss_pred CCCcceECC------------EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcc
Confidence 467777743 35999999998 99999999999999999997 43 4568 888887765322
Q ss_pred ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHH
Q 003437 130 MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSI 209 (820)
Q Consensus 130 ~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~i 209 (820)
..+.++|++|++.+...+||.|+..++.... ..+.....++.+. +..+.++ +++|||||||+.+
T Consensus 61 ~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~-----~~e~~~~l~~~l~------~~~~~~~-----~~~sgg~rqrv~~ 124 (301)
T 2qnr_A 61 QIEASTVEIEERGVKLRLTVVDTPGYGDAIN-----CRDCFKTIISYID------EQFERYL-----HDESGLNRRHIID 124 (301)
T ss_dssp ----CEEEEC---CCEEEEEEEEC----------------CTTHHHHHH------HHHHHHH-----HHHTSSCCTTCCC
T ss_pred eEeeEEEEecCCCcccCcchhhhhhhhhhcC-----cHHHHHHHHHHHH------HHHHHHH-----HHhCHHhhhhhhh
Confidence 2345689999888888889999887754321 0001111122211 2233444 3699999999999
Q ss_pred HHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCcc
Q 003437 210 GIDIIHKPSLLFLDEPTS-GLDSTSAYSVVEKVKDIART-GSIVLMTIHQPS 259 (820)
Q Consensus 210 a~aL~~~P~lLllDEPts-gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~ 259 (820)
||+++ +|++||||+ |||+... +.++++.++ +.++|++.||..
T Consensus 125 ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 125 NRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred hhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 88875 999999998 4999873 566666553 789999999974
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.9e-20 Score=186.99 Aligned_cols=146 Identities=15% Similarity=0.096 Sum_probs=114.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCC--CCCCHHHHHHHHHHh
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLF--PMLTVFETFMFAAEV 159 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~--~~lTV~e~l~~~~~~ 159 (820)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ +.+|+.+++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNYD- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT-
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCCC-
Confidence 468999999999999999999999997621 468999998776 56799888655321
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH----HHHHHHHHHHhcCCCEEEEeCCCCC-------
Q 003437 160 RLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE----RRRVSIGIDIIHKPSLLFLDEPTSG------- 228 (820)
Q Consensus 160 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe----rqRv~ia~aL~~~P~lLllDEPtsg------- 228 (820)
.+.....+++.++++.+++.+..+..+ ..+|+|| +||++++++++.+|.++++||||++
T Consensus 61 -----~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 61 -----HPDAFDLALYLEHAQALLRGLPVEMPV-----YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp -----SGGGBCHHHHHHHHHHHHTTCCEEECC-----EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred -----ChhhhhHHHHHHHHHHHHcCCCcCCCc-----ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 111112345777888888877665543 3599996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCcEEEEEEcCcc
Q 003437 229 LDSTSAYSVVEKVKDI-ARTGSIVLMTIHQPS 259 (820)
Q Consensus 229 LD~~~~~~i~~~L~~l-~~~g~tvi~~~H~~~ 259 (820)
||+....++.+.+++. .++|.|++.++|+..
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999886 456999999999753
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.2e-18 Score=202.58 Aligned_cols=146 Identities=22% Similarity=0.230 Sum_probs=106.3
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
+.+++|+|++ |++++|+||||||||||||+|+|+... +..|.+. .. .+..+++++| +++.+++.|
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v------pa--~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV------PA--EEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB------SS--SEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee------eh--hccceeeHHH---hhccCCHHH
Confidence 5699999999 999999999999999999999997521 1245432 11 1344677766 555566655
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHH--hcCCCEEEEeCC---C
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDI--IHKPSLLFLDEP---T 226 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL--~~~P~lLllDEP---t 226 (820)
++. .++|+|+++++.+++++ +++|+++||||| |
T Consensus 631 ~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 631 DLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 431 14899999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 227 SGLDSTSA-YSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 227 sgLD~~~~-~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
++||..+. ..+++.|++ .|.++|++||+.+ ...++ .-.+.++++....
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~--~~~v~n~~~~~~~ 717 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG--LPRLKNLHVAARE 717 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC--CTTEEEEEEEEEC
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh--hhcceEEEEEEEE
Confidence 99999875 578888766 5899999999975 34454 2223445554443
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-16 Score=180.38 Aligned_cols=74 Identities=15% Similarity=0.225 Sum_probs=68.0
Q ss_pred CCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 198 GVSGGERRRVSIGIDII----HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~----~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
.||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.+++.++|++||++. ....||+++.|.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~--~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHH--HHHhCCEEEEEE
Confidence 49999999999999999 589999999999999999999999999998766889999999964 567899999986
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-18 Score=185.50 Aligned_cols=149 Identities=13% Similarity=0.179 Sum_probs=109.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCcc---------ccceEEEEccCCCCCCCCCHHHHHH
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY---------MKMVSSYVMQDDQLFPMLTVFETFM 154 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~---------~~~~~gyv~Q~~~l~~~lTV~e~l~ 154 (820)
+|++++|+||||||||||+++|+|++.+ .+|+|.++|.++.... .+..++|++|+..++|.+||.|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 6999999999999999999999999854 5799999999875311 1245799999999899899999998
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 003437 155 FAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSA 234 (820)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~ 234 (820)
++.... . -..+++..|+.+..+.. ++..++||++|||+|+.+|+.++| .||+.+.
T Consensus 179 ~~~~~~----~--------d~~llDt~G~~~~~~~~--------~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARG----Y--------DLLFVDTAGRLHTKHNL--------MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHT----C--------SEEEECCCCCCTTCHHH--------HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCC----C--------CEEEecCCCCCCchHHH--------HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 653211 0 00123344544333222 455569999999999999994444 4555555
Q ss_pred HHHHHHHHHHHhC-CcEEEEEEcCcc
Q 003437 235 YSVVEKVKDIART-GSIVLMTIHQPS 259 (820)
Q Consensus 235 ~~i~~~L~~l~~~-g~tvi~~~H~~~ 259 (820)
.++++.++++.+. |.|+|++||+..
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 6677778887754 999999999854
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-18 Score=205.94 Aligned_cols=195 Identities=16% Similarity=0.142 Sum_probs=120.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeee----------eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCce
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDI----------SGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEG 116 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G 116 (820)
.++++||++.|..+. +++|+.+ ++.++. ++|+|||||||||||++|+|+..| ..+|
T Consensus 10 ~i~~~~l~~~~~~~~----------r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG 75 (608)
T 3szr_A 10 SVAENNLCSQYEEKV----------RPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALP-RGSG 75 (608)
T ss_dssp ----------CHHHH----------HHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------
T ss_pred hhhhhhhhHHHHHHH----------HHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCC-CCCC
Confidence 488999999986432 1233222 344443 999999999999999999998744 2589
Q ss_pred EEEECCEeCCC------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 003437 117 SVRIDGKPVTT------SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTY 190 (820)
Q Consensus 117 ~I~i~G~~~~~------~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 190 (820)
.|+++|.++.. ..+++.++|++|+..+++.+||+|++.++....... ..++..
T Consensus 76 ~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~----------------~~~~s~----- 134 (608)
T 3szr_A 76 IVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGE----------------GMGISH----- 134 (608)
T ss_dssp -CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCS----------------SSCCCS-----
T ss_pred eEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCC----------------ccccch-----
Confidence 99999998521 235667899999999999999999998764321000 001111
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHh--CCcEEEEEEcCccH--
Q 003437 191 IGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEP------TSGLDSTSAYSVVEKVKDIAR--TGSIVLMTIHQPSY-- 260 (820)
Q Consensus 191 ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEP------tsgLD~~~~~~i~~~L~~l~~--~g~tvi~~~H~~~~-- 260 (820)
+++.++.+....|+++|+||| |+|||+....++.++++++.+ .+.++++++|+.+.
T Consensus 135 --------------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~ 200 (608)
T 3szr_A 135 --------------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIAT 200 (608)
T ss_dssp --------------CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTT
T ss_pred --------------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhcc
Confidence 112222233458999999999 999999999999999999754 37788999998762
Q ss_pred ----HHHhh-----cCEEEEEeCCeEEEEcCccchhhhh
Q 003437 261 ----RIQML-----LDRIIVLARGRLVYMGSPVALPAHL 290 (820)
Q Consensus 261 ----~i~~~-----~D~v~lL~~G~iv~~G~~~~~~~~f 290 (820)
.+.+. ...|.++.++.++..|+.+++...+
T Consensus 201 ~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l 239 (608)
T 3szr_A 201 TEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVV 239 (608)
T ss_dssp CHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC
T ss_pred HHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHH
Confidence 12222 2458888888888778766555443
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.7e-18 Score=187.60 Aligned_cols=166 Identities=20% Similarity=0.186 Sum_probs=106.6
Q ss_pred ceeee-eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCc----eE-EEECCEeCCCccccceEEEEccCCCCCCCC
Q 003437 74 LLHDI-SGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GS-VRIDGKPVTTSYMKMVSSYVMQDDQLFPML 147 (820)
Q Consensus 74 iL~~v-s~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~----G~-I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~l 147 (820)
.|+++ ++.+++|++++|+||||||||||++.|++.....+.+ |+ |++++.+.. .++.+++++|+..+++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 56665 6899999999999999999999999999986322233 67 888886541 13345667776554433
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh-------cCCCEE
Q 003437 148 TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII-------HKPSLL 220 (820)
Q Consensus 148 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~-------~~P~lL 220 (820)
++.||+.+... . -|.+++|++.++++++ .+|++|
T Consensus 195 ~v~~ni~~~~~------~---------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYVARA------F---------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEEEEC------C---------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEEEec------C---------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 44444332110 0 1345566666666666 789999
Q ss_pred EEeCCCCCCCHHH------------HHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCc
Q 003437 221 FLDEPTSGLDSTS------------AYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283 (820)
Q Consensus 221 llDEPtsgLD~~~------------~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~ 283 (820)
++||||++||+.. ..++++.|+++++ .|.|||+++|.... ....++....+..|+++.++..
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~-~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAR-PDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTCS
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccc-cccccCCccccCCcceEeecCc
Confidence 9999999999852 4667777788776 48999999998753 4444556666677777666553
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.1e-17 Score=198.21 Aligned_cols=156 Identities=15% Similarity=0.168 Sum_probs=109.8
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
+.+++|+++. ++|++++|+||||||||||||+|+|+.... ..| ..+... +..+++++| +++.+++.|
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~-q~G------~~vpa~--~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA-YIG------SYVPAQ--KVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH-TTT------CCBSSS--EEEECCCCE---EEEEEC---
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH-hcC------cccchh--cccceeHHH---HHhhCCHHH
Confidence 4699999999 999999999999999999999999974211 112 112111 123455554 555566665
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDS 231 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~ 231 (820)
++... + ..+|++++ +++.+..++++|+++|||||++|+|+
T Consensus 662 ~l~~~--------------------------~-------------stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG--------------------------R-------------STFMVEMT-ETANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh--------------------------h-------------hhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCCh
Confidence 54221 0 13566665 45555567999999999999999999
Q ss_pred HHHHHH-HHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcC
Q 003437 232 TSAYSV-VEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282 (820)
Q Consensus 232 ~~~~~i-~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~ 282 (820)
.....+ ..+++.+.+ .|.++|++||+.+. ..++|++..+.+|++.+...
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el--~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFEL--TQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGGG--GGHHHHSTTEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHHH--HHHhhhhhceEEEEEEEEEc
Confidence 887776 788888887 49999999999863 56899887888888876543
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-15 Score=161.25 Aligned_cols=151 Identities=18% Similarity=0.184 Sum_probs=105.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVR 160 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~ 160 (820)
-+.+|++++|+||||||||||++.|++... .|++. .|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~~-~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPDL-LEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCCT-TCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCCc-CCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 478999999999999999999999998653 36553 3544321 2356787665421 01111111 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHH---HH
Q 003437 161 LPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTS--GLDSTS---AY 235 (820)
Q Consensus 161 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPts--gLD~~~---~~ 235 (820)
. .... ..++++++.+++.+..+..+ ..||+||+|++ ++++.+|+++++||||+ ++|... ..
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~~~-----~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGSLP-----NIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTSCC-----CTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCCCc-----ccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 1222 23566788888877655544 46999998876 68889999999999999 999744 48
Q ss_pred HHHHHHHHHHh-CCcEEEEEEcCcc
Q 003437 236 SVVEKVKDIAR-TGSIVLMTIHQPS 259 (820)
Q Consensus 236 ~i~~~L~~l~~-~g~tvi~~~H~~~ 259 (820)
++++.|+++++ .|.|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 88999999974 5999999999975
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.7e-18 Score=171.49 Aligned_cols=157 Identities=13% Similarity=0.108 Sum_probs=103.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP 163 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~ 163 (820)
|++++|+||||||||||+++|+|++. .+| |.++|...... ..++.+||++|+. ... ++++ +++.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~--- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVG--- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hccc---
Confidence 78999999999999999999999874 469 99999877432 3467789999975 111 1111 0000
Q ss_pred CCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHHHHH-HHHH---HHhcCCCEEEEeC--CCCCCCHHHHHH
Q 003437 164 SISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRGVSGGERRRV-SIGI---DIIHKPSLLFLDE--PTSGLDSTSAYS 236 (820)
Q Consensus 164 ~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSGGerqRv-~ia~---aL~~~P~lLllDE--PtsgLD~~~~~~ 236 (820)
++.++ ..+..++. +...+|+|||+++ ++++ |++.+|++||+|| |+..+|....
T Consensus 66 -----------------~~~~~~~~~~~v~~-~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~-- 125 (189)
T 2i3b_A 66 -----------------LEPPPGKRECRVGQ-YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFI-- 125 (189)
T ss_dssp -----------------CCCCSSSCCEESSS-SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHH--
T ss_pred -----------------ccCCccccccccce-EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHH--
Confidence 01111 01113332 2235999999988 4444 5789999999999 8989998754
Q ss_pred HHHHHHHHHhCCcEEEE----EEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 237 VVEKVKDIARTGSIVLM----TIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 237 i~~~L~~l~~~g~tvi~----~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
+.|+++.+...++|+ ++|+.+ ..+.|+|..+.+|+++.-.
T Consensus 126 --~~l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 126 --QAVRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp --HHHHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred --HHHHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 444555444555553 238764 2356777777888888643
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.4e-16 Score=158.27 Aligned_cols=169 Identities=12% Similarity=0.073 Sum_probs=109.9
Q ss_pred ccceeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccc---eEEEEccCCCCCCCC
Q 003437 72 AYLLHDISG-QAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKM---VSSYVMQDDQLFPML 147 (820)
Q Consensus 72 ~~iL~~vs~-~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~---~~gyv~Q~~~l~~~l 147 (820)
...|+++.+ .+++|++++|+||||||||||++.|++...+ ..|.|.+.+.+.......+ ..++.+|+.... .+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KL 85 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CE
Confidence 347888885 8999999999999999999999999987532 2466655443322110000 011111110000 00
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCC--EEEEeCC
Q 003437 148 TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPS--LLFLDEP 225 (820)
Q Consensus 148 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~--lLllDEP 225 (820)
.+ ++.....++ ...+ ....|.++.++...+.....+|+ +|++|||
T Consensus 86 ~~------------------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~ 132 (235)
T 2w0m_A 86 II------------------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSV 132 (235)
T ss_dssp EE------------------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETG
T ss_pred EE------------------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECc
Confidence 00 000000000 0011 12359999998888888888999 9999999
Q ss_pred CCCC--CHHHHHHHHHHHHHHHh-CCcEEEEEEcCcc-------HHHHhhcCEEEEEeCCe
Q 003437 226 TSGL--DSTSAYSVVEKVKDIAR-TGSIVLMTIHQPS-------YRIQMLLDRIIVLARGR 276 (820)
Q Consensus 226 tsgL--D~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~-------~~i~~~~D~v~lL~~G~ 276 (820)
|+++ |+....++++.|+++++ .|.|||+++|+.. ..+..+||++++|++.+
T Consensus 133 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 133 SALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp GGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred hHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 9888 99999999999999975 5999999999982 23778899999998653
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-17 Score=168.64 Aligned_cols=179 Identities=13% Similarity=0.090 Sum_probs=98.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC---CCCCceEEEECCE
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIA---QGSLEGSVRIDGK 123 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~---~~~~~G~I~i~G~ 123 (820)
.|+++||++.|.. .+|++ +.+.+|+.++|+|+||||||||+|.|+|... ..++.|.+.+.+.
T Consensus 3 ~l~~~~~~~~~~~-------------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 3 NLNYQQTHFVMSA-------------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp --------CEEEE-------------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred chhhhhhhheeec-------------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 3889999999842 36777 7889999999999999999999999999761 0234566543221
Q ss_pred e-CC-CccccceEEEEccCCCCCCCCC---HHHHHHHHHHh-cC----------CCCCCHHHHHHHHHHHHHHcCCCcc-
Q 003437 124 P-VT-TSYMKMVSSYVMQDDQLFPMLT---VFETFMFAAEV-RL----------PPSISRDEKKKRVYELLDQLGLRSA- 186 (820)
Q Consensus 124 ~-~~-~~~~~~~~gyv~Q~~~l~~~lT---V~e~l~~~~~~-~~----------~~~~~~~~~~~~v~~~l~~lgL~~~- 186 (820)
- +. ........|+..++ .+.-. .+..+...... +. ....+. ..+.+.++++..++...
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~ 142 (210)
T 1pui_A 68 FEVADGKRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVLV 142 (210)
T ss_dssp EEEETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEEE
T ss_pred EEecCCEEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeEE
Confidence 0 00 00000000111000 00000 11122111110 00 001121 22345566777777643
Q ss_pred ccccccCCCCCCCChHHHHH-HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcE
Q 003437 187 THTYIGNEGRRGVSGGERRR-VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI 250 (820)
Q Consensus 187 ~~~~ig~~~~~~LSGGerqR-v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~t 250 (820)
..+++. .+|+||||| +..+++++.+|+++++|||||++|.....++++.|.++..+|.|
T Consensus 143 v~nK~D-----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 143 LLTKAD-----KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EEECGG-----GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred EEeccc-----CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 244443 589999999 89999999999999999999999999999999999998766544
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.4e-17 Score=182.04 Aligned_cols=164 Identities=16% Similarity=0.170 Sum_probs=97.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|.++||+++|.+ +.+++|+||+| +|+|+||||||||+++|+|...+.+..|.+.+++.+
T Consensus 11 ~l~~~~l~~~y~~------------~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~-- 70 (418)
T 2qag_C 11 YVGFANLPNQVYR------------KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK-- 70 (418)
T ss_dssp ----CCCCCCTTT------------TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-------
T ss_pred cEEEEecceeECC------------EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc--
Confidence 4899999988753 35899999998 999999999999999999987532222322222211
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
....+.++|++|++.+++.+||.||+.+..... ..+....+.+.++. .++.+++||
T Consensus 71 -t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~~-----------------~~~~~l~qr 126 (418)
T 2qag_C 71 -TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYIDS-----------------KFEDYLNAE 126 (418)
T ss_dssp -CCEEEEEECC------CEEEEEEECC-----------------CHHHHHHHHH-----------------HHHHHTTTS
T ss_pred -ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHHH-----------------HHHHHHHHH
Confidence 112345789999988888899999987764321 11111112111211 266677889
Q ss_pred HHHHHHHhcCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCcc
Q 003437 207 VSIGIDIIHKPS---LLFLDEPT-SGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259 (820)
Q Consensus 207 v~ia~aL~~~P~---lLllDEPt-sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 259 (820)
++||++++.+|+ +|++|||| .|||+... ++++.+.. +.+||+++|..+
T Consensus 127 ~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 127 SRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp CC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred HHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence 999999999999 99999999 69998773 44455543 788888888754
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.4e-16 Score=172.88 Aligned_cols=128 Identities=20% Similarity=0.278 Sum_probs=89.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVR 160 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~ 160 (820)
...+|++++|+|||||||||||++|+|++.+. ..|.|...+.++.. ..+...+++.|.......++
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~~~~------------ 184 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVHRDTLG------------ 184 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBTTTBSC------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeeccccCC------------
Confidence 67889999999999999999999999987432 24666554433321 12222345555432211111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 003437 161 LPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240 (820)
Q Consensus 161 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~ 240 (820)
-.+ +||++|..+|++|++|||| |..+ ++.
T Consensus 185 ----------------------------------------~~~----~La~aL~~~PdvillDEp~---d~e~----~~~ 213 (356)
T 3jvv_A 185 ----------------------------------------FSE----ALRSALREDPDIILVGEMR---DLET----IRL 213 (356)
T ss_dssp ----------------------------------------HHH----HHHHHTTSCCSEEEESCCC---SHHH----HHH
T ss_pred ----------------------------------------HHH----HHHHHhhhCcCEEecCCCC---CHHH----HHH
Confidence 111 8999999999999999999 6555 444
Q ss_pred HHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 241 VKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 241 L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
+.+++..|.+||+++|+.+. + ..+||++.|..|
T Consensus 214 ~~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHHTTCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred HHHHHhcCCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 45556779999999999984 4 779999888554
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-16 Score=164.36 Aligned_cols=149 Identities=19% Similarity=0.257 Sum_probs=99.7
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCH----HHHHH
Q 003437 79 SGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTV----FETFM 154 (820)
Q Consensus 79 s~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV----~e~l~ 154 (820)
.-..++|++++|+||||||||||+|+|+|+.++....|.|.+.+++.... .++.++|++|++..|+.+++ .|++.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 44678999999999999999999999999885323689999988765432 24457899997655444333 12111
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 003437 155 FAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSA 234 (820)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~ 234 (820)
+.. ... +.| +++ +..++..++++||| ||+.++
T Consensus 89 ~~~-------------------------------~~y------g~~---~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 89 VFG-------------------------------NYY------GTS---REA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp ETT-------------------------------EEE------EEE---HHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHh-------------------------------ccC------CCC---HHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 100 001 111 222 34455668999999 999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhhhh
Q 003437 235 YSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHL 290 (820)
Q Consensus 235 ~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f 290 (820)
.++.+.+. ++.||++++|+++. +.+ |+ +.+| .++++++...+
T Consensus 121 ~~i~~~l~----~~~tI~i~th~~~~-l~~---Rl--~~rG----~~~~e~i~~rl 162 (219)
T 1s96_A 121 QQIRQKMP----HARSIFILPPSKIE-LDR---RL--RGRG----QDSEEVIAKRM 162 (219)
T ss_dssp HHHHHHCT----TCEEEEEECSSHHH-HHH---HH--HTTS----CSCHHHHHHHH
T ss_pred HHHHHHcc----CCEEEEEECCCHHH-HHH---HH--HHcC----CCCHHHHHHHH
Confidence 99999876 58999999999874 433 32 6677 56666665554
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-18 Score=174.96 Aligned_cols=172 Identities=17% Similarity=0.206 Sum_probs=112.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS 164 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 164 (820)
|++++|+||||||||||+++|++. .+|++.++|.++... ...++++|.....+.+++.+++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999982 358999998765321 224667776544445678888776543210000
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC--ChHHHHHHHHHH------HHhcCCCEEEEeCCCCCCCHHHHHH
Q 003437 165 ISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV--SGGERRRVSIGI------DIIHKPSLLFLDEPTSGLDSTSAYS 236 (820)
Q Consensus 165 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L--SGGerqRv~ia~------aL~~~P~lLllDEPtsgLD~~~~~~ 236 (820)
...+++.+. .......+ +.+ |+|++|++.++. +++.+|+...+|+ +||+.....
T Consensus 74 ---------~~~ild~~~-~~~~~~~~-----~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 74 ---------NDVVLDYIA-FPDEAEAL-----AQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp ---------CEEEEESCC-CHHHHHHH-----HHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred ---------CcEEEeecc-CHHHHHHH-----HHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 000111110 00000000 124 888888888888 8999999888884 899988888
Q ss_pred HHHHHHHHHhCCcEEEEEEcC-ccHHHHhhcCEEEEEeCCeEEEEcCccch
Q 003437 237 VVEKVKDIARTGSIVLMTIHQ-PSYRIQMLLDRIIVLARGRLVYMGSPVAL 286 (820)
Q Consensus 237 i~~~L~~l~~~g~tvi~~~H~-~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 286 (820)
.+.++.+.+.+.++|.++|+ ++. +.++||+|+ ++|+++..|+++-+
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~~-~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPTN-LNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGGG-HHHHHHHHH--HCGGGSCC------
T ss_pred -HHHHhhcCCCccEEEeCCCCChhh-HHHHHHHHh--hCCcEEEeecCCch
Confidence 88888886668899999998 764 788999998 99999999987644
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-14 Score=145.46 Aligned_cols=154 Identities=18% Similarity=0.145 Sum_probs=100.6
Q ss_pred cceeeee-EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 73 YLLHDIS-GQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 73 ~iL~~vs-~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
+.|+++. +-+++|++++|+||||||||||++.|++ ..+ .+.+ |+..+.. .+..
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~--~~v~-----------------~i~~~~~----~~~~- 60 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG--KKVA-----------------YVDTEGG----FSPE- 60 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC--SEEE-----------------EEESSCC----CCHH-
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC--CcEE-----------------EEECCCC----CCHH-
Confidence 3677776 4799999999999999999999999998 211 1222 3322221 1111
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH--HHHHHHHHHHhcC-CCEEEEeCCCCC
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE--RRRVSIGIDIIHK-PSLLFLDEPTSG 228 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe--rqRv~ia~aL~~~-P~lLllDEPtsg 228 (820)
.+.-... . ..... +++++.+. +. .+|+++ +++++.+++++.+ |+++++||||+.
T Consensus 61 ~~~~~~~-~--~~~~~-------~~~~~~~~--------~~-----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 61 RLVQMAE-T--RGLNP-------EEALSRFI--------LF-----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHH-T--TTCCH-------HHHHHHEE--------EE-----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHH-h--cCCCh-------HHHhhcEE--------EE-----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 1111001 0 01111 11222221 21 245554 5788888999986 999999999999
Q ss_pred CCHH--------HHHHHHHHHHHHHhC-CcEEEEEEcCccH------------HHHhhcCEEEEEeCC
Q 003437 229 LDST--------SAYSVVEKVKDIART-GSIVLMTIHQPSY------------RIQMLLDRIIVLARG 275 (820)
Q Consensus 229 LD~~--------~~~~i~~~L~~l~~~-g~tvi~~~H~~~~------------~i~~~~D~v~lL~~G 275 (820)
+|+. ...++++.|++++++ |.|||+++|.... .+...||.+++|++.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9973 335567778888764 8999999998651 367789999999764
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.3e-14 Score=139.67 Aligned_cols=78 Identities=19% Similarity=0.306 Sum_probs=67.1
Q ss_pred CCCCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEE
Q 003437 196 RRGVSGGERRRVSIGIDIIH----KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIV 271 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL~~----~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l 271 (820)
+..||||||||++||++|+. +|+++||||||+|||+.+...+.+.|+++.+ +.++|+++|+.. +...||+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~--~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDV--MMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHH--HHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHH--HHHhCCEEEE
Confidence 34799999999999999974 4699999999999999999999999999865 468999999964 5678999986
Q ss_pred Ee--CCe
Q 003437 272 LA--RGR 276 (820)
Q Consensus 272 L~--~G~ 276 (820)
+. +|.
T Consensus 139 v~~~~g~ 145 (173)
T 3kta_B 139 VSMRDGV 145 (173)
T ss_dssp EEEETTE
T ss_pred EEecCCE
Confidence 64 553
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-15 Score=169.89 Aligned_cols=164 Identities=15% Similarity=0.195 Sum_probs=111.9
Q ss_pred eeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC---CccccceEEEEccCCCCCCCCCH
Q 003437 75 LHDISGQAIRGEI--MAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT---TSYMKMVSSYVMQDDQLFPMLTV 149 (820)
Q Consensus 75 L~~vs~~i~~Ge~--~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~---~~~~~~~~gyv~Q~~~l~~~lTV 149 (820)
|+++|+++++|++ ++|+||||||||||+|+|+|+.. +|.++. ....++.++|++|++.+++.+||
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----------~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv 99 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----------EGEPATHTQPGVQLQSNTYDLQESNVRLKLTI 99 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-----------------CCSSCEEEEEEEEEEC--CEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----------cCCcCCCCCccceEeeEEEEeecCccccccch
Confidence 9999999999999 99999999999999999999742 222221 11224568999999988888999
Q ss_pred HHHHHHHHHhcCCCCCCHH--------HHHHHHHHHHHHc-CCCc----ccccc----cc--CCCCCCCChHHHHHHHHH
Q 003437 150 FETFMFAAEVRLPPSISRD--------EKKKRVYELLDQL-GLRS----ATHTY----IG--NEGRRGVSGGERRRVSIG 210 (820)
Q Consensus 150 ~e~l~~~~~~~~~~~~~~~--------~~~~~v~~~l~~l-gL~~----~~~~~----ig--~~~~~~LSGGerqRv~ia 210 (820)
.||+.|+.. .... ...+..++.|... ++.. ..|+. +. .+...+|+-.+ +.|+
T Consensus 100 ~D~~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieil 170 (427)
T 2qag_B 100 VSTVGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTM 170 (427)
T ss_dssp EEEECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHH
T ss_pred hhhhhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHH
Confidence 999876532 1111 1234455566654 5432 12222 10 11123577666 7899
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEEcC
Q 003437 211 IDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKD-IARTGSIVLMTIHQ 257 (820)
Q Consensus 211 ~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~-l~~~g~tvi~~~H~ 257 (820)
++|..+++++++|||+..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 171 k~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 171 KKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999999999999999999999987 77789999888764
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-16 Score=158.20 Aligned_cols=140 Identities=15% Similarity=0.051 Sum_probs=91.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVR 160 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~ 160 (820)
+++|++++|+||||||||||+++|+|.. ..|.|.++|.++... ..++.++|++|+.. +.+||.|++.+.+...
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~----~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLP----GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY 79 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCS----SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhcc----CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence 6789999999999999999999999962 369999999765321 11234567777543 3568889887654321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccc--cccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q 003437 161 LPPSISRDEKKKRVYELLDQLGLRSAT--HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVV 238 (820)
Q Consensus 161 ~~~~~~~~~~~~~v~~~l~~lgL~~~~--~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~ 238 (820)
...+. ...++.+++.+++.... +.. +..+|+|++||+.++|++..+|+++ +|+.....+.
T Consensus 80 ~~~~~-----~~~~~~~~~~~~l~~~~~~~~~-----~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 80 AKEGY-----FVILDGVVRPDWLPAFTALARP-----LHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp HHTSC-----EEEECSCCCTTTTHHHHTTCSC-----EEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred hccCC-----eEEEeccCcHHHHHHHHhcCCC-----eEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 00000 00011111111222111 111 2359999999999999999999876 6888777777
Q ss_pred HHHHHHH
Q 003437 239 EKVKDIA 245 (820)
Q Consensus 239 ~~L~~l~ 245 (820)
+.++.+.
T Consensus 142 ~~~~~l~ 148 (191)
T 1zp6_A 142 SQFADLG 148 (191)
T ss_dssp HHTTCCG
T ss_pred HHHhccC
Confidence 7766553
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=6.2e-17 Score=179.72 Aligned_cols=176 Identities=12% Similarity=0.021 Sum_probs=105.5
Q ss_pred ceeeeeEEEeC--CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCc----eEEEEC----CEeCCCccccceEEEEccCCCC
Q 003437 74 LLHDISGQAIR--GEIMAIMGPSGAGKSTFLDALAGRIAQGSLE----GSVRID----GKPVTTSYMKMVSSYVMQDDQL 143 (820)
Q Consensus 74 iL~~vs~~i~~--Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~----G~I~i~----G~~~~~~~~~~~~gyv~Q~~~l 143 (820)
+.+.|++.+.+ |+.++|+||||||||||+|+|+|++.+ .+ |+|.++ |.++ .
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~~~~~-----------------~ 217 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLGGDEQ-----------------A 217 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSSSCTT-----------------S
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcCCCcc-----------------c
Confidence 46789999999 999999999999999999999999853 45 666553 2211 0
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh-cCCCEEEE
Q 003437 144 FPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII-HKPSLLFL 222 (820)
Q Consensus 144 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~-~~P~lLll 222 (820)
++.... +++.+...- .......+.+-+..++ .+..++.+ ..+|+|++||..+++++. .+|+++||
T Consensus 218 ~~~~~~-~~I~~~~q~-------~~~~~~t~~~nl~~~~-~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~lllL 283 (365)
T 1lw7_A 218 MQYSDY-PQMALGHQR-------YIDYAVRHSHKIAFID-TDFITTQA-----FCIQYEGKAHPFLDSMIKEYPFDVTIL 283 (365)
T ss_dssp SCTTTH-HHHHHHHHH-------HHHHHHHHCSSEEEES-SCHHHHHH-----HHHHHHSCCCHHHHHHHHHSCCSEEEE
T ss_pred CChhHH-HHHHHHHHH-------HHHHHHhccCCEEEEe-CCchHHHH-----HHHHHcCCCCHHHHHHHhhcCCCEEEE
Confidence 111122 233332110 0000000000000001 11111111 236677788888888774 69999999
Q ss_pred eC---CC------CCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccch
Q 003437 223 DE---PT------SGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286 (820)
Q Consensus 223 DE---Pt------sgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 286 (820)
|| |+ .++|...+..+.+.|+++.+ .|.+||+++|. + ...+++|++.+|++ ++..++++++
T Consensus 284 dE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~~--~l~~~~~~~~ 353 (365)
T 1lw7_A 284 LKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIEK--VLNEEEISEL 353 (365)
T ss_dssp EECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHHH--HTSCCCCSSC
T ss_pred CCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHHH--HhcccchhHh
Confidence 99 65 58999999999999999865 48899999975 3 35667777766654 3334444443
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.9e-17 Score=177.26 Aligned_cols=163 Identities=13% Similarity=0.089 Sum_probs=107.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC------CCCceEEEECCEeCCCc------------------cccceEEEE---c
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRIAQ------GSLEGSVRIDGKPVTTS------------------YMKMVSSYV---M 138 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~~~------~~~~G~I~i~G~~~~~~------------------~~~~~~gyv---~ 138 (820)
++++|+|+||||||||||.|.|.... .++.|+|.+||.++... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 68999999999999999999997521 24679999999887532 112334566 5
Q ss_pred cCCCCCCCCCHHHHHHHHH--Hh-cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhc
Q 003437 139 QDDQLFPMLTVFETFMFAA--EV-RLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIH 215 (820)
Q Consensus 139 Q~~~l~~~lTV~e~l~~~~--~~-~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~ 215 (820)
|+..+++..+|.|++.++. .+ +.-...+......+++.++..+++.+..+... ++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 7666666677777765431 00 00000000001112223344556655555543 499999999998888989
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcC
Q 003437 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLD 267 (820)
Q Consensus 216 ~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 267 (820)
+|+++ ||| .++.+.|++++ .+.+|++++|++.. +..++|
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~-~~~l~~ 197 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDID-LGLLFN 197 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCC-GGGGSC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCC-HHHHhC
Confidence 99987 998 78888888875 58999999998653 444443
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-14 Score=159.85 Aligned_cols=131 Identities=21% Similarity=0.332 Sum_probs=97.0
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHH
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETF 153 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l 153 (820)
+|++++ +++|++++|+||||||||||+++|+|++.+. .+|+|.+.|.++.. ..+..++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e~-~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEY-VFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCCS-CCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHhh-hhccCceEEEeee------------
Confidence 566666 7899999999999999999999999987431 16999877766542 2345567888741
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 003437 154 MFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTS 233 (820)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~ 233 (820)
+|++. ..+ +.+|+++|..+|++|++|||+ |..+
T Consensus 191 ---------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 22211 124 569999999999999999999 7766
Q ss_pred HHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEe
Q 003437 234 AYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 234 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~ 273 (820)
... .++. +..|.+|+.++|+.+ +...+||++.|.
T Consensus 224 ~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 443 3443 356899999999976 567788887663
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-14 Score=157.88 Aligned_cols=137 Identities=13% Similarity=0.152 Sum_probs=100.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC-CCccccceEEEEc-cCCCCCCCCCHHH
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV-TTSYMKMVSSYVM-QDDQLFPMLTVFE 151 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~-~~~~~~~~~gyv~-Q~~~l~~~lTV~e 151 (820)
+++++|+.+++|++++|+||||||||||+|+|+|++++ .+|.|+++|..- .....++.++|++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 34999999999999999999999999999999998854 589999998532 1122456788988 54421
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDS 231 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~ 231 (820)
+++++..+|..|+.++..+|+.+++||+..
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 011222356677777778899999999986
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCC
Q 003437 232 TSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARG 275 (820)
Q Consensus 232 ~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G 275 (820)
.++.+.|+.+.....|++.++|..+ ....+||+..|..|
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 3456677777655568899999976 46678998888765
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.9e-16 Score=164.44 Aligned_cols=148 Identities=19% Similarity=0.255 Sum_probs=100.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH---cCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALA---GRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVR 160 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~---G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~ 160 (820)
++++++|+||||||||||+++|+ |+.. +..|+|.++|.+... .....+.+++|+..+++..++.+++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999999999 9764 457898887765322 12233455678878888889999998754210
Q ss_pred CC-----CCCCHHHHHHHHHHHHH--HcC------------CCccccccccCCCCCCCChHHHHHHHHHHHH-hcCCCEE
Q 003437 161 LP-----PSISRDEKKKRVYELLD--QLG------------LRSATHTYIGNEGRRGVSGGERRRVSIGIDI-IHKPSLL 220 (820)
Q Consensus 161 ~~-----~~~~~~~~~~~v~~~l~--~lg------------L~~~~~~~ig~~~~~~LSGGerqRv~ia~aL-~~~P~lL 220 (820)
.. .+.+... ..++.+.+ .++ +....++.+ ..||| |+ ++| +.+|+++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~-----~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWI-----HPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEE-----ETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCC-----cCCCC----Cc---cccccCCCccc
Confidence 00 0111111 12222221 122 222223333 36999 66 677 9999999
Q ss_pred EEe----CCCCCCCHHHHHHHHHHHHHHHhCC
Q 003437 221 FLD----EPTSGLDSTSAYSVVEKVKDIARTG 248 (820)
Q Consensus 221 llD----EPtsgLD~~~~~~i~~~L~~l~~~g 248 (820)
+|| |||++||..+...+.+.|+++.+++
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 999 9999999999999999999987653
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-13 Score=150.68 Aligned_cols=123 Identities=20% Similarity=0.157 Sum_probs=89.1
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEEC-CEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRID-GKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~-G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
-+++++.. .+|++++|+||||||||||+|+|+|... .+.+|+|.++ |..... ..+..+++++|+..++++.+|+|+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~-~~~~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQN-EILTNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSS-CCCCC--------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccc-ccccCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHHh
Confidence 35666654 4899999999999999999999999874 1457999987 765432 234568999999989988899884
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHH
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDI 213 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL 213 (820)
. + ..+++++..+.+.++++.+|+.+..+.... ++| ||+||++||+++
T Consensus 282 ---~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~-----~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 ---G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKHD-----ADP-GCAIREAVENGA 328 (358)
T ss_dssp ---C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSS-----SCT-TCHHHHHHHHTS
T ss_pred ---h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCcc-----cCC-HHHHHHHHHhcC
Confidence 1 1 135666777788999999999888777764 699 999999999864
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.6e-13 Score=138.03 Aligned_cols=158 Identities=18% Similarity=0.225 Sum_probs=89.0
Q ss_pred ceeeee-EEEeCCcEEEEEcCCCCcHHHHHHHHHcC--CCCC---CCceEEEECCEeCCCccccceEEEEccCCCCCCCC
Q 003437 74 LLHDIS-GQAIRGEIMAIMGPSGAGKSTFLDALAGR--IAQG---SLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPML 147 (820)
Q Consensus 74 iL~~vs-~~i~~Ge~~allGpnGsGKSTLl~~L~G~--~~~~---~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~l 147 (820)
.|+.+- +-+++|++++|+||||||||||++.|++. ..+. ...|.+++++.+..
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~--------------------- 70 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF--------------------- 70 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---------------------
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc---------------------
Confidence 344443 57899999999999999999999999994 3210 13456666554310
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH-HHHHHHHh--cCCCEEEEeC
Q 003437 148 TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR-VSIGIDII--HKPSLLFLDE 224 (820)
Q Consensus 148 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR-v~ia~aL~--~~P~lLllDE 224 (820)
...+.......+ +...+ ++++.+. +. ...+..+... +.-+.+++ .+|+++++||
T Consensus 71 ~~~~~~~~~~~~----g~~~~-------~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~ 127 (243)
T 1n0w_A 71 RPERLLAVAERY----GLSGS-------DVLDNVA--------YA----RAFNTDHQTQLLYQASAMMVESRYALLIVDS 127 (243)
T ss_dssp CHHHHHHHHHHT----TCCHH-------HHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEET
T ss_pred CHHHHHHHHHHc----CCCHH-------HHhhCeE--------EE----ecCCHHHHHHHHHHHHHHHhcCCceEEEEeC
Confidence 111100010011 11111 1122111 10 1245554332 23333343 5899999999
Q ss_pred CCCCCCHH-------H-----HHHHHHHHHHHHhC-CcEEEEEEcCccHH------------------HHhhcCEEEEEe
Q 003437 225 PTSGLDST-------S-----AYSVVEKVKDIART-GSIVLMTIHQPSYR------------------IQMLLDRIIVLA 273 (820)
Q Consensus 225 PtsgLD~~-------~-----~~~i~~~L~~l~~~-g~tvi~~~H~~~~~------------------i~~~~D~v~lL~ 273 (820)
|++.+|+. . ..+++..|++++++ |.|||+++|..... +..+||.+++|+
T Consensus 128 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~ 207 (243)
T 1n0w_A 128 ATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLR 207 (243)
T ss_dssp SSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEE
T ss_pred chHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEE
Confidence 99999985 3 45667777777654 99999999965421 222789999998
Q ss_pred CC
Q 003437 274 RG 275 (820)
Q Consensus 274 ~G 275 (820)
+|
T Consensus 208 ~~ 209 (243)
T 1n0w_A 208 KG 209 (243)
T ss_dssp EC
T ss_pred Ec
Confidence 65
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-12 Score=143.77 Aligned_cols=76 Identities=25% Similarity=0.369 Sum_probs=67.3
Q ss_pred CCCCChHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCE
Q 003437 196 RRGVSGGERRRV------SIGIDIIHK-PSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 196 ~~~LSGGerqRv------~ia~aL~~~-P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 268 (820)
+..||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++.+ +.+||++||++. +..+||+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~--~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRE--LEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGG--GGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHH--HHhhCCE
Confidence 457999999988 567888999 999999999999999999999999999743 568999999985 5688999
Q ss_pred EEEEeC
Q 003437 269 IIVLAR 274 (820)
Q Consensus 269 v~lL~~ 274 (820)
+++|++
T Consensus 355 ~~~l~k 360 (371)
T 3auy_A 355 IINVKK 360 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999973
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.1e-15 Score=146.81 Aligned_cols=139 Identities=17% Similarity=0.207 Sum_probs=89.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceEEEECCEeCCC------cccc-ceEE----EEccCCCCCCCCCHHHHH
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRIAQG-SLEGSVRIDGKPVTT------SYMK-MVSS----YVMQDDQLFPMLTVFETF 153 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~~~~-~~~G~I~i~G~~~~~------~~~~-~~~g----yv~Q~~~l~~~lTV~e~l 153 (820)
++++|+|+||||||||+++|+|++.+. ...|.|.++|.++.. ..++ +.+| +++|+..++ +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 589999999999999999999997542 126999999987432 1233 3455 788877654 110
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHH-cCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEE-------EEeCC
Q 003437 154 MFAAEVRLPPSISRDEKKKRVYELLDQ-LGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLL-------FLDEP 225 (820)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lL-------llDEP 225 (820)
... +....++++++. +. ..|+.+++ +||||||||++|||+++.+|++. .-|.|
T Consensus 77 -----------~~~-~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 -----------VSE-EEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp -----------CCH-HHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred -----------CCh-hhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 011 111245556665 43 46888886 59999999999999999999763 33555
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCCc
Q 003437 226 TSG---LDSTSAYSVVEKVKDIARTGS 249 (820)
Q Consensus 226 tsg---LD~~~~~~i~~~L~~l~~~g~ 249 (820)
..+ +|......+.+.+.+...+|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 345556788888877666654
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.35 E-value=3e-14 Score=139.40 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=65.9
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
+.+++++|+++++|++++|+||||||||||+|+|+|++ + .+|+|.++|.++....... .|++|+..++ .+||.|
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHH
Confidence 45899999999999999999999999999999999988 4 5799999998874322111 2799998888 899999
Q ss_pred HHHH
Q 003437 152 TFMF 155 (820)
Q Consensus 152 ~l~~ 155 (820)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9965
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3.6e-14 Score=161.12 Aligned_cols=154 Identities=14% Similarity=0.160 Sum_probs=106.4
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-------c--ccceEEEEccCCCCCC
Q 003437 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS-------Y--MKMVSSYVMQDDQLFP 145 (820)
Q Consensus 75 L~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~-------~--~~~~~gyv~Q~~~l~~ 145 (820)
-+++|+++++|++++|+|+||||||||+++|+|++.+ .+|+|.++|.+.... . .++.++|++|+..+++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 4689999999999999999999999999999998753 479999988776431 1 2456899999988888
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh-cCC-CEEEEe
Q 003437 146 MLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII-HKP-SLLFLD 223 (820)
Q Consensus 146 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~-~~P-~lLllD 223 (820)
.+||++++.++..-. .+ .+ +++..|+.+.... +-.--+|++.+++++. ..| .+||..
T Consensus 361 ~~tV~e~l~~a~~~~----~D------vV--LIDTaGrl~~~~~---------lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKARN----ID------VL--IADTAGRLQNKSH---------LMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHTT----CS------EE--EECCCCSCCCHHH---------HHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhcC----CC------EE--EEeCCCccchhhh---------HHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 889999998875311 10 00 1233333222111 1112357888888764 457 466666
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcC
Q 003437 224 EPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQ 257 (820)
Q Consensus 224 EPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~ 257 (820)
++|+|.|.. +.++.+.+ -|.|.|++||-
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 688886543 34555554 48899999994
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.6e-13 Score=146.23 Aligned_cols=143 Identities=13% Similarity=0.115 Sum_probs=100.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCcc-------ccc--eEEEEccCCCCCCCCCHHHHH
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY-------MKM--VSSYVMQDDQLFPMLTVFETF 153 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~-------~~~--~~gyv~Q~~~l~~~lTV~e~l 153 (820)
++|++++|+||||||||||++.|+|++.+ .+|+|.++|.++.... +.+ .+.|++|+..+.|.++|+|++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 68999999999999999999999998753 5799999999875311 122 245999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 003437 154 MFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTS 233 (820)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~ 233 (820)
.++...... . -+++..|+.+..+..+ ++.-.+++++..++.+++||.+|.
T Consensus 205 ~~~~~~~~d----------~--vliDtaG~~~~~~~l~------------~eL~~i~ral~~de~llvLDa~t~------ 254 (328)
T 3e70_C 205 QHAKARGID----------V--VLIDTAGRSETNRNLM------------DEMKKIARVTKPNLVIFVGDALAG------ 254 (328)
T ss_dssp HHHHHHTCS----------E--EEEEECCSCCTTTCHH------------HHHHHHHHHHCCSEEEEEEEGGGT------
T ss_pred HHHHhccch----------h--hHHhhccchhHHHHHH------------HHHHHHHHHhcCCCCEEEEecHHH------
Confidence 876431100 0 0123334433222222 222348889988888888885554
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEEcCc
Q 003437 234 AYSVVEKVKDIAR-TGSIVLMTIHQP 258 (820)
Q Consensus 234 ~~~i~~~L~~l~~-~g~tvi~~~H~~ 258 (820)
.++++.++.+.+ .+.|+|++||..
T Consensus 255 -~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 255 -NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp -THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred -HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 466667777764 589999999965
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=8.8e-15 Score=160.65 Aligned_cols=174 Identities=21% Similarity=0.243 Sum_probs=115.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+.+|+++.|.. +.+|+++|+++.+|++++|+||||||||||+++|+|++.+ .+|+|.+.|.++..
T Consensus 30 ie~~~~~~~~~~------------~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~--~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 30 AESRRADHRAAV------------RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA--AGHKVAVLAVDPSS 95 (337)
T ss_dssp HTCSSHHHHHHH------------HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECGGG
T ss_pred HeeCCcccccCh------------HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh--CCCEEEEEEEcCcc
Confidence 566666666532 3489999999999999999999999999999999998743 57999999988743
Q ss_pred c-------cccceEEEEccCCCCCCCC------------CHHHHHHHHH-----------------------------Hh
Q 003437 128 S-------YMKMVSSYVMQDDQLFPML------------TVFETFMFAA-----------------------------EV 159 (820)
Q Consensus 128 ~-------~~~~~~gyv~Q~~~l~~~l------------TV~e~l~~~~-----------------------------~~ 159 (820)
. ..++.++|++|++.+++.. ++.|.+...- .+
T Consensus 96 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v 175 (337)
T 2qm8_A 96 TRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVL 175 (337)
T ss_dssp GSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEE
T ss_pred cccccchHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEE
Confidence 1 2345678999998776532 1233321110 00
Q ss_pred cCCCCCCHHHH---HHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhc------CCCEEEEeCCCCCCC
Q 003437 160 RLPPSISRDEK---KKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIH------KPSLLFLDEPTSGLD 230 (820)
Q Consensus 160 ~~~~~~~~~~~---~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~------~P~lLllDEPtsgLD 230 (820)
..+ . ..++. .+.+.++...+.+ +..|.. ....+|+|++|++..+++++. +|++++ ||++|
T Consensus 176 ~d~-~-~~~~~~~i~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~ 244 (337)
T 2qm8_A 176 MLP-G-AGDELQGIKKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLH 244 (337)
T ss_dssp ECS-C-C------CCTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTT
T ss_pred EcC-C-CcccHHHHHHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCC
Confidence 000 0 00110 0011122222222 122211 113589999999999999987 688887 99999
Q ss_pred HHHHHHHHHHHHHHHh
Q 003437 231 STSAYSVVEKVKDIAR 246 (820)
Q Consensus 231 ~~~~~~i~~~L~~l~~ 246 (820)
.....++++.|.++..
T Consensus 245 g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 245 GKGLDSLWSRIEDHRS 260 (337)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988753
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.2e-12 Score=123.70 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=37.5
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcE-EEEEEcCcc
Q 003437 214 IHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSI-VLMTIHQPS 259 (820)
Q Consensus 214 ~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~t-vi~~~H~~~ 259 (820)
+.+|++|++|||++ +|...+..+.+++..+.++|++ +|+++|.+.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 45799999999998 6665688999999998888888 888888653
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-13 Score=155.41 Aligned_cols=169 Identities=17% Similarity=0.154 Sum_probs=98.9
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHH
Q 003437 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFM 154 (820)
Q Consensus 75 L~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~ 154 (820)
-++++++++.|+.++|+|+|||||||||++|+|..+ .+.+.+.+. ....+++|.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ftT--l~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFTT--LSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTCS--SCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccce--ecceeeEEEecCc--ceEEEEeccc
Confidence 479999999999999999999999999999999742 233333321 1223455554430 0001111000
Q ss_pred HHHHhcCCCCCCHHHH--HHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 003437 155 FAAEVRLPPSISRDEK--KKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST 232 (820)
Q Consensus 155 ~~~~~~~~~~~~~~~~--~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~ 232 (820)
+.........+..... .++++.++..+++. +..+ ..||+|++||+.++++|+.+|.+|++ +.+|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~~-----~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEPL-----KTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCHH-----HHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCCH-----HHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 0000000001111110 11223334444543 2223 36999999999999999999999999 999998
Q ss_pred HHHHHHHHHHHHH-hCCcEEEEEEcCccHHHHhhcCE
Q 003437 233 SAYSVVEKVKDIA-RTGSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 233 ~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~D~ 268 (820)
.+ ..++.+++.. +.|.+++.+|......+.++++.
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 77 5555555544 45777776664433335555543
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.7e-13 Score=144.69 Aligned_cols=121 Identities=19% Similarity=0.216 Sum_probs=83.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEE---CCEeCCCcc--cc-ceEEEEccCCCCC-----CCCCHHH
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRI---DGKPVTTSY--MK-MVSSYVMQDDQLF-----PMLTVFE 151 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i---~G~~~~~~~--~~-~~~gyv~Q~~~l~-----~~lTV~e 151 (820)
.+|++++|+||||||||||+|+|+ +.. +.+|+|.+ +|++++... .+ +.+|||+|++.+. +.+|+ |
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 469999999999999999999999 764 45799999 998876421 11 2479999998543 78899 8
Q ss_pred HH--HHH----HHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHHHHHHHHHH
Q 003437 152 TF--MFA----AEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRGVSGGERRRVSIGID 212 (820)
Q Consensus 152 ~l--~~~----~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSGGerqRv~ia~a 212 (820)
++ .|+ ..++........+...++.++++.++|.+ ..+.++. .|||.++|++.|||+
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~-----~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLK-----IIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHH-----HTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH-----HHHHHHHHHHHHhcc
Confidence 88 454 11122111122234467899999999986 6676664 599988999999863
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.1e-13 Score=145.25 Aligned_cols=134 Identities=14% Similarity=0.093 Sum_probs=87.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHH---h
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAE---V 159 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~---~ 159 (820)
.++.+++|.|+||||||||++.|++++.+ .| . .++.+.+|+||+.+++. ++++|+.+... +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C------CCceEEEeccccccCCh-HHHHHHhccccccch
Confidence 35889999999999999999999998732 12 0 13445667999998875 88899887521 0
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC--c--cccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 003437 160 RLPPSISRDEKKKRVYELLDQLGLR--S--ATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTS 233 (820)
Q Consensus 160 ~~~~~~~~~~~~~~v~~~l~~lgL~--~--~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~ 233 (820)
....+.+.....+...+.++.+.-. . .....+. .+...+||||+||+++|++...+|+|||+|||+++||+..
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 0000111111234455666666432 0 0111111 2335799999999998733322999999999999999853
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=6.1e-12 Score=124.84 Aligned_cols=47 Identities=13% Similarity=0.040 Sum_probs=42.4
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 214 IHKPSLLFLDEPTS-GLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 214 ~~~P~lLllDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
+.+|++|+||||++ ++|+.....+.++|....++|+++|++||.+..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 45999999999995 999999999999999988889999999998754
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.21 E-value=9.2e-12 Score=136.61 Aligned_cols=137 Identities=17% Similarity=0.151 Sum_probs=74.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-CCCCCCCceEEEECCEeCCCc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAG-RIAQGSLEGSVRIDGKPVTTS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPS 164 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G-~~~~~~~~G~I~i~G~~~~~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 164 (820)
.+.|.||||+|||||+++|++ +.. +..|+|.++|.+.... ..+..+++++|.+.+.-..+ + .. .
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~---~ 103 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------MG---N 103 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHh--h-------cC---C
Confidence 389999999999999999999 553 3579999999876422 22345678888764321111 0 00 0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 003437 165 ISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI 244 (820)
Q Consensus 165 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l 244 (820)
......++.++++.+..++.+ .+ .||| +..+|+++|+|||++ ||..++..+.+.|.+.
T Consensus 104 ~~~~~~~~~i~~~~~~~~~~~----~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 104 NDRIVIQELLKEVAQMEQVDF----QD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp CCHHHHHHHHHHHTTTTC---------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHhccccc----cc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 111112222332222222221 11 3566 788999999999999 9999999999999886
Q ss_pred HhCCcEEEEEEcCccH
Q 003437 245 ARTGSIVLMTIHQPSY 260 (820)
Q Consensus 245 ~~~g~tvi~~~H~~~~ 260 (820)
. .+.++|+++|++..
T Consensus 162 ~-~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 162 S-KNIRLIMVCDSMSP 176 (354)
T ss_dssp T-TTEEEEEEESCSCS
T ss_pred c-CCCEEEEEeCCHHH
Confidence 4 46899999999863
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-14 Score=163.11 Aligned_cols=135 Identities=15% Similarity=0.118 Sum_probs=91.6
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-------cccceEEEEc-------
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS-------YMKMVSSYVM------- 138 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~-------~~~~~~gyv~------- 138 (820)
.+|+++ + .++|++++|+|||||||||||++|+|++.+ .+|+|.+.|.++... ..++.+++.+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~ 232 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAI 232 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHH
Confidence 367777 4 379999999999999999999999998753 479999998876421 1222344544
Q ss_pred --cCCCC--CCC----CCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHH
Q 003437 139 --QDDQL--FPM----LTVFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSI 209 (820)
Q Consensus 139 --Q~~~l--~~~----lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~i 209 (820)
|++.. ++. .|+.+++.++..-+.. ..+......+ +.+.|..+|+.+.. .. ..|||||+|| |
T Consensus 233 Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~-----~~LSgg~~QR--L 302 (418)
T 1p9r_A 233 LRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--IS-----SSLLGVLAQR--L 302 (418)
T ss_dssp GGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HH-----HHEEEEEEEE--E
T ss_pred hccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HH-----HHHHHHHHHH--h
Confidence 88754 344 5889998876421100 0000011112 22346778887643 23 3699999999 9
Q ss_pred HHHHhcCCCEEE
Q 003437 210 GIDIIHKPSLLF 221 (820)
Q Consensus 210 a~aL~~~P~lLl 221 (820)
|++|+.+|+++.
T Consensus 303 araL~~~p~~~~ 314 (418)
T 1p9r_A 303 VRTLCPDCKEPY 314 (418)
T ss_dssp EEEECTTTCEEE
T ss_pred hhhhcCCCCccC
Confidence 999999999875
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-10 Score=130.93 Aligned_cols=159 Identities=15% Similarity=0.213 Sum_probs=89.9
Q ss_pred ceeee-eEEEeCCcEEEEEcCCCCcHHHHHHHH--HcCCCCC---CCceEEEECCEeCCCccccceEEEEccCCCCCCCC
Q 003437 74 LLHDI-SGQAIRGEIMAIMGPSGAGKSTFLDAL--AGRIAQG---SLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPML 147 (820)
Q Consensus 74 iL~~v-s~~i~~Ge~~allGpnGsGKSTLl~~L--~G~~~~~---~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~l 147 (820)
-|+.+ .+-|++|++++|+||||||||||++.| .+..++. ...+.|+++++...
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~--------------------- 224 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF--------------------- 224 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---------------------
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCcc---------------------
Confidence 34443 367999999999999999999999954 4554321 12345666654311
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh-HHHHHHHHHHHHh--cCCCEEEEeC
Q 003437 148 TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG-GERRRVSIGIDII--HKPSLLFLDE 224 (820)
Q Consensus 148 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSG-GerqRv~ia~aL~--~~P~lLllDE 224 (820)
..........++ ++..+ .+++.+ .+.. ..++ .+.+.+.-+..++ .+|+++++||
T Consensus 225 ~~~rl~~~a~~~----gl~~~-------~vleni--------~~~~----~~~~~~~~~~l~~~~~~l~~~~~~llVIDs 281 (400)
T 3lda_A 225 RPVRLVSIAQRF----GLDPD-------DALNNV--------AYAR----AYNADHQLRLLDAAAQMMSESRFSLIVVDS 281 (400)
T ss_dssp CHHHHHHHHHHT----TCCHH-------HHHHTE--------EEEE----CCSHHHHHHHHHHHHHHHHHSCEEEEEEET
T ss_pred CHHHHHHHHHHc----CCChH-------hHhhcE--------EEec----cCChHHHHHHHHHHHHHHHhcCCceEEecc
Confidence 000000000000 01111 111111 1111 1222 2233333333333 4799999999
Q ss_pred CCCCCCHHHH------------HHHHHHHHHHHhC-CcEEEEEEcCcc------------------HHHHhhcCEEEEEe
Q 003437 225 PTSGLDSTSA------------YSVVEKVKDIART-GSIVLMTIHQPS------------------YRIQMLLDRIIVLA 273 (820)
Q Consensus 225 PtsgLD~~~~------------~~i~~~L~~l~~~-g~tvi~~~H~~~------------------~~i~~~~D~v~lL~ 273 (820)
|++.+|.... .++++.|++++++ |.|||+++|... ..+...+|.++.|+
T Consensus 282 ~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~ 361 (400)
T 3lda_A 282 VMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFK 361 (400)
T ss_dssp GGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEE
T ss_pred hhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEE
Confidence 9999997543 6788899999865 999999999821 12456688888887
Q ss_pred CCe
Q 003437 274 RGR 276 (820)
Q Consensus 274 ~G~ 276 (820)
+++
T Consensus 362 ~~~ 364 (400)
T 3lda_A 362 KGK 364 (400)
T ss_dssp ECS
T ss_pred ecC
Confidence 653
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.17 E-value=5e-14 Score=162.57 Aligned_cols=177 Identities=14% Similarity=0.056 Sum_probs=108.2
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCC---------
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQ--------- 142 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~--------- 142 (820)
..+++++++.+++|+.++|+|||||||||||++|+|+++ +.+|.|+++|.+--.......++++.|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~--~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 357899999999999999999999999999999999985 457999999865211111234455554432
Q ss_pred -------------CCCCCCHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHHcCC-----Cc----cccccccCCCCCCC
Q 003437 143 -------------LFPMLTVFETFMFAAEVRLPPS-ISRDEKKKRVYELLDQLGL-----RS----ATHTYIGNEGRRGV 199 (820)
Q Consensus 143 -------------l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL-----~~----~~~~~ig~~~~~~L 199 (820)
++..++..|++.+......... ++. .....+.++++++.. .. ..+..+. ....+
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT-~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~--~~~~~ 401 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYST-LHAGDINQMVYRLESEPLKVPRSMLQFLDIALV--QTMWV 401 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEE-EECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEE--EEEEE
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccc-cccCCHHHHHHHHHhcccccHHHHHhhccEEEE--EEEEE
Confidence 2234455554443322221100 000 000112333333322 21 1111000 11347
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE--EEcCccHHHHhhc
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLM--TIHQPSYRIQMLL 266 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~--~~H~~~~~i~~~~ 266 (820)
||||+||++++. + | |+|||+.....+++.|.++.++|.|+++ ++|+.+. +...|
T Consensus 402 s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~e-i~~~~ 457 (511)
T 2oap_1 402 RGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEK-MADFL 457 (511)
T ss_dssp SSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHH-HHHHH
T ss_pred eCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHH-HHHHc
Confidence 999999877641 2 7 9999998887777777777667888875 8898864 55555
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.6e-13 Score=136.52 Aligned_cols=164 Identities=18% Similarity=0.165 Sum_probs=87.9
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcC
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRL 161 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~ 161 (820)
.++|++++|+||||||||||+++|+|++.+. | ..+++|++++..++. +..+++........
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~---g---------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ---G---------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT---T---------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---C---------------CceEEEecCCCcCCH-HHHHHhcccccCCC
Confidence 4689999999999999999999999987431 2 123444444433321 11111100000000
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHH-HHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 003437 162 PPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIG-IDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240 (820)
Q Consensus 162 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia-~aL~~~P~lLllDEPtsgLD~~~~~~i~~~ 240 (820)
+..... ....+.+..+...+..+..+.+.. ..+|+||+||++++ ++++.++.++++|||.-
T Consensus 80 ~~~~~~----~~~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~------------- 141 (208)
T 3c8u_A 80 PETFDF----EGFQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW------------- 141 (208)
T ss_dssp GGGBCH----HHHHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-------------
T ss_pred CchhhH----HHHHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECCceeccCCchh-------------
Confidence 000111 122223333221222222233222 25899999999987 77788888877888741
Q ss_pred HHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhhhh
Q 003437 241 VKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHL 290 (820)
Q Consensus 241 L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f 290 (820)
..+.+.--.+|++.+..+..+.+.+.|. +..|+ +.+++....
T Consensus 142 -~~l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~ 183 (208)
T 3c8u_A 142 -RDLTAIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARA 183 (208)
T ss_dssp -GGGGGTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHH
T ss_pred -HHHHHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHH
Confidence 1112222367777777765566666662 34454 455555443
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-13 Score=153.23 Aligned_cols=170 Identities=16% Similarity=0.136 Sum_probs=118.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCC----------CCCCceEEEECCEeCCCc----cccceE---EEEccCCCC
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIA----------QGSLEGSVRIDGKPVTTS----YMKMVS---SYVMQDDQL 143 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~~----------~~~~~G~I~i~G~~~~~~----~~~~~~---gyv~Q~~~l 143 (820)
.+.+|+.++|+|+||||||||+|+|+|... ..+..|.|.++|..+... ..++.+ .++.+.+-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 446899999999999999999999999321 135789999998543210 112222 467777777
Q ss_pred CCCCCHHHHH--HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCC--CE
Q 003437 144 FPMLTVFETF--MFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKP--SL 219 (820)
Q Consensus 144 ~~~lTV~e~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P--~l 219 (820)
.+..+..|+| .|...++. ++.++..++..+ +.. +..+||+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~~-----i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DAE-----IIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TTC-----SSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cce-----eeeecccc------------Ccchhh
Confidence 7777776655 44433331 111222222221 111 22356653 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEEcCccHHHHhhcCEEE-EEeCC-eEEEEcCcc
Q 003437 220 LFLDEPTSGLDSTSAYSVVEKVKDI-ARTGSIVLMTIHQPSYRIQMLLDRII-VLARG-RLVYMGSPV 284 (820)
Q Consensus 220 LllDEPtsgLD~~~~~~i~~~L~~l-~~~g~tvi~~~H~~~~~i~~~~D~v~-lL~~G-~iv~~G~~~ 284 (820)
+++|||+.++|+......++.++++ ++.|.|++ +|... .+.++||++. +|.+| ++++.|+..
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCCC
Confidence 9999999999999999999999998 76777764 99886 4788999999 99999 888777654
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.2e-14 Score=145.39 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=42.3
Q ss_pred HHH-HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 209 IGI-DIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 209 ia~-aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
.++ +++.+|++++|||+|+++|..+...|.+.|.++.++ +...|.+ ..||+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 345 677788888889999999999999999999887653 2233521 45899887753
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-12 Score=143.21 Aligned_cols=166 Identities=19% Similarity=0.165 Sum_probs=106.2
Q ss_pred cceeeeeEEEeCC-------cEEEEEcCCCCcHHHHHHHHHcCCCC--CCCceEEEECCEeCCC---ccccceEEEEccC
Q 003437 73 YLLHDISGQAIRG-------EIMAIMGPSGAGKSTFLDALAGRIAQ--GSLEGSVRIDGKPVTT---SYMKMVSSYVMQD 140 (820)
Q Consensus 73 ~iL~~vs~~i~~G-------e~~allGpnGsGKSTLl~~L~G~~~~--~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~ 140 (820)
.+++++++.+++| +.++|+||||+|||||+++|+|.+.. .+++|.+..++.++.. ...+..+.|++|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 4889999999877 89999999999999999999997621 1245666665554421 1124568899998
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCE
Q 003437 141 DQLFPMLTVFETFMFAAEVRLPPS-ISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSL 219 (820)
Q Consensus 141 ~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~l 219 (820)
+.+.+ ++.|+|..........- .......+.+...++.++|.. +++.++ .||+|+|||+.++
T Consensus 112 ~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~-----~Ls~~l~sR~~l~--------- 174 (334)
T 1in4_A 112 HRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSG-----LLSSPLRSRFGII--------- 174 (334)
T ss_dssp GGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGG-----GSCHHHHTTCSEE---------
T ss_pred hhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcc-----cCCHHHHHhcCce---------
Confidence 87765 78888865443221000 011222344555666666654 455554 6999999998654
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCE
Q 003437 220 LFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 220 LllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~ 268 (820)
.+||+.+..++.++|++.++. + +.|+++ .+..++++
T Consensus 175 -------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~-~~~~ia~~ 211 (334)
T 1in4_A 175 -------LELDFYTVKELKEIIKRAASLMD-----VEIEDA-AAEMIAKR 211 (334)
T ss_dssp -------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHH-HHHHHHHT
T ss_pred -------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHH-HHHHHHHh
Confidence 788999999999999998753 4 246654 35555553
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.4e-11 Score=133.07 Aligned_cols=103 Identities=23% Similarity=0.343 Sum_probs=68.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEE---CCEeCCCcc--c-cceEEEEccCCC------------
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRI---DGKPVTTSY--M-KMVSSYVMQDDQ------------ 142 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i---~G~~~~~~~--~-~~~~gyv~Q~~~------------ 142 (820)
.+.+|++++|+||||||||||||+|+|+.. +.+|+|.+ +|++++... . .+.+|||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 345799999999999999999999999885 45799999 898875421 1 134789999874
Q ss_pred ----CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccc
Q 003437 143 ----LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLR-SATHTYIG 192 (820)
Q Consensus 143 ----l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig 192 (820)
++|.+|+ ||+.|.. +. ...+...++.++|+.+||+ +..+.++.
T Consensus 243 ~~~~l~~~~~~-~n~~~~~-~~-----~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSD-CN-----HVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTT-CC-----SSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCC-Cc-----CCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 5889999 9988752 11 1123346789999999995 55666553
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-13 Score=147.24 Aligned_cols=128 Identities=16% Similarity=0.254 Sum_probs=89.6
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCcc---ccceEEEEccCC-CCCCCC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY---MKMVSSYVMQDD-QLFPML 147 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~---~~~~~gyv~Q~~-~l~~~l 147 (820)
..+++++++.+++| ++|+||||||||||+|+|+|... + |.|.++|.++.... ..+.+++++|+. ...|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~--~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG--L--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT--C--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC--C--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 45899999999999 99999999999999999999873 2 89999998774321 233467788764 455666
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 003437 148 TVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTS 227 (820)
Q Consensus 148 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPts 227 (820)
++.|++......+ .. .... .+....+..+. .|||||+||+.|++++..+|++| ||++.
T Consensus 107 ~~~Deid~~~~~r-------~~--~~~~------~~~~~~~~~l~-----~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 107 IFFDEVDALCPRR-------SD--RETG------ASVRVVNQLLT-----EMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHHHH-----HHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred Eeeehhhhhhccc-------CC--Ccch------HHHHHHHHHHH-----hhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 6667665432111 00 0000 12233344443 59999999999999999999975 98864
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.98 E-value=4.4e-11 Score=129.10 Aligned_cols=117 Identities=17% Similarity=0.246 Sum_probs=67.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEE---CCEeCCCcc-ccce-EEEEccCCCCCC----CCCHHH
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRI---DGKPVTTSY-MKMV-SSYVMQDDQLFP----MLTVFE 151 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i---~G~~~~~~~-~~~~-~gyv~Q~~~l~~----~lTV~e 151 (820)
++.+|++++|+||||+|||||+|+|+|... +.+|+|.+ +|+.++... ..+. .||++|.+.+.+ .+|+ |
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence 456899999999999999999999999874 45799999 888765321 1112 689999987654 6899 8
Q ss_pred HHH--HHH------HhcCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCChHHHHH
Q 003437 152 TFM--FAA------EVRLPPSISRDEKKKRVYELLDQLGLRSAT-HTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 152 ~l~--~~~------~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~ig~~~~~~LSGGerqR 206 (820)
++. |.. .|+........+....+.++++.++|.+.+ +.+. .++.|++||
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~------~lls~~~~~ 303 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYV------EFMTEIKDR 303 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH------HHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHH------HHHHHHhhc
Confidence 883 331 112111112223345789999999998643 3333 377787763
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-11 Score=133.21 Aligned_cols=98 Identities=14% Similarity=0.143 Sum_probs=77.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEE-------------------eCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQA-------------------IRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
.|+++||++.|. ++++++++.+ .+|++++|+||||||||||+++|+|
T Consensus 37 ~i~~~~v~~~y~--------------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 37 DLSLEEVAEIYL--------------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp TCCHHHHHHTHH--------------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccchHhHHHHHH--------------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 388888888772 3788888887 8999999999999999999999999
Q ss_pred CCCCCCCceEEEE---CCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 003437 108 RIAQGSLEGSVRI---DGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVR 160 (820)
Q Consensus 108 ~~~~~~~~G~I~i---~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~ 160 (820)
++...+.+|+|.+ ||...... .++.++++ |+..+++.+|+.+++.+...++
T Consensus 103 ~l~~~~~~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 103 LLSRWPEHRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHTTSTTCCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHhhCCCCCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 8741145799999 88775422 23446788 8777788899999998876654
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1e-09 Score=125.18 Aligned_cols=181 Identities=13% Similarity=0.144 Sum_probs=112.3
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCce-EEEECCEeCCCccccce-EEEEccCCCCCCCCCH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEG-SVRIDGKPVTTSYMKMV-SSYVMQDDQLFPMLTV 149 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G-~I~i~G~~~~~~~~~~~-~gyv~Q~~~l~~~lTV 149 (820)
...|+++.+-+++|+++.|.|+||+|||||+..|++.... ..| .|.+.+.+.+.....++ .+... ....
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~~ 260 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMSAQQLVMRMLCAEG-------NINA 260 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSCHHHHHHHHHHHHH-------TCCH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHHHHHHc-------CCCH
Confidence 3578888888999999999999999999999999885421 123 34333322221110000 00000 0000
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh--cCCCEEEEeCCCC
Q 003437 150 FETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII--HKPSLLFLDEPTS 227 (820)
Q Consensus 150 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~--~~P~lLllDEPts 227 (820)
+. ++. ..++.++ .+++.+.++.++..+.. +.+ ..++|.+|.+ +.++.++ .+|+++++|+++.
T Consensus 261 -~~------l~~-g~l~~~~-~~~~~~a~~~l~~~~l~---i~d--~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 261 -QN------LRT-GKLTPED-WGKLTMAMGSLSNAGIY---IDD--TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp -HH------HHT-SCCCHHH-HHHHHHHHHHHHSSCEE---EEC--CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGG
T ss_pred -HH------Hhc-CCCCHHH-HHHHHHHHHHHhcCCEE---EEC--CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHH
Confidence 00 111 1233333 34566666666543322 211 2369999987 5667676 6899999999999
Q ss_pred CCC--------HHHHHHHHHHHHHHHhC-CcEEEEEEc---------C--ccH-------HHHhhcCEEEEEeCCeE
Q 003437 228 GLD--------STSAYSVVEKVKDIART-GSIVLMTIH---------Q--PSY-------RIQMLLDRIIVLARGRL 277 (820)
Q Consensus 228 gLD--------~~~~~~i~~~L~~l~~~-g~tvi~~~H---------~--~~~-------~i~~~~D~v~lL~~G~i 277 (820)
..+ .....++.+.|+.++++ |.+||+++| + |.. .+...+|.|++|++++.
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 774 23446788888888864 999999999 2 420 36678999999987653
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=6.6e-11 Score=135.78 Aligned_cols=163 Identities=18% Similarity=0.180 Sum_probs=101.9
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc--CCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCC--CHHHH
Q 003437 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAG--RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPML--TVFET 152 (820)
Q Consensus 77 ~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G--~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~l--TV~e~ 152 (820)
.+++.+.++..++|.|++||||||+|++|.. +... ..|++.+.+.+.....+. ....+|++ +|.++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~--~p~~v~l~liDpK~~el~--------~~~~lPhl~~~Vvtd 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA--QPEDVRFIMIDPKMLELS--------VYEGIPHLLTEVVTD 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC--CTTTEEEEEECCSSSGGG--------GGTTCTTBSSSCBCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC--CCceEEEEEECCchhhhh--------hhccCCcccceeecC
Confidence 4678888999999999999999999999875 2322 347777776665431111 10111221 12222
Q ss_pred HHHHHH-hcCCCCCCHHHHHHHHHHHHHHcCCCccccc--cccCCCCCCCChHHHHHH----------HHHHHHhcCCC-
Q 003437 153 FMFAAE-VRLPPSISRDEKKKRVYELLDQLGLRSATHT--YIGNEGRRGVSGGERRRV----------SIGIDIIHKPS- 218 (820)
Q Consensus 153 l~~~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~--~ig~~~~~~LSGGerqRv----------~ia~aL~~~P~- 218 (820)
...+.. ++ ...++.++|. ++++..|+.+..+. .+. ..+|+||+||. .+++++...|.
T Consensus 229 ~~~a~~~L~----~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~i 299 (512)
T 2ius_A 229 MKDAANALR----WCVNEMERRY-KLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYI 299 (512)
T ss_dssp HHHHHHHHH----HHHHHHHHHH-HHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEE
T ss_pred HHHHHHHHH----HHHHHHHHHH-HHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcE
Confidence 222211 11 1134555554 78888998765322 221 24788887752 35566677898
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC----CcEEEEEEcCcc
Q 003437 219 LLFLDEPTSGLDSTSAYSVVEKVKDIART----GSIVLMTIHQPS 259 (820)
Q Consensus 219 lLllDEPtsgLD~~~~~~i~~~L~~l~~~----g~tvi~~~H~~~ 259 (820)
++++||++.-+|.. ...+.+.|.++++. |.++|++||.|+
T Consensus 300 vlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 300 VVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 79999999988843 34566666666542 789999999997
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-10 Score=120.47 Aligned_cols=60 Identities=18% Similarity=0.193 Sum_probs=45.6
Q ss_pred cCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCcEEEEEEcCccHH-------HHhhcCEEEEEeC
Q 003437 215 HKPSLLFLDEPTSGL--DSTSAYSVVEKVKDIA-RTGSIVLMTIHQPSYR-------IQMLLDRIIVLAR 274 (820)
Q Consensus 215 ~~P~lLllDEPtsgL--D~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~-------i~~~~D~v~lL~~ 274 (820)
.+|+++++|+|++.+ |+....+++..|.+++ +.|.|||+++|..... +.+.+|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6655566667777665 4699999999987531 3567899999865
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-09 Score=117.82 Aligned_cols=113 Identities=14% Similarity=0.236 Sum_probs=80.8
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHH
Q 003437 78 ISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAA 157 (820)
Q Consensus 78 vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~ 157 (820)
+++..++|++++|+|||||||||+++.|++.+.+ ..|+|.+.+.+.... ...|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~r~-------------------~a~e------ 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFRA-------------------AAIE------ 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCH-------------------HHHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccccH-------------------HHHH------
Confidence 4555678999999999999999999999998743 357787766553210 0011
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH---HHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 003437 158 EVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRV---SIGIDIIHKPSLLFLDEPTSGLDSTSA 234 (820)
Q Consensus 158 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv---~ia~aL~~~P~lLllDEPtsgLD~~~~ 234 (820)
....+++.+|+.. + ...|||+.+++ +|++++..+|+++|+|||.. ....
T Consensus 150 ---------------qL~~~~~~~gl~~-----~-----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 150 ---------------QLKIWGERVGATV-----I-----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ---------------HHHHHHHHHTCEE-----E-----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ---------------HHHHHHHHcCCcE-----E-----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 1223445556642 2 24789999999 99999999999999999974 3455
Q ss_pred HHHHHHHHHHH
Q 003437 235 YSVVEKVKDIA 245 (820)
Q Consensus 235 ~~i~~~L~~l~ 245 (820)
..+++.|+++.
T Consensus 202 ~~l~~eL~~l~ 212 (306)
T 1vma_A 202 KNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56677676664
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.81 E-value=5.8e-09 Score=114.78 Aligned_cols=154 Identities=15% Similarity=0.278 Sum_probs=90.6
Q ss_pred ceeeee--EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 74 LLHDIS--GQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 74 iL~~vs--~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
-|+.+- +-+++|+++.|.||||+|||||+..++...... .| .+.|+.-+..+- +
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~----------------~vlyi~~E~~~~------~ 103 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA--GG----------------IAAFIDAEHALD------P 103 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT--TC----------------CEEEEESSCCCC------H
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC--CC----------------eEEEEECCCCcC------H
Confidence 344443 478999999999999999999988887643110 12 233444332110 0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcC--CCEEEEeCCCCCC
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHK--PSLLFLDEPTSGL 229 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~--P~lLllDEPtsgL 229 (820)
. . .+.+|+.. .+-.+-. ..+. .+-+.++++++.+ |+++++|||++.+
T Consensus 104 ~--~----------------------a~~lG~~~-~~l~i~~----~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 104 E--Y----------------------AKKLGVDT-DSLLVSQ----PDTG--EQALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp H--H----------------------HHHTTCCG-GGCEEEC----CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred H--H----------------------HHHcCCCH-HHeEEec----CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 0 0 11222211 0111111 1233 2345678888755 9999999999998
Q ss_pred ----------CH---HHHHHHHHHHHHH----HhCCcEEEEEEcCccH---------------HHHhhcCEEEEEeCCeE
Q 003437 230 ----------DS---TSAYSVVEKVKDI----ARTGSIVLMTIHQPSY---------------RIQMLLDRIIVLARGRL 277 (820)
Q Consensus 230 ----------D~---~~~~~i~~~L~~l----~~~g~tvi~~~H~~~~---------------~i~~~~D~v~lL~~G~i 277 (820)
|+ ..++.+.+.|++| .+.|.|||++.|.... .+..+||.++.++++++
T Consensus 153 ~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~ 232 (349)
T 2zr9_A 153 PRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIET 232 (349)
T ss_dssp CHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEE
T ss_pred chhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeee
Confidence 33 2223455555555 3459999999996431 25568999999988876
Q ss_pred EEEcC
Q 003437 278 VYMGS 282 (820)
Q Consensus 278 v~~G~ 282 (820)
+..|+
T Consensus 233 ~k~g~ 237 (349)
T 2zr9_A 233 LKDGT 237 (349)
T ss_dssp ECSSS
T ss_pred eecCc
Confidence 65544
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-08 Score=109.52 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=82.4
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHH
Q 003437 76 HDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMF 155 (820)
Q Consensus 76 ~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~ 155 (820)
+++++. +|++++|+|+||+||||+++.|++.+.+ ..|+|.+.+.++.... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~~------------------~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPA------------------AR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCHH------------------HH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccHh------------------HH-HHH--
Confidence 677777 9999999999999999999999998743 3588888776543210 00 111
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHH
Q 003437 156 AAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEP-TSGLDSTSA 234 (820)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEP-tsgLD~~~~ 234 (820)
..+.+..|+.-... + ..-.-.+.+|.+|+.+...+++++|+||| +.++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 01223345543210 0 01234466789999988899999999999 999998888
Q ss_pred HHHHHHHHHH
Q 003437 235 YSVVEKVKDI 244 (820)
Q Consensus 235 ~~i~~~L~~l 244 (820)
.++.+..+.+
T Consensus 200 ~~l~~~~~~~ 209 (295)
T 1ls1_A 200 GELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 8877776654
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=4.4e-09 Score=119.85 Aligned_cols=51 Identities=14% Similarity=0.079 Sum_probs=47.1
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.+|+|+|+++++ |+++|+|||||||||||++|+|++. +.+|+|.++|+++.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 489999999999 9999999999999999999999985 46799999998875
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=7.9e-09 Score=111.19 Aligned_cols=140 Identities=16% Similarity=0.250 Sum_probs=87.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLP 162 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~ 162 (820)
.+|++++|+||||+||||+++.|++.+.+ .+| +.+.++.+|.. ..++.|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 47999999999999999999999998742 235 23566666652 235556554332
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 003437 163 PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVK 242 (820)
Q Consensus 163 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~ 242 (820)
+.+|+... . ..+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~----~------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLE----V------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCC----B------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeE----e------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 12233211 0 1122 33355555 45999999999 99999876654444433
Q ss_pred HHH---hCCcEEEE-EEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 243 DIA---RTGSIVLM-TIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 243 ~l~---~~g~tvi~-~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
-+. ..+.++++ ++|... ++.+.+|++..+..+.++.
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCEEEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCEEEE
Confidence 332 12334444 378765 4777788766666677775
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.71 E-value=7.8e-10 Score=111.38 Aligned_cols=67 Identities=24% Similarity=0.342 Sum_probs=46.1
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCcc---ccceEEEEccCCCCCCCCCHHH
Q 003437 79 SGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY---MKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 79 s~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~---~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
|+++.+|++++|+||||||||||+++|+|+.+ .+.+++..+.... .+..++|++|++.+++.+++.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEG 70 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHT
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcC
Confidence 56778999999999999999999999999852 4677776654321 2345678998765554444433
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.5e-11 Score=130.91 Aligned_cols=123 Identities=16% Similarity=0.287 Sum_probs=83.1
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc---cccceEEEEccCCC-CCCCCC
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS---YMKMVSSYVMQDDQ-LFPMLT 148 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~---~~~~~~gyv~Q~~~-l~~~lT 148 (820)
.+++++++.+++| ++|+||||+|||||+++|++... .|.|.+++.++... ...+.+++++|+.. ..|.++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 5789999999999 99999999999999999999763 58999998765321 11233567777643 566778
Q ss_pred HHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCE
Q 003437 149 VFETFMFAAEVRLPP-SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSL 219 (820)
Q Consensus 149 V~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~l 219 (820)
+.|++......+... ....++..+.+.+++. .|||||+||+.|++++..+|++
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHHHHHHH------------------HHTTCCTTCCEEEEEEESCTTS
T ss_pred ehhhhHhhhcccccccCCcchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEecCCchh
Confidence 888885432211000 0011122223333321 4899999999999999999976
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.4e-09 Score=107.05 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDI 244 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l 244 (820)
+++.+|++|+.+|+++++| ||+||.....++++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4578899999999999999 9999999999999988763
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.1e-11 Score=127.70 Aligned_cols=123 Identities=16% Similarity=0.286 Sum_probs=82.4
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc---cccceEEEEccCC-CCCCCCC
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS---YMKMVSSYVMQDD-QLFPMLT 148 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~---~~~~~~gyv~Q~~-~l~~~lT 148 (820)
.+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++... ...+.+++++|+. ...|.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 4789999999999 99999999999999999999763 58999988765321 1123346677764 3566777
Q ss_pred HHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCE
Q 003437 149 VFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSL 219 (820)
Q Consensus 149 V~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~l 219 (820)
+.|++......+.. .....++..+.+.+++. .|||||+||+.|++++..+|++
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh
Confidence 77887443221110 00011222233333332 3889999999999999999986
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.63 E-value=5e-10 Score=132.26 Aligned_cols=159 Identities=16% Similarity=0.126 Sum_probs=98.7
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCC---------
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQ--------- 142 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~--------- 142 (820)
..+++++++.+.+|+.++|+||||+|||||+++|++++.+ ...|.+.+++.+.+. ....++|+++...
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~~~ 123 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT-ETLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKYRE 123 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC-SSCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc-ccCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHHHH
Confidence 4589999999999999999999999999999999998853 234889998877653 2345788876420
Q ss_pred -------------CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHH
Q 003437 143 -------------LFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSI 209 (820)
Q Consensus 143 -------------l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~i 209 (820)
.+..+++.+|+.....-..+...- .+..... -+.+|.-+...... .++|+|++|++..
T Consensus 124 ~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v-~~~~~~~---~~L~G~~~~~~~~~-----g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 124 KAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFI-DATGAHA---GALLGDVRHDPFQS-----GGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHTCC-----------CCCEEEECCTTCSSCCEE-ECTTCCH---HHHHCEECCCCC---------CCCCGGGGEEC
T ss_pred hhccchhhhhhcccccccccccceeeccccCCCCCEE-EcCCCCH---HhcCceEEechhhc-----CCccccccccccC
Confidence 111111111111000000000000 0000001 11222211111111 3699999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 003437 210 GIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKD 243 (820)
Q Consensus 210 a~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~ 243 (820)
+.....++.+||+||... |++.....+.+.|.+
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999998 899888888887764
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.46 E-value=7.6e-09 Score=106.91 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=39.8
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-----------cccceEEEEccC
Q 003437 79 SGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS-----------YMKMVSSYVMQD 140 (820)
Q Consensus 79 s~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~-----------~~~~~~gyv~Q~ 140 (820)
++++.+ ++++|+|||||||||||++|+|++.+ .+|+|.++|.++... ..+..++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 89999999999999999999999854 579999999887211 124567898884
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.43 E-value=9.9e-08 Score=104.95 Aligned_cols=49 Identities=24% Similarity=0.367 Sum_probs=35.9
Q ss_pred ceeeee--EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEE-EECCEe
Q 003437 74 LLHDIS--GQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSV-RIDGKP 124 (820)
Q Consensus 74 iL~~vs--~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I-~i~G~~ 124 (820)
-|+.+- +-+.+|+++.|.||||+|||||+..+++...+ ..|.| ++++..
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~ 99 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEH 99 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEeccc
Confidence 455543 47899999999999999999999999986532 23544 555543
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.40 E-value=4e-08 Score=108.73 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=88.5
Q ss_pred CCcE-EEEEcCCCCcHHHHHHHHHcCCCC---------CCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH--
Q 003437 84 RGEI-MAIMGPSGAGKSTFLDALAGRIAQ---------GSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE-- 151 (820)
Q Consensus 84 ~Ge~-~allGpnGsGKSTLl~~L~G~~~~---------~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e-- 151 (820)
.|-. ++|+|++|||||||+|.|+|.... ++..|.|.++|.++. .....|++.+.+. ..|..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve~f~ 249 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVDAFF 249 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHHHHH
Confidence 3444 999999999999999999997531 145799999987642 1223455544221 12221
Q ss_pred -HHHHHHHh------cCCCCCC--HHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHH----HHH-hcCC
Q 003437 152 -TFMFAAEV------RLPPSIS--RDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIG----IDI-IHKP 217 (820)
Q Consensus 152 -~l~~~~~~------~~~~~~~--~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia----~aL-~~~P 217 (820)
.+...... ....... ..+..+.+.++++.+++.+..--.+++ ....+|+|+++|+.++ +++ ..+|
T Consensus 250 ~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 250 VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 11110000 0001111 123334567788888876543111111 1124788888988887 555 4344
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 003437 218 SLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246 (820)
Q Consensus 218 ~lLllDEPtsgLD~~~~~~i~~~L~~l~~ 246 (820)
++ +|+|++|.....++.+.|.++..
T Consensus 329 ~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 329 DV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred cE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 54 89999999999999999988754
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.9e-07 Score=93.46 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA 245 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~ 245 (820)
...|++|+.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887754
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.6e-08 Score=102.06 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=40.1
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCcc--ccceEEEEccCC
Q 003437 79 SGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY--MKMVSSYVMQDD 141 (820)
Q Consensus 79 s~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~--~~~~~gyv~Q~~ 141 (820)
....++|++++|+||||||||||+++|++.+ |.+.++|.++.... .+...|+++|+.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~ 81 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDE 81 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCc
Confidence 3556789999999999999999999999965 88999987764321 112346677653
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.35 E-value=8.5e-10 Score=122.43 Aligned_cols=142 Identities=17% Similarity=0.143 Sum_probs=82.6
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCC-CCCCCCHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQ-LFPMLTVF 150 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~-l~~~lTV~ 150 (820)
..+|+++++.+++|++++|+||||||||||+++|+|.. +|++..-+.+ .......+|+++|... ++..++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~--~~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLP--LDRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSC--TTTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEecc--chhHHHHHHHhcchhHHHHHHHHHH
Confidence 35899999999999999999999999999999999954 4777652111 1111223566777653 23333322
Q ss_pred HHHHHHHHhc-CCCCCCHHHHHHHHHHHHH---HcCCCc-cc---cc-----cccCCCCCCCChHHHHHHHHHHHHhcCC
Q 003437 151 ETFMFAAEVR-LPPSISRDEKKKRVYELLD---QLGLRS-AT---HT-----YIGNEGRRGVSGGERRRVSIGIDIIHKP 217 (820)
Q Consensus 151 e~l~~~~~~~-~~~~~~~~~~~~~v~~~l~---~lgL~~-~~---~~-----~ig~~~~~~LSGGerqRv~ia~aL~~~P 217 (820)
..+ .+ .... ........+.+.++ .+.+.. .. +. .+ +.....+++|+++|+..+++++..|
T Consensus 229 ~~~-----~r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~l-d~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 229 GGE-----SRDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIV-TMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp TTT-----TTTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEE-EECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHH-----Hhhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCccc-ChhHHhhcHHHHHHHhhhhccCCCC
Confidence 110 00 0000 00001122333332 111110 00 00 01 1123458999999999988888999
Q ss_pred CEEE-EeCCCC
Q 003437 218 SLLF-LDEPTS 227 (820)
Q Consensus 218 ~lLl-lDEPts 227 (820)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9877 999997
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.33 E-value=4.9e-07 Score=103.22 Aligned_cols=59 Identities=22% Similarity=0.420 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHH----hCCcEEEEEEcCcc
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPT----------SGLDSTSAYSVVEKVKDIA----RTGSIVLMTIHQPS 259 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPt----------sgLD~~~~~~i~~~L~~l~----~~g~tvi~~~H~~~ 259 (820)
|++++|..++++....|.+||+||+. .|.|......+.++|..+- ..+..||.+||+++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 57788888999999999999999994 4677777677777777663 34788999999985
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-07 Score=96.96 Aligned_cols=38 Identities=29% Similarity=0.265 Sum_probs=22.9
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH-cCC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA-GRI 109 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~-G~~ 109 (820)
.+..+++|+++++|++++|+||||||||||+++|+ |+.
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35789999999999999999999999999999999 986
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.21 E-value=8.1e-07 Score=96.98 Aligned_cols=129 Identities=10% Similarity=0.130 Sum_probs=85.2
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++..... .| ..+.|+.= .++..+
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g---------~~Vl~fSl------Ems~~q- 88 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---------DD---------RGVAVFSL------EMSAEQ- 88 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---------TT---------CEEEEEES------SSCHHH-
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEeC------CCCHHH-
Confidence 357777778999999999999999999999888764310 11 12334321 233322
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST 232 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~ 232 (820)
...++......+++.+..+ | .||.+|.+|+..|...+.++++++.|+|...
T Consensus 89 -----------------l~~Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s---- 139 (338)
T 4a1f_A 89 -----------------LALRALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR---- 139 (338)
T ss_dssp -----------------HHHHHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC----
T ss_pred -----------------HHHHHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc----
Confidence 2223323333333322221 2 4999999999999999999999999998654
Q ss_pred HHHHHHHHHHHHHhC--CcEEEEEEc
Q 003437 233 SAYSVVEKVKDIART--GSIVLMTIH 256 (820)
Q Consensus 233 ~~~~i~~~L~~l~~~--g~tvi~~~H 256 (820)
..+|...++++.++ |..+|++-|
T Consensus 140 -i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 140 -IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp -HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred -HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 34677777777653 567766644
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.5e-06 Score=85.63 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=33.1
Q ss_pred ce--eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003437 74 LL--HDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIA 110 (820)
Q Consensus 74 iL--~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~ 110 (820)
.+ +++++.+.+| +++|+||||||||||+++|.+++.
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 56 7899999999 999999999999999999999874
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.5e-06 Score=105.26 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=57.2
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEE-EcCccHHHHhhcCE
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLDEPTS-GLDSTSAYSVVEKVKDIARTGSIVLMT-IHQPSYRIQMLLDR 268 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~~-~H~~~~~i~~~~D~ 268 (820)
-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.......++|+++ ||++. .+.+++++
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~ 261 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFND 261 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTS
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcC
Confidence 479999999999999999999999999996 999888777777776655456777775 88775 46777774
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.5e-07 Score=98.58 Aligned_cols=52 Identities=25% Similarity=0.303 Sum_probs=35.7
Q ss_pred eEEEEEE-EEEECcccccccccccccccceeeeeEEEeC---CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 47 GLEFKNL-SYSIMKKQKKDGVWITKEAYLLHDISGQAIR---GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 47 ~L~~~nl-s~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.|+++|| +++|.+ ...+|+|+|+++.+ |+.++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~-----------~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE-----------EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC-----------cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5999999 999822 23599999999999 9999999999999999999999965
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.1e-06 Score=93.19 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=48.0
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEE--cCcc
Q 003437 198 GVSGGERRRVSIGIDIIHKPSLLFLD-EPTSGLDSTSAYSVVEKVKDIARTGSIVLMTI--HQPS 259 (820)
Q Consensus 198 ~LSGGerqRv~ia~aL~~~P~lLllD-EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~--H~~~ 259 (820)
.+|+||+|++. +.+...++-++++| +|+.++|......+++.++.+.. +..+|++. ||..
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 58999998876 55555677789999 99999999998888888877654 67788888 7754
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=4.5e-07 Score=91.40 Aligned_cols=127 Identities=18% Similarity=0.268 Sum_probs=71.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSIS 166 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~ 166 (820)
+++|+|+|||||||+.++|++ + |...+++..+. +... + +.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-l------g~~~id~d~~~----~~~~----~-----~~-------------------- 43 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-L------GVPLVDADVVA----REVV----A-----KD-------------------- 43 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-T------TCCEEEHHHHH----HHTT----C-----SS--------------------
T ss_pred EEEEECCCCCCHHHHHHHHHH-C------CCcccchHHHH----HHHc----c-----CC--------------------
Confidence 689999999999999999998 2 33334322110 0000 0 00
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 003437 167 RDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR 246 (820)
Q Consensus 167 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~ 246 (820)
...+.++.+.+|... -.+.|+.+|..++..+..+|+.+.++ ++.++|.....+.+.++..
T Consensus 44 ----~~~~~~i~~~~g~~~------------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-- 103 (206)
T 1jjv_A 44 ----SPLLSKIVEHFGAQI------------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-- 103 (206)
T ss_dssp ----CHHHHHHHHHHCTTC------------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--
T ss_pred ----hHHHHHHHHHhCHHH------------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--
Confidence 012344556666431 14678889999998888888654333 3345565555555444332
Q ss_pred CCcEEEEEEcCccHH-HHhhcCEEEEEe
Q 003437 247 TGSIVLMTIHQPSYR-IQMLLDRIIVLA 273 (820)
Q Consensus 247 ~g~tvi~~~H~~~~~-i~~~~D~v~lL~ 273 (820)
.+.++|+.+|..... ....||.+++|+
T Consensus 104 ~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 104 TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 356888888876431 245788887773
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.3e-08 Score=114.84 Aligned_cols=129 Identities=17% Similarity=0.302 Sum_probs=85.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCcc---ccceEEEEccCCC-CCCCCC
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSY---MKMVSSYVMQDDQ-LFPMLT 148 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~---~~~~~gyv~Q~~~-l~~~lT 148 (820)
.+++++++.+.+| ++|+||||+|||||+++|++... .+.|.++|.++.... ..+.+..++|... ..|.+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 4788899999999 99999999999999999999763 488999987764321 1123446676643 455555
Q ss_pred HHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 003437 149 VFETFMFAAEVRLP-PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTS 227 (820)
Q Consensus 149 V~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPts 227 (820)
+.|++......+.. .....++..+.+.+++. .|||||+|+..|+++...+|++ |||+..
T Consensus 128 ~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 128 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 55655332111100 00112333344444443 2788888898899999999987 888764
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.95 E-value=1.4e-06 Score=94.70 Aligned_cols=76 Identities=24% Similarity=0.207 Sum_probs=55.2
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc-------cc-----cceEEEE-ccCC
Q 003437 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS-------YM-----KMVSSYV-MQDD 141 (820)
Q Consensus 75 L~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~-------~~-----~~~~gyv-~Q~~ 141 (820)
++++++.+++|++++|+|+||+||||++..|++.+.+ ..|+|.+.+.++... .+ +..+.++ +|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 4688999999999999999999999999999998753 468999988776431 11 4457888 6654
Q ss_pred CCCCCCCHHHH
Q 003437 142 QLFPMLTVFET 152 (820)
Q Consensus 142 ~l~~~lTV~e~ 152 (820)
...|..++.++
T Consensus 173 ~~~p~~~~~~~ 183 (320)
T 1zu4_A 173 NADPASVVFDA 183 (320)
T ss_dssp TCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 44443333333
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=3.6e-07 Score=92.04 Aligned_cols=51 Identities=27% Similarity=0.331 Sum_probs=41.9
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEE--EECCEeCC
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSV--RIDGKPVT 126 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I--~i~G~~~~ 126 (820)
...+..++..++|++++|+||||||||||+++|++++. ..|.+ +++|.++.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNVR 65 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHHT
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchhh
Confidence 35666777778999999999999999999999999873 34777 88876654
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.93 E-value=2.3e-05 Score=86.19 Aligned_cols=44 Identities=9% Similarity=0.074 Sum_probs=36.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCcEEEEEEcCcc
Q 003437 215 HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR---TGSIVLMTIHQPS 259 (820)
Q Consensus 215 ~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~---~g~tvi~~~H~~~ 259 (820)
.+|.+|++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888877665 5789999999985
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=2.1e-05 Score=86.50 Aligned_cols=57 Identities=11% Similarity=0.147 Sum_probs=39.5
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEEc
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGS-IVLMTIH 256 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~-tvi~~~H 256 (820)
.++.++++..+++..+.+|+++++.-..+..|... ...+++++.+...|. +|++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999877774333445433 455667777765554 5555554
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=3.8e-06 Score=100.10 Aligned_cols=132 Identities=14% Similarity=0.087 Sum_probs=75.9
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCc---cccceEEEEccCCCCCCCCCHHHHHHHH
Q 003437 80 GQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTS---YMKMVSSYVMQDDQLFPMLTVFETFMFA 156 (820)
Q Consensus 80 ~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~ 156 (820)
+.+++|+.++|+|++|+|||||++.|++........|+| .+|..+... ..++.+.+.+|...+... ++..
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~----- 76 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV----- 76 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE-----
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE-----
Confidence 456789999999999999999999999865433356877 566554321 112333444443322211 1000
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 003437 157 AEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYS 236 (820)
Q Consensus 157 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~ 236 (820)
...|+. |. ..++ .......-..+.-++++| |+.|+|+.+.
T Consensus 77 ----------------------------nliDTp-G~---~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~-- 116 (665)
T 2dy1_A 77 ----------------------------FLLDAP-GY---GDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE-- 116 (665)
T ss_dssp ----------------------------EEEECC-CS---GGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH--
T ss_pred ----------------------------EEEeCC-Cc---cchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH--
Confidence 111211 10 0111 112222235677889999 9999998776
Q ss_pred HHHHHHHHHhCCcEEEEEEcCccH
Q 003437 237 VVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 237 i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
+.++.+.+.+..+|++.|..+.
T Consensus 117 --~~~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 117 --RAWTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp --HHHHHHHHTTCCEEEEEECGGG
T ss_pred --HHHHHHHHccCCEEEEecCCch
Confidence 3334444468888999998764
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.88 E-value=5.5e-06 Score=83.16 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=24.9
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+++|||+++.+|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45899999999999999999999999999999999865
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=2.1e-06 Score=97.42 Aligned_cols=69 Identities=12% Similarity=0.308 Sum_probs=47.5
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEE-EeCCeEEEEcCc
Q 003437 215 HKPSLLFLDEPTSGLDS-TSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIV-LARGRLVYMGSP 283 (820)
Q Consensus 215 ~~P~lLllDEPtsgLD~-~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l-L~~G~iv~~G~~ 283 (820)
.+|++||+||+..-.+. .++..++..+..+.+.|+.||+++|.+..++..+.+++.- +..|.++...++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 48999999999887764 6788899999988888999999999864322222222221 234555555544
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.83 E-value=7.8e-05 Score=81.57 Aligned_cols=145 Identities=12% Similarity=0.089 Sum_probs=79.5
Q ss_pred eeeee-EEEeCCcEEEEEcCCCCcHHHHHHHHHcCC-CCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 75 LHDIS-GQAIRGEIMAIMGPSGAGKSTFLDALAGRI-AQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 75 L~~vs-~~i~~Ge~~allGpnGsGKSTLl~~L~G~~-~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
|+.+- +-+++|+++.|.||+|+|||||+..++... .+....| ....+.|+.-+..+ ....-
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg-------------~~~~vlyi~~E~~~----~~~~l 173 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY-------------PGGKIIFIDTENTF----RPDRL 173 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB-------------CCCEEEEEESSSCC----CHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC-------------CCCeEEEEECCCCC----CHHHH
Confidence 44433 578999999999999999999999988752 1111001 01234455443321 22222
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH-HHHHHHHHHHh----cCCCEEEEeCCCC
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE-RRRVSIGIDII----HKPSLLFLDEPTS 227 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe-rqRv~ia~aL~----~~P~lLllDEPts 227 (820)
......+ +.+. +++++.+-+. +..++.+ .+.+..++.++ .+++++++|+.++
T Consensus 174 ~~~~~~~----g~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 174 RDIADRF----NVDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp HHHHHHT----TCCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHc----CCCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 2222111 1221 1223322111 1123333 34555566666 5789999999998
Q ss_pred CCCHH------------HHHHHHHHHHHHHh-CCcEEEEEEcCcc
Q 003437 228 GLDST------------SAYSVVEKVKDIAR-TGSIVLMTIHQPS 259 (820)
Q Consensus 228 gLD~~------------~~~~i~~~L~~l~~-~g~tvi~~~H~~~ 259 (820)
-++.. ...+++..|+++++ .+.+||++.|-..
T Consensus 231 l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 231 LFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp GHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 66432 13556666777765 4888888887543
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.83 E-value=1.5e-06 Score=90.96 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=46.1
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH---cCCCCCCCceEEE--------ECCEeCCCc----cccceEEEEc
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA---GRIAQGSLEGSVR--------IDGKPVTTS----YMKMVSSYVM 138 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~---G~~~~~~~~G~I~--------i~G~~~~~~----~~~~~~gyv~ 138 (820)
++++.+ .+|++++|+|||||||||++++|+ |+.. +++|.|. .+|.++... ..++.+++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 444443 789999999999999999999999 8653 4689998 889887421 2345578888
Q ss_pred cCC
Q 003437 139 QDD 141 (820)
Q Consensus 139 Q~~ 141 (820)
|++
T Consensus 94 ~~~ 96 (252)
T 4e22_A 94 VSQ 96 (252)
T ss_dssp EEE
T ss_pred ecC
Confidence 753
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.82 E-value=8.9e-06 Score=81.44 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=26.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIA 110 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~~ 110 (820)
++.+|++++|+||||||||||+++|++++.
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999999873
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00016 Score=76.78 Aligned_cols=73 Identities=16% Similarity=0.247 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCcEEEEEEcCcc---HHH
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST----------SAYSVVEKVKDIAR----TGSIVLMTIHQPS---YRI 262 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~----------~~~~i~~~L~~l~~----~g~tvi~~~H~~~---~~i 262 (820)
+++++.|..+..+...+|.+|++||+.+-++.. ....++..+..+.. .+..||.+++++. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356777777888888899999999998876532 22234444443321 2456778888653 334
Q ss_pred HhhcCEEEEE
Q 003437 263 QMLLDRIIVL 272 (820)
Q Consensus 263 ~~~~D~v~lL 272 (820)
.+-|++.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4456654433
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=7.2e-06 Score=84.44 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=34.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..++|++++|.|+||||||||+++|+|+ .|+|.+.+++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 4468999999999999999999999996 48899888764
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=1.3e-05 Score=79.17 Aligned_cols=36 Identities=11% Similarity=0.301 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEE
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRI 120 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i 120 (820)
+|++++|+||||||||||+++|++..++ ...|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeec
Confidence 6899999999999999999999998632 23455544
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.72 E-value=2.8e-05 Score=84.07 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=83.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
.-|+++.+-+++|+++.|.|++|+|||||+.-++..... .| ..+.|+.=+ ++..+.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---~g---------------~~vl~~slE------~s~~~l 111 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---ND---------------DVVNLHSLE------MGKKEN 111 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---TT---------------CEEEEEESS------SCHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cC---------------CeEEEEECC------CCHHHH
Confidence 467888777999999999999999999999888753210 11 123444321 333332
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDST 232 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~ 232 (820)
..++......+.+.+..+.. ..||.+|++|+..|...+.++++++.|+|...
T Consensus 112 ------------------~~R~~~~~~~i~~~~l~~~~------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~---- 163 (315)
T 3bh0_A 112 ------------------IKRLIVTAGSINAQKIKAAR------RDFASEDWGKLSMAIGEISNSNINIFDKAGQS---- 163 (315)
T ss_dssp ------------------HHHHHHHHTTCCHHHHHSCH------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB----
T ss_pred ------------------HHHHHHHHcCCCHHHHhcCC------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC----
Confidence 22222222222222211100 12899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHhC-CcE--EEEEEc
Q 003437 233 SAYSVVEKVKDIART-GSI--VLMTIH 256 (820)
Q Consensus 233 ~~~~i~~~L~~l~~~-g~t--vi~~~H 256 (820)
..++...++++.++ |.. +|++-|
T Consensus 164 -~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 -VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp -HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred -HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 34566777777654 555 666655
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00017 Score=78.17 Aligned_cols=146 Identities=15% Similarity=0.227 Sum_probs=79.9
Q ss_pred ceeeee-EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 74 LLHDIS-GQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 74 iL~~vs-~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
.|+.+- +-+++|+++.|.||+|+|||||+..++.........| | ....+.|+.-+..+ ...+-
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g-------~~~~vlyi~~e~~~----~~~~l 158 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----G-------LSGKAVYIDTEGTF----RWERI 158 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----C-------CSCEEEEEESSSCC----CHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----C-------CCCeEEEEECCCCC----CHHHH
Confidence 344442 5789999999999999999999998886431110011 1 01234455433221 12221
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH-HHHHHHHHHHHh---cCCCEEEEeCCCCC
Q 003437 153 FMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGG-ERRRVSIGIDII---HKPSLLFLDEPTSG 228 (820)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGG-erqRv~ia~aL~---~~P~lLllDEPtsg 228 (820)
......+ +.+.+ ++++.+ .+. +..++. +.+.+..++.++ .+|+++++|+.++-
T Consensus 159 ~~~~~~~----g~~~~-------~~~~~l--------~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 159 ENMAKAL----GLDID-------NVMNNI--------YYI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHT----TCCHH-------HHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHh----CCCHH-------HHhccE--------EEE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 1111111 12211 122211 111 113333 235677777787 67999999999986
Q ss_pred CCH--------H----HHHHHHHHHHHHHh-CCcEEEEEEcCc
Q 003437 229 LDS--------T----SAYSVVEKVKDIAR-TGSIVLMTIHQP 258 (820)
Q Consensus 229 LD~--------~----~~~~i~~~L~~l~~-~g~tvi~~~H~~ 258 (820)
++. . ...+++..|+++++ .+.+||++.|-.
T Consensus 216 ~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 216 FRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred hhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 532 1 13456666666665 488888887754
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=1.1e-05 Score=78.78 Aligned_cols=37 Identities=30% Similarity=0.456 Sum_probs=31.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
.+|++++|+|+||||||||+++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCccc
Confidence 368999999999999999999999864 7777776554
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.57 E-value=3.6e-05 Score=77.84 Aligned_cols=28 Identities=36% Similarity=0.559 Sum_probs=26.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRIA 110 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~~ 110 (820)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999999874
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.54 E-value=5.4e-05 Score=81.31 Aligned_cols=63 Identities=10% Similarity=0.152 Sum_probs=44.6
Q ss_pred CChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-Cc--EEEEEEcCccHHHHhhcCEE
Q 003437 199 VSGGERRRVSIGIDII--HKPSLLFLDEPTSGLDSTS-AYSVVEKVKDIART-GS--IVLMTIHQPSYRIQMLLDRI 269 (820)
Q Consensus 199 LSGGerqRv~ia~aL~--~~P~lLllDEPtsgLD~~~-~~~i~~~L~~l~~~-g~--tvi~~~H~~~~~i~~~~D~v 269 (820)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.++.|+-.. +..++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~-v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN-VDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT-HHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCC-HHHHHHHH
Confidence 888886 5566666 68999998 7899876 67788888888764 43 55566666543 56666654
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.54 E-value=3.3e-05 Score=77.85 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=26.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRIA 110 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~~ 110 (820)
..+|++++|+||||||||||++.|.+..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34799999999999999999999998763
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.53 E-value=9.3e-06 Score=88.03 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=33.1
Q ss_pred ccceeeeeEEEeCCc------EEEEEcCCCCcHHHHHHHHHcCCC
Q 003437 72 AYLLHDISGQAIRGE------IMAIMGPSGAGKSTFLDALAGRIA 110 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge------~~allGpnGsGKSTLl~~L~G~~~ 110 (820)
+..|++++..+..++ ++||+||||||||||+++|++++.
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346777777777666 999999999999999999999874
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=4.7e-05 Score=76.61 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=26.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+++|++++|+|+||||||||++.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45679999999999999999999999965
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.42 E-value=2.5e-05 Score=78.55 Aligned_cols=41 Identities=22% Similarity=0.205 Sum_probs=33.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
.++|++++|+|+||||||||+++|++.+.+ ..|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~--~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE--QGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhh--cCCeEEEeccC
Confidence 467999999999999999999999997632 35777765544
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00027 Score=79.53 Aligned_cols=124 Identities=16% Similarity=0.191 Sum_probs=68.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP 163 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~ 163 (820)
++.+++++||+|+||||++..|++.+.. ..++|.+-+.+... ....|.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~--~G~kVllv~~D~~r-------------------~~a~eqL~--------- 145 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK--RGYKVGLVAADVYR-------------------PAAYDQLL--------- 145 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECCSC-------------------HHHHHHHH---------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEecCccc-------------------hhHHHHHH---------
Confidence 5789999999999999999999987642 23455443332110 01122222
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCC-CC--CCHHHHHHHHHH
Q 003437 164 SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPT-SG--LDSTSAYSVVEK 240 (820)
Q Consensus 164 ~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPt-sg--LD~~~~~~i~~~ 240 (820)
.+.+..|++-... . .+..--+--+-+++.+...+++++|+|+|- .+ .|+....++.++
T Consensus 146 ------------~~~~~~gv~~~~~---~----~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i 206 (433)
T 3kl4_A 146 ------------QLGNQIGVQVYGE---P----NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEM 206 (433)
T ss_dssp ------------HHHHTTTCCEECC---T----TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHH
T ss_pred ------------HHHHhcCCceeec---c----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHH
Confidence 2223334432110 0 011111222334555555689999999987 34 788777777776
Q ss_pred HHHHHhCCcEEEEEEc
Q 003437 241 VKDIARTGSIVLMTIH 256 (820)
Q Consensus 241 L~~l~~~g~tvi~~~H 256 (820)
++.+......+++..|
T Consensus 207 ~~~~~pd~vlLVlDa~ 222 (433)
T 3kl4_A 207 YDVLKPDDVILVIDAS 222 (433)
T ss_dssp HHHHCCSEEEEEEEGG
T ss_pred HHhhCCcceEEEEeCc
Confidence 6555433444444444
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.40 E-value=4.6e-05 Score=74.05 Aligned_cols=26 Identities=38% Similarity=0.560 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.|++++|+||||||||||+++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999999999999976
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.40 E-value=4.4e-05 Score=83.50 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999865
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0011 Score=74.91 Aligned_cols=154 Identities=16% Similarity=0.200 Sum_probs=85.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHHH
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFET 152 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e~ 152 (820)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++...... .| ..+.|+.=+ ++..+.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g---------------~~vl~~slE------~~~~~l 244 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK--EG---------------VGVGIYSLE------MPAAQL 244 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TC---------------CCEEEEESS------SCHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CC---------------CeEEEEECC------CCHHHH
Confidence 4577777779999999999999999999998887643110 11 012222211 222221
Q ss_pred HHH--HHHhcCC------CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh--cCCCEEEE
Q 003437 153 FMF--AAEVRLP------PSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII--HKPSLLFL 222 (820)
Q Consensus 153 l~~--~~~~~~~------~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~--~~P~lLll 222 (820)
..- +.....+ ..++.++ .+++.+.++.+.-.+ -.+.+ ..++|..+. .+.++.+. .+|+++++
T Consensus 245 ~~R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~---l~i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvI 316 (444)
T 2q6t_A 245 TLRMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAP---IYIDD--TPDLTLMEV--RARARRLVSQNQVGLIII 316 (444)
T ss_dssp HHHHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSC---EEEEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCC---EEEEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEE
Confidence 110 0000000 0123333 233444444442211 11211 124777665 34455555 58999999
Q ss_pred eCCCCCCCH----------HHHHHHHHHHHHHHhC-CcEEEEEEcC
Q 003437 223 DEPTSGLDS----------TSAYSVVEKVKDIART-GSIVLMTIHQ 257 (820)
Q Consensus 223 DEPtsgLD~----------~~~~~i~~~L~~l~~~-g~tvi~~~H~ 257 (820)
|..+.-.+. ....++.+.|+.++++ +.+||+++|-
T Consensus 317 D~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql 362 (444)
T 2q6t_A 317 DYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQL 362 (444)
T ss_dssp ECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred cChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 999764432 1235677888888875 8999999883
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00031 Score=75.14 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=26.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+.++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35788999999999999999999999865
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.29 E-value=4.9e-05 Score=88.25 Aligned_cols=43 Identities=42% Similarity=0.605 Sum_probs=35.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCce-EEE-ECCEeC
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEG-SVR-IDGKPV 125 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G-~I~-i~G~~~ 125 (820)
.+++|++++|+|+||||||||+++|+|++.+ .+| +|. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcHH
Confidence 4679999999999999999999999998743 344 674 887654
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00017 Score=69.25 Aligned_cols=31 Identities=39% Similarity=0.548 Sum_probs=25.6
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 76 HDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 76 ~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
++.++.+.+| +.+|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666665 999999999999999999874
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00056 Score=70.27 Aligned_cols=66 Identities=18% Similarity=0.061 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcC
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTS-GLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLD 267 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D 267 (820)
+.|...+.. ...+.+-+++++||.-. ++|.......++.+.....+-++++++..-+...+.++++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 446655553 33578999999999976 6887766555555544433345666665555444555554
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0062 Score=66.78 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=28.6
Q ss_pred ceeeee--EEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 74 LLHDIS--GQAIRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 74 iL~~vs--~~i~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
-|+.+- +-+++|+++.|.|++|+|||||...++..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455543 35889999999999999999999887753
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0005 Score=77.70 Aligned_cols=39 Identities=31% Similarity=0.530 Sum_probs=31.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC----------CCCCceEEEECCEeC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRIA----------QGSLEGSVRIDGKPV 125 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~~----------~~~~~G~I~i~G~~~ 125 (820)
.++|+|+||+|||||+|.|+|... ..+..|.+.++|+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 799999999999999999999752 013568999999764
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0049 Score=63.14 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=28.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCcEEEEEEcC
Q 003437 215 HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR--TGSIVLMTIHQ 257 (820)
Q Consensus 215 ~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~--~g~tvi~~~H~ 257 (820)
.+|+++|+..+.+.++......+..+++.+.. ...++|+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 47899999999888888665555444443322 13577888874
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.95 E-value=9e-05 Score=81.51 Aligned_cols=33 Identities=33% Similarity=0.507 Sum_probs=31.5
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 77 ~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
|+.+.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999865
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00076 Score=65.50 Aligned_cols=27 Identities=48% Similarity=0.671 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999864
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.91 E-value=8.1e-05 Score=81.36 Aligned_cols=50 Identities=28% Similarity=0.274 Sum_probs=40.9
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
.+++++++.+.+|.+++|+|++|+|||||++.|++.+.+ ..|+|.+-+.+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~--~~~~v~v~~~d 93 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR--EGLKVAVIAVD 93 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEEC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh--cCCeEEEEeec
Confidence 478889998999999999999999999999999997632 34666654444
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0018 Score=69.57 Aligned_cols=46 Identities=9% Similarity=0.114 Sum_probs=35.4
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEEcCcc
Q 003437 214 IHKPSLLFLDEPTS-GLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259 (820)
Q Consensus 214 ~~~P~lLllDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 259 (820)
..++.+|++||+.. ..|......+...+..+.+.|..+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 35699999999866 23447788899999888777777888887553
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0015 Score=68.70 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++.-+.|.||+|+|||||+++|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 466779999999999999999999864
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00017 Score=83.77 Aligned_cols=48 Identities=19% Similarity=0.469 Sum_probs=39.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK 123 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~ 123 (820)
.+++++++.+ +|+.++|+||||+|||||+++|++.+. +..|.|.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 3677778777 899999999999999999999999874 34577777664
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00049 Score=70.79 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=26.9
Q ss_pred ceeeeeEEEe---CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003437 74 LLHDISGQAI---RGEIMAIMGPSGAGKSTFLDALAGRIA 110 (820)
Q Consensus 74 iL~~vs~~i~---~Ge~~allGpnGsGKSTLl~~L~G~~~ 110 (820)
-|.++++++. +|.+++|.|++||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4677777776 899999999999999999999999763
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0018 Score=66.30 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=42.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEc---------CccHHHHhhcCEEEEEe
Q 003437 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIH---------QPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 216 ~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~lL~ 273 (820)
+++++++||--. |+. ++++.++.+++.|..||++-| .....+..++|+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 366677777777999999999 55667788999998875
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0014 Score=65.23 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+.|.||+|+|||||+++|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999854
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0011 Score=65.33 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=21.1
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999998887 6799999999999999999984
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00034 Score=76.66 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=32.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
+++.+++|+|++|||||||+|.|+|.+.+ ..|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~--~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE--RGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh--cCCeEEEEeecC
Confidence 35789999999999999999999997632 357777766554
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00073 Score=68.13 Aligned_cols=33 Identities=36% Similarity=0.533 Sum_probs=26.3
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 76 HDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 76 ~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+.++.+.+| +++|+|||||||||++++|.-.+
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 3455666665 99999999999999999986443
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0026 Score=71.95 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=30.0
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
.-|+.+.+-+++|+++.|.|++|+|||||+--++..
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 356666667899999999999999999998777653
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00076 Score=65.97 Aligned_cols=40 Identities=35% Similarity=0.514 Sum_probs=30.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCce--EEEECCEeC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEG--SVRIDGKPV 125 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G--~I~i~G~~~ 125 (820)
++|++++|+|++||||||+++.|++.+.+ .| .|.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~---~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC---HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh---CCCcEEEECChHH
Confidence 46999999999999999999999997632 24 555555443
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00074 Score=68.43 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=38.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCceEEEE--------CCEeCCCc----cccceEEEEccC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRIA-QGSLEGSVRI--------DGKPVTTS----YMKMVSSYVMQD 140 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~~-~~~~~G~I~i--------~G~~~~~~----~~~~~~gyv~Q~ 140 (820)
+.+++|+|||||||||++++|++.+. +..+.|++.. +|.++... ..++.+++++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 56899999999999999999998641 1235677766 56655421 123445667665
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00085 Score=67.99 Aligned_cols=44 Identities=7% Similarity=0.111 Sum_probs=31.1
Q ss_pred cCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcE-EEEEEcCc
Q 003437 215 HKPSLLFLDEPTSGL-DSTSAYSVVEKVKDIARTGSI-VLMTIHQP 258 (820)
Q Consensus 215 ~~P~lLllDEPtsgL-D~~~~~~i~~~L~~l~~~g~t-vi~~~H~~ 258 (820)
.+|.+|++||...-- +......+.+.+..+...+.. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 568999999965532 233377788888887766655 77777754
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.64 E-value=6.3e-05 Score=82.96 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=32.8
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+.++||+..+.+ +.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 17 ~v~~~~l~~~~~~------------k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 17 YVGFANLPNQVHR------------KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ----CCHHHHHHT------------HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eEEeccchHHhCC------------eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 3667777655432 34788888877 999999999999999998864
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0053 Score=66.09 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=28.4
Q ss_pred ceeeee-EEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 74 LLHDIS-GQAIRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 74 iL~~vs-~~i~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
-|+.+- +-+++|+++.|.||+|+|||||+..++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444443 5789999999999999999999988875
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0009 Score=67.08 Aligned_cols=28 Identities=29% Similarity=0.522 Sum_probs=25.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+|.+++|+||||||||||.+.|+..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4579999999999999999999999865
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.011 Score=64.62 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+..-+.|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999854
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00091 Score=65.97 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=26.3
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 77 DISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 77 ~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46777788999999999999999999999975
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0026 Score=60.97 Aligned_cols=23 Identities=39% Similarity=0.652 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999954
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00054 Score=68.22 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=30.7
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
.+++++|+..++++ ++|+|++|+|||||++.+.+-
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 48899998888874 789999999999999999873
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00062 Score=68.65 Aligned_cols=42 Identities=29% Similarity=0.393 Sum_probs=33.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCce--EEEECCEe
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEG--SVRIDGKP 124 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G--~I~i~G~~ 124 (820)
.+++|.+++|+|++||||||+.+.|++.+. +..| .+.++|..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDGDN 64 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECChH
Confidence 356799999999999999999999999763 1346 77776543
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0026 Score=70.08 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=27.9
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALA 106 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~ 106 (820)
.+++..+.+.+| +++|.|||||||||+|.+|.
T Consensus 15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 357778888776 99999999999999999986
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0091 Score=61.54 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+..-+.|.||+|+|||||++.|+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44568899999999999999999854
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0014 Score=65.39 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 003437 87 IMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G 107 (820)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.00083 Score=67.06 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+++|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999864
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0033 Score=61.11 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.00059 Score=74.56 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=33.9
Q ss_pred cceeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHHcCC
Q 003437 73 YLLHDISGQAIRGEI--MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~--~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 378888888999998 9999999999999999999975
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.048 Score=58.67 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+..-+.|.||+|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 456789999999999999999999854
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.055 Score=59.44 Aligned_cols=34 Identities=35% Similarity=0.474 Sum_probs=27.3
Q ss_pred ceeeee--EEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 74 LLHDIS--GQAIRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 74 iL~~vs--~~i~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
-|+.+- +-+++|+++.|.||+|+|||||+..++.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 344433 3689999999999999999999977764
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.047 Score=62.49 Aligned_cols=35 Identities=29% Similarity=0.236 Sum_probs=29.0
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
.-|+.+.+-+.+|+++.|.|++|+|||||+--++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 35666655689999999999999999999876664
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.014 Score=75.25 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=26.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 59999999999999999999999988743
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0014 Score=73.67 Aligned_cols=47 Identities=15% Similarity=0.036 Sum_probs=39.1
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 76 HDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 76 ~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
+++++. +|++++++|+||+||||++..|++.+.+ ..|+|.+.+.++.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQ 137 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCSS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeecccc
Confidence 567777 8999999999999999999999998753 3588888776653
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0014 Score=68.22 Aligned_cols=41 Identities=27% Similarity=0.315 Sum_probs=32.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
..+++.++.|+|+|||||||+.+.|+..+. .+.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~----~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ----GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT----TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC----CCcEEEecHHH
Confidence 456788999999999999999999998762 25567776543
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0028 Score=62.32 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=25.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999876
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0042 Score=67.62 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999754
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0031 Score=62.00 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC-CCCceEEEECCE
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRIAQ-GSLEGSVRIDGK 123 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~~~-~~~~G~I~i~G~ 123 (820)
.+++|+|+||||||||++.|.+.+.. +..-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 58999999999999999999986532 122366666553
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0028 Score=61.96 Aligned_cols=26 Identities=38% Similarity=0.571 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999864
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0042 Score=60.22 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
|.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999865
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0039 Score=59.86 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999754
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0009 Score=72.64 Aligned_cols=38 Identities=26% Similarity=0.481 Sum_probs=34.3
Q ss_pred ccceeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHHcCC
Q 003437 72 AYLLHDISGQAIRGEI--MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~--~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+++.++..++.|++ +.+.||+|+|||||++++++.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3478888888999998 9999999999999999999976
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0046 Score=63.41 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=24.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3568999999999999999999999854
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0039 Score=69.25 Aligned_cols=43 Identities=26% Similarity=0.315 Sum_probs=32.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCC---------CCCCceEEEECCE
Q 003437 81 QAIRGEIMAIMGPSGAGKSTFLDALAGRIA---------QGSLEGSVRIDGK 123 (820)
Q Consensus 81 ~i~~Ge~~allGpnGsGKSTLl~~L~G~~~---------~~~~~G~I~i~G~ 123 (820)
.+..|..++|+|+||+|||||+|+|+|... ..+..|.|.+.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 456788999999999999999999999721 1245688887764
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0032 Score=65.22 Aligned_cols=33 Identities=30% Similarity=0.730 Sum_probs=23.6
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 75 L~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++++++...+| +.|.||+|+|||||+++|++..
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 44444444444 8999999999999999999865
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0046 Score=60.36 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999853
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0012 Score=70.79 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=35.5
Q ss_pred ee-eeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 76 HD-ISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 76 ~~-vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
++ +++..+ |++++++|++|+||||++..|++.+.. ..|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecC
Confidence 45 667665 999999999999999999999997742 24666665444
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0058 Score=59.67 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
|.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.006 Score=62.43 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=43.5
Q ss_pred HhcCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEEEc-----Ccc----------------HHHHhhcCEEE
Q 003437 213 IIHKPSLLFLDEPTSG-LDSTSAYSVVEKVKDIARTGSIVLMTIH-----QPS----------------YRIQMLLDRII 270 (820)
Q Consensus 213 L~~~P~lLllDEPtsg-LD~~~~~~i~~~L~~l~~~g~tvi~~~H-----~~~----------------~~i~~~~D~v~ 270 (820)
|..+|+++++||+-.- .+.......++.+..+...|..++.++| ... ..+++.+|.|.
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~ 160 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLV 160 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEE
Confidence 4468999999997642 3322223333344445567889999998 111 12445566666
Q ss_pred EEeCCeEEEEcCccchhhhhhc
Q 003437 271 VLARGRLVYMGSPVALPAHLAG 292 (820)
Q Consensus 271 lL~~G~iv~~G~~~~~~~~f~~ 292 (820)
++ +-+|+++.+.+..
T Consensus 161 lv-------D~~p~~l~~rl~~ 175 (228)
T 2r8r_A 161 LI-------DLPPRELLERLRD 175 (228)
T ss_dssp EB-------CCCHHHHHHHHHT
T ss_pred Ee-------cCCHHHHHHHHHC
Confidence 64 3467777766654
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0062 Score=62.78 Aligned_cols=25 Identities=36% Similarity=0.622 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999754
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0058 Score=59.91 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 57799999999999999999998643
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0065 Score=63.25 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999854
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0073 Score=57.67 Aligned_cols=19 Identities=42% Similarity=0.721 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 003437 87 IMAIMGPSGAGKSTFLDAL 105 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L 105 (820)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0085 Score=58.49 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998754
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0078 Score=59.82 Aligned_cols=23 Identities=48% Similarity=0.706 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999987654
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.01 Score=63.78 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=22.0
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHH-HHHHc
Q 003437 80 GQAIRGEIMAIMGPSGAGKSTFL-DALAG 107 (820)
Q Consensus 80 ~~i~~Ge~~allGpnGsGKSTLl-~~L~G 107 (820)
+=+.+| ++.|.||+|+|||||+ .+++.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 457889 9999999999999995 44444
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.096 Score=57.70 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++.-+.|.||+|+|||+|.++|+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999999854
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0088 Score=60.24 Aligned_cols=23 Identities=43% Similarity=0.579 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G 107 (820)
+-+++|.|++||||||+.+.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999997
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.26 E-value=0.015 Score=58.04 Aligned_cols=53 Identities=21% Similarity=0.289 Sum_probs=40.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEc---------CccHHHHhhcCEEEEEe
Q 003437 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIH---------QPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 216 ~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~lL~ 273 (820)
+.+++++||--- ||+. +++.|+.++..|..||++-+ .++..+..++|.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 478999999544 6643 36678888878999999999 45567888999987764
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0085 Score=58.34 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
.+..+.|.|++||||||+.+.|+-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999854
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0092 Score=58.88 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999865
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.01 Score=58.67 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999855
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.098 Score=58.04 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=22.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+-.=+.|.||+|+|||+|.++|++..
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 333448899999999999999999854
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.01 Score=58.88 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999865
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.01 Score=57.29 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 003437 86 EIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G 107 (820)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.011 Score=58.80 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998653
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.01 Score=57.47 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999754
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.19 Score=65.08 Aligned_cols=153 Identities=14% Similarity=0.211 Sum_probs=86.8
Q ss_pred ceeeee--EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 74 LLHDIS--GQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 74 iL~~vs--~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
-|+.+- +=+++|+++.|.||+|+|||||+--++..... .| ..+.|+.-+...- +
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~---~G---------------~~vlyis~E~s~~------~ 425 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR---EG---------------KTCAFIDAEHALD------P 425 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH---TT---------------CCEEEECTTSCCC------H
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---hC---------------CCeEEEEccCchH------H
Confidence 466654 36899999999999999999998777653210 01 1234554332211 0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh--cCCCEEEEeCCCCCC
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII--HKPSLLFLDEPTSGL 229 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~--~~P~lLllDEPtsgL 229 (820)
+. .+.+|+.. .+-.+-+ .-++.| -+.+++.++ .+|+++++|..++=.
T Consensus 426 -~~-----------------------a~~lGvd~-~~L~i~~----~~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 426 -IY-----------------------ARKLGVDI-DNLLCSQ----PDTGEQ--ALEICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp -HH-----------------------HHHTTCCG-GGCEEEC----CSSHHH--HHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred -HH-----------------------HHHcCCCH-HHeEEcC----CCCHHH--HHHHHHHHHHhcCCCEEEECCHHHhh
Confidence 00 11222211 0001111 113333 234455554 579999999998866
Q ss_pred CH-------------HHHHHHHHHHHHH---Hh-CCcEEEEEEcCcc---------------HHHHhhcCEEEEEeCCeE
Q 003437 230 DS-------------TSAYSVVEKVKDI---AR-TGSIVLMTIHQPS---------------YRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 230 D~-------------~~~~~i~~~L~~l---~~-~g~tvi~~~H~~~---------------~~i~~~~D~v~lL~~G~i 277 (820)
.. ...+.+.+.+++| ++ .|.+||++.|-.. ..+..++|-++.|.+.+.
T Consensus 475 ~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~ 554 (1706)
T 3cmw_A 475 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccc
Confidence 41 1223445555555 33 5999999987421 246678999888887655
Q ss_pred EEEc
Q 003437 278 VYMG 281 (820)
Q Consensus 278 v~~G 281 (820)
+..|
T Consensus 555 ~~~g 558 (1706)
T 3cmw_A 555 VKEG 558 (1706)
T ss_dssp EEET
T ss_pred cccC
Confidence 4444
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.053 Score=59.20 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+..-+.|.||+|+|||||.++|+...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455568999999999999999999854
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.024 Score=55.40 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999766654
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.012 Score=57.68 Aligned_cols=26 Identities=23% Similarity=0.505 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999999999998643
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.01 Score=62.98 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDG 122 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G 122 (820)
.|.++.|.||||||||||.+.|+..+. .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~----~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ----GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT----TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC----CCeEEEec
Confidence 467999999999999999999987542 25566665
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.058 Score=70.67 Aligned_cols=153 Identities=16% Similarity=0.253 Sum_probs=86.3
Q ss_pred ceeeee--EEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 74 LLHDIS--GQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 74 iL~~vs--~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
-|+.+- +=+++|+++.|.||+|+|||||+.-++..... .| ..+.|+.-+...-+ ++
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~---~G---------------~~vlyis~E~s~~~---~~- 427 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR---EG---------------KTCAFIDAEHALDP---IY- 427 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT---TT---------------CCEEEECTTSCCCH---HH-
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHh---cC---------------CeEEEEEcCCCHHH---HH-
Confidence 455554 35899999999999999999998777653311 11 12234332221100 00
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHh--cCCCEEEEeCCCCCC
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDII--HKPSLLFLDEPTSGL 229 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~--~~P~lLllDEPtsgL 229 (820)
+ +.+|+.. .+-.+-+ ..+.. +-+.+++.++ .+|+++++|.-++-.
T Consensus 428 ----a----------------------~~lGvd~-~~L~I~~----~~~~e--~il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 428 ----A----------------------RKLGVDI-DNLLCSQ----PDTGE--QALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp ----H----------------------HHTTCCT-TTCEEEC----CSSHH--HHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ----H----------------------HHcCCCH-HHeEEeC----CCCHH--HHHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 1 1122210 0111211 12332 3445666664 479999999988755
Q ss_pred C-H------------HHHHHHHHHHHHH---Hh-CCcEEEEEEcCccH---------------HHHhhcCEEEEEeCCeE
Q 003437 230 D-S------------TSAYSVVEKVKDI---AR-TGSIVLMTIHQPSY---------------RIQMLLDRIIVLARGRL 277 (820)
Q Consensus 230 D-~------------~~~~~i~~~L~~l---~~-~g~tvi~~~H~~~~---------------~i~~~~D~v~lL~~G~i 277 (820)
. . ..++.+.+.|++| ++ .|.+||++.|-... .+...+|-++.|++...
T Consensus 475 ~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~ 554 (2050)
T 3cmu_A 475 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (2050)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEeccc
Confidence 2 1 1234456666666 44 58899998874221 35667899999887654
Q ss_pred EEEc
Q 003437 278 VYMG 281 (820)
Q Consensus 278 v~~G 281 (820)
...|
T Consensus 555 ~~~g 558 (2050)
T 3cmu_A 555 VKEG 558 (2050)
T ss_dssp EEET
T ss_pred ccCC
Confidence 4433
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.0064 Score=60.74 Aligned_cols=23 Identities=43% Similarity=0.787 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+++|.|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999865
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.013 Score=58.36 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999654
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.87 E-value=0.013 Score=57.77 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999973
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.014 Score=56.91 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
+.+++|.|++||||||+.+.|+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999864
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.013 Score=57.16 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.|.|++||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.012 Score=61.70 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.055 Score=54.81 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=42.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEc---------CccHHHHhhcCEEEEEe
Q 003437 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIH---------QPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 216 ~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~lL~ 273 (820)
+.+++++||--- ||.. +++.|+.++..|+.||++-+ .+...+..++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 578999999876 6643 34778888778999999999 67777888999988774
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.041 Score=51.66 Aligned_cols=42 Identities=7% Similarity=0.103 Sum_probs=29.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCc
Q 003437 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQP 258 (820)
Q Consensus 216 ~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 258 (820)
+..+|++||.- .|+...+..+.+.+.+....+..+|++++.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 35689999975 6788888888887776543456677777654
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.046 Score=61.76 Aligned_cols=54 Identities=9% Similarity=0.084 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCcc
Q 003437 202 GERRRVSIGIDIIHKPSLLFLDEP-TSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259 (820)
Q Consensus 202 GerqRv~ia~aL~~~P~lLllDEP-tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 259 (820)
.+.+....+...+.+++++|+... +.++.... ..+.+.|+ +.++.+|++.+..+
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~D 142 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKLD 142 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC-
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECcc
Confidence 366666677777788887655544 44555543 44555544 35788888887654
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=94.65 E-value=0.017 Score=56.56 Aligned_cols=24 Identities=17% Similarity=0.421 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+++|+|++|||||||++.|+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 378999999999999999998865
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.018 Score=58.00 Aligned_cols=26 Identities=38% Similarity=0.585 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+|-.+.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998754
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.014 Score=57.41 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998754
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.013 Score=56.84 Aligned_cols=26 Identities=38% Similarity=0.589 Sum_probs=18.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.016 Score=56.43 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-.++|+|++|+|||||++.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999854
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.017 Score=54.50 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999853
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.029 Score=61.54 Aligned_cols=38 Identities=29% Similarity=0.332 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC---------CCCCCceEEEECC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI---------AQGSLEGSVRIDG 122 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~---------~~~~~~G~I~i~G 122 (820)
|-.++|+|.+|+|||||++.|+|.. ...+..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 3468999999999999999999843 1124568887766
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.019 Score=54.62 Aligned_cols=23 Identities=26% Similarity=0.618 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999999853
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.43 E-value=0.02 Score=54.17 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999984
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.019 Score=56.83 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999854
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.016 Score=54.75 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999998754
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.021 Score=57.93 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999999644
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.02 Score=53.81 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.02 Score=53.69 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=94.31 E-value=0.019 Score=53.81 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998854
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.02 Score=53.80 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999753
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.022 Score=53.97 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998753
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=94.27 E-value=0.025 Score=56.01 Aligned_cols=26 Identities=35% Similarity=0.518 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+-+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998743
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=94.25 E-value=0.03 Score=60.10 Aligned_cols=36 Identities=33% Similarity=0.305 Sum_probs=31.2
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
...+++....+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 35788877777 8999999999999999999999873
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.022 Score=53.90 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999864
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.023 Score=56.87 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.022 Score=53.91 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999753
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.17 E-value=0.022 Score=53.71 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=94.16 E-value=0.021 Score=54.00 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37999999999999999999853
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.021 Score=54.62 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998853
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.023 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.025 Score=59.56 Aligned_cols=23 Identities=22% Similarity=0.590 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999953
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.023 Score=54.25 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.024 Score=54.30 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998854
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.026 Score=55.10 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.028 Score=53.97 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
=+.++|.|+.||||||+.+.|+..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998754
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.023 Score=54.55 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998754
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.022 Score=55.52 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~ 108 (820)
-.++|+|++|+|||||++.|.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999985
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.02 Score=55.57 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.027 Score=56.47 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998643
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.032 Score=53.33 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4578999999999999999998843
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.024 Score=54.24 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999853
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=94.01 E-value=0.023 Score=57.34 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+.++.|+|++||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999998744
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.024 Score=55.23 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998754
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.03 Score=53.50 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998743
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=93.95 E-value=0.024 Score=55.00 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999999854
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.029 Score=55.59 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998643
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.03 Score=58.24 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999975
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.027 Score=53.11 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999743
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.027 Score=54.76 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|+.|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999864
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.029 Score=54.55 Aligned_cols=25 Identities=20% Similarity=0.419 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998643
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.027 Score=54.27 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999999854
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.86 E-value=0.026 Score=54.63 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999999853
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.03 Score=53.45 Aligned_cols=23 Identities=17% Similarity=0.457 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47999999999999999999753
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.029 Score=53.18 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.45 Score=53.42 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.+++++|++|+||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999765
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.029 Score=54.75 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.029 Score=54.22 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=93.75 E-value=0.03 Score=52.72 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999874
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.035 Score=57.22 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
++-.++|.||+||||||+.+.|+-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999864
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=93.69 E-value=0.024 Score=62.68 Aligned_cols=36 Identities=28% Similarity=0.147 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEEC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRID 121 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~ 121 (820)
.+..++|+||||||||||++.|++.... ..+.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~--~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM--QGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH--CCCEEEEE
Confidence 5678999999999999999999986532 34666653
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.03 Score=53.41 Aligned_cols=23 Identities=13% Similarity=0.343 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=93.63 E-value=0.2 Score=51.26 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=43.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcC---------ccHHHHhhcCEEEEEe
Q 003437 215 HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQ---------PSYRIQMLLDRIIVLA 273 (820)
Q Consensus 215 ~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~---------~~~~i~~~~D~v~lL~ 273 (820)
.+.+++++||----.| +.++++.+++.|+.||++-++ +...+..++|.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999987754 666666667789999999999 7777888899988774
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.032 Score=53.56 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999999753
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.60 E-value=0.033 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998854
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.033 Score=53.08 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999854
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=93.56 E-value=0.033 Score=54.05 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47999999999999999999865
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.56 E-value=0.021 Score=55.03 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 003437 86 EIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G 107 (820)
-.++|+|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999875
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=93.55 E-value=0.036 Score=59.23 Aligned_cols=23 Identities=43% Similarity=0.655 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 59999999999999999999864
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.036 Score=57.25 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.034 Score=53.97 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999854
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.035 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999854
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=93.44 E-value=0.055 Score=54.21 Aligned_cols=34 Identities=35% Similarity=0.372 Sum_probs=27.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++..-.. ..|..++|+||+|+|||||...|+.+
T Consensus 24 ~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 24 SMHGVLVD-IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 55555444 46889999999999999999999874
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.04 Score=54.83 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
--+++|.|+.||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999864
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.03 Score=58.64 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||+|.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998753
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.035 Score=57.78 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999953
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.38 E-value=0.036 Score=55.24 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=93.37 E-value=0.035 Score=53.55 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.36 E-value=0.046 Score=52.48 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998764
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=93.35 E-value=0.04 Score=58.94 Aligned_cols=23 Identities=43% Similarity=0.657 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999964
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.037 Score=54.30 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.038 Score=54.34 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999854
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.042 Score=55.30 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
|-.+.|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999998744
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.043 Score=55.60 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.039 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.|.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999854
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.063 Score=58.14 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.++.|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999865
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.04 Score=53.63 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999854
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.24 E-value=0.038 Score=53.94 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 58999999999999999998843
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.039 Score=53.35 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.=.++|+|++|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998744
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=93.21 E-value=0.039 Score=57.00 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.19 E-value=0.031 Score=55.10 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999764
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.038 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999853
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.18 E-value=0.039 Score=53.96 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998854
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.042 Score=52.91 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999999753
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.043 Score=58.02 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
...+.|.||+|+|||||+++|++..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3689999999999999999999975
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=93.12 E-value=0.039 Score=60.69 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999985
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=93.12 E-value=0.043 Score=52.71 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.09 E-value=0.046 Score=53.72 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.049 Score=55.40 Aligned_cols=27 Identities=22% Similarity=0.539 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+..++.|+||+||||+|..+.|+-.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999998643
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=93.07 E-value=0.053 Score=51.91 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=93.05 E-value=0.045 Score=53.21 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.045 Score=57.75 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 003437 86 EIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G 107 (820)
-+++|.|++||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=93.00 E-value=0.047 Score=56.85 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999843
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=92.99 E-value=0.045 Score=53.78 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999974
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.043 Score=54.10 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999864
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.18 Score=66.14 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=30.7
Q ss_pred ceeeeeE--EEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 74 LLHDISG--QAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 74 iL~~vs~--~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-|+.+.+ -+++|+++.|.|++|+|||||+..++...
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~ 756 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4666664 69999999999999999999999888754
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=92.92 E-value=0.049 Score=54.60 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998643
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.043 Score=53.70 Aligned_cols=23 Identities=22% Similarity=0.586 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=92.91 E-value=0.048 Score=53.18 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.90 E-value=0.045 Score=53.40 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47999999999999999999854
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.045 Score=52.55 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999854
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=92.88 E-value=0.046 Score=57.36 Aligned_cols=23 Identities=26% Similarity=0.634 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|.+|+|||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999853
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=92.88 E-value=0.027 Score=56.32 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-.++|+|++|+|||||++.|.|..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999863
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=0.047 Score=53.64 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999999854
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=0.06 Score=54.83 Aligned_cols=26 Identities=38% Similarity=0.616 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.85 E-value=0.049 Score=53.76 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998743
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.85 E-value=0.049 Score=52.81 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999963
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=0.05 Score=52.99 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=92.83 E-value=0.05 Score=57.81 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|+.|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999964
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=92.82 E-value=0.046 Score=53.94 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.81 E-value=0.05 Score=52.75 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999854
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.81 E-value=0.05 Score=54.38 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998753
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.79 E-value=0.051 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999853
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.77 E-value=0.038 Score=53.77 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998854
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=92.76 E-value=0.051 Score=53.02 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.045 Score=56.03 Aligned_cols=28 Identities=36% Similarity=0.628 Sum_probs=21.7
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+|.++.|.|++||||||+++.|+..+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999998765
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.75 E-value=0.051 Score=53.67 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
=.++|+|++|+|||||++.|.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999999753
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.05 Score=54.97 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.|.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.052 Score=53.35 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
=.++|+|++|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999998753
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.046 Score=52.81 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999974
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=92.71 E-value=0.057 Score=57.02 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++.|+|++||||||+.+.|+-.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999863
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=92.70 E-value=0.05 Score=53.04 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998853
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=0.057 Score=53.70 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999853
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=0.064 Score=54.28 Aligned_cols=27 Identities=48% Similarity=0.720 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+|.+++|.|++||||||+++.|+..+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998765
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.67 E-value=0.05 Score=54.10 Aligned_cols=23 Identities=17% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999988753
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=92.66 E-value=0.029 Score=59.60 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=19.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+-+++|.||+||||||+.+.|+..+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998744
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=92.58 E-value=0.045 Score=52.38 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998743
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=92.56 E-value=0.055 Score=51.88 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998764
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.53 E-value=0.054 Score=53.68 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.47 E-value=0.063 Score=52.61 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
=.++|+|++|+|||||++.+.+..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998753
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.44 E-value=0.061 Score=52.41 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 58999999999999999988753
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=92.43 E-value=0.072 Score=60.22 Aligned_cols=35 Identities=23% Similarity=0.521 Sum_probs=29.2
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+++.+ ..+-+|+.++|+|++|+|||||++.|+...
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 55555 566789999999999999999999998753
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=92.39 E-value=0.069 Score=53.78 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.|+||+||||+|..+.|+-.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999743
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.36 E-value=0.062 Score=53.65 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999974
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=92.36 E-value=0.055 Score=56.88 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999964
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=92.36 E-value=0.063 Score=59.99 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
.+.+++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999999864
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.35 E-value=0.057 Score=53.75 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=92.35 E-value=0.071 Score=54.91 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+|.+++|.|++||||||+++.|+..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998765
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=92.34 E-value=0.066 Score=58.10 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 379999999999999999999865
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.28 E-value=0.089 Score=53.36 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=31.9
Q ss_pred hcCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCc
Q 003437 214 IHKPSLLFLDEPTS----GLDSTSAYSVVEKVKDIART-GSIVLMTIHQP 258 (820)
Q Consensus 214 ~~~P~lLllDEPts----gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~ 258 (820)
-.+|+++++|--+. .-|.....+++..|+.++++ |.+++++.|..
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~ 182 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 35788888886432 12445566778888888764 99999998864
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=92.27 E-value=0.064 Score=53.23 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998743
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=92.20 E-value=0.044 Score=52.76 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=9.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=92.18 E-value=0.06 Score=53.89 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999999854
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=92.14 E-value=0.063 Score=52.90 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999853
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=92.10 E-value=0.081 Score=56.72 Aligned_cols=25 Identities=36% Similarity=0.606 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+.+++|+||+|||||||.+.|+-..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999999754
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=92.08 E-value=0.06 Score=52.79 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 003437 86 EIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G 107 (820)
=.++|+|++|+|||||++.+.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999976
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=92.08 E-value=0.068 Score=55.52 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=92.00 E-value=0.089 Score=52.32 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=29.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCcc
Q 003437 215 HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259 (820)
Q Consensus 215 ~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 259 (820)
.+|.+|++||.-. ||......+.+.+.+. ..+..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 3578999999766 7877766666655432 23567888887764
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=91.96 E-value=0.12 Score=50.53 Aligned_cols=33 Identities=27% Similarity=0.148 Sum_probs=25.9
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
.++.. +.--.|.-++|.|+||+|||||...|..
T Consensus 6 ~lHas-~v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHAN-FLVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESE-EEEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEE-EEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34443 3444688999999999999999988876
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=91.92 E-value=0.071 Score=55.59 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=91.91 E-value=0.081 Score=57.01 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999865
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=91.91 E-value=0.088 Score=53.27 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+|.++.+-|++||||||+++.|+..+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998765
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.89 E-value=0.072 Score=51.87 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999753
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=91.88 E-value=0.087 Score=53.47 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRIA 110 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~~ 110 (820)
+|.++.+.|++||||||+++.|+..+.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999998763
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.84 E-value=0.083 Score=53.18 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=91.76 E-value=0.09 Score=53.74 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
|.+++|-|+.||||||+.+.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 6789999999999999999999865
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=91.70 E-value=0.042 Score=54.73 Aligned_cols=22 Identities=23% Similarity=0.640 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.|.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=91.61 E-value=0.1 Score=53.28 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+|.+++|.|++||||||+.+.|+..+
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998765
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=91.58 E-value=0.068 Score=55.47 Aligned_cols=27 Identities=37% Similarity=0.434 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998765
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=91.57 E-value=0.21 Score=56.74 Aligned_cols=71 Identities=23% Similarity=0.297 Sum_probs=53.6
Q ss_pred CCCCChHHHHHHHHHHHH--hc---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCc
Q 003437 196 RRGVSGGERRRVSIGIDI--IH---------------KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQP 258 (820)
Q Consensus 196 ~~~LSGGerqRv~ia~aL--~~---------------~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 258 (820)
..++||||+|-.-+|++. +. .=+++++||. +-+|.......+++++++ |.=+|+++-.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 347999999975444433 22 1257999999 999999999999999977 6667777765
Q ss_pred cHHHHhhcCEEEEEe
Q 003437 259 SYRIQMLLDRIIVLA 273 (820)
Q Consensus 259 ~~~i~~~~D~v~lL~ 273 (820)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 2566788888775
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.52 E-value=0.088 Score=52.82 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.49 E-value=0.084 Score=52.12 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 48999999999999999998743
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=91.39 E-value=0.091 Score=52.64 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~ 108 (820)
-.++|+|.+|+|||||++-+++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999998874
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=91.35 E-value=0.097 Score=54.69 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-.++++|.+|+|||||+|.|.|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 478999999999999999999965
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=91.31 E-value=0.044 Score=53.77 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=4.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=91.27 E-value=0.061 Score=52.18 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 003437 87 IMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G 107 (820)
.++|+|++|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999865
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=91.16 E-value=0.034 Score=59.78 Aligned_cols=42 Identities=7% Similarity=0.145 Sum_probs=31.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCcc
Q 003437 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259 (820)
Q Consensus 216 ~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 259 (820)
+++++++|| ...|+......+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999888888777776533 345666776664
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=91.11 E-value=0.095 Score=51.86 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~ 108 (820)
=.++|+|++|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=90.98 E-value=0.11 Score=52.04 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=90.95 E-value=0.1 Score=51.69 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998743
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.90 E-value=0.12 Score=48.42 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=28.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCcc
Q 003437 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259 (820)
Q Consensus 216 ~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 259 (820)
+..+|++||.- .|++..+..+.+.|... ..+..+|+++..+.
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~ 117 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSL 117 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCH
Confidence 34679999985 68888888888877322 22456777776653
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=90.83 E-value=0.13 Score=55.09 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+++|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3579999999999999999999754
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=90.64 E-value=0.14 Score=50.35 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=29.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCc
Q 003437 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQP 258 (820)
Q Consensus 216 ~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 258 (820)
+++++++||--- +|+ .+++.|+.++++|..||++-++.
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~ 113 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDL 113 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESB
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeecc
Confidence 578999999754 543 36677888887799999988854
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=90.43 E-value=0.14 Score=55.06 Aligned_cols=33 Identities=18% Similarity=0.466 Sum_probs=27.5
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 75 L~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
|+.+-+-+.+|..+.|.||+|+|||||...++.
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 333336788999999999999999999999875
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=90.42 E-value=0.14 Score=56.88 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+++|+||+|||||||.+.|+-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999999754
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=90.35 E-value=0.15 Score=53.86 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.-+.|.||+|+|||||.+.|+..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999998765
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=90.24 E-value=0.14 Score=50.20 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+.|.||+|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998754
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=90.15 E-value=0.072 Score=55.10 Aligned_cols=22 Identities=36% Similarity=0.768 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 003437 88 MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~~ 109 (820)
+.|.||+|+|||||+++|+...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999999999854
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=90.09 E-value=0.16 Score=51.98 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-.+||+|++||||||+.+.|+-.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998643
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=89.83 E-value=0.61 Score=56.05 Aligned_cols=23 Identities=39% Similarity=0.706 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+.+.||+|+|||+|.++|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999864
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.70 E-value=0.2 Score=55.06 Aligned_cols=39 Identities=28% Similarity=0.511 Sum_probs=30.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC---------CCCceEEEECCEeC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRIAQ---------GSLEGSVRIDGKPV 125 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~~~---------~~~~G~I~i~G~~~ 125 (820)
-+||+|.+-+|||||+|.|+|.... .+..|.+.++|..+
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i 121 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI 121 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence 5899999999999999999996421 12457777777654
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=89.58 E-value=0.18 Score=53.21 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-.++|+|.+|+|||||+|.|.|..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ceEEEEecCCCchHHHHHHHhcCc
Confidence 468999999999999999999964
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=89.43 E-value=0.17 Score=53.48 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-..+.|.||+|+|||+|.++|+..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467888999999999999999854
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=89.42 E-value=0.16 Score=56.33 Aligned_cols=78 Identities=18% Similarity=0.236 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEE---eCCCCCCCHHHHHHHHHHHHHHHhCC
Q 003437 172 KRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFL---DEPTSGLDSTSAYSVVEKVKDIARTG 248 (820)
Q Consensus 172 ~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLll---DEPtsgLD~~~~~~i~~~L~~l~~~g 248 (820)
+.+.++++.++.... . ..+|.+|.+++.-...+...|-++++ |.+ + ...+.++.+.+...+
T Consensus 180 ~~~~~~l~~l~~~~~----~-----~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~----~---~~~l~~l~~~~~~~~ 243 (397)
T 1wxq_A 180 NDVWEAMHKLNLPED----P-----TKWSQDDLLAFASEIRRVNKPMVIAANKADAA----S---DEQIKRLVREEEKRG 243 (397)
T ss_dssp HHHHHHHHHTTCCSC----G-----GGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS----C---HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCc----c-----ccCCHHHHHHHHHhhhccCCCEEEEEeCcccc----c---hHHHHHHHHHHhhcC
Confidence 346677777776543 1 14899998888777777778998887 544 1 122323233333346
Q ss_pred cEEEEEEcCccHHHHhh
Q 003437 249 SIVLMTIHQPSYRIQML 265 (820)
Q Consensus 249 ~tvi~~~H~~~~~i~~~ 265 (820)
..+|.++=.....+.++
T Consensus 244 ~~vv~iSA~~e~~l~~L 260 (397)
T 1wxq_A 244 YIVIPTSAAAELTLRKA 260 (397)
T ss_dssp CEEEEECHHHHHHHHSC
T ss_pred CcEEEEeccchhhHHHH
Confidence 56666665444445443
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=89.39 E-value=0.2 Score=53.42 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+.-+.|.||+|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6889999999999999999999754
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=89.39 E-value=0.18 Score=54.48 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+|..+.|.||+|+|||||++.++..+
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999865
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=89.33 E-value=0.18 Score=54.95 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..-.++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998764
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=89.31 E-value=0.18 Score=52.41 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
.+...+.|.||+|+|||||.+.|+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34457899999999999999999975
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=89.26 E-value=0.33 Score=54.43 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|.+++|||||+|.|+|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=89.24 E-value=0.12 Score=56.21 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=89.24 E-value=0.21 Score=53.52 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+..-+.|.||+|+|||+|+++|+...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 355679999999999999999999753
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.85 E-value=0.072 Score=52.49 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 003437 87 IMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G 107 (820)
.++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999998875
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=89.18 E-value=0.13 Score=51.27 Aligned_cols=22 Identities=36% Similarity=0.800 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHH-HHcC
Q 003437 87 IMAIMGPSGAGKSTFLDA-LAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~-L~G~ 108 (820)
.++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999998 6554
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=89.09 E-value=0.16 Score=56.92 Aligned_cols=22 Identities=41% Similarity=0.767 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=88.98 E-value=0.2 Score=53.45 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~ 108 (820)
-.++|+|++|+|||||++.+.+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999998875
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=88.92 E-value=0.2 Score=52.58 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+.-+.|.||+|+|||||++.|+..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999865
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=88.61 E-value=0.21 Score=54.34 Aligned_cols=26 Identities=27% Similarity=0.583 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.-+.|.||+|+||||+.++|+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 35568999999999999999999865
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 820 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-44 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 5e-44 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-40 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-40 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 5e-40 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-39 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-38 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 4e-38 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 6e-37 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 5e-36 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-35 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-35 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-35 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 8e-35 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 6e-34 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-33 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-32 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-32 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-32 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-29 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 4e-13 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-07 | |
| d1yrba1 | 244 | c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09 | 2e-04 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 0.002 | |
| d1s96a_ | 205 | c.37.1.1 (A:) Guanylate kinase {Escherichia coli [ | 0.002 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.004 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 156 bits (397), Expect = 5e-44
Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 16/220 (7%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT-SYMKMV 133
++ ++ GE + ++GPSG GK+T L +AG G + + VT
Sbjct: 22 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE--GRIYFGDRDVTYLPPKDRN 79
Query: 134 SSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGN 193
S V Q ++P +TV+E F +++ +DE KRV + L + + Y
Sbjct: 80 ISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPAQ 136
Query: 194 EGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA-RTGSIVL 252
+SGG+R+RV++ I+ +P +L +DEP S LD+ ++ ++K + + +
Sbjct: 137 -----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 191
Query: 253 MTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL---PAH 289
H + DRI V+ RG+L+ +GSP + P
Sbjct: 192 YVTHDQVE-AMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 230
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 156 bits (396), Expect = 5e-44
Identities = 58/244 (23%), Positives = 106/244 (43%), Gaps = 24/244 (9%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
++ KN++ + ++ L +++ GE ++IMGPSG+GKST L+ +
Sbjct: 2 IKLKNVTKTYKMGEEIIYA--------LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC 53
Query: 108 RIAQGSLEGSVRIDGKPVT-------TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVR 160
G V ID T + +V Q L P+LT E +
Sbjct: 54 LDKPTE--GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK 111
Query: 161 LPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLL 220
++S +E++KR E L L + N+ +SGG+++RV+I + + P ++
Sbjct: 112 YRGAMSGEERRKRALECLKMAELEERFANHKPNQ----LSGGQQQRVAIARALANNPPII 167
Query: 221 FLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279
D+PT LDS + +++ +K + G V++ H + + +RII L G +
Sbjct: 168 LADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVER 225
Query: 280 MGSP 283
Sbjct: 226 EEKL 229
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 146 bits (371), Expect = 2e-40
Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 29/252 (11%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
++ N++ + T+ L+++S G+I ++G SGAGKST + +
Sbjct: 2 IKLSNITKVFHQG--------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 53
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVS------SYVMQDDQLFPMLTVFETFMFAAEVRL 161
GSV +DG+ +TT ++ + Q L TVF E+
Sbjct: 54 LERPTE--GSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD- 110
Query: 162 PPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLF 221
+ +DE K+RV ELL +GL +Y N +SGG+++RV+I + P +L
Sbjct: 111 --NTPKDEVKRRVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLL 163
Query: 222 LDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280
DE TS LD + S++E +KDI R G +L+ H+ ++ + D + V++ G L+
Sbjct: 164 CDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDV-VKRICDCVAVISNGELIEQ 222
Query: 281 GSPVAL---PAH 289
+ + P
Sbjct: 223 DTVSEVFSHPKT 234
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 147 bits (371), Expect = 2e-40
Identities = 46/231 (19%), Positives = 94/231 (40%), Gaps = 22/231 (9%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYM---- 130
L +S +G++ I+GP+G+GKST ++ + G + G V + K +T
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE--GRVYFENKDITNKEPAELY 77
Query: 131 KMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSI----------SRDEKKKRVYELLDQ 180
Q Q +TV E + + +E ++ +++L+
Sbjct: 78 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 137
Query: 181 LGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK 240
L L G +SGG+ + V IG ++ P ++ +DEP +G+ A+ +
Sbjct: 138 LKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 192
Query: 241 VKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLA 291
V ++ G L+ H+ + +D + V+ G+++ G ++
Sbjct: 193 VLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEEEIKNVL 242
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 146 bits (369), Expect = 5e-40
Identities = 61/262 (23%), Positives = 114/262 (43%), Gaps = 42/262 (16%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
L +L + +L +S QA G++++I+G SG+GKSTFL +
Sbjct: 3 LHVIDLHKRYGGHE------------VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF 50
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVS----------------SYVMQDDQLFPMLTVFE 151
G++ ++G+ + K + V Q L+ +TV E
Sbjct: 51 LEKPSE--GAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE 108
Query: 152 TFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-RSATHTYIGNEGRRGVSGGERRRVSIG 210
M A L +S+ + ++R + L ++G+ A Y + +SGG+++RVSI
Sbjct: 109 NVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQGKYPVH-----LSGGQQQRVSIA 161
Query: 211 IDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRII 270
+ +P +L DEPTS LD V+ ++ +A G +++ H+ + + + +I
Sbjct: 162 RALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF-ARHVSSHVI 220
Query: 271 VLARGRLVYMGSPVAL---PAH 289
L +G++ G P + P
Sbjct: 221 FLHQGKIEEEGDPEQVFGNPQS 242
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 145 bits (366), Expect = 3e-39
Identities = 46/212 (21%), Positives = 81/212 (38%), Gaps = 19/212 (8%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVS 134
L +I+ +GE++AI G +G+GK++ L + G + G ++ G+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE--GIIKHSGRV---------- 99
Query: 135 SYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNE 194
S+ Q + P T+ E +F K D +T +G E
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMT 254
G +SGG+R R+S+ + L LD P LD + V E ++
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 255 IHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286
+ D+I++L +G + G+ L
Sbjct: 215 TSKME--HLRKADKILILHQGSSYFYGTFSEL 244
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 140 bits (354), Expect = 3e-38
Identities = 69/267 (25%), Positives = 115/267 (43%), Gaps = 33/267 (12%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+ K+L I KK+ +L IS + GEI ++GP+GAGK+T L ++
Sbjct: 3 VVVKDLRKRIGKKE------------ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST 50
Query: 108 RIAQGSLEGSVRIDGKPVTTS--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSI 165
I S G V + GK V ++ + SY+ ++ + + E F A +
Sbjct: 51 LIKPSS--GIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---AS 105
Query: 166 SRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEP 225
S E ++ V + GL + S G R++ I ++ P L LDEP
Sbjct: 106 SSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEP 160
Query: 226 TSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285
TSGLD +A V + +K ++ G +L++ H ++ L DRI ++ G +V G+
Sbjct: 161 TSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEE 219
Query: 286 LPAHLAGFGRTVPDGENSLEYLLDVIK 312
L +N E +V+K
Sbjct: 220 LKER--------YKAQNIEEVFEEVVK 238
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 140 bits (355), Expect = 4e-38
Identities = 62/260 (23%), Positives = 116/260 (44%), Gaps = 26/260 (10%)
Query: 31 KDAVVAAAGLKMIPGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAI 90
K+ V A +++ G ++ ++S+ + EA +L DI+ +GE +A
Sbjct: 2 KNGV-GAQPIEIKQGR-IDIDHVSFQ----------YNDNEAPILKDINLSIEKGETVAF 49
Query: 91 MGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVM--QDDQLFPMLT 148
+G SG GKST ++ + S G + IDG + + + + Q D + T
Sbjct: 50 VGMSGGGKSTLINLIPRFYDVTS--GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDT 107
Query: 149 VFETFMFAAEVRLPPSISRDEKKKRVYELLDQL--GLRSATHTYIGNEGRRGVSGGERRR 206
V E + + K ++ + L G T +G G + +SGG+++R
Sbjct: 108 VKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGY----DTEVGERGVK-LSGGQKQR 162
Query: 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLL 266
+SI ++ P +L LDE TS LD S + E + +++ + +++ H+ S
Sbjct: 163 LSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVA-HRLS--TITHA 219
Query: 267 DRIIVLARGRLVYMGSPVAL 286
D+I+V+ G +V G+ L
Sbjct: 220 DKIVVIENGHIVETGTHREL 239
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 137 bits (346), Expect = 6e-37
Identities = 56/244 (22%), Positives = 109/244 (44%), Gaps = 25/244 (10%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
LEF+N++++ + +E L +I+ + G+ +A++G SG+GKST +
Sbjct: 14 LEFRNVTFT----------YPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR 63
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMV---SSYVMQDDQLFPMLTVFETFMFAAEVRLPPS 164
EG + +DG + + + + V Q+ LF E
Sbjct: 64 FYDID--EGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQ 121
Query: 165 ISRDEKKKRVYELLDQL--GLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFL 222
I + + ++++ GL T IG G +SGG+R+R++I ++ +L L
Sbjct: 122 IEEAARMAYAMDFINKMDNGL----DTIIGENGVL-LSGGQRQRIAIARALLRDSPILIL 176
Query: 223 DEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGS 282
DE TS LD+ S ++ + ++ + + +++ H+ S D I+V+ G +V G+
Sbjct: 177 DEATSALDTESERAIQAALDELQKNRTSLVIA-HRLS--TIEQADEIVVVEDGIIVERGT 233
Query: 283 PVAL 286
L
Sbjct: 234 HSEL 237
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 134 bits (338), Expect = 5e-36
Identities = 57/248 (22%), Positives = 110/248 (44%), Gaps = 22/248 (8%)
Query: 49 EFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108
F+N+ + + +L +I+ +GE++ I+G SG+GKST +
Sbjct: 3 TFRNIRFR----------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 52
Query: 109 IAQGSLEGSVRIDGKPVTTSYMKMVS---SYVMQDDQLFPMLTVFETFMFAAEVRLPPSI 165
+ + V IDG + + + V+QD+ L ++ + A +
Sbjct: 53 YIPENGQ--VLIDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKV 109
Query: 166 SRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEP 225
K ++ + +L +T +G +G +SGG+R+R++I +++ P +L DE
Sbjct: 110 IYAAKLAGAHDFISELREG--YNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEA 166
Query: 226 TSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285
TS LD S + ++ + I + G V++ H+ S DRIIV+ +G++V G
Sbjct: 167 TSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKE 223
Query: 286 LPAHLAGF 293
L +
Sbjct: 224 LLSEPESL 231
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 133 bits (336), Expect = 1e-35
Identities = 57/239 (23%), Positives = 103/239 (43%), Gaps = 25/239 (10%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
LE ++L + I + RG+I+ ++G +GAGK+T L A+AG
Sbjct: 7 LEVQSLHVYYGAIH------------AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG 54
Query: 108 --RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSI 165
R +G + + + +M + V + ++FP LTV+E M A R
Sbjct: 55 LVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD--- 111
Query: 166 SRDEKKKRVYELLDQL-GLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224
++ K+ + + L+ G +SGGE++ ++IG ++ +P LL +DE
Sbjct: 112 -KEGIKRDLEWIFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDE 165
Query: 225 PTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
P+ GL V E ++ I + G+ +L+ + VL G++V G
Sbjct: 166 PSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKA 223
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 132 bits (334), Expect = 1e-35
Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 24/232 (10%)
Query: 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT-------T 127
+ ++S + GE M ++GPSG GK+T L +AG + + I K V
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ--IYIGDKLVADPEKGIFV 76
Query: 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
+ V Q L+P +TV++ F ++R + R E +RV E+ + LGL
Sbjct: 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELL 133
Query: 188 HTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIA-R 246
+ +SGG+R+RV++G I+ KP + +DEP S LD+ + ++K + +
Sbjct: 134 NRKPRE-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ 188
Query: 247 TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL---PAHL--AGF 293
G + H + DRI V+ RG L +GSP + PA+ AGF
Sbjct: 189 LGVTTIYVTHDQVE-AMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGF 239
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 133 bits (335), Expect = 2e-35
Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 20/243 (8%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
++F+++S++ + + +L ++ GE+ A++GP+G+GKST L
Sbjct: 12 VQFQDVSFAYPNR---------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN 62
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVS---SYVMQDDQLFPMLTVFETFMFAAEVRLPPS 164
+ + +DGKP+ + + + V Q+ Q+F +
Sbjct: 63 LYQPTGGQ--LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEE 120
Query: 165 ISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDE 224
I+ K + + L T + G + +SGG+R+ V++ +I KP +L LD+
Sbjct: 121 ITAAAVKSGAHSFISGLPQG--YDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDD 177
Query: 225 PTSGLDSTSAYSVVEKVKDIA-RTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
TS LD+ S V + + + R VL+ S + D I+ L G + G+
Sbjct: 178 ATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEGGAIREGGTH 235
Query: 284 VAL 286
L
Sbjct: 236 QQL 238
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 130 bits (328), Expect = 8e-35
Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 27/223 (12%)
Query: 71 EAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT--- 127
E+ L +SG+ GEI+ ++GP+GAGKST L +AG + +GS++ G+P+
Sbjct: 11 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSA 67
Query: 128 SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSAT 187
+ + + +Y+ Q V+ + + + + ++ L L
Sbjct: 68 TKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKL 119
Query: 188 HTYIGNEGRRGVSGGERRRVSIGIDIIH-------KPSLLFLDEPTSGLDSTSAYSVVEK 240
+SGGE +RV + ++ LL LDEP + LD ++ +
Sbjct: 120 GRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI 174
Query: 241 VKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
+ + + G ++M+ H ++ R +L G+++ G
Sbjct: 175 LSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKGGKMLASGRR 216
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 128 bits (322), Expect = 6e-34
Identities = 64/246 (26%), Positives = 109/246 (44%), Gaps = 28/246 (11%)
Query: 49 EFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGR 108
+ +N++ + + + DI+ GE + +GPSG GKST L +AG
Sbjct: 2 QLQNVTKAWGEVV------------VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL 49
Query: 109 IAQGSLEGSVRIDGKPVT-TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISR 167
S + + I K + T + V Q L+P L+V E F ++ +
Sbjct: 50 ETITSGD--LFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKK 104
Query: 168 DEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTS 227
+ +RV ++ + L L +SGG+R+RV+IG ++ +PS+ LDEP S
Sbjct: 105 EVINQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEPSVFLLDEPLS 159
Query: 228 GLDSTSAYSVVEKVKDIA-RTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286
LD+ + ++ + R G ++ H L D+I+VL GR+ +G P+ L
Sbjct: 160 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE-AMTLADKIVVLDAGRVAQVGKPLEL 218
Query: 287 ---PAH 289
PA
Sbjct: 219 YHYPAD 224
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 127 bits (320), Expect = 1e-33
Identities = 54/243 (22%), Positives = 102/243 (41%), Gaps = 24/243 (9%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
L +++ ++ ++ +L DIS +A I+A GPSG GKST L
Sbjct: 2 LSARHVDFAYDDSEQ-----------ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLER 50
Query: 108 RIAQGSLEGSVRIDGKPVTT----SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPP 163
+ G + IDG+P+ ++ + +V QD +
Sbjct: 51 FYQPTA--GEITIDGQPIDNISLENWRSQIG-FVSQDSAIMAGTIRENLTYGLEGDYTDE 107
Query: 164 SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLD 223
+ + ++ + + +T +G G + +SGG+R+R++I + P +L LD
Sbjct: 108 DLWQVLDLAFARSFVENMPDQ--LNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLD 164
Query: 224 EPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSP 283
E T+ LDS S V + + + + G L+ H+ S + D+I + +G++ G
Sbjct: 165 EATASLDSESESMVQKALDSLMK-GRTTLVIAHRLSTIVDA--DKIYFIEKGQITGSGKH 221
Query: 284 VAL 286
L
Sbjct: 222 NEL 224
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 121 bits (306), Expect = 3e-32
Identities = 42/228 (18%), Positives = 92/228 (40%), Gaps = 34/228 (14%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
LE ++LS K +L I+ +G ++ GP+G GK+T L ++
Sbjct: 3 LEIRDLSVGYDKP-------------VLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST 49
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISR 167
+ L+G + +G P+T K+ ++ ++ + ++V + A +
Sbjct: 50 YLKP--LKGEIIYNGVPITKVKGKI--FFLPEEIIVPRKISVEDYLKAVASLY-----GV 100
Query: 168 DEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTS 227
K + + L+ + + +S G RRV + ++ + LD+P
Sbjct: 101 KVNKNEIMDALESVEVLDLKKKL------GELSQGTIRRVQLASTLLVNAEIYVLDDPVV 154
Query: 228 GLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLAR 274
+D S + V++ + +I + G +++ + + SY D L +
Sbjct: 155 AIDEDSKHKVLKSILEILKEKGIVIISSREELSY-----CDVNENLHK 197
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 122 bits (307), Expect = 6e-32
Identities = 78/258 (30%), Positives = 123/258 (47%), Gaps = 33/258 (12%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+ KN+S K K G + L +++ GE I+GPSGAGK+TF+ +AG
Sbjct: 4 IIVKNVS-----KVFKKG-----KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG 53
Query: 108 RIAQGSLEGSVRIDGKPVTTSYMKMVS------SYVMQDDQLFPMLTVFETFMFAAEVRL 161
+ G + D + V ++ +V V Q L+P LT FE F
Sbjct: 54 LDVPST--GELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM- 110
Query: 162 PPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLF 221
+S++E +KRV E+ L + + + R +SG +++RV++ ++ PSLL
Sbjct: 111 --KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLLL 163
Query: 222 LDEPTSGLDSTSAYSVVEKVKDIA-RTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280
LDEP S LD+ S VK++ R G +L+ H P+ I + DR+ VL +G+LV +
Sbjct: 164 LDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQV 222
Query: 281 GSPVAL---PAHL--AGF 293
G P L P + A
Sbjct: 223 GKPEDLYDNPVSIQVASL 240
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 122 bits (306), Expect = 7e-32
Identities = 63/246 (25%), Positives = 113/246 (45%), Gaps = 30/246 (12%)
Query: 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107
+E ++LS ++ K+ L ++S + GE I+GP+GAGK+ FL+ +AG
Sbjct: 2 IEIESLS-----RKWKNFS--------LDNLSLKVESGEYFVILGPTGAGKTLFLELIAG 48
Query: 108 RIAQGSLEGSVRIDGKPVTTSY-MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSIS 166
S + +DGK VT K ++V Q+ LFP + V + F +
Sbjct: 49 FHVPDSGR--ILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEF------GMRMK 100
Query: 167 RDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPT 226
+ + KRV + L + +SGGE++RV++ ++ P +L LDEP
Sbjct: 101 KIKDPKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPL 155
Query: 227 SGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVAL 286
S LD + + E + + + + ++ I +++ DRI V+ G+L+ +G P +
Sbjct: 156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
Query: 287 ---PAH 289
P
Sbjct: 216 FEKPVE 221
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 114 bits (286), Expect = 3e-29
Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%)
Query: 83 IRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT-SYMKMVSSYVMQDD 141
+ + ++GP+GAGKS FL+ +AG + G VR++G +T + +V QD
Sbjct: 22 MGRDYCVLLGPTGAGKSVFLELIAGIVKPDR--GEVRLNGADITPLPPERRGIGFVPQDY 79
Query: 142 QLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSG 201
LFP L+V+ + ++ R E+ +RV E+ ++LG+ +SG
Sbjct: 80 ALFPHLSVYRNIAYG-----LRNVERVERDRRVREMAEKLGIAHLLDRKPAR-----LSG 129
Query: 202 GERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSY 260
GER+RV++ ++ +P LL LDEP S +D + ++E+++ + R +L H
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189
Query: 261 RIQMLLDRIIVLARGRLVYMGSPVAL 286
ML D + V+ GR+V G L
Sbjct: 190 -AAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 66.2 bits (160), Expect = 4e-13
Identities = 17/193 (8%), Positives = 43/193 (22%), Gaps = 35/193 (18%)
Query: 89 AIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLT 148
I G G GK+T + + R+ + + + +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRA--IGFWTEEVRDP--------ETKKRTGFRIITTE 53
Query: 149 VFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVS 208
+ + + + +E +
Sbjct: 54 GKKKIFSSKFFTSKKLVGSYGVNVQYFEE----------------------LAIPILERA 91
Query: 209 IGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDR 268
+ ++ +DE + + + V+ TI + L+
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELFSK-KFRDLVRQIMHDPNVNVVATIPIRD--VHPLVKE 148
Query: 269 IIVLARGRLVYMG 281
I L L+ +
Sbjct: 149 IRRLPGAVLIELT 161
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Score = 41.5 bits (96), Expect = 2e-04
Identities = 30/245 (12%), Positives = 63/245 (25%), Gaps = 23/245 (9%)
Query: 87 IMAIMGPSGAGKSTFLDAL-----AGRIAQG-SLEGSVRIDGKPVTTSYMKMVS-SYVMQ 139
I+ +G +G+GK+T +L+ V+ + + V+ +M+
Sbjct: 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMR 61
Query: 140 DDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199
+ V + + +K+ Y L+D G R +
Sbjct: 62 EGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLID--TPGQMETFLFHEFGVRLM 119
Query: 200 SGGERRRV------SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLM 253
V I + F + + KV ++
Sbjct: 120 ENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHR 179
Query: 254 TIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPAHLAGFGRTVP----DGENSLEYLLD 309
+ + L + M S + + R + E E L
Sbjct: 180 KYFEDIDYLTARLKLDPSMQGLMAYKMCS---MMTEVLPPVRVLYLSAKTREG-FEDLET 235
Query: 310 VIKEY 314
+ E+
Sbjct: 236 LAYEH 240
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 38.9 bits (89), Expect = 0.002
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 83 IRGEIMAIMGPSGAGKSTFLDALAGRIAQGS--LEGSVRIDGKPVTTSYMKMVSSYVMQD 140
+ G + A++ P GAGKS LA +IA G LE G + ++ +
Sbjct: 27 VAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRL 86
Query: 141 DQLFPMLTVFETFMFAAEVRLPPSIS 166
L L+ E A + + P I
Sbjct: 87 HALGAHLSAEERQAVADGLLIQPLIG 112
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Score = 37.9 bits (87), Expect = 0.002
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 85 GEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVR-IDGKPVTTSYMKMVSSYVMQDDQL 143
G + + PSGAGKS+ + AL + SV +P +V D+
Sbjct: 2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDE-- 59
Query: 144 FPMLTVFETFMFAAEV 159
F + + F+ AEV
Sbjct: 60 FKEMISRDAFLEHAEV 75
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.2 bits (87), Expect = 0.004
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 197 RGVSGGERRRVSIGIDI----IHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVL 252
+SGGE+ ++ + LDE + LD T+ + ++ +
Sbjct: 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 390
Query: 253 MTIHQP 258
+ +
Sbjct: 391 VISLKN 396
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 820 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.8 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.53 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.1 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.01 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.68 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.64 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.99 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.86 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.37 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.15 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.0 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.9 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.75 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.75 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.74 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.69 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.56 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.52 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.47 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.45 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.37 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.35 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.33 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.19 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.18 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.16 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.13 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.12 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.07 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.99 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.99 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.96 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.89 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.87 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.87 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.84 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.77 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.76 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.54 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.54 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.49 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.48 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.46 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.46 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.46 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.39 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.32 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.28 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.28 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.25 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.24 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.21 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.21 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.19 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.16 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.14 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.13 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.09 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.08 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.03 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.03 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.0 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.97 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.96 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.95 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.94 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.82 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.65 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.64 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.62 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.62 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.62 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.58 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.52 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.47 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.44 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.4 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.3 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.26 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.18 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.17 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.16 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 94.12 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.11 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.08 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.02 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.99 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.97 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.88 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.81 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 93.75 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.64 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.47 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.43 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.29 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.29 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.18 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.12 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.11 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.08 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.07 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.07 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.04 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.04 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.03 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.02 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.01 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 92.99 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 92.93 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.72 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.67 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.64 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 92.63 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 92.58 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 92.47 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.43 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.38 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.37 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.35 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 92.34 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.31 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 92.3 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.28 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 92.12 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.04 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.03 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.03 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.01 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 91.98 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.96 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.93 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.91 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.87 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.85 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 91.81 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 91.73 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.69 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 91.58 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 91.51 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 91.45 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 91.42 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 91.42 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 91.28 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.26 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.25 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.19 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 91.1 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 91.03 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 90.99 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 90.94 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.85 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.84 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 90.77 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 90.64 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 90.63 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 90.61 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 90.61 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 90.54 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 90.52 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 90.5 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 90.49 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.46 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 90.32 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 90.21 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 90.2 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 90.19 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.14 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 90.09 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 90.05 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 90.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 89.83 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 89.66 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.63 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.6 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 89.6 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.41 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 89.31 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 89.08 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 88.98 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.86 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 88.8 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 88.72 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 88.43 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 88.39 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 88.3 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 88.27 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.09 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 88.02 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 87.92 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.35 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 86.52 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.41 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 86.31 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.27 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 85.46 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.26 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.05 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 84.96 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 84.69 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 84.67 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 84.46 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 84.37 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 84.15 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 84.03 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 84.0 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 83.88 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 81.49 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 81.47 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 81.05 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 80.85 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 80.77 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 80.46 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.8e-54 Score=445.76 Aligned_cols=219 Identities=27% Similarity=0.452 Sum_probs=193.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 6 ~I~v~nlsk~yg~------------~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~ 71 (239)
T d1v43a3 6 EVKLENLTKRFGN------------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVT 71 (239)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred eEEEEEEEEEECC------------EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCCEEEEcceecc
Confidence 3999999999964 359999999999999999999999999999999999985 46899999999987
Q ss_pred Cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 003437 127 TS-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERR 205 (820)
Q Consensus 127 ~~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerq 205 (820)
.. ..++.+|||||++.+||++||+||+.|++..+ +.++++.+++++++++.+||++.+|+++. +|||||||
T Consensus 72 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~Q 143 (239)
T d1v43a3 72 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPA-----QLSGGQRQ 143 (239)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTT-----TCCSSCHH
T ss_pred cCCcccceEEEEeechhhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHH
Confidence 52 34567999999999999999999999987654 46888999999999999999988887764 79999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 206 RVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 206 Rv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||+.. +.++||||++|++|+|++.|+++
T Consensus 144 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~-a~~~~dri~vm~~G~iv~~G~~~ 222 (239)
T d1v43a3 144 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE-AMTMGDRIAVMNRGQLLQIGSPT 222 (239)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH-HHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHH-HHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999765 9999999999984 88999999999999999999999
Q ss_pred chhh
Q 003437 285 ALPA 288 (820)
Q Consensus 285 ~~~~ 288 (820)
++..
T Consensus 223 el~~ 226 (239)
T d1v43a3 223 EVYL 226 (239)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9853
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=4.1e-54 Score=444.93 Aligned_cols=221 Identities=32% Similarity=0.484 Sum_probs=200.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+|+|+++ ...+|+||||+|++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++.
T Consensus 3 ~i~v~nlsk~y~~g----------~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i~ 70 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG----------KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVA 70 (242)
T ss_dssp CEEEEEEEEEEGGG----------TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEEeEEEEECCC----------CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC--CCCceEEECCEEee
Confidence 38999999999642 2469999999999999999999999999999999999985 46899999999975
Q ss_pred C------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 127 T------SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 127 ~------~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
. ...++.+|||||++.+||.+||+||+.|++..+ +.++++.+++++++++.+||++..|++++ +||
T Consensus 71 ~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----~LS 142 (242)
T d1oxxk2 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----ELS 142 (242)
T ss_dssp ETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSC
T ss_pred cCchhhcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhCChh-----hCC
Confidence 3 123567999999999999999999999987654 46788899999999999999988888775 699
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
|||||||+|||||+++|++|||||||+|||+.++.++++.|+++.++ |.|||++|||++. +.++||||++|++|+|++
T Consensus 143 GGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~-~~~~~dri~vm~~G~iv~ 221 (242)
T d1oxxk2 143 GAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQ 221 (242)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHH-HHHHCSEEEEEETTEEEE
T ss_pred HHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHH-HHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999764 9999999999984 889999999999999999
Q ss_pred EcCccchhh
Q 003437 280 MGSPVALPA 288 (820)
Q Consensus 280 ~G~~~~~~~ 288 (820)
.|+++++.+
T Consensus 222 ~g~~~el~~ 230 (242)
T d1oxxk2 222 VGKPEDLYD 230 (242)
T ss_dssp EECHHHHHH
T ss_pred EcCHHHHHh
Confidence 999999864
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.7e-53 Score=440.71 Aligned_cols=219 Identities=30% Similarity=0.480 Sum_probs=200.4
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +.+|+||||+|++||+++|+||||||||||+|+|+|++. +++|+|.++|+++.
T Consensus 3 ~i~v~nl~k~yg~------------~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i~ 68 (240)
T d1g2912 3 GVRLVDVWKVFGE------------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVA 68 (240)
T ss_dssp EEEEEEEEEEETT------------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred cEEEEeEEEEECC------------EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEEec
Confidence 4899999999964 359999999999999999999999999999999999985 57899999999875
Q ss_pred Cc-------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 003437 127 TS-------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGV 199 (820)
Q Consensus 127 ~~-------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~L 199 (820)
.. ..++.+|||||++.++|.+||+||+.++..++ +.++++.+++++++++.+||++..|+++. +|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p~-----~L 140 (240)
T d1g2912 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPR-----EL 140 (240)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGG-----GS
T ss_pred ccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hC
Confidence 31 12567999999999999999999999998876 46788899999999999999998887765 69
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 200 SGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 200 SGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
||||||||+|||||+++|++|||||||+|||+.++.+++++|+++.++ |.|||++|||++. +..+||||++|++|+|+
T Consensus 141 SGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~-~~~~~drv~vm~~G~iv 219 (240)
T d1g2912 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE-AMTMGDRIAVMNRGVLQ 219 (240)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH-HHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHH-HHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999865 9999999999984 88999999999999999
Q ss_pred EEcCccchhh
Q 003437 279 YMGSPVALPA 288 (820)
Q Consensus 279 ~~G~~~~~~~ 288 (820)
+.|+++++..
T Consensus 220 ~~G~~~el~~ 229 (240)
T d1g2912 220 QVGSPDEVYD 229 (240)
T ss_dssp EEECHHHHHH
T ss_pred EEcCHHHHHh
Confidence 9999998864
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-54 Score=444.69 Aligned_cols=218 Identities=28% Similarity=0.455 Sum_probs=162.6
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+++|++ +.+|+||||+|++||+++|+||||||||||||+|+|+++ +++|+|+++|+++..
T Consensus 1 Iev~nv~k~yg~------------~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~ 66 (232)
T d2awna2 1 VQLQNVTKAWGE------------VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMND 66 (232)
T ss_dssp EEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCTT
T ss_pred CEEEEEEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEECCC
Confidence 689999999964 359999999999999999999999999999999999985 468999999999865
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ..++.+|||||++.+++.+||+||+.|+..++ +.++++.+++++++++.++|++..|+++. +||||||||
T Consensus 67 ~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQR 138 (232)
T d2awna2 67 TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQR 138 (232)
T ss_dssp SCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC-------------------------
T ss_pred CchhhceeeeeccccccccchhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCChhhhhCChh-----hCCHHHHHH
Confidence 3 34567999999999999999999999997765 35667788899999999999998888765 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
|+|||||+++|++|||||||+|||+.++.++++.|+++.+ .|+|||++|||+. ++..+|||+++|++|++++.|++++
T Consensus 139 vaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~G~iv~~G~~~e 217 (232)
T d2awna2 139 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLE 217 (232)
T ss_dssp -CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999999999999999975 5999999999997 4889999999999999999999999
Q ss_pred hhh
Q 003437 286 LPA 288 (820)
Q Consensus 286 ~~~ 288 (820)
+..
T Consensus 218 l~~ 220 (232)
T d2awna2 218 LYH 220 (232)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8e-54 Score=443.10 Aligned_cols=223 Identities=29% Similarity=0.462 Sum_probs=200.3
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|..+. ....+|+||||+|++||+++|+||||||||||+|+|+|+.+ +++|+|.++|+++.
T Consensus 1 mi~v~nlsk~y~~~~--------~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 1 MIKLSNITKVFHQGT--------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELT 70 (240)
T ss_dssp CEEEEEEEEEEECSS--------CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEEC
T ss_pred CEEEEeEEEEeCCCC--------eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc--ccCCceEEcCeEee
Confidence 389999999996532 12358999999999999999999999999999999999985 57899999999986
Q ss_pred Cc------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 003437 127 TS------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 127 ~~------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS 200 (820)
.. ..|+.+|||||++.++|.+||+||+.+++.++ +.++++.++++.++|+.+||++.+|+++. +||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~~~~-----~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPS-----NLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSSCBS-----CCC
T ss_pred eCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCC
Confidence 42 23456999999999999999999999998765 35677888999999999999998877765 699
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVY 279 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~ 279 (820)
|||||||+|||||+.+|++|||||||+|||+.++.+++++|+++.++ |.|||++|||+.. +..+||||++|++|+|++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~-~~~~~dri~vl~~G~iv~ 221 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDV-VKRICDCVAVISNGELIE 221 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHH-HHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHH-HHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999875 9999999999984 888999999999999999
Q ss_pred EcCccchhh
Q 003437 280 MGSPVALPA 288 (820)
Q Consensus 280 ~G~~~~~~~ 288 (820)
.|+++++.+
T Consensus 222 ~G~~~ei~~ 230 (240)
T d3dhwc1 222 QDTVSEVFS 230 (240)
T ss_dssp EEETTTTTC
T ss_pred ECCHHHHHh
Confidence 999999853
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.8e-53 Score=437.05 Aligned_cols=214 Identities=30% Similarity=0.486 Sum_probs=194.0
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|+++||+|+|++ .+|+||||+|++||+++|+||||||||||+|+|+|++. +++|+|+++|+++..
T Consensus 2 i~v~nlsk~y~~-------------~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~~ 66 (229)
T d3d31a2 2 IEIESLSRKWKN-------------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTD 66 (229)
T ss_dssp EEEEEEEEECSS-------------CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTT
T ss_pred EEEEEEEEEeCC-------------EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCCEEEEccEeccc
Confidence 899999999953 28999999999999999999999999999999999985 468999999999975
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ..++.+|||||++.+||.+||+||+.|+..++. ... .+++.++++.++|.+..|+++. +||||||||
T Consensus 67 ~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~---~~~---~~~~~~~l~~~~l~~~~~~~~~-----~LSGG~~QR 135 (229)
T d3d31a2 67 LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKD---PKRVLDTARDLKIEHLLDRNPL-----TLSGGEQQR 135 (229)
T ss_dssp SCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCC---HHHHHHHHHHTTCTTTTTSCGG-----GSCHHHHHH
T ss_pred cchhHhcceeeccccccCccccHHHHHHHHHhhcc---ccH---HHHHHHHHHHhcchhhHhCChh-----hCCHHHhcc
Confidence 3 245679999999999999999999999988763 222 3579999999999998888875 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
|+|||||+++|++|||||||+|||+.++.++.++|+++.+ .|.|||++|||+. ++.++||||++|++|++++.|++++
T Consensus 136 vaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~G~iv~~g~~~e 214 (229)
T d3d31a2 136 VALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEE 214 (229)
T ss_dssp HHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHH
T ss_pred hhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999976 5999999999998 4888999999999999999999999
Q ss_pred hhh
Q 003437 286 LPA 288 (820)
Q Consensus 286 ~~~ 288 (820)
+.+
T Consensus 215 l~~ 217 (229)
T d3d31a2 215 IFE 217 (229)
T ss_dssp HHS
T ss_pred HHh
Confidence 864
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.1e-52 Score=430.15 Aligned_cols=220 Identities=26% Similarity=0.411 Sum_probs=194.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|+.+. ....+|+||||+|++||+++|+|||||||||||++|+|+.+ +++|+|+++|+++.
T Consensus 1 mI~i~nlsk~y~~~~--------~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGE--------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp CEEEEEEEEEEEETT--------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred CEEEEeEEEEeCCCC--------eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC--CCcceeEECCEEcC
Confidence 389999999996532 22458999999999999999999999999999999999985 57899999999986
Q ss_pred Ccc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCC
Q 003437 127 TSY-------MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRS-ATHTYIGNEGRRG 198 (820)
Q Consensus 127 ~~~-------~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~ 198 (820)
... .++.+|||||++.++|.+||+||+.++...+.....+.++..+++.++|+.+||.+ .+++++. +
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~-----~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN-----Q 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGG-----G
T ss_pred cCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChh-----h
Confidence 421 23469999999999999999999999988765445678888899999999999976 4566654 7
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||||||||+|||||+++|++|||||||+|||+.++.+|+++|+++.++ |+|||++|||++ .+ ++||||++|++|+|
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a-~~~drv~~m~~G~I 223 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-VA-RFGERIIYLKDGEV 223 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH-HH-TTSSEEEEEETTEE
T ss_pred CCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH-HH-HhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999865 999999999986 34 79999999999999
Q ss_pred EEEcCc
Q 003437 278 VYMGSP 283 (820)
Q Consensus 278 v~~G~~ 283 (820)
++.|++
T Consensus 224 v~~g~~ 229 (230)
T d1l2ta_ 224 EREEKL 229 (230)
T ss_dssp EEEEEC
T ss_pred EEeccC
Confidence 999875
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.1e-50 Score=421.09 Aligned_cols=233 Identities=28% Similarity=0.392 Sum_probs=208.9
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ +++|+||||++++||++||+||||||||||+|+|+|++. |++|+|.++|+++.
T Consensus 2 aI~v~nl~k~yg~------------~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i~ 67 (238)
T d1vpla_ 2 AVVVKDLRKRIGK------------KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVV 67 (238)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred CEEEEeEEEEECC------------EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECcEecc
Confidence 3899999999964 359999999999999999999999999999999999985 46899999999986
Q ss_pred Cc--cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 003437 127 TS--YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGER 204 (820)
Q Consensus 127 ~~--~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGer 204 (820)
.. ..++.+|||||++.+++.+||.||+.|...++ ..+..+..+.++++++.++|.+..+++++ +||||||
T Consensus 68 ~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~ 139 (238)
T d1vpla_ 68 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMV 139 (238)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHH
T ss_pred cChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCCHHHHhhhhh-----hCCHHHH
Confidence 42 34677999999999999999999999998876 34677788899999999999999988886 5999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCcc
Q 003437 205 RRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPV 284 (820)
Q Consensus 205 qRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 284 (820)
|||+|||||+++|++|||||||+|||+.++.++.++|++++++|+|||++||+++ ++..+||||++|++|++++.|+++
T Consensus 140 qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~G~iv~~g~~~ 218 (238)
T d1vpla_ 140 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVE 218 (238)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999999999999999999999999998 488999999999999999999999
Q ss_pred chhhhhhccCCCCCCCCChHHHHHHH
Q 003437 285 ALPAHLAGFGRTVPDGENSLEYLLDV 310 (820)
Q Consensus 285 ~~~~~f~~~g~~~~~~~~~ad~~~~~ 310 (820)
++.+.+. ..+..+.+.++
T Consensus 219 el~~~~~--------~~~~~~~f~~~ 236 (238)
T d1vpla_ 219 ELKERYK--------AQNIEEVFEEV 236 (238)
T ss_dssp HHHHHTT--------CSSHHHHHHHH
T ss_pred HHHhccC--------CchHHHHHHHh
Confidence 9987543 23445555554
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=8.4e-51 Score=426.53 Aligned_cols=220 Identities=26% Similarity=0.437 Sum_probs=196.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ ..+|+||||+|++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++.
T Consensus 2 ~Lev~nl~k~yg~------------~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~ 67 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG------------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNIN 67 (258)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred eEEEEEEEEEECC------------EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc--CCCCCEEECCEEec
Confidence 3999999999954 359999999999999999999999999999999999985 47899999999985
Q ss_pred Cc----------------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccc
Q 003437 127 TS----------------YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSA-THT 189 (820)
Q Consensus 127 ~~----------------~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~ 189 (820)
.. ..++.+|||||++.++|.+||.||+.++.... ...++++.++++.++++.+||.+. .++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 145 (258)
T d1b0ua_ 68 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQGK 145 (258)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred cCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHh--cCCCHHHHHHHHHHHHHHcCCchhhhcc
Confidence 31 13456899999999999999999999875332 235788888999999999999764 455
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEE
Q 003437 190 YIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRI 269 (820)
Q Consensus 190 ~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v 269 (820)
++ .+|||||||||+|||+|+.+|++|||||||+|||+.++.+|+++|++++++|+|||++|||+.. +..+||||
T Consensus 146 ~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~-~~~~adri 219 (258)
T d1b0ua_ 146 YP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF-ARHVSSHV 219 (258)
T ss_dssp CG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHH-HHHHCSEE
T ss_pred Cc-----ccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHH-HHHhCCEE
Confidence 54 4799999999999999999999999999999999999999999999999999999999999984 88899999
Q ss_pred EEEeCCeEEEEcCccchhh
Q 003437 270 IVLARGRLVYMGSPVALPA 288 (820)
Q Consensus 270 ~lL~~G~iv~~G~~~~~~~ 288 (820)
++|++|+|++.|+++++..
T Consensus 220 ~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 220 IFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEECCEEEEEcCHHHHHh
Confidence 9999999999999999864
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=7.9e-51 Score=422.99 Aligned_cols=221 Identities=27% Similarity=0.431 Sum_probs=194.1
Q ss_pred CCceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE
Q 003437 44 PGHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK 123 (820)
Q Consensus 44 ~~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~ 123 (820)
....|+++||+++|++ +.+|+||||+|++||+++|+||||||||||+|+|+|+++ +++|+|.++|+
T Consensus 3 sd~~Lev~~l~k~yg~------------~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~ 68 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYGA------------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQ 68 (240)
T ss_dssp CSEEEEEEEEEEEETT------------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTE
T ss_pred cceEEEEeeEEEEECC------------EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEeccc
Confidence 4567999999999964 359999999999999999999999999999999999985 46899999999
Q ss_pred eCCCcc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCC
Q 003437 124 PVTTSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQL-GLRSATHTYIGNEGRRG 198 (820)
Q Consensus 124 ~~~~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~ 198 (820)
++.... .+..++|+||+..+|+.+||+||+.+.+..+. .++..++.++++++.+ +|.+..+++++ +
T Consensus 69 ~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~ 139 (240)
T d1ji0a_ 69 DITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLGG-----T 139 (240)
T ss_dssp ECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBSS-----S
T ss_pred ccccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcC----CHHHHHHHHHHHHHHhhChHHHHhCchh-----h
Confidence 986532 23348999999999999999999988765432 2334456677777776 68888887776 6
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLV 278 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv 278 (820)
|||||||||+|||||+++|++|||||||+|||+.++.+++++|++++++|+|||++||+++ ++.++||||++|++|+++
T Consensus 140 LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~G~iv 218 (240)
T d1ji0a_ 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIV 218 (240)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999989999999999997 488999999999999999
Q ss_pred EEcCccchhh
Q 003437 279 YMGSPVALPA 288 (820)
Q Consensus 279 ~~G~~~~~~~ 288 (820)
+.|+++++.+
T Consensus 219 ~~g~~~el~~ 228 (240)
T d1ji0a_ 219 LEGKASELLD 228 (240)
T ss_dssp EEEEHHHHHT
T ss_pred EEcCHHHHhc
Confidence 9999998853
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.7e-50 Score=420.37 Aligned_cols=222 Identities=22% Similarity=0.350 Sum_probs=196.2
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ .++|+||||++++||+++|+||||||||||+|+|+|+++ +++|+|.++|+++.
T Consensus 4 iL~v~nlsk~yg~------------~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i~ 69 (254)
T d1g6ha_ 4 ILRTENIVKYFGE------------FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDIT 69 (254)
T ss_dssp EEEEEEEEEEETT------------EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred eEEEEEEEEEECC------------eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc--CCCcEEEECCEecc
Confidence 5999999999964 349999999999999999999999999999999999985 46899999999986
Q ss_pred Ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcC----------CCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 003437 127 TSY----MKMVSSYVMQDDQLFPMLTVFETFMFAAEVRL----------PPSISRDEKKKRVYELLDQLGLRSATHTYIG 192 (820)
Q Consensus 127 ~~~----~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~----------~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig 192 (820)
... .+..++|+||++.+++.+||.||+.++...+. .....+++..+++.++++.+++.+..|++++
T Consensus 70 ~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 149 (254)
T d1g6ha_ 70 NKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 149 (254)
T ss_dssp TCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred chhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchh
Confidence 432 23458999999999999999999988643221 1112345566789999999999998888876
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 193 NEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 193 ~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
.|||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++|+|||+++||++. +.++||||++|
T Consensus 150 -----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~-~~~~~Drv~vm 223 (254)
T d1g6ha_ 150 -----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVM 223 (254)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST-TGGGCSEEEEE
T ss_pred -----hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHH-HHHhCCEEEEE
Confidence 599999999999999999999999999999999999999999999999899999999999985 88999999999
Q ss_pred eCCeEEEEcCccchhh
Q 003437 273 ARGRLVYMGSPVALPA 288 (820)
Q Consensus 273 ~~G~iv~~G~~~~~~~ 288 (820)
++|++++.|+++++..
T Consensus 224 ~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 224 FNGQIIAEGRGEEEIK 239 (254)
T ss_dssp ETTEEEEEEESHHHHH
T ss_pred eCCEEEEEecHHHHhh
Confidence 9999999999988654
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.4e-49 Score=409.95 Aligned_cols=212 Identities=29% Similarity=0.479 Sum_probs=188.6
Q ss_pred EEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCC
Q 003437 48 LEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTT 127 (820)
Q Consensus 48 L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~ 127 (820)
|++ ++.++|+.. -+ ||||++. +|+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 3 l~v-~~~k~~g~~-------------~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~ 64 (240)
T d2onka1 3 LKV-RAEKRLGNF-------------RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITP 64 (240)
T ss_dssp EEE-EEEEEETTE-------------EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTT
T ss_pred EEE-EEEEEECCE-------------EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCc
Confidence 666 567776431 23 7999995 68999999999999999999999985 468999999999975
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 128 S-YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 128 ~-~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. ..++.+|||||++.++|++||+||+.|+++ ..++.+.+++++++++.+||++.+++++. +||||||||
T Consensus 65 ~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~-----~~~~~~~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~kQR 134 (240)
T d2onka1 65 LPPERRGIGFVPQDYALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQR 134 (240)
T ss_dssp SCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCT-----TSCHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHH
T ss_pred CCHHHcCceeeccchhhcccchhhHhhhhhhc-----ccCHHHHHHHHHHHHHhcCcHhhhhCChh-----hCCHHHHHH
Confidence 3 345679999999999999999999998753 35677888999999999999998888775 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccc
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVA 285 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 285 (820)
|+|||||+++|++|||||||+|||+.++..+++.|++++++ |.|||++|||++ ++.++||||++|++|++++.|++++
T Consensus 135 vaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~G~ii~~G~~~e 213 (240)
T d2onka1 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKE 213 (240)
T ss_dssp HHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEEecHHH
Confidence 99999999999999999999999999999999999999765 999999999998 4889999999999999999999999
Q ss_pred hhh
Q 003437 286 LPA 288 (820)
Q Consensus 286 ~~~ 288 (820)
+.+
T Consensus 214 l~~ 216 (240)
T d2onka1 214 LFS 216 (240)
T ss_dssp HHH
T ss_pred Hhc
Confidence 863
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.3e-48 Score=399.79 Aligned_cols=220 Identities=27% Similarity=0.483 Sum_probs=182.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
+|+++||+|+|+.. .+.+|+||||+|++||.+||+||||||||||+++|+|++. +.+|+|.+||+++.
T Consensus 1 eI~~~nvsf~Y~~~----------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 68 (241)
T d2pmka1 1 DITFRNIRFRYKPD----------SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLA 68 (241)
T ss_dssp EEEEEEEEEESSTT----------SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred CeEEEEEEEEeCCC----------CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC--CCCCEEEECCEEec
Confidence 38999999999642 2459999999999999999999999999999999999985 46899999999986
Q ss_pred Cc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHH--HHHHHc-CCCccccccccCCCCCCCC
Q 003437 127 TS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVY--ELLDQL-GLRSATHTYIGNEGRRGVS 200 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~--~~l~~l-gL~~~~~~~ig~~~~~~LS 200 (820)
.. .+++.++||+|++.+|+. ||+|||.++.. ..+.++..+..+ .+.+.+ .+....++.++. .+..||
T Consensus 69 ~~~~~~lr~~i~~v~Q~~~lf~~-Ti~eNi~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~-~g~~LS 141 (241)
T d2pmka1 69 LADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANP-----GMSVEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLS 141 (241)
T ss_dssp TSCHHHHHHHEEEECSSCCCTTS-BHHHHHCTTST-----TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCST-TTTCCC
T ss_pred ccchhhhhceEEEEecccccCCc-cccccccccCc-----cccHHHHHHHHHHHhhHHHHHhhhcchhhhcCC-CCCccC
Confidence 52 356789999999998875 99999987532 233333222211 112222 334566777764 457899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEE
Q 003437 201 GGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYM 280 (820)
Q Consensus 201 GGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~ 280 (820)
|||||||+|||||+.+|+|||||||||+||+.++..|++.|+++.+ |+|+|++||+++. + +.||||++|++|+|++.
T Consensus 142 GGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~-~~~D~i~vl~~G~Iv~~ 218 (241)
T d2pmka1 142 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLST-V-KNADRIIVMEKGKIVEQ 218 (241)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGGG-G-TTSSEEEEEETTEEEEE
T ss_pred HHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHHH-H-HhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999865 8999999999974 4 67999999999999999
Q ss_pred cCccchhh
Q 003437 281 GSPVALPA 288 (820)
Q Consensus 281 G~~~~~~~ 288 (820)
|++++++.
T Consensus 219 G~~~ell~ 226 (241)
T d2pmka1 219 GKHKELLS 226 (241)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHh
Confidence 99999864
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-48 Score=406.60 Aligned_cols=221 Identities=25% Similarity=0.414 Sum_probs=184.6
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+|+|+++. ++.+|+||||+|++||++||+||||||||||+++|+|++. |.+|+|++||+++.
T Consensus 11 ~I~~~nvsf~Y~~~~---------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i~ 79 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRP---------DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLP 79 (251)
T ss_dssp CEEEEEEEECCTTST---------TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG
T ss_pred eEEEEEEEEECCCCC---------CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC--CCcCEEEECCEecc
Confidence 599999999997532 3469999999999999999999999999999999999985 46899999999986
Q ss_pred Cc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCCCCCC
Q 003437 127 TS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKR-----VYELLDQLGLRSATHTYIGNEGRRG 198 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~ig~~~~~~ 198 (820)
.. ..++.++||+|++.+|+. ||+||+.++.... ....+..+. ..+.++ +|.+..++.++ +.+..
T Consensus 80 ~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~g~~~~----~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~-~~~~~ 151 (251)
T d1jj7a_ 80 QYEHRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQK----PTMEEITAAAVKSGAHSFIS--GLPQGYDTEVD-EAGSQ 151 (251)
T ss_dssp GBCHHHHHHHEEEECSSCCCCSS-BHHHHHHCSCSSC----CCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCC-SSCSS
T ss_pred hhhhHHHHHHhhhccccccccCc-chhhhhhhhhccc----chHHHHHHHHHHHHHHHHHH--hccccchhhHh-ccCcc
Confidence 42 356789999999999975 9999999864321 222222111 122233 45566777776 35568
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCccHHHHhhcCEEEEEeCCeE
Q 003437 199 VSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIART-GSIVLMTIHQPSYRIQMLLDRIIVLARGRL 277 (820)
Q Consensus 199 LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~lL~~G~i 277 (820)
|||||||||+|||||+++|+|||||||||+||+.+..++++.|+++.++ |+|||++||+++. + +.||||++|++|+|
T Consensus 152 LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~-~-~~aDrI~vl~~G~i 229 (251)
T d1jj7a_ 152 LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSL-V-EQADHILFLEGGAI 229 (251)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHH-H-HTCSEEEEEETTEE
T ss_pred CChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHH-H-HhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999764 8999999999863 4 56999999999999
Q ss_pred EEEcCccchhh
Q 003437 278 VYMGSPVALPA 288 (820)
Q Consensus 278 v~~G~~~~~~~ 288 (820)
++.|+++++++
T Consensus 230 v~~Gt~~eLl~ 240 (251)
T d1jj7a_ 230 REGGTHQQLME 240 (251)
T ss_dssp EEEECHHHHHH
T ss_pred EEECCHHHHHh
Confidence 99999999875
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.3e-48 Score=406.73 Aligned_cols=216 Identities=28% Similarity=0.456 Sum_probs=182.1
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|++|||+|+|++. +.+|+||||+|++||++||+||||||||||+++|+|++. |.+|+|.+||+++.
T Consensus 1 mle~knvsf~Y~~~-----------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 1 MLSARHVDFAYDDS-----------EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (242)
T ss_dssp CEEEEEEEECSSSS-----------SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred CEEEEEEEEECCCC-----------CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC--CCCCEEEECCEEec
Confidence 38999999999642 359999999999999999999999999999999999985 46899999999986
Q ss_pred C---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCCCC
Q 003437 127 T---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQL-------GLRSATHTYIGNEGR 196 (820)
Q Consensus 127 ~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~ig~~~~ 196 (820)
. ..+++.++||+|++.+|+. ||+||+.++... ..+.++. .+.++.. .+.+..++.+++. +
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~-g 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEG----DYTDEDL----WQVLDLAFARSFVENMPDQLNTEVGER-G 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTS----CSCHHHH----HHHHHHHTCTTTTTSSTTGGGCEESTT-S
T ss_pred cccHHHHHhheEEEccccccCCc-chhhheeccccc----ccchhhH----HHHHHHHHhhhhhccCcccccccccCC-C
Confidence 4 3457789999999999987 999999775321 1233332 2233322 3345667777753 4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..|||||||||+|||||+.+|+|||||||||+||+.++..+++.|++++ +|+|||++||+++. + ..||||++|++|+
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~-~-~~~D~i~vl~~G~ 214 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLST-I-VDADKIYFIEKGQ 214 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHH-H-HHCSEEEEEETTE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHHH-H-HhCCEEEEEECCE
Confidence 5799999999999999999999999999999999999999999999997 48999999999974 5 4699999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
|++.|+++++++
T Consensus 215 iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 215 ITGSGKHNELVA 226 (242)
T ss_dssp ECCCSCHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999999875
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.7e-47 Score=400.84 Aligned_cols=217 Identities=28% Similarity=0.405 Sum_probs=183.7
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+|+|+.+ +.++|+||||+|++||++||+||||||||||+++|+|++. +.+|+|++||+++.
T Consensus 13 ~I~~~nvsf~Y~~~----------~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 80 (253)
T d3b60a1 13 DLEFRNVTFTYPGR----------EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLR 80 (253)
T ss_dssp CEEEEEEEECSSSS----------SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEETT
T ss_pred EEEEEEEEEEeCCC----------CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC--CCccEEEECCcccc
Confidence 59999999999653 2469999999999999999999999999999999999985 46899999999987
Q ss_pred Cc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCC
Q 003437 127 TS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNEGR 196 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~ 196 (820)
.. .+++.++||+|++.+|+. |+++|+.++.. ...+.++ +.++++..++ ++..++.+++ .+
T Consensus 81 ~~~~~~~r~~i~~v~Q~~~l~~~-ti~~n~~~~~~----~~~~~~~----i~~a~~~~~l~~~i~~l~~gl~t~~~~-~~ 150 (253)
T d3b60a1 81 EYTLASLRNQVALVSQNVHLFND-TVANNIAYART----EEYSREQ----IEEAARMAYAMDFINKMDNGLDTIIGE-NG 150 (253)
T ss_dssp TBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT----SCCCHHH----HHHHHHTTTCHHHHHHSTTGGGSBCCT-TS
T ss_pred hhhhhhhhheEEEEeeccccCCc-chhhhhhhcCc----ccCCHHH----HHHHHHHHhHHHHHHhccccchhhhcC-CC
Confidence 53 356779999999999876 99999987631 1233332 3334443333 3346777764 46
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 197 RGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
..|||||||||+|||||+.+|+|||||||||+||+.++..|++.|+++.+ ++|||++||+++. + ..||+|++|++|+
T Consensus 151 ~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~-~~~D~v~vl~~G~ 227 (253)
T d3b60a1 151 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADEIVVVEDGI 227 (253)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSEEEEEETTE
T ss_pred CCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHH-H-HhCCEEEEEECCE
Confidence 78999999999999999999999999999999999999999999999975 8999999999974 4 6799999999999
Q ss_pred EEEEcCccchhh
Q 003437 277 LVYMGSPVALPA 288 (820)
Q Consensus 277 iv~~G~~~~~~~ 288 (820)
|++.|+++++++
T Consensus 228 Iv~~G~~~eLl~ 239 (253)
T d3b60a1 228 IVERGTHSELLA 239 (253)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999999875
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.9e-47 Score=399.92 Aligned_cols=218 Identities=28% Similarity=0.420 Sum_probs=185.6
Q ss_pred CceEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEe
Q 003437 45 GHGLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKP 124 (820)
Q Consensus 45 ~~~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~ 124 (820)
...|+++||+|+|+.+ .+.+|+||||+|++||++||+||||||||||+|+|+|++. +.+|+|.++|++
T Consensus 14 ~g~I~~~nvsf~Y~~~----------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 81 (255)
T d2hyda1 14 QGRIDIDHVSFQYNDN----------EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHN 81 (255)
T ss_dssp SCCEEEEEEEECSCSS----------SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEE
T ss_pred CCEEEEEEEEEEeCCC----------CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC--ccccccccCCEE
Confidence 3469999999999653 2469999999999999999999999999999999999985 468999999999
Q ss_pred CCC---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCC
Q 003437 125 VTT---SYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGL-------RSATHTYIGNE 194 (820)
Q Consensus 125 ~~~---~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~ 194 (820)
+.. ..+++.++||+|++.+|+. ||+|||.|+.. ..+.+ ++.++++..++ .+..++.+++
T Consensus 82 i~~~~~~~lr~~i~~v~Q~~~lf~~-Ti~eNi~~g~~-----~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~- 150 (255)
T d2hyda1 82 IKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-----TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGE- 150 (255)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCG-
T ss_pred cccCCHHHhhheeeeeeccccCCCC-CHHHHHhccCc-----CCCHH----HHHHHHHHhCCHHHHHhccccccchhcC-
Confidence 864 2467789999999999875 99999987631 22333 34445555444 4556788875
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 195 GRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 195 ~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
.+..|||||||||+|||||+++|+|||||||||+||+.+...|++.|+++.+ ++|+|++||+++. + ..||||++|++
T Consensus 151 ~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~~-~-~~~D~ii~l~~ 227 (255)
T d2hyda1 151 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLST-I-THADKIVVIEN 227 (255)
T ss_dssp GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-T-TTCSEEEEEET
T ss_pred CCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-H-HhCCEEEEEEC
Confidence 4467999999999999999999999999999999999999999999999875 7899999999974 4 67999999999
Q ss_pred CeEEEEcCccchhh
Q 003437 275 GRLVYMGSPVALPA 288 (820)
Q Consensus 275 G~iv~~G~~~~~~~ 288 (820)
|+|++.|+++++++
T Consensus 228 G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 228 GHIVETGTHRELIA 241 (255)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999875
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-44 Score=373.43 Aligned_cols=208 Identities=24% Similarity=0.391 Sum_probs=181.0
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++ .+|+||||+|++||++||+||||||||||+|+|+|+. +.+|+|.++|+++.
T Consensus 3 il~~~dv~~~----------------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~---~~~G~I~~~g~~i~ 63 (231)
T d1l7vc_ 3 VMQLQDVAES----------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGKGSIQFAGQPLE 63 (231)
T ss_dssp EEEEEEECCT----------------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC---CCSSEEEESSSBGG
T ss_pred EEEEECcccC----------------ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---CCceEEEECCEECC
Confidence 5899998643 2799999999999999999999999999999999975 25799999999875
Q ss_pred Cc---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 003437 127 TS---YMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGE 203 (820)
Q Consensus 127 ~~---~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGe 203 (820)
.. ..+...+|++|+.......++.+++.+... .+...++++++++.++|.+..++.+. .|||||
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~ 130 (231)
T d1l7vc_ 64 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGALALDDKLGRSTN-----QLSGGE 130 (231)
T ss_dssp GSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCS--------CTTCHHHHHHHHHHTTCTTTTTSBGG-----GCCHHH
T ss_pred cCCHHHHHhhceeeeccccCCccccHHHHhhhccc--------hhhHHHHHHHHHHhcCCHhHhCcChh-----hcCHHH
Confidence 42 233457899998876666799999886532 11234678899999999998888775 699999
Q ss_pred HHHHHHHHHHhc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCe
Q 003437 204 RRRVSIGIDIIH-------KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGR 276 (820)
Q Consensus 204 rqRv~ia~aL~~-------~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~ 276 (820)
||||+||++|++ +|+||||||||+|||+.++..+.++|++++++|.|||+++||++. +.++|||+++|++|+
T Consensus 131 ~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~-~~~~~dri~vl~~G~ 209 (231)
T d1l7vc_ 131 WQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKGGK 209 (231)
T ss_dssp HHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHH-HHHHCSBCCBEETTE
T ss_pred HHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHHCCEEEEEECCE
Confidence 999999999997 779999999999999999999999999999999999999999985 889999999999999
Q ss_pred EEEEcCccchh
Q 003437 277 LVYMGSPVALP 287 (820)
Q Consensus 277 iv~~G~~~~~~ 287 (820)
+++.|+++++.
T Consensus 210 iv~~G~~~ev~ 220 (231)
T d1l7vc_ 210 MLASGRREEVL 220 (231)
T ss_dssp ECCCSBHHHHS
T ss_pred EEEECCHHHHh
Confidence 99999999885
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.9e-42 Score=367.72 Aligned_cols=195 Identities=24% Similarity=0.366 Sum_probs=160.5
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCCCCCHHH
Q 003437 72 AYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFE 151 (820)
Q Consensus 72 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~~lTV~e 151 (820)
++||+||||+|++||++||+||||||||||+|+|+|++. +++|+|.++| +++||+|++.+++. ||+|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG----------RVSFCSQFSWIMPG-TIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCS----------CEEEECSSCCCCSE-EHHH
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc--CCCcEEEECC----------EEEEEeccccccCc-eeec
Confidence 469999999999999999999999999999999999985 4689999988 37999999999986 9999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHH---HHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 003437 152 TFMFAAEVRLPPSISRDEKKKRVYE---LLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSG 228 (820)
Q Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~v~~---~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsg 228 (820)
|+.|+.. .......+.++. ......+.+..++.++. ....|||||||||+|||||+++|+||||||||++
T Consensus 116 ni~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~ 188 (281)
T d1r0wa_ 116 NIIFGVS------YDEYRYKSVVKACQLQQDITKFAEQDNTVLGE-GGVTLSGGQRARISLARAVYKDADLYLLDSPFGY 188 (281)
T ss_dssp HHTTTSC------CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCS
T ss_pred ccccccc------ccchHHHHHHHHHHhHHHHHhchhhhhhhhhh-hccCCCHHHHHHHHHHHHHHhCccchhhcCcccc
Confidence 9987632 222222221111 12233555566777764 3457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEcCccchhh
Q 003437 229 LDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMGSPVALPA 288 (820)
Q Consensus 229 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 288 (820)
||+.+..++++.+......++|+|++||+++ ..+.||||++|++|+++++|+++++..
T Consensus 189 LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~--~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 189 LDVFTEEQVFESCVCKLMANKTRILVTSKME--HLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp SCHHHHHHHHHHCCCCCTTTSEEEEECSCHH--HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEechHH--HHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999865444456899999999985 346899999999999999999999864
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4.1e-41 Score=340.76 Aligned_cols=196 Identities=21% Similarity=0.361 Sum_probs=164.5
Q ss_pred eEEEEEEEEEECcccccccccccccccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCC
Q 003437 47 GLEFKNLSYSIMKKQKKDGVWITKEAYLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVT 126 (820)
Q Consensus 47 ~L~~~nls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~ 126 (820)
.|+++||+++|++ ++|+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+||+++.
T Consensus 2 ~lev~~ls~~y~~-------------~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i~ 66 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK-------------PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPIT 66 (200)
T ss_dssp EEEEEEEEEESSS-------------EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG
T ss_pred eEEEEEEEEEeCC-------------eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc--cCCCEEEECCEehh
Confidence 3899999999842 49999999999999999999999999999999999985 47899999999986
Q ss_pred CccccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 003437 127 TSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRR 206 (820)
Q Consensus 127 ~~~~~~~~gyv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqR 206 (820)
. .+..++|++|+..++..+|++|++.+...++.. ..++ +.+.+.++.+++.+. +..++ +||||||||
T Consensus 67 ~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~-~~~~~-----~LSgG~~qr 133 (200)
T d1sgwa_ 67 K--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVNK----NEIMDALESVEVLDL-KKKLG-----ELSQGTIRR 133 (200)
T ss_dssp G--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCCH----HHHHHHHHHTTCCCT-TSBGG-----GSCHHHHHH
T ss_pred H--hcCcEEEEeecccCCCCcCHHHHHHHHHHhcCC-ccCH----HHHHHHHHHcCCccc-ccccC-----cCCCcHHHH
Confidence 4 466789999999999999999999998877532 2232 346677888887653 33454 699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEEeC
Q 003437 207 VSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVLAR 274 (820)
Q Consensus 207 v~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL~~ 274 (820)
|+|||+|+.+|+++||||||+|||+.++..+++.|+++.+++.++|+++|+. ..+||.+.+|++
T Consensus 134 v~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 134 VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred HHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEech----hhhcchhhheee
Confidence 9999999999999999999999999999999999999987644555555542 146999988864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.53 E-value=4.9e-16 Score=151.13 Aligned_cols=154 Identities=13% Similarity=0.141 Sum_probs=99.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEc--cCCC--CCCCCCHHHHHHHHHHhcCCC
Q 003437 88 MAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVM--QDDQ--LFPMLTVFETFMFAAEVRLPP 163 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~--Q~~~--l~~~lTV~e~l~~~~~~~~~~ 163 (820)
++|+||||||||||+++|+|.+.+ ..|.+...+.+......+ .++.. .... .....+..+. .+
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~--~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~--- 69 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETKKR--TGFRIITTEGKKKIFSSKFFTSK------KL--- 69 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGG--GEEEEEEEEEC------C--CEEEEEETTCCEEEEEETTCCCS------SE---
T ss_pred EEEECCCCcHHHHHHHHHHhcCCC--CcceEEECCcchHHHHHh--hhhhhhhhhHHHHHHhhhhhhhh------hh---
Confidence 799999999999999999998853 579999887665432211 12111 1110 0000000000 00
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 003437 164 SISRDEKKKRVYELLDQLGLRSATHTYIGNEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKD 243 (820)
Q Consensus 164 ~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSGGerqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~ 243 (820)
. ...+. +.. ...+|+|+++|.++++++..+|++|++|||.... .....+.+.|.+
T Consensus 70 -~-------------~~~~~----~~~-----~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~ 124 (178)
T d1ye8a1 70 -V-------------GSYGV----NVQ-----YFEELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQ 124 (178)
T ss_dssp -E-------------TTEEE----CHH-----HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHH
T ss_pred -h-------------hhhhc----Ccc-----hhhhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHH
Confidence 0 00000 000 1148999999999999999999999999985443 344566677777
Q ss_pred HHh-CCcEEEEEEcCccHHHHhhcCEEEEEeCCeEEEEc
Q 003437 244 IAR-TGSIVLMTIHQPSYRIQMLLDRIIVLARGRLVYMG 281 (820)
Q Consensus 244 l~~-~g~tvi~~~H~~~~~i~~~~D~v~lL~~G~iv~~G 281 (820)
+.+ .+.++|+++|+.. ...++|++..+.+|+++.-+
T Consensus 125 ~l~~~~~~il~~~h~~~--~~~~~~~i~~~~~~~i~~v~ 161 (178)
T d1ye8a1 125 IMHDPNVNVVATIPIRD--VHPLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp HHTCTTSEEEEECCSSC--CSHHHHHHHTCTTCEEEECC
T ss_pred HhccCCCEEEEEEccHH--HHHhhceEEEEeCCEEEEEC
Confidence 655 5899999999975 45678999999999998643
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.01 E-value=7.1e-09 Score=108.54 Aligned_cols=76 Identities=22% Similarity=0.296 Sum_probs=63.8
Q ss_pred CCCChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEE-
Q 003437 197 RGVSGGERRRVSIGIDI----IHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIV- 271 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL----~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~l- 271 (820)
..+|+|||+...++..+ ..+|.++++|||-++|+|.....+.+.|+++++ +.=||++||.|. +.+.+|+++.
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~v 294 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHGV 294 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEEE
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhcccEEEE
Confidence 46899999998777654 346789999999999999999999999999875 577999999997 4578999866
Q ss_pred -EeCC
Q 003437 272 -LARG 275 (820)
Q Consensus 272 -L~~G 275 (820)
+.+|
T Consensus 295 ~~~~g 299 (308)
T d1e69a_ 295 TMVNG 299 (308)
T ss_dssp EESSS
T ss_pred EEeCC
Confidence 4456
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.64 E-value=2.3e-08 Score=108.78 Aligned_cols=74 Identities=15% Similarity=0.237 Sum_probs=63.2
Q ss_pred CCCChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCEEEEE
Q 003437 197 RGVSGGERRRVSIGIDI----IHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDRIIVL 272 (820)
Q Consensus 197 ~~LSGGerqRv~ia~aL----~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~v~lL 272 (820)
..||||||.++++|..+ ..++++++||||+++||+..+..+.+.|++++..+.-+|+|||+|. +...+|+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~--~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHH--HHHhcccEEEE
Confidence 46899999998877544 3567899999999999999999999999998766667999999985 67889998755
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.99 E-value=1.2e-06 Score=87.62 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEEcCcc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK-VKDIARTGSIVLMTIHQPS 259 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~-L~~l~~~g~tvi~~~H~~~ 259 (820)
|-+|+.-....+.+..++|+||+.+|=|+.....+... ++.|.+.+..++++||..+
T Consensus 101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~e 158 (224)
T d1ewqa2 101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFE 158 (224)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHH
T ss_pred hHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechh
Confidence 33444444444556679999999999999887776655 4556777889999999964
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.86 E-value=2.9e-06 Score=85.50 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhC-CcEEEEEEcCcc
Q 003437 203 ERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEK-VKDIART-GSIVLMTIHQPS 259 (820)
Q Consensus 203 erqRv~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~-L~~l~~~-g~tvi~~~H~~~ 259 (820)
|.+|+.-...-+.+..++|+||+.+|=|+.....+... |+.+..+ +..+|++||...
T Consensus 107 E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 107 EMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHH
Confidence 33344333334556679999999999999999888655 6667654 567888888764
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.37 E-value=0.0016 Score=65.67 Aligned_cols=35 Identities=34% Similarity=0.374 Sum_probs=28.6
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 73 YLLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 73 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
+-|+++.+=+.+|+++.|.|++|+|||||+.-|+-
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 34666555579999999999999999999877764
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=3.2e-05 Score=73.63 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=30.0
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-+++.++.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 467778888776 99999999999999999997544
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=0.0046 Score=61.98 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=34.3
Q ss_pred HHhcCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhC-CcEEEEEEcCc
Q 003437 212 DIIHKPSLLFLDEPTS-----GLDSTSAYSVVEKVKDIART-GSIVLMTIHQP 258 (820)
Q Consensus 212 aL~~~P~lLllDEPts-----gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~ 258 (820)
.-..+|+++++|--++ --|......++..|+.+++. |.+||++.|..
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhcc
Confidence 3457999999996543 23667777888888888764 88888887743
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.75 E-value=0.00033 Score=66.66 Aligned_cols=25 Identities=44% Similarity=0.775 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
|.++.|+||||||||||++.|....
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 8899999999999999999998765
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.75 E-value=0.00033 Score=65.25 Aligned_cols=26 Identities=42% Similarity=0.622 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.|++++|.||+||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999999865
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.74 E-value=0.022 Score=54.72 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=26.3
Q ss_pred ceeee-eEEEeCCcEEEEEcCCCCcHHHHHHHHH
Q 003437 74 LLHDI-SGQAIRGEIMAIMGPSGAGKSTFLDALA 106 (820)
Q Consensus 74 iL~~v-s~~i~~Ge~~allGpnGsGKSTLl~~L~ 106 (820)
-|+++ ++=+++|+++.|.|++|+|||||+--++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 45554 3469999999999999999999985433
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.00037 Score=64.53 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+++|+|++|||||||++.|+..+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l 26 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPAL 26 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.56 E-value=0.00059 Score=67.42 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEE
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVR 119 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~ 119 (820)
+|+.++++|+||+|||||+|.|.|... -..|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~--~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC--CC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhh--hhccCcc
Confidence 589999999999999999999998542 2246664
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.52 E-value=0.00054 Score=63.58 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+.+.++.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999999865
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.47 E-value=0.002 Score=64.53 Aligned_cols=23 Identities=35% Similarity=0.665 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-+.+.||+|+|||+|.++|+...
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEecCCCCChhHHHHHHHHHc
Confidence 37899999999999999999854
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.45 E-value=0.00066 Score=63.08 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+|-++.|+|++||||||+.+.|+-.+
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999765
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.37 E-value=0.017 Score=56.33 Aligned_cols=59 Identities=24% Similarity=0.303 Sum_probs=39.7
Q ss_pred cCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHh-CCcEEEEEEcCcc---------HHHHhhcCEEEEEe
Q 003437 215 HKPSLLFLDEPTS---GLDSTSAYSVVEKVKDIAR-TGSIVLMTIHQPS---------YRIQMLLDRIIVLA 273 (820)
Q Consensus 215 ~~P~lLllDEPts---gLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~---------~~i~~~~D~v~lL~ 273 (820)
.+|++++.|--+. +.+.......+..|.++++ .+.+++++.|-.. ..+..++|-++.|+
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 4789999887544 4466666666666666654 6889888887421 12345678887774
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.35 E-value=0.0045 Score=62.25 Aligned_cols=25 Identities=32% Similarity=0.620 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..-+.|.||+|+|||+|.+.|+..+
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHHc
Confidence 3457899999999999999999754
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.33 E-value=0.00076 Score=62.84 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..++|.||+|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999865
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.19 E-value=0.00081 Score=62.69 Aligned_cols=24 Identities=17% Similarity=0.421 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+++|+|++|||||||++-|...+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L 25 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAA 25 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 378999999999999999887765
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.18 E-value=0.0012 Score=64.26 Aligned_cols=26 Identities=38% Similarity=0.667 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.|.++.|+||||+|||||++.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999999987654
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.16 E-value=0.0013 Score=61.03 Aligned_cols=26 Identities=27% Similarity=0.602 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+|-.++|.||+||||||+.+.|+-.+
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999754
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.13 E-value=0.001 Score=61.88 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRIA 110 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~~ 110 (820)
..+.|.||+|+|||||++.++..+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~ 26 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3588999999999999999998763
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.12 E-value=0.0013 Score=59.77 Aligned_cols=33 Identities=27% Similarity=0.470 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCE
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGK 123 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~ 123 (820)
+++.|.|++|||||||.+.|.... .|.+.++..
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~-----~~~~~~~~d 35 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN-----PGFYNINRD 35 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS-----TTEEEECHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC-----CCCEEechH
Confidence 478899999999999999876422 255655543
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.07 E-value=0.0016 Score=60.25 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+++.|.|++||||||+.+.|+..+
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999976
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.99 E-value=0.0016 Score=59.93 Aligned_cols=24 Identities=42% Similarity=0.699 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++.|.||+||||||+.+.|+..+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999865
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.99 E-value=0.0015 Score=60.33 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 003437 88 MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~~ 109 (820)
++|+||+||||||+.+.|+-.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998754
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.96 E-value=0.00071 Score=67.07 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEE
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVR 119 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~ 119 (820)
+|..++++|+||+|||||+|.|.|-.. -..|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH--hhhcccc
Confidence 478999999999999999999998542 2246664
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.89 E-value=0.0018 Score=58.81 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47788999999999999999765
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.87 E-value=0.002 Score=68.42 Aligned_cols=27 Identities=33% Similarity=0.609 Sum_probs=22.9
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHH
Q 003437 80 GQAIRGEIMAIMGPSGAGKSTFLDALA 106 (820)
Q Consensus 80 ~~i~~Ge~~allGpnGsGKSTLl~~L~ 106 (820)
+.+.++.+++|+|||||||||+|.+|+
T Consensus 20 i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 20 VGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 444556699999999999999999985
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.87 E-value=0.0021 Score=59.86 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+++|.|++||||||+++.|+-.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998765
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.84 E-value=0.0017 Score=61.89 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||+|.|+|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999853
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.77 E-value=0.0021 Score=60.70 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++||-||+|||||||.+.|+-.+
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.76 E-value=0.0015 Score=61.73 Aligned_cols=26 Identities=42% Similarity=0.498 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+|-++.|+|++||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998765
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.54 E-value=0.003 Score=61.81 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
+++|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.54 E-value=0.0019 Score=61.04 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999884
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.49 E-value=0.0032 Score=59.89 Aligned_cols=25 Identities=20% Similarity=0.419 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+++|+||+||||||+.+.|+-.+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998643
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.48 E-value=0.0041 Score=58.85 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=25.8
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 80 GQAIRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 80 ~~i~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
+=+.+|+++.|.||+|+|||||+.-++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999877754
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.46 E-value=0.0028 Score=59.45 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||+|.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999853
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.46 E-value=0.0035 Score=58.28 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.46 E-value=0.0032 Score=59.92 Aligned_cols=22 Identities=50% Similarity=0.777 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 003437 88 MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~~ 109 (820)
++|+||||||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999997754
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.39 E-value=0.004 Score=58.98 Aligned_cols=24 Identities=17% Similarity=0.495 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+.|+||||+|||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999988643
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.32 E-value=0.0029 Score=60.38 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+.+.++.|+||+||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999999744
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.28 E-value=0.0042 Score=57.85 Aligned_cols=22 Identities=45% Similarity=0.777 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|.+|+|||||+|.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.28 E-value=0.0041 Score=59.23 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-.++.|+||+||||||+.+.|+-.+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999999855
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.25 E-value=0.004 Score=59.49 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|||||||++.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.24 E-value=0.0042 Score=57.59 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 003437 88 MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~~ 109 (820)
+.|+|++||||||+.+.|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999999865
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.21 E-value=0.0042 Score=59.31 Aligned_cols=22 Identities=50% Similarity=0.727 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 003437 88 MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~~ 109 (820)
++|+||||||||||++.|+-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987643
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.21 E-value=0.0043 Score=58.33 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999853
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.19 E-value=0.0042 Score=56.21 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999853
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.16 E-value=0.0053 Score=58.14 Aligned_cols=25 Identities=40% Similarity=0.627 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
+|=.+.|+||+||||||+.+.|+-.
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHHH
Confidence 5667889999999999999999963
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.14 E-value=0.005 Score=57.65 Aligned_cols=23 Identities=43% Similarity=0.655 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++|+|||||+|.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999963
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.13 E-value=0.0044 Score=56.11 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
++|+|++|+|||||++.|.+-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999874
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.09 E-value=0.0033 Score=59.03 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
+||+|.+|+|||||+|.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999984
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.08 E-value=0.0034 Score=58.29 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.|.+-
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.03 E-value=0.0055 Score=58.08 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.|+||+||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998643
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.03 E-value=0.0047 Score=58.50 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+.|+||+||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998643
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.00 E-value=0.0055 Score=59.15 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++||-|++|||||||.+.|+-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.97 E-value=0.0054 Score=57.30 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 003437 88 MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~~ 109 (820)
+.|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998743
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.96 E-value=0.0059 Score=55.77 Aligned_cols=23 Identities=52% Similarity=0.738 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|++|+|||||++.|+|..
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.95 E-value=0.0053 Score=55.93 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 003437 88 MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~~ 109 (820)
++|+|.+|+|||||++.+.+..
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998854
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.94 E-value=0.0057 Score=56.95 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-+.|+|++||||||+.+.|+-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999755
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.82 E-value=0.0063 Score=56.32 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 003437 88 MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~~ 109 (820)
+.|+|++||||||+.+.|+-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5677999999999999999865
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.65 E-value=0.0074 Score=56.17 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.|.|++||||||+.+.|+.++
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67889999999999999999876
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.64 E-value=0.0039 Score=58.04 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|++++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998853
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.62 E-value=0.0066 Score=60.26 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+.|.||+|||||||.+.|++.+
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999966
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.62 E-value=0.0081 Score=56.42 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+.|+||+||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999754
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.62 E-value=0.0079 Score=58.10 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+++|.||+||||||+.+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999754
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.58 E-value=0.0079 Score=56.47 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
+-+++.++|++||||||+.+-++-
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999998754
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.52 E-value=0.0088 Score=56.90 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+++++|.+|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999654
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.47 E-value=0.008 Score=55.23 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.|.+.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 3789999999999999999874
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.44 E-value=0.0089 Score=56.00 Aligned_cols=22 Identities=41% Similarity=0.702 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 003437 88 MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~~ 109 (820)
+.|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998744
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.40 E-value=0.0096 Score=57.15 Aligned_cols=23 Identities=48% Similarity=0.801 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+++|.||+||||||+.+.|+-.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 88999999999999999999854
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.30 E-value=0.0098 Score=55.57 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+.|+||+||||||..+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999998643
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.26 E-value=0.0097 Score=55.88 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
+||+|+..||||||+|.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999974
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.18 E-value=0.0034 Score=57.44 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 003437 88 MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~~ 109 (820)
++|+|++|+|||||+|.|+|..
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999853
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.17 E-value=0.012 Score=56.01 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+.|+||+||||||+.+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999754
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.16 E-value=0.0098 Score=59.57 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999964
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.12 E-value=0.67 Score=45.98 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G 107 (820)
..+++|.|..|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998865
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.11 E-value=0.011 Score=56.71 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
-++|+|++|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.08 E-value=0.013 Score=55.01 Aligned_cols=23 Identities=43% Similarity=0.689 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999754
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.02 E-value=0.0075 Score=62.64 Aligned_cols=30 Identities=23% Similarity=0.505 Sum_probs=25.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRIAQ 111 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~~~ 111 (820)
++.|.-+.|.|+.||||||||++|.+.+++
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~ 192 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPK 192 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhccc
Confidence 445666899999999999999999998743
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.99 E-value=0.012 Score=54.42 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|.+|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999984
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.97 E-value=0.014 Score=56.60 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=24.7
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 80 GQAIRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 80 ~~i~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
+=+.+|+++.|.||+|+|||||..-++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4589999999999999999999977654
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.88 E-value=0.013 Score=55.37 Aligned_cols=21 Identities=43% Similarity=0.599 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 003437 87 IMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G 107 (820)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.81 E-value=0.015 Score=56.22 Aligned_cols=43 Identities=28% Similarity=0.404 Sum_probs=29.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPV 125 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~ 125 (820)
++|-++-|.|.||||||||.+.|.-.+......-.+.++|..+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence 4688999999999999999999985431100012455666543
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.75 E-value=0.012 Score=55.65 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-+++|-|+.|||||||++.|+..+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998755
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.64 E-value=0.015 Score=53.41 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
++|+|++|+|||||++.+.+-
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999988763
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.47 E-value=0.016 Score=60.26 Aligned_cols=26 Identities=38% Similarity=0.592 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..-.+||.||+|||||||++.|...+
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998654
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.43 E-value=0.02 Score=56.19 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+.|.||+|+||||++++|+...
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999855
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.29 E-value=0.014 Score=56.71 Aligned_cols=26 Identities=38% Similarity=0.459 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.+++|-|+-||||||+++.|+..+
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999999876
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.29 E-value=0.019 Score=55.83 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+.|.||+|+|||||+++|+..+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999999754
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.18 E-value=0.02 Score=55.90 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+.+.||+|+|||||.++|+..+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHhcc
Confidence 37899999999999999999754
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.12 E-value=0.019 Score=61.27 Aligned_cols=22 Identities=41% Similarity=0.773 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 003437 88 MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~~ 109 (820)
+||+|.+|+|||||+|.|.|..
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999964
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.11 E-value=0.023 Score=54.91 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 83 IRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 83 ~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++|-+++|-|+-||||||+.+.|...+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998755
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.08 E-value=0.022 Score=55.90 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
.+.++.|.||+|+|||||++.++-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 5678999999999999999988754
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.07 E-value=0.021 Score=52.74 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
++++|++|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988753
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.07 E-value=0.021 Score=52.77 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
++|+|++|+|||||++.+.+-
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.04 E-value=0.024 Score=54.31 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+|.+++|-|+.||||||+++.|+-.+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998755
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.04 E-value=0.018 Score=53.28 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|++|+|||||++.|.+-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999773
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.03 E-value=0.021 Score=55.87 Aligned_cols=22 Identities=32% Similarity=0.729 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 003437 88 MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~~ 109 (820)
+.+.||+|+|||||.++|++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999854
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.02 E-value=0.026 Score=54.46 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=24.5
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 80 GQAIRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 80 ~~i~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
+=+.+|+++.|.|++|+|||||+--++-
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4589999999999999999999866654
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.01 E-value=0.02 Score=58.81 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+.-+.+.||+|+|||+|.|+|+...
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhcc
Confidence 3456789999999999999999864
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.99 E-value=0.02 Score=52.58 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
++|+|++|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 799999999999999988764
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.93 E-value=0.027 Score=54.87 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=23.1
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHH
Q 003437 80 GQAIRGEIMAIMGPSGAGKSTFLDALA 106 (820)
Q Consensus 80 ~~i~~Ge~~allGpnGsGKSTLl~~L~ 106 (820)
+=+.+|+++.|.||+|+|||||.--++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 358899999999999999999976443
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.72 E-value=0.026 Score=55.14 Aligned_cols=22 Identities=36% Similarity=0.738 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
++||+|...||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999874
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.67 E-value=0.026 Score=51.73 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 003437 88 MAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G 107 (820)
++|+|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987775
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.64 E-value=0.027 Score=53.96 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 003437 87 IMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G 107 (820)
++||.|+.||||||+.+++.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.63 E-value=0.026 Score=52.36 Aligned_cols=21 Identities=33% Similarity=0.669 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
++|+|++|+|||||++.+.+-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987663
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=92.58 E-value=0.028 Score=58.13 Aligned_cols=59 Identities=20% Similarity=0.150 Sum_probs=36.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEc----CccHHHHhhcCEEEEEe
Q 003437 215 HKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIH----QPSYRIQMLLDRIIVLA 273 (820)
Q Consensus 215 ~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H----~~~~~i~~~~D~v~lL~ 273 (820)
.+|.+.+-.=||.|-...-...+.+.+.-+...|.-+|++.. |.+.++..++|..+++-
T Consensus 110 ~~~~~~ir~~~~~~~~gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~~~~D~~v~v~ 172 (323)
T d2qm8a1 110 IDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLM 172 (323)
T ss_dssp GCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEE
T ss_pred cccceeeccccccccccchhHHHHHHHHhhccCCCCeEEEeehhhhhhhhhhhcccceEEEEe
Confidence 355666666666666666666666666655555665555554 44556677788765553
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.47 E-value=0.028 Score=54.40 Aligned_cols=22 Identities=36% Similarity=0.670 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 003437 88 MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~~ 109 (820)
+.|.||+|+|||||+++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999754
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.43 E-value=0.035 Score=53.66 Aligned_cols=26 Identities=27% Similarity=0.577 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.+++++||+|+||||.+-=|+-..
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999876666543
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.38 E-value=0.031 Score=54.33 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=24.6
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 80 GQAIRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 80 ~~i~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
+=+.+|+++.|.||+|+|||||.-.++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999999877764
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.027 Score=51.64 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
-++|+|++|+|||||++.+.+-
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999997653
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.35 E-value=0.028 Score=55.72 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-+.|.||+|+|||+|.++|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 47899999999999999999853
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=92.34 E-value=0.03 Score=57.47 Aligned_cols=43 Identities=26% Similarity=0.332 Sum_probs=31.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCCCCCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFP 145 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~~l~~ 145 (820)
++||-|++|||||||.+.|..++.... ....+..+.+|+.+.+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~----------------~~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWP----------------EHRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTST----------------TCCCEEEEEGGGGBCC
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhc----------------CCCceEEEeeeeeECC
Confidence 899999999999999999988763110 1123567888887665
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.31 E-value=0.028 Score=51.49 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
++++|.+|+|||||++.+.+-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999987763
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.30 E-value=0.033 Score=52.06 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
++|+|++|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999998863
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.28 E-value=0.034 Score=51.17 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
++|+|.+|+|||||++-+.+-
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999987763
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.12 E-value=0.033 Score=51.50 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
++|+|++|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999987653
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.04 E-value=0.037 Score=50.91 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 003437 88 MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~~ 109 (820)
++|+|.+|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998854
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.03 E-value=0.065 Score=50.30 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=26.0
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
.|+..-..+ .|.-+.|.|+||+|||||.-.|.-
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 455544555 788999999999999999977764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.03 E-value=0.032 Score=51.39 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 003437 87 IMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G 107 (820)
-++|+|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999987765
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.01 E-value=0.042 Score=50.75 Aligned_cols=20 Identities=25% Similarity=0.639 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 003437 88 MAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G 107 (820)
++|+|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.98 E-value=0.033 Score=51.38 Aligned_cols=21 Identities=19% Similarity=0.567 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
++|+|.+|+|||||++.+.+-
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988863
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.96 E-value=0.04 Score=53.25 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRIA 110 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~~ 110 (820)
+|.+++|=|+-||||||+.+.|+-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 589999999999999999999997663
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.93 E-value=0.042 Score=53.78 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
...+.|.||+|+||||+++.|+..+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999866
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.91 E-value=0.037 Score=50.73 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|.+|+|||||++-+.+-.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 37899999999999999887743
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.87 E-value=0.045 Score=50.45 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=25.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|.+++|-|+=|||||||.|.++.-+
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 3689999999999999999999998755
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.85 E-value=0.037 Score=51.64 Aligned_cols=20 Identities=30% Similarity=0.708 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 003437 88 MAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G 107 (820)
++|+|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=91.81 E-value=0.042 Score=52.73 Aligned_cols=21 Identities=48% Similarity=0.692 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 003437 87 IMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G 107 (820)
++||.|+.||||||..+++..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999874
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.73 E-value=0.039 Score=50.56 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
++|+|.+|+|||||++.+.+-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999888763
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.69 E-value=0.04 Score=50.20 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 003437 88 MAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G 107 (820)
++|+|..|+|||||++-+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.58 E-value=0.022 Score=57.87 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++||-|+|||||||+.+.|...+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 79999999999999999998755
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.51 E-value=0.04 Score=50.27 Aligned_cols=21 Identities=14% Similarity=0.438 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
++|+|..|+|||||++.+.+-
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988763
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=91.45 E-value=0.027 Score=52.52 Aligned_cols=21 Identities=43% Similarity=0.543 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 003437 87 IMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G 107 (820)
-++|+|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 367999999999999998754
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.42 E-value=0.048 Score=50.41 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 003437 88 MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~~ 109 (820)
++|+|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6899999999999999998854
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.42 E-value=0.044 Score=50.84 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
++|+|..|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988763
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.28 E-value=0.042 Score=51.87 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
++|+|+.|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 889999999999999987753
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.26 E-value=0.047 Score=52.68 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 003437 88 MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~~ 109 (820)
+.+.||+|+||||+.++|+..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 6789999999999999998744
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.25 E-value=0.043 Score=54.94 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 84 RGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 84 ~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+..-+.|.||+|+|||+|.++|++.+
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHh
Confidence 44558899999999999999999965
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.19 E-value=0.049 Score=49.92 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 003437 88 MAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G 107 (820)
++|+|.+|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=91.10 E-value=0.058 Score=52.02 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
..+++++||+|+||||.+-=|+-++
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999887777654
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.03 E-value=0.047 Score=50.56 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
-++|+|.+|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999888764
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.99 E-value=0.052 Score=49.70 Aligned_cols=20 Identities=15% Similarity=0.395 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 003437 88 MAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G 107 (820)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998765
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.94 E-value=0.048 Score=50.24 Aligned_cols=20 Identities=30% Similarity=0.635 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 003437 88 MAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G 107 (820)
++|+|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.85 E-value=0.051 Score=54.05 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-+.|.||+|+|||+|.++++...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 37899999999999999999854
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.84 E-value=0.096 Score=49.05 Aligned_cols=26 Identities=38% Similarity=0.353 Sum_probs=22.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
.-.|.-++|.|+||+|||||.-.|..
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 34688999999999999999877664
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=90.77 E-value=0.036 Score=51.13 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 003437 87 IMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G 107 (820)
-+.|+|++|+|||||++.+.+
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 367999999999999999875
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.64 E-value=0.054 Score=50.00 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 003437 87 IMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G 107 (820)
.++|+|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999988765
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.63 E-value=0.059 Score=49.48 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
++|+|++|+|||||++-+.+-
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988863
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.61 E-value=0.064 Score=50.72 Aligned_cols=23 Identities=43% Similarity=0.787 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+++|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999765
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.61 E-value=0.053 Score=52.91 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=28.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCcc
Q 003437 216 KPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPS 259 (820)
Q Consensus 216 ~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 259 (820)
+.+++++||.-. |.......+.+.+.... ....+|+++++++
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhccccccc-ccccceeeecccc
Confidence 567999999965 77777666666554322 2456788888875
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.54 E-value=0.059 Score=51.88 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 003437 88 MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~~ 109 (820)
+.+.||+|+|||||+++|+..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 6799999999999999999743
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.52 E-value=0.059 Score=50.17 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|.+|+|||||++-+.+-
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999887764
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.50 E-value=0.06 Score=49.34 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
.++|+|.+|+|||||++-+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4689999999999999976653
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.49 E-value=0.039 Score=50.98 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=8.6
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 003437 88 MAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G 107 (820)
++|+|..|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987775
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.46 E-value=0.056 Score=50.64 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCce
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRIAQGSLEG 116 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~~~~~~~G 116 (820)
-+.|+|.+|+|||||++-+.-.....|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 368999999999999998843323345556
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.32 E-value=0.046 Score=53.78 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++.|.||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999999765
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.21 E-value=0.066 Score=49.12 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
-++|+|.+|+|||||++-+.+-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999888753
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.20 E-value=0.071 Score=53.91 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
++||-|+.|||||||.+.|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998886543
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.19 E-value=0.043 Score=50.64 Aligned_cols=20 Identities=30% Similarity=0.652 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 003437 88 MAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G 107 (820)
++|+|++|+|||||++.+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987655
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.14 E-value=0.076 Score=51.28 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+++++||+|+||||.+-=|+-++
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999886666544
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.09 E-value=0.069 Score=49.00 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 003437 88 MAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G 107 (820)
++|+|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997654
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=90.05 E-value=0.082 Score=51.14 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-.+++++||+|+||||.+-=|+-+.
T Consensus 11 p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 11 PFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999876666543
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.00 E-value=0.071 Score=53.90 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=25.6
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 80 GQAIRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 80 ~~i~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
+.|.+|+..+|+|++|+|||||+..|+.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 4677899999999999999999999886
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.00 E-value=0.072 Score=48.98 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
++|+|.+|+|||||++-+.+-
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 678999999999999987763
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=89.83 E-value=0.074 Score=48.82 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 003437 87 IMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G 107 (820)
.++|+|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998765
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=89.66 E-value=0.13 Score=47.87 Aligned_cols=32 Identities=34% Similarity=0.301 Sum_probs=24.7
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 75 LHDISGQAIRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 75 L~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
|+. ++..-.|.-+.|.|+||+|||||.-.|..
T Consensus 6 ~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 444 34445788999999999999999866654
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.63 E-value=0.066 Score=57.62 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=29.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceEEEECCEeCCCccccceEEEEccCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDD 141 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~~ 141 (820)
=+.++||+|+|||-|.|.||+.+.- | -+..+...++ ..|||-.|-
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-P---Fv~~daT~fT------eaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-P---FIKVEATKFT------EVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-C---EEEEEGGGGC----------CCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC-C---EEEeecceee------ecceeecch
Confidence 4789999999999999999998732 2 2444443332 268998763
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=89.60 E-value=0.083 Score=49.85 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 003437 88 MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~~ 109 (820)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999864
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=89.60 E-value=0.044 Score=56.47 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRIA 110 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~~ 110 (820)
-+.|.||+|+|||||+|.|+++++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCC
Confidence 579999999999999999999884
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.41 E-value=0.083 Score=49.09 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
-++|+|.+|+|||||++-+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999977663
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=89.31 E-value=0.081 Score=51.07 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=16.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-.+++++||+|+||||.+-=|+-..
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999876666543
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.08 E-value=0.085 Score=49.23 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 003437 88 MAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G 107 (820)
++|+|.+|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 89999999999999988765
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.98 E-value=0.093 Score=47.88 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
++|+|.+|+|||||++-+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999987653
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.86 E-value=0.09 Score=53.66 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 003437 88 MAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~~ 109 (820)
+||+|.+-+|||||+|+|+|-.
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999953
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.80 E-value=0.084 Score=53.16 Aligned_cols=33 Identities=33% Similarity=0.536 Sum_probs=26.0
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 74 LLHDISGQAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 74 iL~~vs~~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+|+.++--| -+++|+||-++|||||||.|.|..
T Consensus 24 ~l~~~~~~v---~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAITQPM---VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCCSBE---EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHcCCCCE---EEEEEECCCCCCHHHHHHHHcCCC
Confidence 555554322 489999999999999999999854
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=88.72 E-value=0.13 Score=51.25 Aligned_cols=29 Identities=31% Similarity=0.502 Sum_probs=25.3
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 80 GQAIRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 80 ~~i~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
+=+.+|.++-|.||+|+|||||+-.++.-
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHH
Confidence 68899999999999999999998666543
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.43 E-value=0.1 Score=50.32 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 003437 87 IMAIMGPSGAGKSTFLDALA 106 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~ 106 (820)
.+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999998774
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.39 E-value=0.099 Score=48.97 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
++|+|.+|+|||||++-+.+-
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999877653
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.30 E-value=0.1 Score=52.84 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|.-+||||||+|+|.|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=88.27 E-value=0.11 Score=54.93 Aligned_cols=52 Identities=21% Similarity=0.312 Sum_probs=38.2
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccHHHHhhcCE
Q 003437 208 SIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSYRIQMLLDR 268 (820)
Q Consensus 208 ~ia~aL~~~P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~D~ 268 (820)
++..+|=++|++++..|.. |..++...++ .+..|..|+.+.|-.+. ....+|
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~~----aa~tGhlV~tTlHa~~a--~~~~~R 270 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAVQ----ASLTGHLVMSTLHTNTA--VGAVTR 270 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHHH----HHHTTCEEEEEECCSSS--HHHHHH
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHHH----HHhcCCeEEEEeccCch--Hhhhhh
Confidence 4556677899999999998 6666655554 46679999999998763 344455
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.09 E-value=0.1 Score=52.46 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.++|+|.-.||||||+|+|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999964
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=88.02 E-value=0.1 Score=52.85 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
-+||+|.+.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999985
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.92 E-value=0.12 Score=48.03 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 003437 87 IMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G 107 (820)
-++|+|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999976654
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.35 E-value=0.14 Score=52.26 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 85 GEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 85 Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
...+.++||+|+|||.|.+.|+-.+
T Consensus 52 ~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 52 VGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCcchhHHHHHHHHhhc
Confidence 3467899999999999999999865
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=86.52 E-value=0.12 Score=51.58 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 003437 87 IMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G 107 (820)
-++|+|+.|+|||||+..|..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 379999999999999999943
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.41 E-value=0.16 Score=48.46 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 003437 88 MAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G 107 (820)
++|+|..++|||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999965
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=86.31 E-value=0.15 Score=53.20 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=25.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 82 AIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 82 i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
+.++..+.+.||+|+|||||.++|++.+
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3677899999999999999999999976
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.27 E-value=0.18 Score=48.72 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 003437 86 EIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G 107 (820)
.++||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999975
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=85.46 E-value=0.19 Score=50.29 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
-+||+|-+-+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999984
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.26 E-value=0.2 Score=46.40 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
+.|+|..|+|||||++-+..-
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999988653
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.05 E-value=0.24 Score=46.95 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-++|+|.-.+|||||++.|.|..
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhh
Confidence 48999999999999999999865
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.96 E-value=0.21 Score=45.94 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 003437 87 IMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G 107 (820)
-+.|+|..|+|||||++-+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 368999999999999988764
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.69 E-value=0.28 Score=49.00 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=24.8
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 80 GQAIRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 80 ~~i~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
+.+.+|+..+|+|++|+|||||+..|+-
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 5788999999999999999999877764
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.67 E-value=0.23 Score=47.89 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 86 EIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+++|=|+-||||||+++.|+-.+
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 478899999999999999999765
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=84.46 E-value=0.23 Score=47.63 Aligned_cols=47 Identities=9% Similarity=0.065 Sum_probs=38.1
Q ss_pred hcCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 214 IHKPSLLFLDEPTSG-LDSTSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 214 ~~~P~lLllDEPtsg-LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
+.+.++|++|+--.= =+...+..+..++..+.+.|+.+|+++..+..
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~ 142 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 142 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcch
Confidence 557899999987543 35778888999999998889999999987653
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=84.37 E-value=0.24 Score=50.73 Aligned_cols=29 Identities=21% Similarity=0.473 Sum_probs=23.3
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 003437 80 GQAIRGEIMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 80 ~~i~~Ge~~allGpnGsGKSTLl~~L~G~~ 109 (820)
....+| .+.+.||+|+|||.|.+.|++..
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 444444 66778999999999999999864
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.15 E-value=0.19 Score=48.54 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~ 108 (820)
++.|.|.=||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6789999999999999988763
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=84.03 E-value=0.31 Score=48.58 Aligned_cols=29 Identities=38% Similarity=0.625 Sum_probs=26.1
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 003437 80 GQAIRGEIMAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 80 ~~i~~Ge~~allGpnGsGKSTLl~~L~G~ 108 (820)
+=++.|.++-|-||+|||||||+-.++..
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHH
Confidence 67899999999999999999999777764
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.00 E-value=0.26 Score=49.10 Aligned_cols=28 Identities=32% Similarity=0.550 Sum_probs=23.9
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 003437 80 GQAIRGEIMAIMGPSGAGKSTFLDALAG 107 (820)
Q Consensus 80 ~~i~~Ge~~allGpnGsGKSTLl~~L~G 107 (820)
+=++.|.++-|.||+|+|||||+-.++.
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHH
Confidence 5788999999999999999999755543
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.88 E-value=0.24 Score=49.62 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 003437 88 MAIMGPSGAGKSTFLDALA 106 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~ 106 (820)
++|+|+.|||||||...|.
T Consensus 9 i~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 7999999999999999883
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=81.49 E-value=0.32 Score=51.24 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=17.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 003437 86 EIMAIMGPSGAGKSTFLDALA 106 (820)
Q Consensus 86 e~~allGpnGsGKSTLl~~L~ 106 (820)
..+.|+|++|||||++++.|.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHH
Confidence 468999999999999987544
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=81.47 E-value=0.37 Score=45.78 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
.+.+.||+|+||||+.+.++..+
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHhc
Confidence 58899999999999999999865
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=81.05 E-value=0.41 Score=46.36 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=28.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEEcCccH
Q 003437 217 PSLLFLDEPTSGLDSTSAYSVVEKVKDIARTGSIVLMTIHQPSY 260 (820)
Q Consensus 217 P~lLllDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 260 (820)
.+++|+||.-. |+...+..+.+.|.+.. .+..+|+++++++.
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~~ 157 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPP-EHVKFLLATTDPQK 157 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCC-TTEEEEEEESCGGG
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCC-CCeEEEEEcCCccc
Confidence 46999999964 77777666555554321 35678888887754
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.85 E-value=0.39 Score=47.77 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-+.|+||+|.|||+++.-|+.++
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHH
Confidence 56899999999999999999876
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=80.77 E-value=0.38 Score=45.43 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 003437 88 MAIMGPSGAGKSTFLDALAGR 108 (820)
Q Consensus 88 ~allGpnGsGKSTLl~~L~G~ 108 (820)
+||+|.-.+|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 799999999999999999874
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| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.46 E-value=0.43 Score=45.11 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 003437 87 IMAIMGPSGAGKSTFLDALAGRI 109 (820)
Q Consensus 87 ~~allGpnGsGKSTLl~~L~G~~ 109 (820)
-..|+||+|.|||+++.-|+.++
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHH
Confidence 46899999999999999999876
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