Citrus Sinensis ID: 003454

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------82

MDRFIDDLPPMDLMRSEKMMFVQLIIPVESAQRAVSYLGELGLLQFRDLNSDKSPFQRTFVNQVKRCGEMSRKLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNELLEFKMVLQKAGGFLVSSNGHAVAEETELSENVYSMNDYADTASLLEQDIRAGPSNQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGSAYRCRDTTCSDAYTAGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDDLGENELFWGQRPLQILLLLLATVAVPWMLFPKPFILRKLHTERFQGRTYGILGTSEMDLEVEPDSARQHHEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFALINDEED

ccccccccccccccccccccEEEEEEccccHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcccccccccccccHHHHHHHHHcccccccccccEEEEEEcccHHHHHHHHHHHHHcccEEEEEccccccccccccccccEEEEEEEEEEcHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEcccHHHHHHHHHHHHccccccEEEEEccccccccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc

cHHHHHccccccHcccHHHHHHHHHccHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccccccccHccccccccccccccEEEEEEEccHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccEEEEEEEEEEcHHHHHHHHHHHHHHccccEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccHccHHHHHHHHHHHHHHccccccHHHEEccccccccccccccHHHHHHHHHHHHHccccEEEcccccEEEEEcHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHEHHHHHHHHHcHEEccccccccEEcccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccHHHHHHHEEHEEEEHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcccc

mdrfiddlppmdlmRSEKMMFVQLIIPVESAQRAVSYLGELGllqfrdlnsdkspfqrTFVNQVKRCGEMSRKLRFFKEQINkaglqssvhpvsgpdldlEELEIQLAEHEHELIETNSNSEKLRQTYNELLEFKMVLQKAGGflvssnghavaeetelsenvysmndyaDTASLLEQdiragpsnqsglrFISGIICKSKVLRFERMLFRATRgnmlfnqapadeeimdpvTAEMVEKTIFVVFFSGEQARTKILKICEafgancypvsedltKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTkkclvgegwcpiFAKAQIQEVLQRatfdsnsqvGTIFHVmdsmespptyfrtnrFTNAFQEIVDAYGvaryqeanpavyaVITFPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGliyneffsvpyhifggsayrcrdttcsdAYTAglvkyrepypfgvdpswrgsrselpflnSLKMKMSILLGVTQMNLGIILSYFdarffgssldirYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFlsptddlgenelfwgqRPLQILLLLLATVavpwmlfpkpfilrKLHTerfqgrtygilgtsemdlevepdsarqhhedfnfsEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQnkfyhgdgykfrpfsfalindeed

mdrfiddlppmDLMRSEKMMFVQLIIPVESAQRAVSYLGELGLLQFrdlnsdkspfqRTFVNQVKRCGEMSRKLRFFKEQInkaglqssvhpvsGPDLDLEELEIQLAEHEHelietnsnsekLRQTYNELLEFKMVLQKAGGFLVSSNGHAVAEETELSENVYSMNDYADTASLLEQDIRAgpsnqsglrfisgiickSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALtsigfhltkwmNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGSAYRCRDTTCSDAYTAGLVKYREPYPfgvdpswrgsRSELPFLNSLKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDDLGENELFWGQRPLQILLLLLATVAVPWMLFPKPFILRKLHTERFQGRTYGILGTSEMDLEVEPDSARQHHEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFALINDEED

MDRFIDDLPPMDLMRSEKMMFVQLIIPVESAQRAVSYLGELGLLQFRDLNSDKSPFQRTFVNQVKRCGEMSRKLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNELLEFKMVLQKAGGFLVSSNGHAVAEETELSENVYSMNDYADTASLLEQDIRAGPSNQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGSAYRCRDTTCSDAYTAGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDDLGENELFWGQRPLQIlllllATVAVPWMLFPKPFILRKLHTERFQGRTYGILGTSEMDLEVEPDSARQHHEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFALINDEED

*****************KMMFVQLIIPVESAQRAVSYLGELGLLQFRDLNSDKSPFQRTFVNQVKRCGEMSRKLRFFKEQI********************************************QTYNELLEFKMVLQKAGGFLVSSNGHAVA*******NVYSMNDYADTASLL***********SGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGSAYRCRDTTCSDAYTAGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDDLGENELFWGQRPLQILLLLLATVAVPWMLFPKPFILRKLHTERFQGRTYGILGTSE**************EDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFALI*****

******DLPPMDLMRSEKMMFVQLIIPVESAQRAVSYLGELGLLQFRDLNSDKSPF**T**NQVKRCGEMSRKLRFFKEQIN***************LDLEELEIQLAEHEHELIETNSNSEKLRQTYNELLEFKMVLQKAGGFLVSSNGHAV******************************PSNQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFAVMFGDWGHGICLLLGALVLIARERKL*****GSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGSAYRCRDTTCSDAYTAGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDDLGENELFWGQRPLQILLLLLATVAVPWMLFPKPFILRK*********************************DFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFALI*****

MDRFIDDLPPMDLMRSEKMMFVQLIIPVESAQRAVSYLGELGLLQFRDLNSDKSPFQRTFVNQVKRCGEMSRKLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNELLEFKMVLQKAGGFLVSSNGH**********************************NQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGSAYRCRDTTCSDAYTAGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDDLGENELFWGQRPLQILLLLLATVAVPWMLFPKPFILRKLHTERF***************************DFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFALIN****

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MDRFIDDLPPMDLMRSEKMMFVQLIIPVESAQRAVSYLGELGLLQFRDLNSDKSPFQRTFVNQVKRCGEMSRKLRFFKEQINKAGLQSSVHPVSGPDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYNELLEFKMVLQKAGGFLVSSNGHAVAEETELSENVYSMNDYADTASLLEQDIRAGPSNQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGSAYRCRDTTCSDAYTAGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDDLGENELFWGQRPLQILLLLLATVAVPWMLFPKPFILRKLHTERFQGRTYGILGTSEMDLEVEPDSARQHHEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFALINDEED

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		819	2.2.26 [Sep-21-2011]
Q8RWZ7		817	Vacuolar proton ATPase a1	yes	no	0.993	0.996	0.823	0.0
Q9SJT7		821	Vacuolar proton ATPase a2	no	no	0.985	0.982	0.631	0.0
Q8W4S4		821	Vacuolar proton ATPase a3	no	no	0.985	0.982	0.639	0.0
Q54E04		815	Vacuolar proton transloca	yes	no	0.948	0.953	0.438	0.0
Q9Z1G4		839	V-type proton ATPase 116	yes	no	0.967	0.943	0.430	0.0
Q8AVM5		831	V-type proton ATPase 116	N/A	no	0.956	0.942	0.421	0.0
Q9HBG4		840	V-type proton ATPase 116	yes	no	0.964	0.940	0.427	1e-180
A1A5G6		837	V-type proton ATPase 116	yes	no	0.952	0.931	0.421	1e-179
P25286		838	V-type proton ATPase 116	yes	no	0.958	0.936	0.426	1e-178
Q5R422		837	V-type proton ATPase 116	yes	no	0.960	0.940	0.419	1e-177

>sp\|Q8RWZ7\|VHAA1_ARATH Vacuolar proton ATPase a1 OS=Arabidopsis thaliana GN=VHA-a1 PE=1 SV=1	Back alignment and function desciption

 Score = 1391 bits (3601), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 673/817 (82%), Positives = 749/817 (91%), Gaps = 3/817 (0%)

Query: 1   MDRFIDDLPPMDLMRSEKMMFVQLIIPVESAQRAVSYLGELGLLQFRDLNSDKSPFQRTF 60
           M+ F+D LP MDLMRSEKM  VQLIIPVESA R+++YLGELGLLQFRDLN+DKSPFQRTF
Sbjct: 1   MEEFLDKLPQMDLMRSEKMTLVQLIIPVESAHRSITYLGELGLLQFRDLNADKSPFQRTF 60

Query: 61  VNQVKRCGEMSRKLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNSN 120
            NQVKRCGEMSRKLRFFK+QI+KAGL+ S      PD+ L +LE QLA+HEHE++E NSN
Sbjct: 61  ANQVKRCGEMSRKLRFFKDQIDKAGLRCSPRLEIEPDIALGDLERQLADHEHEVLEMNSN 120

Query: 121 SEKLRQTYNELLEFKMVLQKAGGFLVSSNGHAVAEETELSENVYSMNDYADTASLLEQDI 180
           SEKLRQTYNELLEFK+VL+KA GFLVSSN HA+ EE EL E+ YS N + +TASLLEQ++
Sbjct: 121 SEKLRQTYNELLEFKIVLEKASGFLVSSNTHAIGEEIELHESTYSNNGFIETASLLEQEM 180

Query: 181 RAGPSNQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKT 240
             G SNQSGLRFISGII K K+L+FERMLFRATRGNMLFNQ  +DEEIMDP T+EMVEK 
Sbjct: 181 NPGHSNQSGLRFISGIINKDKLLKFERMLFRATRGNMLFNQTTSDEEIMDPSTSEMVEKV 240

Query: 241 IFVVFFSGEQARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRH 300
           +FVVFFSGEQARTKILKICEAFGANCYPV ED TKQRQ+ REVLSRLS+LEATLDAG RH
Sbjct: 241 VFVVFFSGEQARTKILKICEAFGANCYPVPEDTTKQRQLTREVLSRLSDLEATLDAGTRH 300

Query: 301 RNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQ 360
           RN AL S+G+ LT W+  VRREKAVYDTLNMLNFDVTKKCLVGEGWCP FAK QI EVLQ
Sbjct: 301 RNNALNSVGYSLTNWITTVRREKAVYDTLNMLNFDVTKKCLVGEGWCPTFAKTQIHEVLQ 360

Query: 361 RATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVIT 420
           RATFDS+SQVG IFHVM ++ESPPTYFRTN+ TNAFQEI+DAYGVARYQEANPAVY+V+T
Sbjct: 361 RATFDSSSQVGVIFHVMQAVESPPTYFRTNKLTNAFQEIIDAYGVARYQEANPAVYSVVT 420

Query: 421 FPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIY 480
           +PFLFAVMFGDWGHG+CLLLGAL L+ARERKL  QKLGSFMEMLFGGRYV+LLM+LFSIY
Sbjct: 421 YPFLFAVMFGDWGHGLCLLLGALYLLARERKLSTQKLGSFMEMLFGGRYVILLMALFSIY 480

Query: 481 CGLIYNEFFSVPYHIFGGSAYRCRDTTCSDAYTAGLVKYREPYPFGVDPSWRGSRSELPF 540
           CGLIYNEFFSVP+HIFGGSAY+CRDTTCSDAYT GL+KYR+PYPFGVDPSWRGSR+ELP+
Sbjct: 481 CGLIYNEFFSVPFHIFGGSAYKCRDTTCSDAYTVGLIKYRDPYPFGVDPSWRGSRTELPY 540

Query: 541 LNSLKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLII 600
           LNSLKMKMSILLG+ QMNLG+ILS+F+ARFFGSSLDIRYQF+PQ+IFLNSLFGYLSLLII
Sbjct: 541 LNSLKMKMSILLGIAQMNLGLILSFFNARFFGSSLDIRYQFIPQMIFLNSLFGYLSLLII 600

Query: 601 IKWCTGSQADLYHVMIYMFLSPTDDLGENELFWGQRPLQILLLLLATVAVPWMLFPKPFI 660
           IKWCTGSQADLYHVMIYMFLSPT++LGENELFWGQRPLQI+LLLLA +AVPWMLFPKPF 
Sbjct: 601 IKWCTGSQADLYHVMIYMFLSPTEELGENELFWGQRPLQIVLLLLAFIAVPWMLFPKPFA 660

Query: 661 LRKLHTERFQGRTYGILGTSEMDLEVEPDSAR---QHHEDFNFSEIFVHQMIHSIEFVLG 717
           LRK+H ERFQGRTYG+L +SE+DL+VEPDSAR    H E+FNFSEIFVHQ+IHSIEFVLG
Sbjct: 661 LRKIHMERFQGRTYGVLVSSEVDLDVEPDSARGGGHHEEEFNFSEIFVHQLIHSIEFVLG 720

Query: 718 AVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMM 777
           +VSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGY+N++IRL+G+AVFAFATAFILLMM
Sbjct: 721 SVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYENILIRLIGVAVFAFATAFILLMM 780

Query: 778 ETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFALI 814
           ETLSAFLHALRLHWVEF  KF++GDGYKF+PFSFALI
Sbjct: 781 ETLSAFLHALRLHWVEFMGKFFNGDGYKFKPFSFALI 817

Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase. Required during cell expansion.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9SJT7\|VHAA2_ARATH Vacuolar proton ATPase a2 OS=Arabidopsis thaliana GN=VHA-a2 PE=1 SV=1	Back alignment and function description

>sp\|Q8W4S4\|VHAA3_ARATH Vacuolar proton ATPase a3 OS=Arabidopsis thaliana GN=VHA-a3 PE=1 SV=1	Back alignment and function description

>sp\|Q54E04\|VATM_DICDI Vacuolar proton translocating ATPase 100 kDa subunit OS=Dictyostelium discoideum GN=vatM PE=1 SV=2	Back alignment and function description

>sp\|Q9Z1G4\|VPP1_MOUSE V-type proton ATPase 116 kDa subunit a isoform 1 OS=Mus musculus GN=Atp6v0a1 PE=1 SV=3	Back alignment and function description

>sp\|Q8AVM5\|VPP1_XENLA V-type proton ATPase 116 kDa subunit a isoform 1 OS=Xenopus laevis GN=atp6v0a1 PE=2 SV=1	Back alignment and function description

>sp\|Q9HBG4\|VPP4_HUMAN V-type proton ATPase 116 kDa subunit a isoform 4 OS=Homo sapiens GN=ATP6V0A4 PE=1 SV=2	Back alignment and function description

>sp\|A1A5G6\|VPP1_XENTR V-type proton ATPase 116 kDa subunit a isoform 1 OS=Xenopus tropicalis GN=atp6v0a1 PE=2 SV=1	Back alignment and function description

>sp\|P25286\|VPP1_RAT V-type proton ATPase 116 kDa subunit a isoform 1 OS=Rattus norvegicus GN=Atp6v0a1 PE=2 SV=1	Back alignment and function description

>sp\|Q5R422\|VPP1_PONAB V-type proton ATPase 116 kDa subunit a isoform 1 OS=Pongo abelii GN=ATP6V0A1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		819
225435195		818	PREDICTED: vacuolar proton translocating	0.996	0.997	0.892	0.0
449463683		819	PREDICTED: vacuolar proton ATPase a1-lik	1.0	1.0	0.862	0.0
255582973		822	vacuolar proton atpase, putative [Ricinu	1.0	0.996	0.881	0.0
356558433		822	PREDICTED: V-type proton ATPase 116 kDa	1.0	0.996	0.843	0.0
356547204		853	PREDICTED: V-type proton ATPase 116 kDa	1.0	0.960	0.842	0.0
356539094		818	PREDICTED: V-type proton ATPase 116 kDa	0.998	1.0	0.840	0.0
356542569		818	PREDICTED: V-type proton ATPase 116 kDa	0.998	1.0	0.841	0.0
357453737		824	V-type proton ATPase 116 kDa subunit a i	0.998	0.992	0.838	0.0
297822557		822	VHA-A1 [Arabidopsis lyrata subsp. lyrata	1.0	0.996	0.826	0.0
30683925		817	V-type H+-transporting ATPase subunit I	0.993	0.996	0.823	0.0

>gi\|225435195\|ref\|XP_002282009.1\| PREDICTED: vacuolar proton translocating ATPase 100 kDa subunit [Vitis vinifera] gi\|297746196\|emb\|CBI16252.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1515 bits (3923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 728/816 (89%), Positives = 773/816 (94%)

Query: 4   FIDDLPPMDLMRSEKMMFVQLIIPVESAQRAVSYLGELGLLQFRDLNSDKSPFQRTFVNQ 63
           FID+LPPMDLMRSEKM FVQLIIPVESA RAVSYLGELGLLQFRDLN+DKSPFQRTFVNQ
Sbjct: 3   FIDNLPPMDLMRSEKMTFVQLIIPVESAHRAVSYLGELGLLQFRDLNADKSPFQRTFVNQ 62

Query: 64  VKRCGEMSRKLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNSNSEK 123
           VKRCGEM+RKLRFFK+Q++KAGL SS  P   PD++LEELEIQL+EHEHEL+E NSNSEK
Sbjct: 63  VKRCGEMARKLRFFKDQVSKAGLISSARPDLQPDIELEELEIQLSEHEHELLEMNSNSEK 122

Query: 124 LRQTYNELLEFKMVLQKAGGFLVSSNGHAVAEETELSENVYSMNDYADTASLLEQDIRAG 183
           LRQTYNELLEFKMVLQKA GFLVSS  HAV EE EL E  YS + Y +TASLLEQ++  G
Sbjct: 123 LRQTYNELLEFKMVLQKASGFLVSSKSHAVVEERELDETAYSKDRYVETASLLEQEMGPG 182

Query: 184 PSNQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFV 243
           PSNQSGLRFISGIICKSK LRFERMLFRATRGNMLFNQA ADE IMDPV+ EM+EKT+FV
Sbjct: 183 PSNQSGLRFISGIICKSKALRFERMLFRATRGNMLFNQATADEHIMDPVSTEMIEKTVFV 242

Query: 244 VFFSGEQARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNK 303
           VFFSGEQA+TKILKICEAFGANCYPV ED+TKQRQI REVL+RLSELEATLDAGIRHRNK
Sbjct: 243 VFFSGEQAKTKILKICEAFGANCYPVPEDMTKQRQISREVLARLSELEATLDAGIRHRNK 302

Query: 304 ALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRAT 363
           AL+SIGFHL KWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQE LQRAT
Sbjct: 303 ALSSIGFHLMKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEALQRAT 362

Query: 364 FDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPF 423
           FDSNSQVG IFHVMD++ESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVY VITFPF
Sbjct: 363 FDSNSQVGIIFHVMDAVESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYTVITFPF 422

Query: 424 LFAVMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGL 483
           LFAVMFGDWGHGICLLLGALVLIARE KL +QKLGSFMEMLFGGRYVLLLMS+FSIYCGL
Sbjct: 423 LFAVMFGDWGHGICLLLGALVLIARESKLSSQKLGSFMEMLFGGRYVLLLMSIFSIYCGL 482

Query: 484 IYNEFFSVPYHIFGGSAYRCRDTTCSDAYTAGLVKYREPYPFGVDPSWRGSRSELPFLNS 543
           IYNEFFSVPYHIFGGSAY+CRD TCS++ T GL+KY++ YPFGVDPSWRGSRSELPFLNS
Sbjct: 483 IYNEFFSVPYHIFGGSAYKCRDATCSNSNTVGLIKYQDTYPFGVDPSWRGSRSELPFLNS 542

Query: 544 LKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKW 603
           LKMKMSILLGVTQMNLGI+LSYF+ARFFGSSLDIRYQFVPQ+IFLNSLFGYLSLLIIIKW
Sbjct: 543 LKMKMSILLGVTQMNLGIVLSYFNARFFGSSLDIRYQFVPQVIFLNSLFGYLSLLIIIKW 602

Query: 604 CTGSQADLYHVMIYMFLSPTDDLGENELFWGQRPLQILLLLLATVAVPWMLFPKPFILRK 663
           CTGSQADLYHVMIYMFLSPTD+LGEN+LFWGQRPLQI+LLLLA +AVPWMLFPKPFIL+K
Sbjct: 603 CTGSQADLYHVMIYMFLSPTDNLGENQLFWGQRPLQIILLLLALIAVPWMLFPKPFILKK 662

Query: 664 LHTERFQGRTYGILGTSEMDLEVEPDSARQHHEDFNFSEIFVHQMIHSIEFVLGAVSNTA 723
           LH+ERFQGR YGILGTSEMDLEVEPDSARQHHE+FNFSEIFVHQMIHSIEFVLGAVSNTA
Sbjct: 663 LHSERFQGRAYGILGTSEMDLEVEPDSARQHHEEFNFSEIFVHQMIHSIEFVLGAVSNTA 722

Query: 724 SYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAF 783
           SYLRLWALSLAHSELSTVFYEKVLLLAWGY+N VIR+VGLAVFAFATAFILLMMETLSAF
Sbjct: 723 SYLRLWALSLAHSELSTVFYEKVLLLAWGYNNFVIRMVGLAVFAFATAFILLMMETLSAF 782

Query: 784 LHALRLHWVEFQNKFYHGDGYKFRPFSFALINDEED 819
           LHALRLHWVEFQNKFYHGDGYKFRPFSFA + D+ED
Sbjct: 783 LHALRLHWVEFQNKFYHGDGYKFRPFSFASLIDDED 818

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449463683\|ref\|XP_004149561.1\| PREDICTED: vacuolar proton ATPase a1-like [Cucumis sativus] gi\|449522438\|ref\|XP_004168233.1\| PREDICTED: vacuolar proton ATPase a1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255582973\|ref\|XP_002532256.1\| vacuolar proton atpase, putative [Ricinus communis] gi\|223528044\|gb\|EEF30122.1\| vacuolar proton atpase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356558433\|ref\|XP_003547511.1\| PREDICTED: V-type proton ATPase 116 kDa subunit a isoform 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356547204\|ref\|XP_003542006.1\| PREDICTED: V-type proton ATPase 116 kDa subunit a isoform 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356539094\|ref\|XP_003538035.1\| PREDICTED: V-type proton ATPase 116 kDa subunit a isoform 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356542569\|ref\|XP_003539739.1\| PREDICTED: V-type proton ATPase 116 kDa subunit a isoform 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|357453737\|ref\|XP_003597149.1\| V-type proton ATPase 116 kDa subunit a isoform [Medicago truncatula] gi\|355486197\|gb\|AES67400.1\| V-type proton ATPase 116 kDa subunit a isoform [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297822557\|ref\|XP_002879161.1\| VHA-A1 [Arabidopsis lyrata subsp. lyrata] gi\|297325000\|gb\|EFH55420.1\| VHA-A1 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|30683925|ref|NP_850122.1| V-type H+-transporting ATPase subunit I [Arabidopsis thaliana] gi|75158780|sp|Q8RWZ7.1|VHAA1_ARATH RecName: Full=Vacuolar proton ATPase a1; AltName: Full=V-type proton ATPase 95 kDa subunit a isoform 1; Short=V-ATPase 95 kDa isoform a1; AltName: Full=Vacuolar proton pump subunit a1; AltName: Full=Vacuolar proton translocating ATPase 95 kDa subunit a isoform 1 gi|20259419|gb|AAM14030.1| putative vacuolar proton-ATPase subunit [Arabidopsis thaliana] gi|330253040|gb|AEC08134.1| V-type H+-transporting ATPase subunit I [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		819
TAIR\|locus:2056598		817	VHA-A1 "vacuolar proton ATPase	0.993	0.996	0.818	0.0
TAIR\|locus:2050085		821	VHA-A2 "vacuolar proton ATPase	0.987	0.985	0.632	9.7e-286
TAIR\|locus:2120217		821	VHA-A3 "vacuolar proton ATPase	0.987	0.985	0.636	2.9e-284
UNIPROTKB\|F5H569		837	ATP6V0A1 "V-type proton ATPase	0.703	0.688	0.416	2.6e-169
UNIPROTKB\|Q93050		837	ATP6V0A1 "V-type proton ATPase	0.703	0.688	0.416	2.6e-169
UNIPROTKB\|F1MJV0		838	LOC785923 "Uncharacterized pro	0.703	0.687	0.417	2.6e-169
UNIPROTKB\|Q29466		838	ATP6V0A1 "V-type proton ATPase	0.703	0.687	0.415	5.5e-169
DICTYBASE\|DDB_G0291858		817	vatM "vacuolar proton ATPase 1	0.956	0.958	0.433	7.4e-169
RGD\|68405		838	Atp6v0a1 "ATPase, H+ transport	0.703	0.687	0.417	6.3e-168
MGI\|MGI:103286		839	Atp6v0a1 "ATPase, H+ transport	0.710	0.693	0.418	1.9e-166

TAIR\|locus:2056598 VHA-A1 "vacuolar proton ATPase A1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3563 (1259.3 bits), Expect = 0., P = 0.
 Identities = 669/817 (81%), Positives = 744/817 (91%)

Query:     1 MDRFIDDLPPMDLMRSEKMMFVQLIIPVESAQRAVSYLGELGLLQFRDLNSDKSPFQRTF 60
             M+ F+D LP MDLMRSEKM  VQLIIPVESA R+++YLGELGLLQFRDLN+DKSPFQRTF
Sbjct:     1 MEEFLDKLPQMDLMRSEKMTLVQLIIPVESAHRSITYLGELGLLQFRDLNADKSPFQRTF 60

Query:    61 VNQVKRCGEMSRKLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNSN 120
              NQVKRCGEMSRKLRFFK+QI+KAGL+ S      PD+ L +LE QLA+HEHE++E NSN
Sbjct:    61 ANQVKRCGEMSRKLRFFKDQIDKAGLRCSPRLEIEPDIALGDLERQLADHEHEVLEMNSN 120

Query:   121 SEKLRQTYNELLEFKMVLQKAGGFLVSSNGHAVAEETELSENVYSMNDYADTASLLEQDI 180
             SEKLRQTYNELLEFK+VL+KA GFLVSSN HA+ EE EL E+ YS N + +TASLLEQ++
Sbjct:   121 SEKLRQTYNELLEFKIVLEKASGFLVSSNTHAIGEEIELHESTYSNNGFIETASLLEQEM 180

Query:   181 RAGPSNQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKT 240
               G SNQSGLRFISGII K K+L+FERMLFRATRGNMLFNQ  +DEEIMDP T+EMVEK 
Sbjct:   181 NPGHSNQSGLRFISGIINKDKLLKFERMLFRATRGNMLFNQTTSDEEIMDPSTSEMVEKV 240

Query:   241 IFVVFFSGEQARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRH 300
             +FVVFFSGEQARTKILKICEAFGANCYPV ED TKQRQ+ REVLSRLS+LEATLDAG RH
Sbjct:   241 VFVVFFSGEQARTKILKICEAFGANCYPVPEDTTKQRQLTREVLSRLSDLEATLDAGTRH 300

Query:   301 RNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQ 360
             RN AL S+G+ LT W+  VRREKAVYDTLNMLNFDVTKKCLVGEGWCP FAK QI EVLQ
Sbjct:   301 RNNALNSVGYSLTNWITTVRREKAVYDTLNMLNFDVTKKCLVGEGWCPTFAKTQIHEVLQ 360

Query:   361 RATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVIT 420
             RATFDS+SQVG IFHVM ++ESPPTYFRTN+ TNAFQEI+DAYGVARYQEANPAVY+V+T
Sbjct:   361 RATFDSSSQVGVIFHVMQAVESPPTYFRTNKLTNAFQEIIDAYGVARYQEANPAVYSVVT 420

Query:   421 FPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIY 480
             +PFLFAVMFGDWGHG+CLLLGAL L+ARERKL  QKLGSFMEMLFGGRYV+LLM+LFSIY
Sbjct:   421 YPFLFAVMFGDWGHGLCLLLGALYLLARERKLSTQKLGSFMEMLFGGRYVILLMALFSIY 480

Query:   481 CGLIYNEFFSVPYHIFGGSAYRCRDTTCSDAYTAGLVKYREPYPFGVDPSWRGSRSELPF 540
             CGLIYNEFFSVP+HIFGGSAY+CRDTTCSDAYT GL+KYR+PYPFGVDPSWRGSR+ELP+
Sbjct:   481 CGLIYNEFFSVPFHIFGGSAYKCRDTTCSDAYTVGLIKYRDPYPFGVDPSWRGSRTELPY 540

Query:   541 LNSLKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLII 600
             LNSLKMKMSILLG+ QMNLG+ILS+F+ARFFGSSLDIRYQF+PQ+IFLNSLFGYLSLLII
Sbjct:   541 LNSLKMKMSILLGIAQMNLGLILSFFNARFFGSSLDIRYQFIPQMIFLNSLFGYLSLLII 600

Query:   601 IKWCTGSQADLYHVMIYMFLSPTDDLGENELFWGQRPLQIXXXXXATVAVPWMLFPKPFI 660
             IKWCTGSQADLYHVMIYMFLSPT++LGENELFWGQRPLQI     A +AVPWMLFPKPF 
Sbjct:   601 IKWCTGSQADLYHVMIYMFLSPTEELGENELFWGQRPLQIVLLLLAFIAVPWMLFPKPFA 660

Query:   661 LRKLHTERFQGRTYGILGTSEMDLEVEPDSAR---QHHEDFNFSEIFVHQMIHSIEFVLG 717
             LRK+H ERFQGRTYG+L +SE+DL+VEPDSAR    H E+FNFSEIFVHQ+IHSIEFVLG
Sbjct:   661 LRKIHMERFQGRTYGVLVSSEVDLDVEPDSARGGGHHEEEFNFSEIFVHQLIHSIEFVLG 720

Query:   718 AVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMM 777
             +VSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGY+N++IRL+G+AVFAFATAFILLMM
Sbjct:   721 SVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYENILIRLIGVAVFAFATAFILLMM 780

Query:   778 ETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFALI 814
             ETLSAFLHALRLHWVEF  KF++GDGYKF+PFSFALI
Sbjct:   781 ETLSAFLHALRLHWVEFMGKFFNGDGYKFKPFSFALI 817

GO:0005737 "cytoplasm" evidence=ISM

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISS

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0012510 "trans-Golgi network transport vesicle membrane" evidence=IDA

GO:0070070 "proton-transporting V-type ATPase complex assembly" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR\|locus:2050085 VHA-A2 "vacuolar proton ATPase A2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2120217 VHA-A3 "vacuolar proton ATPase A3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F5H569 ATP6V0A1 "V-type proton ATPase 116 kDa subunit a isoform 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q93050 ATP6V0A1 "V-type proton ATPase 116 kDa subunit a isoform 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MJV0 LOC785923 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q29466 ATP6V0A1 "V-type proton ATPase 116 kDa subunit a isoform 1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0291858 vatM "vacuolar proton ATPase 100-kDa subunit" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

RGD\|68405 Atp6v0a1 "ATPase, H+ transporting, lysosomal V0 subunit A1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:103286 Atp6v0a1 "ATPase, H+ transporting, lysosomal V0 subunit A1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54E04	VATM_DICDI	No assigned EC number	0.4384	0.9487	0.9533	yes	no
Q29466	VPP1_BOVIN	No assigned EC number	0.4204	0.9609	0.9391	yes	no
P25286	VPP1_RAT	No assigned EC number	0.4265	0.9584	0.9367	yes	no
Q9I8D0	VPP1_CHICK	No assigned EC number	0.4168	0.9548	0.9331	yes	no
A1A5G6	VPP1_XENTR	No assigned EC number	0.4210	0.9523	0.9318	yes	no
O13742	VPH1_SCHPO	No assigned EC number	0.3863	0.9633	0.9494	yes	no
P30628	VPP1_CAEEL	No assigned EC number	0.3903	0.9877	0.8939	yes	no
P32563	VPH1_YEAST	No assigned EC number	0.3514	0.9352	0.9119	yes	no
Q8RWZ7	VHAA1_ARATH	No assigned EC number	0.8237	0.9938	0.9963	yes	no
Q9Z1G4	VPP1_MOUSE	No assigned EC number	0.4307	0.9670	0.9439	yes	no
Q9HBG4	VPP4_HUMAN	No assigned EC number	0.4270	0.9645	0.9404	yes	no
Q5R422	VPP1_PONAB	No assigned EC number	0.4198	0.9609	0.9402	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		819
pfam01496		707	pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni	0.0
COG1269		660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	8e-56
COG1269		660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	1e-26
PRK05771		646	PRK05771, PRK05771, V-type ATP synthase subunit I;	6e-23
PRK05771		646	PRK05771, PRK05771, V-type ATP synthase subunit I;	1e-19

>gnl\|CDD\|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family	Back alignment and domain information

 Score =  622 bits (1606), Expect = 0.0
 Identities = 308/786 (39%), Positives = 426/786 (54%), Gaps = 89/786 (11%)

Query: 35  VSYLGELGLLQFRDLNSDKSPFQRTFVNQVKRCGEMSRKLRFFKEQINKAGLQSS---VH 91
           V  LGELGL+Q RDLN D S FQR FVN+V+RC E+ RKLR  + +I K G+        
Sbjct: 1   VDALGELGLVQIRDLNEDVSAFQRKFVNEVRRCDEVERKLRKLESKIKKLGIPLKDTGGK 60

Query: 92  PVSGPDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNELLEFKMVLQKAGGFLVSSNGH 151
           P   P  +  +LE ++ + E E+ E   N E L +  NEL E+  VL +   FL  +   
Sbjct: 61  PDVPPSKEFLDLEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFLDEN--- 117

Query: 152 AVAEETELSENVYSMNDYADTASLLEQDIRAGPSNQSGLRFISGIICKSKVLRFERMLFR 211
              EE     N+     Y   A  L+            L F++G+I + K+  FER L+R
Sbjct: 118 --LEELSELSNLDIDFKYLRGAEGLK------------LGFVAGVINREKLEAFERELWR 163

Query: 212 ATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGANCYPVSE 271
           A RG     QA  +E + DP       KT+F++FF G++   K+ KI ++FG   Y V E
Sbjct: 164 ACRG--YIRQAEIEEPLEDPK------KTVFIIFFVGKEDLDKVKKILDSFGFELYDVPE 215

Query: 272 DLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNM 331
              ++ ++I +V  R+ EL+  L+    H  K L  I   L  W   V +EKAVY+TLN+
Sbjct: 216 TEGERSELISKVNKRIEELQRVLEQTESHLEKVLVKIADELLAWDEQVSKEKAVYETLNL 275

Query: 332 LNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSMESPPTYFRTNR 391
            N+D   K L+ EGW P     +++  L+ AT  S S V +I + +++ E PPTY + N+
Sbjct: 276 FNYDT--KTLIAEGWVPAKDLEKLKAALENATEGSGS-VPSIENDIETNEEPPTYLKNNK 332

Query: 392 FTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFAVMFGDWGHGICLLLGALVLIARERK 451
           FT  FQ IVDAYG+ +Y+E +P  + +ITFPF F +MFGD G+G+ + L AL+L+  E+K
Sbjct: 333 FTAPFQMIVDAYGIPKYREIDPTPFTIITFPFFFGMMFGDAGYGLLMFLIALLLVLLEKK 392

Query: 452 LGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGSAYRCRDTTCSDA 511
           LG +K        F GRY+LLLM +FSIY G IYN+ F    +IFG            + 
Sbjct: 393 LGKKK--------FKGRYILLLMGVFSIYTGFIYNDCFGKSLNIFGSGWLWPVMIKSGET 444

Query: 512 YTAGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNLGIILSYFDARFF 571
            T  L  +  PYPFG+DP W G  ++L FLNS KMK+SI+LGV  M  G+ L +F+   F
Sbjct: 445 LT--LAPHEGPYPFGIDPEWNGVENKLLFLNSYKMKLSIILGVIHMTFGLFLGFFNHVKF 502

Query: 572 GSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLYHV------MIYMFLSPTDD 625
            S +DI+  F+PQL +L  +FGYL +LII KW                 +I MFL P   
Sbjct: 503 KSKIDIKDAFIPQLSWLIIIFGYLVILIIYKWLVDWAKTSKPAPSLLIGLINMFLFPG-- 560

Query: 626 LGENELFWGQRPLQILLLLLATVAVPWMLFPKPFILRKLHTERFQGRTYGILGTSEMDLE 685
                       +Q+ L++LA V VP +L  KP  L +   +                  
Sbjct: 561 ------------VQVFLVVLALVCVPILLLLKPLFLMREGKKGE---------------- 592

Query: 686 VEPDSARQHHEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEK 745
                       F F E+ +HQ+IH+IEF LG VS+TASYLRLWALSLAH++LS V    
Sbjct: 593 ------------FEFGEVMIHQVIHTIEFCLGCVSHTASYLRLWALSLAHAQLSAVLNTM 640

Query: 746 VLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYK 805
           V+L+ +    ++  +V   +       I L+ME LSAFLHALRLH+VEF +KFY G G K
Sbjct: 641 VILIGFESIGVIALVVVFIIVFVLGHAINLIMEGLSAFLHALRLHYVEFFSKFYEGGGRK 700

Query: 806 FRPFSF 811
           F PFSF
Sbjct: 701 FEPFSF 706

This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) subunits, as well as V-type ATP synthase subunit i. The V-type ATPases family are proton pumps that acidify intracellular compartments in eukaryotic cells for example yeast central vacuoles, clathrin-coated and synaptic vesicles. They have important roles in membrane trafficking processes. The 116kDa subunit (subunit a) in the V-type ATPase is part of the V0 functional domain responsible for proton transport. The a subunit is a transmembrane glycoprotein with multiple putative transmembrane helices it has a hydrophilic amino terminal and a hydrophobic carboxy terminal. It has roles in proton transport and assembly of the V-type ATPase complex. This subunit is encoded by two homologous gene in yeast VPH1 and STV1. Length = 707

>gnl\|CDD\|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	Back alignment and domain information

>gnl\|CDD\|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		819
KOG2189		829	consensus Vacuolar H+-ATPase V0 sector, subunit a	100.0
PF01496		759	V_ATPase_I: V-type ATPase 116kDa subunit family ;	100.0
PRK05771		646	V-type ATP synthase subunit I; Validated	100.0
COG1269		660	NtpI Archaeal/vacuolar-type H+-ATPase subunit I [E	100.0
PF14257		262	DUF4349: Domain of unknown function (DUF4349)	90.16
PRK05771		646	V-type ATP synthase subunit I; Validated	84.35

>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]	Back alignment and domain information

Probab=100.00  E-value=5e-207  Score=1722.03  Aligned_cols=795  Identities=51%  Similarity=0.877  Sum_probs=709.3

Q ss_pred             CCccccccccceEEEEcccccHHHHHHHhcccCceeeeecCCCCCchhhhhhHhHhhhHHHHHHHHHHHHHHHhcCCCCC
Q 003454           10 PMDLMRSEKMMFVQLIIPVESAQRAVSYLGELGLLQFRDLNSDKSPFQRTFVNQVKRCGEMSRKLRFFKEQINKAGLQSS   89 (819)
Q Consensus        10 ~mslfRSe~M~~~~Li~p~e~a~~~v~~Lgelg~Vqf~Dln~~~~~fqR~f~~~i~RceE~erkL~fl~~~i~k~~i~~~   89 (819)
                      ++|+||||+|++|||++|+|+|++||++|||+|+|||+|||+++++|||+|++|||||||||||+||+++|+.|++++..
T Consensus         1 ~~s~fRSE~M~L~Ql~l~~eaAy~~vaeLGelGlvqFrDLN~~v~afQR~fv~evrRcdemeRklrfl~~ei~k~~i~~~   80 (829)
T KOG2189|consen    1 MGSLFRSEEMCLVQLFLQSEAAYQCVAELGELGLVQFRDLNPDVSAFQRKFVNEVRRCDEMERKLRFLESEIKKAGIPLP   80 (829)
T ss_pred             CccccccccceeeEEEecHHHHHHHHHHhhccCeeEeeeCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999988754


Q ss_pred             ---CCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcchhhhhhhhhhccc
Q 003454           90 ---VHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNELLEFKMVLQKAGGFLVSSNGHAVAEETELSENVYSM  166 (819)
Q Consensus        90 ---~~~~~~~~~~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~E~~~vL~~~~~~l~~~~~~~~~~~~~l~~~~~~~  166 (819)
                         ..+++|.+++++++|++++++|+|++|+++|.++|+++++++.|+++||+++++|++.......+.+..        
T Consensus        81 ~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E~~~vl~~t~~Ff~~~~~~~~~~~~~--------  152 (829)
T KOG2189|consen   81 DLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELLELKYVLEKTDEFFSTSVQESFEDDET--------  152 (829)
T ss_pred             CccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhcchhh--------
Confidence               456678899999999999999999999999999999999999999999999999998743211100000        


Q ss_pred             CcccccccchhhhhccCCCCCCcceEEEeEEecccHHHHHHHHHHhhCCcEEeeecCCCccccCcccccccceEEEEEEE
Q 003454          167 NDYADTASLLEQDIRAGPSNQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFF  246 (819)
Q Consensus       167 ~~~~~~~ll~~~e~~~~~~~~~~~~~i~G~I~~~~~~~f~~~l~R~~rgn~~~~~~~i~~~~~~~~~~~~~~k~vfvv~~  246 (819)
                      ......++.. .+  .++....+++|++|+|++++...|||+|||+||||+|+++.++|+++.||.+|+..+|+||+|++
T Consensus       153 ~~~~~~~~~~-~~--~~~~~~~~l~FvaGvI~r~k~~~fER~LWRa~Rgn~f~r~~~ie~~l~dp~Tge~~~K~vFivF~  229 (829)
T KOG2189|consen  153 ADLGEGPLES-AE--KGPFDGLKLGFVAGVINREKVFAFERMLWRACRGNLFIRQSDIEEPLEDPKTGEPVEKNVFIVFF  229 (829)
T ss_pred             hhhcccccch-hc--cCCCCcccceeEEeeechhHHHHHHHHHHHHhccceEEEeecccccccCCccCCcceeEEEEEEe
Confidence            0000111111 11  11223347999999999999999999999999999999999999999999999999999999999


Q ss_pred             eChhhHHHHHHHHhhcCceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003454          247 SGEQARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVY  326 (819)
Q Consensus       247 ~~~~~~~kv~kI~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~~~kek~iy  326 (819)
                      +|++++.||+|||++|+++.||||+++.++++++.+++.||+|++.++.++++++.++|..+++++..|...++|+|+||
T Consensus       230 ~Geql~~kIkKIcd~f~a~~yp~p~~~~er~~~~~~v~~ri~DL~~Vl~~t~~~r~~vL~~~~~~l~~W~~~v~K~KaIy  309 (829)
T KOG2189|consen  230 QGEQLKQKIKKICDGFGATLYPCPESPEERKEMLLEVNTRISDLQTVLDQTEDHRSRVLQAAAKNLPSWLIKVRKEKAIY  309 (829)
T ss_pred             ecHHHHHHHHHHHhccCcEeecCCCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccccccCceEEEEEeeecccHHHHHHHHHhhhccCCCceeeEeeecCCCCCCCccccccchhhHHHHHHHhhcCC
Q 003454          327 DTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVA  406 (819)
Q Consensus       327 ~~ln~~~~~~t~~~~~~~gWvP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~pPt~l~nn~~~~pFe~iv~~Yg~P  406 (819)
                      |+||+|++|+|++|+++|||||..|++.++++|++.+..+|++|+.+++.+++++.||||+||||||++||.|||+||++
T Consensus       310 htLN~fn~Dvt~KCLIaE~W~P~~dl~~vq~aL~~~~~~sgS~v~~i~nv~~T~e~PPTy~RTNKFT~~FQ~IvDaYGVa  389 (829)
T KOG2189|consen  310 HTLNMFNFDVTQKCLIAEGWCPVADLPDLQRALERGSEESGSQVPSILNVMETNEMPPTYFRTNKFTAGFQNIVDAYGVA  389 (829)
T ss_pred             HHHhccCccccCceEEEEeecchhhHHHHHHHHHHhhhhcCCcchhhHhheecCCCCCcchhcchhhHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhccccch-hhHHHhhhhHHHHHHHHhHHHHHHHHHh
Q 003454          407 RYQEANPAVYAVITFPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQKL-GSFMEMLFGGRYVLLLMSLFSIYCGLIY  485 (819)
Q Consensus       407 ~Y~EidPt~~~~itFp~~FG~MfGD~G~Glll~l~~~~l~~~~~~~~~~~~-~~~~~~~~~~ryil~~~gi~si~~G~ly  485 (819)
                      +|+|+||+|+++|||||+||+||||+|||++|+++|+|+++++||+..++. +|+++|+|+||||+++||+||||+|+||
T Consensus       390 ~YrEvNPa~yTiITFPFLFAVMFGD~GHG~imlL~al~~Vl~Ekkl~~~k~~~EI~~mfF~GRYIIlLMGlFSiYTGliY  469 (829)
T KOG2189|consen  390 SYREVNPAPYTIITFPFLFAVMFGDLGHGLIMLLAALWMVLNEKKLASQKIGDEIFNMFFGGRYIILLMGLFSIYTGLIY  469 (829)
T ss_pred             cccccCCCceeEeehHHHHHHHhcccchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHhhhh
Confidence            999999999999999999999999999999999999999999999987774 6999999999999999999999999999


Q ss_pred             cccccCcccccCCccccccCCCC----CCccc---ccccccCCCCCCcCCCCCCCCCCCccccchhHHHHHHHHHHHHHH
Q 003454          486 NEFFSVPYHIFGGSAYRCRDTTC----SDAYT---AGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMN  558 (819)
Q Consensus       486 g~fFg~~~~~fg~s~~~~~~~~~----~~~~~---~~~~~~~~~y~fgidp~w~~~~~~l~f~ns~~m~~SiiiGv~~m~  558 (819)
                      ||||++++++|| |+|.++++..    ++...   .+.....+|||||+||+|+.+.|+++|.||+|||+|||+|++||+
T Consensus       470 ND~FSks~niFg-S~W~~~~~~~~~~~~e~~~~p~~~~~~~~gpYPfGvDPiW~~a~N~L~FLNS~KMKmSIIlGi~hM~  548 (829)
T KOG2189|consen  470 NDFFSKSMNIFG-SSWSNPYNVTAVLCSEALLTPEIGGAKFGGPYPFGVDPIWHLADNKLSFLNSMKMKMSIILGIIHMT  548 (829)
T ss_pred             hhhccccccccc-CcccCccccchhccccccccCCCCcccccCCCCCcCChhhhcccccchhhhhhHHHHHHHHHHHHHH
Confidence            999999999999 9998775432    11111   122223569999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHh-----cC-CCchHHHHHHHHhcCCCCCCCccccc
Q 003454          559 LGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWC-----TG-SQADLYHVMIYMFLSPTDDLGENELF  632 (819)
Q Consensus       559 ~G~~l~~~n~~~~~~~~~~~~~~ip~~~fl~~~fgyl~~lii~kw~-----~~-~~p~l~~~~i~m~l~~~~~~~~~~l~  632 (819)
                      +|+++++.|++++|++.|++++|+||++||.|+|||||++|+|||+     ++ +|||+++++||||++|+...+ ..+|
T Consensus       549 fGv~lS~~N~~~Fk~~~~I~~~FIPq~iFl~~iFgYL~~~IiyKW~~~~~~~~~~aPslLi~lInMFl~~~~~~~-~~ly  627 (829)
T KOG2189|consen  549 FGVILSVFNHIYFKSKLDIILVFIPQLIFLLSLFGYLVFLIIYKWLVFWAKTSNCAPSLLIMLINMFLFPGTDAG-FQLY  627 (829)
T ss_pred             HHHHHHHHHHHHhccchheeeeccHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCchHHHHHHHHHhCCCCCCc-cccC
Confidence            9999999999999999999999999999999999999999999999     44 599999999999999986432 2899


Q ss_pred             cCchHHHHHHHHHHHHhhhhhccchhhHHhhhhhcc----ccCccccccCCCccccC----CCCC---ccccCCCCCchh
Q 003454          633 WGQRPLQILLLLLATVAVPWMLFPKPFILRKLHTER----FQGRTYGILGTSEMDLE----VEPD---SARQHHEDFNFS  701 (819)
Q Consensus       633 ~g~~~~~~~ll~~~~~~v~~ml~~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~  701 (819)
                      |||..+|.+++++|++||||||++||++++++|+++    ..+..++.....++...    +..+   .++++++++++|
T Consensus       628 p~Q~~vQ~~ll~~Al~cVPwmLl~KPl~l~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~fs  707 (829)
T KOG2189|consen  628 PGQKQVQLILLVLALVCVPWMLLGKPLYLRRRHKNRLRERHQGQSAGRLDSTDGSVHGPTSDAEDGGGVGDGEEEEFEFS  707 (829)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhcchHHHHHHhhhccccccccchhcccccccccccCCccccccCCCCCCCCcCccchh
Confidence            999999999999999999999999999999888764    22222332211111110    0111   112455678999


Q ss_pred             HHHHHHHHHHhHhhhhhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCc---hHHHHHHHHHHHHHHHHHHHHHH
Q 003454          702 EIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDN---LVIRLVGLAVFAFATAFILLMME  778 (819)
Q Consensus       702 e~~i~q~i~tiE~~lg~isnt~SYlRL~AL~LAh~~La~vf~~~~~~~~~~~~~---~~~~~~g~~i~~~~~~~vll~me  778 (819)
                      |+||||+||||||||||+||||||||||||||||||||+|+|+|++.++++.++   .+++++-+.+|+++|++|+++||
T Consensus       708 eI~iHQaIHTIEf~LgcVShTASYLRLWALSLAHAQLSeVLW~Mvl~~g~~~~~~~g~i~~~~if~~f~~lTv~ILv~ME  787 (829)
T KOG2189|consen  708 EIFIHQAIHTIEFVLGCVSHTASYLRLWALSLAHAQLSEVLWTMVLRIGLGLGGYVGVIGLVALFGVFAVLTVAILVLME  787 (829)
T ss_pred             hHHhhhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999998876432   34455566799999999999999


Q ss_pred             HhHHHHhhhhhhhhhhccCccccCCcccccccccccccc
Q 003454          779 TLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFALINDE  817 (819)
Q Consensus       779 ~L~aflH~LRL~~vEFf~KFY~G~G~~F~Pf~~~~~~~~  817 (819)
                      |||||+||||||||||+||||+|.||+|.||+|+.++++
T Consensus       788 GLSAfLHaLRLHWVEFqsKFy~G~Gy~F~PFsF~~~~~~  826 (829)
T KOG2189|consen  788 GLSAFLHALRLHWVEFQSKFYEGTGYKFEPFSFKLILDE  826 (829)
T ss_pred             hHHHHHHHHHHHHHHHhhhhcCCCCcccccceeehhhhh
Confidence            999999999999999999999999999999999988763

>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PRK05771 V-type ATP synthase subunit I; Validated	Back alignment and domain information

>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]	Back alignment and domain information

>PF14257 DUF4349: Domain of unknown function (DUF4349)	Back alignment and domain information

>PRK05771 V-type ATP synthase subunit I; Validated	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		819
2nvj_A		25	Nmr Structures Of Transmembrane Segment From Subuni		5e-04

>pdb|2NVJ|A Chain A, Nmr Structures Of Transmembrane Segment From Subunit A From The Yeast Proton V-Atpase Length = 25

Back alignment and structure

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/25 (76%), Positives = 22/25 (88%)
Query: 713 EFVLGAVSNTASYLRLWALSLAHSE 737
           EF L  VS+TASYLRLWALSLAH++
Sbjct: 1   EFCLNCVSHTASYLRLWALSLAHAQ 25

PyMOL of 2nvj

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		819
3rrk_A		357	V-type ATPase 116 kDa subunit; alpha beta fold, pr	3e-65
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
2nvj_A		26	25MER peptide from vacuolar ATP synthase subunit A	1e-08
2jtw_A		26	Transmembrane helix 7 of yeast vATPase; peptide, m	1e-05

>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber} Length = 357	Back alignment and structure

 Score =  221 bits (563), Expect = 3e-65
 Identities = 51/405 (12%), Positives = 96/405 (23%), Gaps = 62/405 (15%)

Query: 12  DLMRSEKMMFVQLIIPVESAQRAVSYLGELGLLQFRDLNSDKSPFQRTFVNQVKRCGEMS 71
            +   +KM  + +  P   A+  ++ L + G++    L  D+    R    +        
Sbjct: 7   TIDDDDKMEKLIVAGPKRLARELLAELQKAGVVHIDPLRPDELGEYRLSPTEEAELKRWE 66

Query: 72  RKLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNEL 131
             +   ++ +   GL +           LEE E  L                L +    +
Sbjct: 67  AVVSQAEQSLTVVGLATVPSSKPFTG-SLEEAEAVLRPVASRAEVLGKERAALEEEIQTI 125

Query: 132 LEFKMVLQKAGGFLVSSNGHAVAEETELSENVYSMNDYADTASLLEQDIRAGPSNQSGLR 191
             F    +K                                       +  G      L 
Sbjct: 126 ELFGKAAEKL------------------------------------AALAHGLDESPRLG 149

Query: 192 FISGIICK-SKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQ 250
            I  ++ K  ++    + L  A     +    P             +E  +  +      
Sbjct: 150 VIPFLVAKPEELEAVRKALQEALADRFVLEAEP-------------LENQLAALVVVKRS 196

Query: 251 ARTKILKICEAFGANC--YPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSI 308
                       G     +P +       +    +  R       L        +     
Sbjct: 197 ELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRES 256

Query: 309 GFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNS 368
           G  L       + E A Y  +        K      GW P  AK +++E L R       
Sbjct: 257 GEALIALWTRAKDEVARYKAVAD--MAAGKYGAALMGWVPQKAKGKVEEALGRLR----D 310

Query: 369 QVGTIFHVMDS---MESPPTYFRTNRFTNAFQEIVDAYGVARYQE 410
           Q+   F  +D        P       +   F+ +        Y  
Sbjct: 311 QIVYTFEPVDEHHESHQVPVTLENPAWAKPFELLHGFLNTPAYGS 355

PyMOL of 3rrk

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2nvj_A 25MER peptide from vacuolar ATP synthase subunit A, vacuolar isoform; ALFA helix, 3,10 helix, PI helix, hydrolase; NMR {Synthetic} Length = 26	Back alignment and structure

>2jtw_A Transmembrane helix 7 of yeast vATPase; peptide, micelle-bound, membrane protein; NMR {Synthetic} PDB: 2rpw_X Length = 26	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		819
3rrk_A		357	V-type ATPase 116 kDa subunit; alpha beta fold, pr	100.0
2nvj_A		26	25MER peptide from vacuolar ATP synthase subunit A	99.2
2jtw_A		26	Transmembrane helix 7 of yeast vATPase; peptide, m	98.88

>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}	Back alignment and structure

Probab=100.00  E-value=8.9e-46  Score=411.05  Aligned_cols=342  Identities=14%  Similarity=0.112  Sum_probs=247.5

Q ss_pred             ccccccccceEEEEcccccHHHHHHHhcccCceeeeecCCCCCchh--hhhh-HhHhhhHHHHHHHHHHHHHHHhcCCCC
Q 003454           12 DLMRSEKMMFVQLIIPVESAQRAVSYLGELGLLQFRDLNSDKSPFQ--RTFV-NQVKRCGEMSRKLRFFKEQINKAGLQS   88 (819)
Q Consensus        12 slfRSe~M~~~~Li~p~e~a~~~v~~Lgelg~Vqf~Dln~~~~~fq--R~f~-~~i~RceE~erkL~fl~~~i~k~~i~~   88 (819)
                      -|+|+++|++++|++|++.+++++++||++|+|||+|++++.+.|+  +++. +++++|+++.++++++.+++.+...+.
T Consensus         7 ~~~~pekM~kv~l~~~~~~~~~vl~~L~~lg~vhi~d~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~L~~~~~~~   86 (357)
T 3rrk_A            7 TIDDDDKMEKLIVAGPKRLARELLAELQKAGVVHIDPLRPDELGEYRLSPTEEAELKRWEAVVSQAEQSLTVVGLATVPS   86 (357)
T ss_dssp             -------CEEEEEEECGGGHHHHHHHHHHHTCEEEEEECGGGGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             CCCChhheEEEEEEeEHHHHHHHHHHHHHcCcEEEEeccccccccccCCccchHHHhHHHHHHHHHHHHHHHhccccccc
Confidence            4799999999999999999999999999999999999999888888  7776 689999999999999999997654221


Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcchhhhhhhhhhcccCc
Q 003454           89 SVHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNELLEFKMVLQKAGGFLVSSNGHAVAEETELSENVYSMND  168 (819)
Q Consensus        89 ~~~~~~~~~~~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~E~~~vL~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~  168 (819)
                       .   .+...+++++++.+++++++++++.++.++|+++..++.+.+.+++....+-.                 +    
T Consensus        87 -~---~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~~~-----------------~----  141 (357)
T 3rrk_A           87 -S---KPFTGSLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALAH-----------------G----  141 (357)
T ss_dssp             -S---SCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------------T----
T ss_pred             -c---cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhc-----------------c----
Confidence             0   12234599999999999999999999999999999999988777766443310                 1    


Q ss_pred             ccccccchhhhhccCCCCCCcceEEEeEE-ecccHHHHHHHHHHhhCCcEEeeecCCCccccCcccccccceEEEEEEEe
Q 003454          169 YADTASLLEQDIRAGPSNQSGLRFISGII-CKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFS  247 (819)
Q Consensus       169 ~~~~~ll~~~e~~~~~~~~~~~~~i~G~I-~~~~~~~f~~~l~R~~rgn~~~~~~~i~~~~~~~~~~~~~~k~vfvv~~~  247 (819)
                      .+               ....+++++|+| ++++..+|++.|+|++++..+...            ++...+++++|++ 
T Consensus       142 ld---------------~~~~~g~~~g~ip~~~~~~~~~~~l~~~~~~~~~~~~------------~~~~~~~~~vv~~-  193 (357)
T 3rrk_A          142 LD---------------ESPRLGVIPFLVAKPEELEAVRKALQEALADRFVLEA------------EPLENQLAALVVV-  193 (357)
T ss_dssp             TT---------------TCTTEEEEEEEESCHHHHHHHHHHHHHHHTTSCEEEE------------EECSSSEEEEEEE-
T ss_pred             CC---------------ccceeeeeeEEecChhhHHHHHHHHHHhcCCeEEEEe------------ecCCCcEEEEEEE-
Confidence            01               123689999999 799999999999999998433211            1223455666665 


Q ss_pred             ChhhHHHHHHHHhhcCceEeeCCCChh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003454          248 GEQARTKILKICEAFGANCYPVSEDLT--KQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAV  325 (819)
Q Consensus       248 ~~~~~~kv~kI~~~~~~~~~~~p~~~~--~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~~~kek~i  325 (819)
                      ++...+++++||+++||+++++|+..+  .+.+.++++++++++++++++++++++.++.+.....+..|...+.+++++
T Consensus       194 ~~~~~~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~  273 (357)
T 3rrk_A          194 KRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVAR  273 (357)
T ss_dssp             EGGGHHHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EHHHHHHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788999999999999999998777  999999999999999999999999999999999889999999999999999


Q ss_pred             HHHhhcccccccCceEEEEEeeecccHHHHHHHHHhhhccCCCceeeEeeecCCC---CCCCccccccchhhHHHHHHHh
Q 003454          326 YDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSM---ESPPTYFRTNRFTNAFQEIVDA  402 (819)
Q Consensus       326 y~~ln~~~~~~t~~~~~~~gWvP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~---~~pPt~l~nn~~~~pFe~iv~~  402 (819)
                      |+++|++  +.|+++++++||||++++++++++|++ +.   ..+.+.+.+++++   +.|||+++||+|++|||.||+|
T Consensus       274 ~~~~~~~--~~~~~~~~~~gWvp~~~~~~~~~~l~~-~~---~~~~~~~~~~~~~~~~~~pPt~l~n~~~~~~fe~iv~~  347 (357)
T 3rrk_A          274 YKAVADM--AAGKYGAALMGWVPQKAKGKVEEALGR-LR---DQIVYTFEPVDEHHESHQVPVTLENPAWAKPFELLHGF  347 (357)
T ss_dssp             HHHHHHH--HTTCCSEEEEEEECTTTHHHHHHTCCS-SC---EEEEC---------------------------------
T ss_pred             HHHHHhh--cccCcEEEEEEEeeHHHHHHHHHHHHh-cC---CceEEEEecCCccccCCCcCEeccCCchhhHHHHHHHh
Confidence            9999964  579999999999999999999999976 32   3466667777666   5899999999999999999999


Q ss_pred             hcCCCCCccC
Q 003454          403 YGVARYQEAN  412 (819)
Q Consensus       403 Yg~P~Y~Eid  412 (819)
                      ||+|+|+|+|
T Consensus       348 Yg~p~Y~EiD  357 (357)
T 3rrk_A          348 LNTPAYGSHD  357 (357)
T ss_dssp             ----------
T ss_pred             cCCCCCCCCC
Confidence            9999999998

PyMOL of 3rrk

>2jtw_A Transmembrane helix 7 of yeast vATPase; peptide, micelle-bound, membrane protein; NMR {Synthetic} PDB: 2rpw_X	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00