Citrus Sinensis ID: 003460

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------82
Protein Sequence
MDDGVVQRVFEEGGRDYFQQQPSTSSSSPSILQSLPVHASFDHGYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKCRSEAPGACSISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNRKTVGAEALRMGINGPWITKSYLEMVLEKKGVPRLNTPPLFPNTPTTSNQESVIAAPRPIRTNPNLVMKLEDLSQPWTRSPTKSKMEPVLATWHFISSDPSHAGSSVIGSSSFRDTVKLVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKVRLL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHHccEEEEccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccEEEEcccccEEEEEEcccccHHHHHccccEEEEEcccccEEEEHHHHcccccccHHHHHHHHcccccccccccccEEcEEEcccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEccEEEEcccEEEcccEEEEEEccEEHHHHHHHHHHHHHHHHccEEEEEcEEEEEcccHHccccccEEEEcccHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHcccEEcccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccEEEEccccEEEEEEcccccHHHHHcccEEEEEEcccccHHHHHHHHccccccccccccEEEEcccccccccccccccEEEEEEcccccccccccccEEEEEEcccccHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEcccEEEEEEEcccccccEEEcccEEEEEEEHHHHHHHHHccEEEEEEEEcEEEEEccEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccccccccccccccccccEEccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHHccEEEEEccccccccccccccccccHHHHHHHHHHHHccccEEEEEEEEEEEEccccEEEEEccccEEEEEEEEEccHHHHHHccEEEEEEcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccEEEEEEEcccccccccHHHEEEHHHHcccccEEEEcccccccEccEEEEEEcccccccccccccEEEEEccccEEEEEEEccEcccccEEEEccEEEEEEHHHHHHHHHHccEEEEEEEEccEEEEccEEEEEEEcHHcccccEEEEEcccHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccccccccccEEEEcccccEEcccccccHHHccccccccccccccccEEEEEEEEccccccccccEEccccccccEEEEEcccccccHHHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHccEEEEEccccccHHHHHcccccccccccHHHHHHHHHHHHccccEEEEEEEcEEccccccEEEEEcccccEEEEEHHHHHHHHHHHHccEEEEEcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccEEEEEEEccccccEHHHHHHHHHHHHccccHHHHHHHHccccccccccccEEEEEcccccccccccccccEEEEEccccEEEEEEEEEcccccEEEEcEEEEEEEHHHHHHHHHHccEEEEEEEEcEEEEEcccEEEc
Coil and Loop (DISEMBL)
MDDGVVQRVFEeggrdyfqqqpstsssspsilqslpvhasfdhGYYLLVKSIQELRekkggivtvgiggpsgsgkTSLAEKLASVIGCTLismenyrvgvdegndldsiDFDALVQNLQDltegkdtlipmfdyqqknrigskvikgassgvviVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVqydigdscsldsliDSIFPLFrkhiepdlhhAQIRINNRFVSSFREAIYKLKcrseapgacsisafqgneaqtdnfiemylrppsateeARINDWIKMRQSGIRYYLSigdqrivdknfiirpkaefeVGRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLrgtnrktvGAEALRmgingpwiTKSYLEMVLekkgvprlntpplfpntpttsnqesviaaprpirtnpnlvmkledlsqpwtrsptkskmepvlATWHfissdpshagssvigsssfrdtvklvpmpdsydfdrGLLLSVQAIQALLEnkglpvivgiggpsgsgktsLAHKMANIVGCEVVSLesyfkseqvkdfkyddfssldLSLLSKNisdirngrrtkvpifdletgarsgfkelevsedcgviIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVqrdksrmgcfmsqndimmtVFPMFQQHIEPHLVHAHLKirndfdpvlspesslfvlksnkqVAYQDILKIldpakfcssAQNFIDMYlrlpgiptngqltesdcIRVRICEGRFALLireplregnfiiqpkvdfdisISTVAGLLNLGYQAVAYIEASAFIYqdgkvrll
Flexible Loop (DISEMBL)
MDDGVVQRVFEEGGRDYFQQQPSTSSSSPSILQSLPVHASFDHGYYLLVKSIQELREKKGGivtvgiggpsgsgKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQqknrigskvikgassgvvIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKCRSEAPGACSISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLsigdqrivdKNFIIRPKAEFEVGRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGtnrktvgaealrmgingpwITKSYLEMVLEKKGVPRLNTPplfpntpttsnqesviaaprpirtnpnLVMKLEDLSQPWTRSPTKSKMEPVLATWHFISSDPSHAGSSVIGSSSFRDTVKLVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLsknisdirngrrtkvpifdletgarsgfkelevSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLIsrvqrdksrmGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSAQNFIDMYLRLPGIptngqltesdcIRVRICEGRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKVRLL
Low Complexity Region (SEG)
MDDGVVQRVFEEGGRDYFqqqpstsssspsilqslpVHASFDHGYYLLVKSIQELREKkggivtvgiggpsgsgktSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYdigdscsldslidsiFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKCRSEAPGACSISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNRKTVGAEALRMGINGPWITKSYLEMVLEKKGVPRlntpplfpntpttSNQESVIAAPRPIRTNPNLVMKLEDLSQPWTRSPTKSKMEPVLATWHFISSDPshagssvigsssFRDTVKLVPMPDSYDFDRGLLLSVQAIQALLENKGLpvivgiggpsgsgKTSLAHKMANIVGCEVVSLESYFKSEQVkdfkyddfssldlsllskNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKVRLL
Disordered region (IsUnstruct)
**********************************LPVHASFDHGYYLLVKSIQELREKKGGIVTVGIGG*******SLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKCRSEAPGACSISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNRKTVGAEALRMGINGPWITKSYLEMVLEKKGV********************************************************VLATWHFI****************FRDTVKLVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDG*****
Disordered Region (DISOPRED)
****VVQ*VFE*****************************FDHGYYLLVKSIQ*****KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS**IKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKCRSEA****************DNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNRKTVGAEALRMGINGPWITKSYLEMVLEKKG****************************************************************************************VPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVA***********K**SSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKVRLL
Disordered Region (DISEMBL)
MDDGVVQRVFEEGGRDY**************LQSLPVHASFDHGYYLLVKSIQELREKKGGIVTVGIGGPS********EKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKCRSEAPGACSISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNRKTVGAEALRMGINGPWITKSYLEMVLEKKGVPRLNTPPLFPNTPTTSNQESVIAAPRPIRTNPNLVMKLEDLSQPWTRSPTKSKMEPVLATWHFISSDPSHAGSSVIGSSSFRDTVKLVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKVRLL
Disordered Region (DISPRO)
***GVVQRVFEEGGRDY***********PSILQSLPVHASFDHGYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKCRSEAPGACSISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNRKTVGAEALRMGINGPWITKSYLEMVLEKKGVPRLNTPPLFPNTPTTSNQESVIAAPRPIRTNPNLVMKLEDLSQPWTRSPTKSKMEPVLATWHFISSDP*H*G**VIGSSSFRDTVKLVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKVRLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDGVVQRVFEEGGRDYFQQQPSTSSSSPSILQSLPVHASFDHGYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKCRSEAPGACSISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNRKTVGAEALRMGINGPWITKSYLEMVLEKKGVPRLNTPPLFPNTPTTSNQESVIAAPRPIRTNPNLVMKLEDLSQPWTRSPTKSKMEPVLATWHFISSDPSHAGSSVIGSSSFRDTVKLVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKVRLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	818	2.2.26 [Sep-21-2011]
Q54R62	449	Uridine-cytidine kinase C	yes	no	0.403	0.734	0.376	3e-59
Q9GNF0	492	Uridine-cytidine kinase D	no	no	0.458	0.762	0.311	9e-45
B5ZBE2	207	Uridine kinase OS=Ureapla	yes	no	0.210	0.830	0.320	6e-14
Q9PQF9	207	Uridine kinase OS=Ureapla	yes	no	0.205	0.811	0.314	3e-13
B1AIX1	207	Uridine kinase OS=Ureapla	yes	no	0.205	0.811	0.314	3e-13
Q9Z7H0	222	Uridine kinase OS=Chlamyd	yes	no	0.222	0.819	0.269	1e-10
Q38VV6	211	Uridine kinase OS=Lactoba	yes	no	0.209	0.810	0.297	1e-10
O74427	454	Uridine kinase OS=Schizos	yes	no	0.163	0.295	0.331	1e-10
P44533	213	Uridine kinase OS=Haemoph	yes	no	0.202	0.779	0.306	2e-10
A5UFT8	213	Uridine kinase OS=Haemoph	yes	no	0.202	0.779	0.306	2e-10

>sp|Q54R62|UCKC_DICDI Uridine-cytidine kinase C OS=Dictyostelium discoideum GN=udkC PE=3 SV=1

 Score =  230 bits (587), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 128/340 (37%), Positives = 211/340 (62%), Gaps = 10/340 (2%)

Query: 482 RDTVKLVPMPDSYDFDRGLLLSVQAIQALLE-NKGLPVIVGIGGPSGSGKTSLAHKMANI 540
           R T+K  P+ D+  FD+G  L+V+AIQ++ + ++G  ++VGI GPSG+GKTS+A K+ ++
Sbjct: 17  RYTIK--PLKDTLSFDKGFFLAVRAIQSIRKKSQGSVIVVGIAGPSGAGKTSIAQKIVSV 74

Query: 541 VGCEV-VSLESYF-KSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598
           +   + +SL++Y   S Q+ +  YDD+  +D  LL KNISD+ + + T +P++D     R
Sbjct: 75  LPKSILISLDNYLDSSRQIIEENYDDYRLVDFELLKKNISDLISNKPTDLPLYDFTKSGR 134

Query: 599 SGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC-- 656
             +K ++  E   V++ EG+YALH EIR  LDL +++ GGVH  LI R+ RD  R G   
Sbjct: 135 YAYKRVQPPE-SKVLLIEGIYALHEEIRHLLDLRVSISGGVHFDLIKRIFRDVHRTGQQP 193

Query: 657 FMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILK 716
             S   I  TV+PM++  IEP L  A +++ N F+P     + +++LKS KQ    D++ 
Sbjct: 194 HESLQQITDTVYPMYKAFIEPDLQLAEIQVVNKFNPFGGLLNPIYILKSVKQGVTVDMIH 253

Query: 717 -ILDPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGNFI 775
            +L+ +    +   + D+YL +P   T    +  D IRVR  +G+++++  E ++EG FI
Sbjct: 254 SVLNKSTIQENTARYYDIYL-IPPNTTFANSSSCDWIRVRNADGQYSIMFSEEIKEGPFI 312

Query: 776 IQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKV 815
           I P+VDF + ++ + GL++LGYQ VA I   + I++DGK+
Sbjct: 313 ISPRVDFVVGVNMLGGLMSLGYQMVAIIHRKSTIFKDGKI 352

Catalyzes the conversion of uridine into uridine monophosphate and cytidine into cytidine monophosphate in the pyrimidine salvage pathway.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 8

>sp|Q9GNF0|UCKD_DICDI Uridine-cytidine kinase D OS=Dictyostelium discoideum GN=udkD PE=2 SV=1

 Score =  182 bits (462), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 128/411 (31%), Positives = 215/411 (52%), Gaps = 36/411 (8%)

Query: 32  LQSLPVHASFDHGYYLLVKSIQELREKK-GGIVTVGIGGPSGSGKTSLAEKLASVIGCTL 90
           ++ +P   SFD G++   ++I+ L EK    I+ +GI GP G+GKT+LA K+ S++   +
Sbjct: 79  IKQVPYQLSFDQGFFHACRAIEILTEKDPKRIICLGIAGPVGAGKTTLANKIGSLVNGVI 138

Query: 91  ISMENY-RVGVDEGNDLDS---IDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIK 146
           IS++++ ++   + N+ D    IDFD ++  L +L E K  +IP        ++ S+ I 
Sbjct: 139 ISLQDFVKLENVKDNNYDDPVLIDFDKVISTLNELKENKTVIIPKI---VNRKMESRSIS 195

Query: 147 GASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDI---GDSCSLDSL--- 200
            ++S V+I++G YAL AR+R LLDI VA+ GGVH  LI  +   I   G + S D L   
Sbjct: 196 LSTSKVIILEGAYALSARIRPLLDISVAITGGVHLDLIKSIMRGIVTSGKNSSKDVLAQI 255

Query: 201 IDSIFPLFRKHIEPDLHHAQIRINNRF--VSSFREAIYKLKCRSEAPGAC---SISAFQG 255
            + +FP+F+  +EPDL  A+I+I++ F  +S   E +Y  K + +         +S+   
Sbjct: 256 TNVVFPMFKAFVEPDLDQAKIKIHSSFNPMSQVVEPVYVCKAKYDNNKQFFDQFLSSLNV 315

Query: 256 NEAQTDNFIEMYLRPPS----ATEEARINDWIKMRQS-----GIRYYLSIGDQRIVDKNF 306
              +  NF +MYL PP        +A   +WI++R+S      I +Y       ++D   
Sbjct: 316 VPVKK-NFSDMYLYPPKYGVDGISQADKRNWIRIRRSEHGQFNITFY-----NEMMDGAV 369

Query: 307 IIRPKAEFEVGRMTLGGLLDLGYSVVASYKRA-STYVVYGNLSVSFETIDTLDETFMVLR 365
             RP   FE+   TLGGLL LGY + A   R    +     + ++ E I  L++ F+ ++
Sbjct: 370 NTRPSLNFEISVKTLGGLLSLGYQIGAILNRTVEVWYDKNGVVITKEYIKELEKHFIQIK 429

Query: 366 GTNRKTVGAEALRMGINGPWITKSYLEMVLEK-KGVPRLNTPPLFPNTPTT 415
           G +R+ V   A ++ I G  + +++L +  +K K     N   L PN   +
Sbjct: 430 GHSRREVLDSAEKLKITGNHVPQTFLYLYFKKLKKSKNPNYSKLKPNNTNS 480

Catalyzes the conversion of uridine into uridine monophosphate and cytidine into cytidine monophosphate in the pyrimidine salvage pathway.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|B5ZBE2|URK_UREU1 Uridine kinase OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=udk PE=3 SV=1

 Score = 80.5 bits (197), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 99/187 (52%), Gaps = 15/187 (8%)

Query: 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL----ESYFKSE------QVKDFKY 562
           N   P++V I G SGSGKT+ A+++   +     S+    +SY+ S       + +   Y
Sbjct: 2   NAKSPILVLIAGASGSGKTTFANEIVARIPQNTTSVIICQDSYYISNSQLNKNERRLINY 61

Query: 563 DDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH 622
           D  SS +  L+ + +SDI+  ++ KVPI+D +T  R   K +++S D  VI+FEG+YA++
Sbjct: 62  DHPSSFEWDLMREQLSDIKKRKKIKVPIYDYKTEIRLD-KTIDIS-DVDVIVFEGIYAIY 119

Query: 623 PE-IRKSLDLWIAVVGGVHSHLISRVQRD-KSRMGCFMSQ-NDIMMTVFPMFQQHIEPHL 679
            + I +  DL + +       LI R+ RD   R   F S       TV PM+ Q +EP  
Sbjct: 120 DDVINQIADLKVFIETPKDECLIRRILRDVNERNRSFESVITQWRSTVSPMYDQFVEPSK 179

Query: 680 VHAHLKI 686
            +A++ +
Sbjct: 180 KNANVSV 186

Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) (taxid: 565575)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q9PQF9|URK_UREPA Uridine kinase OS=Ureaplasma parvum serovar 3 (strain ATCC 700970) GN=udk PE=3 SV=1

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 23/191 (12%)

Query: 513 NKGLPVIVGIGGPSGSGKTSLAHKM--------ANIVGCEVVSLESYFKS------EQVK 558
           N   P+++ I G SGSGKT+ A+++         ++V C+    +SY+ S      ++ +
Sbjct: 2   NTKSPILILIAGASGSGKTTFANEIIARIPKNTTSVVICQ----DSYYISNSQLNKKERR 57

Query: 559 DFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGV 618
              YD  SS +  L+ + +SDI+  ++ KVPI+D +T  R   K +++S D  VI+ EG+
Sbjct: 58  LINYDHPSSFEWELMREQLSDIKKRKKIKVPIYDYKTEIRLD-KTIDIS-DVDVIVLEGI 115

Query: 619 YALHPE-IRKSLDLWIAVVGGVHSHLISRVQRD-KSRMGCFMSQ-NDIMMTVFPMFQQHI 675
           YA++ + I +  DL I +       LI R+ RD   R   F S       TV PM+ Q +
Sbjct: 116 YAIYDDVINQIADLKIFIETPKDECLIRRILRDVNERNRSFESVITQWRSTVSPMYDQFV 175

Query: 676 EPHLVHAHLKI 686
           EP   +A++ +
Sbjct: 176 EPSKKNANVSV 186

Ureaplasma parvum serovar 3 (strain ATCC 700970) (taxid: 273119)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|B1AIX1|URK_UREP2 Uridine kinase OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=udk PE=3 SV=1

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 23/191 (12%)

Query: 513 NKGLPVIVGIGGPSGSGKTSLAHKM--------ANIVGCEVVSLESYFKS------EQVK 558
           N   P+++ I G SGSGKT+ A+++         ++V C+    +SY+ S      ++ +
Sbjct: 2   NTKSPILILIAGASGSGKTTFANEIIARIPKNTTSVVICQ----DSYYISNSQLNKKERR 57

Query: 559 DFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGV 618
              YD  SS +  L+ + +SDI+  ++ KVPI+D +T  R   K +++S D  VI+ EG+
Sbjct: 58  LINYDHPSSFEWELMREQLSDIKKRKKIKVPIYDYKTEIRLD-KTIDIS-DVDVIVLEGI 115

Query: 619 YALHPE-IRKSLDLWIAVVGGVHSHLISRVQRD-KSRMGCFMSQ-NDIMMTVFPMFQQHI 675
           YA++ + I +  DL I +       LI R+ RD   R   F S       TV PM+ Q +
Sbjct: 116 YAIYDDVINQIADLKIFIETPKDECLIRRILRDVNERNRSFESVITQWRSTVSPMYDQFV 175

Query: 676 EPHLVHAHLKI 686
           EP   +A++ +
Sbjct: 176 EPSKKNANVSV 186

Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) (taxid: 505682)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q9Z7H0|URK_CHLPN Uridine kinase OS=Chlamydia pneumoniae GN=udk PE=3 SV=1

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 33/215 (15%)

Query: 521 GIGGPSGSGKTSLAHKMANIVG--CEVVSLESYFKS------EQVKDFKYDDFSSLDLSL 572
           GI G SG+GKT+L   +  I G    V+  ++Y+K       E+  +  +D   + D  L
Sbjct: 10  GITGGSGAGKTTLTQNIKEIFGEDVSVICQDNYYKDRSHYTPEERANLIWDHPDAFDNDL 69

Query: 573 LSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDL 631
           L  +I  ++N    + P+FD   G RS   E+E      VI+ EG+    + E+R  +D+
Sbjct: 70  LISDIKRLKNNEIVQAPVFDFVLGNRSK-TEIETIYPSKVILVEGILVFENQELRDLMDI 128

Query: 632 WIAVVGGVHSHLISRVQRDKSRMG----CFMSQNDIMMTVFPMFQQHIEPH------LVH 681
            I V       ++ R+ RD    G    C MS+   +  V PM ++ IEP       +VH
Sbjct: 129 RIFVDTDADERILRRMVRDVQEQGDSVDCIMSR--YLSMVKPMHEKFIEPTRKYADIIVH 186

Query: 682 AHL-----------KIRNDFDPVLSPESSLFVLKS 705
            +            KI+N  +  L  + + +++ S
Sbjct: 187 GNYRQNVVTNILSQKIKNHLENALESDETYYMVNS 221

Chlamydia pneumoniae (taxid: 83558)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q38VV6|URK_LACSS Uridine kinase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=udk PE=3 SV=1

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 17/188 (9%)

Query: 510 LLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL---ESYFKS-----EQVKDFK 561
           +   K  P+I+G+ G SGSGKT+++  +A       V L   ++Y+K      E+ ++  
Sbjct: 1   MTSQKKAPIIIGVTGGSGSGKTTVSQAIAQKFANHSVMLLPQDAYYKHQDGSFEERQETN 60

Query: 562 YDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL 621
           YD   + D  LL +  + ++N +  + P++D +   R+   E+   E   VII EG+  L
Sbjct: 61  YDHPDAFDTDLLIEQATMLKNHQPIEQPVYDYKIHNRTD--EVVHVEPQDVIILEGILVL 118

Query: 622 -HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIE 676
               +R  +D+ + V       L+ R+ RD    G   S +DI+M    TV PMF + IE
Sbjct: 119 ADARLRDLMDIKVYVDTDDDIRLLRRMSRDMESRG--RSFDDIVMQYLKTVKPMFHEFIE 176

Query: 677 PHLVHAHL 684
           P   +A L
Sbjct: 177 PTKRYADL 184

Lactobacillus sakei subsp. sakei (strain 23K) (taxid: 314315)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|O74427|URK1_SCHPO Uridine kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=urk1 PE=3 SV=1

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 14/148 (9%)

Query: 520 VGIGGPSGSGKTSLAH---KMANIVGCEVVSLESYFKS---EQVK-----DFKYDDFSSL 568
           +GI GPSGSGKTS+A    K  N+    ++SL+S++KS   EQ K     D+ +D   ++
Sbjct: 24  IGIAGPSGSGKTSVAQLIVKALNLPHVVILSLDSFYKSLNAEQKKRAFNNDYDFDSPEAI 83

Query: 569 DLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-IRK 627
           D  LL   + +++ GR+  +PI+      R    E        +II EG++AL+ E IR 
Sbjct: 84  DWDLLFVKLLELKQGRKVDIPIYSFNEHNR--LPETNTLFGASIIILEGIFALYDEKIRS 141

Query: 628 SLDLWIAVVGGVHSHLISRVQRDKSRMG 655
            LD+ + +       L  R+ RD +  G
Sbjct: 142 LLDVSVFLDTDSDVCLSRRLNRDINYRG 169

Catalyzes the conversion of uridine into UMP and cytidine into CMP in the pyrimidine salvage pathway.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|P44533|URK_HAEIN Uridine kinase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=udk PE=3 SV=1

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 20/186 (10%)

Query: 518 VIVGIGGPSGSGKTSLA---HK-MANIVGCE---VVSLESYFK-------SEQVKDFKYD 563
           +I+ I G S SGK+S+A   HK + N +GC+   +++ +SY+K       +E+VK   YD
Sbjct: 7   IIIAITGASASGKSSIASTVHKELCNELGCQEIGIITEDSYYKDQSHLEMTERVKT-NYD 65

Query: 564 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP 623
             +S+D  LL +++ +++NG    VP++      R+   E        ++I EG+  L  
Sbjct: 66  HPNSMDRDLLIQHLKNLKNGSAVDVPVYSYVEHTRTN--ETTHFTPKRIVILEGILLLTD 123

Query: 624 E-IRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLV 680
           E +R+  D+ + V   +    I R+QRD    G  +    +    TV PMF Q IEP   
Sbjct: 124 ERVRQLADISVFVDTPLDICFIRRLQRDMEERGRSLQSVIDQYRATVRPMFLQFIEPSKQ 183

Query: 681 HAHLKI 686
           +A + I
Sbjct: 184 YADIVI 189

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|A5UFT8|URK_HAEIG Uridine kinase OS=Haemophilus influenzae (strain PittGG) GN=udk PE=3 SV=1

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 20/186 (10%)

Query: 518 VIVGIGGPSGSGKTSLA---HK-MANIVGCE---VVSLESYFK-------SEQVKDFKYD 563
           +I+ I G S SGK+S+A   HK + N +GC+   +++ +SY+K       +E+VK   YD
Sbjct: 7   IIIAITGASASGKSSIASTVHKELCNELGCQEIGIITEDSYYKDQSHLEMTERVKT-NYD 65

Query: 564 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP 623
             +S+D  LL +++ +++NG    VP++      R+   E        ++I EG+  L  
Sbjct: 66  HPNSMDRDLLIQHLKNLKNGSAVDVPVYSYVEHTRTN--ETTHFTPKRIVILEGILLLTD 123

Query: 624 E-IRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLV 680
           E +R+  D+ + V   +    I R+QRD    G  +    +    TV PMF Q IEP   
Sbjct: 124 ERVRQLADISVFVDTPLDICFIRRLQRDMEERGRSLQSVIDQYRATVRPMFLQFIEPSKQ 183

Query: 681 HAHLKI 686
           +A + I
Sbjct: 184 YADIVI 189

Haemophilus influenzae (strain PittGG) (taxid: 374931)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	818
356519766	945	PREDICTED: uncharacterized protein LOC10	0.986	0.853	0.847	0.0
356577089	964	PREDICTED: uncharacterized protein LOC10	0.992	0.842	0.825	0.0
449445419	955	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.992	0.850	0.823	0.0
297737698	981	unnamed protein product [Vitis vinifera]	0.996	0.830	0.835	0.0
359472620	951	PREDICTED: uncharacterized protein LOC10	0.981	0.844	0.839	0.0
334184093	955	P-loop containing nucleoside triphosphat	0.990	0.848	0.817	0.0
334184095	954	P-loop containing nucleoside triphosphat	0.988	0.848	0.804	0.0
297814378	945	hypothetical protein ARALYDRAFT_322489 [	0.975	0.844	0.805	0.0
147801551	1066	hypothetical protein VITISV_036875 [Viti	0.866	0.665	0.847	0.0
255570128	975	uridine cytidine kinase I, putative [Ric	0.930	0.780	0.743	0.0

>gi|356519766|ref|XP_003528540.1| PREDICTED: uncharacterized protein LOC100778905 [Glycine max]

 Score = 1383 bits (3580), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 693/818 (84%), Positives = 749/818 (91%), Gaps = 11/818 (1%)

Query: 1   MDDGVVQRVFEEGGRDYFQQQPSTSSSSPSILQSLPVHASFDHGYYLLVKSIQELREKKG 60
           MDD VVQRVF EGGRDYFQQQPSTSSSS SILQSLP+H SFDHGYYLLVKSIQELREKK 
Sbjct: 1   MDDEVVQRVFHEGGRDYFQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKD 60

Query: 61  GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD 120
           G+VTVGIGGPSGSGKTSL EK+ASVIGCT+ISMENYR GVDEGND+DSIDFD L++NL+D
Sbjct: 61  GLVTVGIGGPSGSGKTSLTEKVASVIGCTVISMENYRDGVDEGNDVDSIDFDTLIKNLED 120

Query: 121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVH 180
           LT+G DT IP FDYQQK R+G K IK  SS VVIVDGTYAL A+LRSLLDIRVAVVGGVH
Sbjct: 121 LTKGNDTSIPEFDYQQKRRVGYKAIKSPSS-VVIVDGTYALHAKLRSLLDIRVAVVGGVH 179

Query: 181 FSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKC 240
           FSL+SKV+YDIGDSCSLD LIDSIFPLFRKHIEPDLHHAQIRINN FVSSFREA+YK+KC
Sbjct: 180 FSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAVYKVKC 239

Query: 241 RSEAPGACSISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQR 300
           RS+    CS  AFQGNEAQTDNFIEMYLRPPSA+EEARINDWIK+RQSGIRYYLS+GDQR
Sbjct: 240 RSKV---CS--AFQGNEAQTDNFIEMYLRPPSASEEARINDWIKVRQSGIRYYLSLGDQR 294

Query: 301 IVDKNFIIRPKAEFEVGRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDET 360
           IVDKNFIIRPKAEFEVGRMTLGGLL LGY VV SYKRAST V  G +S+SFETID L ET
Sbjct: 295 IVDKNFIIRPKAEFEVGRMTLGGLLALGYIVVVSYKRASTTVNNGKVSMSFETIDVLGET 354

Query: 361 FMVLRGTNRKTVGAEALRMGINGPWITKSYLEMVLEKKGVPRLNTPPLFPNTPTTSNQES 420
           FMV+RGTNRKTVG EALRMGINGPWITKSYLEM+LE+KGVPRL+TPPL  NT    +QE+
Sbjct: 355 FMVMRGTNRKTVGTEALRMGINGPWITKSYLEMILERKGVPRLSTPPLVSNTTVPGSQET 414

Query: 421 VIAAPRPIRTNPNLVMKLEDLSQPWTRSPTKSKMEPVLATWHFISSDPSHAGSSVIGS-- 478
           VIAAP+PIR  PNLV  L+DL QPWTRSPTKSKMEPV+A WHFISSD S   +SV+ +  
Sbjct: 415 VIAAPKPIRVTPNLVTGLDDLPQPWTRSPTKSKMEPVVAEWHFISSDSSLPDNSVLATTD 474

Query: 479 -SSFRDTVKLVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKM 537
            SSFRD+V+L PMPDS+D DRGLLL+VQAIQALLENKG+PVIVGIGGPSGSGKTSLAHKM
Sbjct: 475 PSSFRDSVRLAPMPDSFDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGSGKTSLAHKM 534

Query: 538 ANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA 597
           ANI+GCEVVSLESY+K  QVKDFKYDDFS+LDLSLLSKNI DIRNG+RTKVPIFDLE+GA
Sbjct: 535 ANIIGCEVVSLESYYK--QVKDFKYDDFSALDLSLLSKNIDDIRNGQRTKVPIFDLESGA 592

Query: 598 RSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCF 657
           RSGFKELEVSEDCGVIIFEG+YALHP+IR SLDLWIAVVGGVHSHLISRVQRDKSR+GCF
Sbjct: 593 RSGFKELEVSEDCGVIIFEGIYALHPDIRISLDLWIAVVGGVHSHLISRVQRDKSRVGCF 652

Query: 658 MSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKI 717
           +SQN+IMMTVFPMFQQ IEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNK+VAYQDI+ I
Sbjct: 653 ISQNEIMMTVFPMFQQLIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYQDIVAI 712

Query: 718 LDPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGNFIIQ 777
           LD AKFCSS Q FID+Y+RLPGIP+NGQL +SDCIRVRICEGRFALLIREP++EGNFIIQ
Sbjct: 713 LDSAKFCSSVQKFIDIYIRLPGIPSNGQLRDSDCIRVRICEGRFALLIREPIKEGNFIIQ 772

Query: 778 PKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKV 815
           PKVDFDI ISTVAGLLNLGYQAVAYIEASAFIYQDGKV
Sbjct: 773 PKVDFDIGISTVAGLLNLGYQAVAYIEASAFIYQDGKV 810

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577089|ref|XP_003556660.1| PREDICTED: uncharacterized protein LOC100787760 [Glycine max]

 Score = 1381 bits (3574), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 687/832 (82%), Positives = 745/832 (89%), Gaps = 20/832 (2%)

Query: 1   MDDGVVQRVFEEGGRDYFQQQPSTSSSSPSILQSLPV-HASFDHGYYLLVKSIQELREKK 59
           MDD VVQRVF EGGRDYFQQQPSTSSSS S +      H SFDHGYYLLVKSIQELREKK
Sbjct: 1   MDDEVVQRVFHEGGRDYFQQQPSTSSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKK 60

Query: 60  GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQ 119
            G+VTVGIGGPSGSGKTSLAEK+ASVIGCT+ISMENYRVGVDEGNDLDSIDFDAL++NL+
Sbjct: 61  DGLVTVGIGGPSGSGKTSLAEKVASVIGCTVISMENYRVGVDEGNDLDSIDFDALIKNLE 120

Query: 120 DLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGV 179
           DLT+G DT IP FDYQ+K R+G K IK ASS V I+DGTYAL A+LRSLLDIRVAVVGGV
Sbjct: 121 DLTKGNDTSIPEFDYQEKKRVGYKAIKSASSAV-ILDGTYALQAKLRSLLDIRVAVVGGV 179

Query: 180 HFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLK 239
           HFSL+SKV+YDIGDSCSLD LIDSIFPLFRKHIEPDLHHAQIRINN FVSSFREA+YK+K
Sbjct: 180 HFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAVYKVK 239

Query: 240 CRSEAPGACSISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQ 299
           CRSE+    S SAFQGNEAQTDNFIEMYLRPPSA+EEARINDWIK+RQSGIRYYLS+GDQ
Sbjct: 240 CRSESSDGHSGSAFQGNEAQTDNFIEMYLRPPSASEEARINDWIKVRQSGIRYYLSLGDQ 299

Query: 300 RIVDKNFIIRPKAEFEVGRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDE 359
           RIVDKNFIIRPKAEFEVGRMTLGGLL LGY VV SYKRAST V  G +S+SFETID L E
Sbjct: 300 RIVDKNFIIRPKAEFEVGRMTLGGLLALGYIVVVSYKRASTTVNNGKVSMSFETIDVLGE 359

Query: 360 TFMVLRGTNRKTVGAEALRMGINGPWITKSYLEMVLEKK----------------GVPRL 403
           TFMV+RGTNRKTV  EALRMGINGPWITKSYLEM+L++K                GVPRL
Sbjct: 360 TFMVMRGTNRKTVRTEALRMGINGPWITKSYLEMILQRKVTMNCDCCFAFSLSHAGVPRL 419

Query: 404 NTPPLFPNTPTTSNQESVIAAPRPIRTNPNLVMKLEDLSQPWTRSPTKSKMEPVLATWHF 463
           +TPPL  NT    +QE+VIAAP+PIR  PNLV  ++DL QPWTRSPTKSKMEPV A WHF
Sbjct: 420 STPPLVSNTTVAGSQETVIAAPKPIRVTPNLVTGIDDLPQPWTRSPTKSKMEPVAAEWHF 479

Query: 464 ISSDPSHAGSSVIGSSSFRDTVKLVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIG 523
           ISSD S   +SV+  SSFRD+++L  MPDS+D DRGLLL+VQAIQALLENKG+PVIVGIG
Sbjct: 480 ISSDSSQPDNSVLDPSSFRDSIRLASMPDSFDLDRGLLLAVQAIQALLENKGVPVIVGIG 539

Query: 524 GPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNG 583
           GPSGSGKTSLAHKMANI+GCEVVSLESY+K  QVKDFKYDDFS+LDLSLLSKNI DIRNG
Sbjct: 540 GPSGSGKTSLAHKMANIIGCEVVSLESYYK--QVKDFKYDDFSALDLSLLSKNIDDIRNG 597

Query: 584 RRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHL 643
           +RTKVPIFDLE+GARSGFKELEVSEDCGVIIFEGVYALHP+IR SLDLWIAVVGGVHSHL
Sbjct: 598 QRTKVPIFDLESGARSGFKELEVSEDCGVIIFEGVYALHPDIRISLDLWIAVVGGVHSHL 657

Query: 644 ISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVL 703
           ISRVQRDKSR+GCF+SQN+IMMTVFPMFQQ IEPHLVHAHLKIRNDFDPVLSPESSLFVL
Sbjct: 658 ISRVQRDKSRVGCFISQNEIMMTVFPMFQQLIEPHLVHAHLKIRNDFDPVLSPESSLFVL 717

Query: 704 KSNKQVAYQDILKILDPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFAL 763
           KSNK+VAYQDI+ ILD AKFCSS Q FID+Y+RLPGIP+NGQL++SDCIRVRICEGRFAL
Sbjct: 718 KSNKKVAYQDIVAILDSAKFCSSVQKFIDIYIRLPGIPSNGQLSDSDCIRVRICEGRFAL 777

Query: 764 LIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKV 815
           LIREP++EGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKV
Sbjct: 778 LIREPIKEGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKV 829

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445419|ref|XP_004140470.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101220584 [Cucumis sativus]

 Score = 1364 bits (3531), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 678/823 (82%), Positives = 742/823 (90%), Gaps = 11/823 (1%)

Query: 1   MDDGVVQRVFEEGGRDYFQQQPSTSSSSPSILQSLPVHASFDHGYYLLVKSIQELREKKG 60
           MDD VVQRV +EG RD++Q+QPS S+SS SILQSLP+H SFDHGYYLLVKSIQELREKK 
Sbjct: 1   MDDEVVQRVLQEG-RDFYQKQPSASTSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKY 59

Query: 61  GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD 120
           G+VTVGIGGPSGSGKTSLAEK+ASVIGC ++SMENYR GVDEGNDLDSIDFD LVQNL+D
Sbjct: 60  GLVTVGIGGPSGSGKTSLAEKVASVIGCNVVSMENYRDGVDEGNDLDSIDFDLLVQNLED 119

Query: 121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVH 180
           LT G+DT+IP+FD+  K R+ SK+IK ASSGVVI+DGTYAL A+LRSLLDIRVAVVGGVH
Sbjct: 120 LTNGRDTMIPVFDFHLKKRVSSKIIKSASSGVVIIDGTYALHAKLRSLLDIRVAVVGGVH 179

Query: 181 FSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKC 240
           F+L+SKV++DIGDSCSLD LIDSIFPLFRKHIEPDLHHAQIRINN FVSSFREAIYKLKC
Sbjct: 180 FNLLSKVRHDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKLKC 239

Query: 241 RSEAPGACSISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQR 300
           RSE P   S  AFQGNE   DNFIEMYLRPPSA+EEA INDWIK+RQSGI+YYL++GDQR
Sbjct: 240 RSEFPDVDSAHAFQGNETHIDNFIEMYLRPPSASEEAHINDWIKVRQSGIKYYLALGDQR 299

Query: 301 IVDKNFIIRPKAEFEVGRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDET 360
           IVDKNFIIRPKAEFEVGRMTLGGLLDLGY+VV  YKRAS  V  GN+SVS ETID+L ET
Sbjct: 300 IVDKNFIIRPKAEFEVGRMTLGGLLDLGYTVVVGYKRASISVNKGNVSVSLETIDSLGET 359

Query: 361 FMVLRGTNRK---TVGAEALRMGINGPWITKSYLEMVLEKK-----GVPRLNTPPLFPNT 412
           FMVLR +N K    +G E LRMGI G WITKSYLEM+LE+K     GVPRLNTPPL PNT
Sbjct: 360 FMVLRSSNAKLKXKIGEEVLRMGITGSWITKSYLEMILERKVTSPTGVPRLNTPPLLPNT 419

Query: 413 PTTSNQESVIAAPRPIRTNPNLVMKLEDLSQPWTRSPTKSKMEPVLATWHFISSDPSHAG 472
           P  +NQE V+ APRPIR   NLV +LEDLSQPWTRSPTKS+MEPV+ATW F+S  P  + 
Sbjct: 420 PLANNQEKVVIAPRPIRVTSNLVSRLEDLSQPWTRSPTKSQMEPVVATWQFVS--PPQSD 477

Query: 473 SSVIGSSSFRDTVKLVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTS 532
           + V   +SFRD+++L PMPDS D DRGLLL+VQAIQ LLENKGLP+IVGIGGPSGSGKTS
Sbjct: 478 NLVTDPASFRDSMRLAPMPDSCDLDRGLLLAVQAIQVLLENKGLPIIVGIGGPSGSGKTS 537

Query: 533 LAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFD 592
           LAHKMANIVGCEV+SLESY++SEQVKDFKYDDFS+LDLSLLSKNI D+RNGRRTKVP+FD
Sbjct: 538 LAHKMANIVGCEVISLESYYRSEQVKDFKYDDFSTLDLSLLSKNIDDMRNGRRTKVPLFD 597

Query: 593 LETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKS 652
           LETGARSGFKELEVSEDCGVIIFEGVYALHP+IRKSLDLWIAVVGGVHSHLISRVQRDK 
Sbjct: 598 LETGARSGFKELEVSEDCGVIIFEGVYALHPDIRKSLDLWIAVVGGVHSHLISRVQRDKC 657

Query: 653 RMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQ 712
           + GCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQ
Sbjct: 658 KAGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQ 717

Query: 713 DILKILDPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREG 772
           DILK+L+ +K CSS QNFID+YLRLPGIPTNGQLTESDCIRVRICEGRFALLIREP+REG
Sbjct: 718 DILKLLESSKACSSIQNFIDIYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPIREG 777

Query: 773 NFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKV 815
           NFIIQPKVDFDISISTVAGLLNLGYQA+AYIEASA+IYQDGKV
Sbjct: 778 NFIIQPKVDFDISISTVAGLLNLGYQAMAYIEASAYIYQDGKV 820

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737698|emb|CBI26899.3| unnamed protein product [Vitis vinifera]

 Score = 1361 bits (3523), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 705/844 (83%), Positives = 754/844 (89%), Gaps = 29/844 (3%)

Query: 1   MDDGVVQRVFEEGGRDYFQQQPSTSSSSPSILQSLPVHASFDHGYYLLVKSIQELREKKG 60
           MDD VVQR F+EGGRDY+QQQPSTSSSS SILQSLP+H SFDHGYYLLVKSIQELREKK 
Sbjct: 1   MDDEVVQRAFQEGGRDYYQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKD 60

Query: 61  GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD 120
           G+VTVGIGGPSGSGK+SLAEK+ASVIGCT++SMENYR GVD+GNDL+SIDFDALV NL+D
Sbjct: 61  GLVTVGIGGPSGSGKSSLAEKVASVIGCTVVSMENYRDGVDDGNDLNSIDFDALVSNLED 120

Query: 121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVH 180
           L  GKDTLIP+FD+Q+K R+ S+ IK ASSGVVIVDGTYAL +RLRSLLDIRVAVVGGVH
Sbjct: 121 LIRGKDTLIPVFDFQEKRRVDSRAIKSASSGVVIVDGTYALHSRLRSLLDIRVAVVGGVH 180

Query: 181 FSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKC 240
           FSL+SKV+YDIGDSCSLD LIDSIFPLFRKHIEPDLHHAQIRINN FVSSFREAIYKLKC
Sbjct: 181 FSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKLKC 240

Query: 241 RSEAPGACSISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQR 300
           +SE P   S  +F GNEAQTDNFIEMYLRPPSA EEARINDWIK+RQSGIRYYLS+GDQR
Sbjct: 241 KSETPNGHSAYSFHGNEAQTDNFIEMYLRPPSANEEARINDWIKVRQSGIRYYLSLGDQR 300

Query: 301 IVDKNFIIRPKAEFEVGRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDET 360
           IVDKN+IIRPKAEFEVGRMTLGGLL LGY+VV SYKRAST V  G+LS+SFETID+L ET
Sbjct: 301 IVDKNYIIRPKAEFEVGRMTLGGLLALGYTVVVSYKRASTSVSNGHLSMSFETIDSLGET 360

Query: 361 FMVLRGTNRKTVGAEALRMGINGPWITKSYLEMVLEKKGVPRLNTPPLFPNTPTTSNQES 420
           FMVLRGT+RKTVGAE LRMG+NGPWITKSYLE++LE+KGVPRLNTPPL  +   TSNQE 
Sbjct: 361 FMVLRGTDRKTVGAEVLRMGVNGPWITKSYLELILERKGVPRLNTPPLLSSISPTSNQEK 420

Query: 421 VIAAPRPIRTNPNLVMKLEDLSQPWTRSPTKSKMEPVLATWHFISSDPSHAGSSVIGSSS 480
           V+ AP+PIR  PNLV +LEDLSQPWTRSPTKSKMEPVLATWHFIS DP HA SSV   SS
Sbjct: 421 VVVAPKPIRITPNLVTRLEDLSQPWTRSPTKSKMEPVLATWHFISPDPLHADSSVTDPSS 480

Query: 481 FRDTVKLVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGI------------------ 522
           FRDT++L PMPDSYD DRGLLLSVQAIQALLENKGLPVIVGI                  
Sbjct: 481 FRDTLRLAPMPDSYDLDRGLLLSVQAIQALLENKGLPVIVGIGNMEINQLFKFVITYFQF 540

Query: 523 -----------GGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLS 571
                      GGPSGSGKTSLAHKMANIVGCEVVSLESY+KSE VKDFK DDFSSLDLS
Sbjct: 541 SGRVGSHPAIHGGPSGSGKTSLAHKMANIVGCEVVSLESYYKSEHVKDFKCDDFSSLDLS 600

Query: 572 LLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDL 631
           LLSKNI D++N RRTKVPIFDLETGARSGFKELEVSEDCGV+IFEGVYALHPEIRKSLDL
Sbjct: 601 LLSKNIDDVKNCRRTKVPIFDLETGARSGFKELEVSEDCGVVIFEGVYALHPEIRKSLDL 660

Query: 632 WIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691
           WIAVVGGVHSHLISRVQRDKSR   FMSQN+IMMTVFPMFQQHIEPHLVHAHLKIRNDFD
Sbjct: 661 WIAVVGGVHSHLISRVQRDKSRARSFMSQNEIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 720

Query: 692 PVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDC 751
           PVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSS QNFID+YL+LPG   NG LTESDC
Sbjct: 721 PVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSVQNFIDIYLKLPGTSANGFLTESDC 780

Query: 752 IRVRICEGRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQ 811
           IRVRICEGRFALLIREP+REGNFIIQPKVDFDISISTV+GLLNLGYQAVAYIEASAFIYQ
Sbjct: 781 IRVRICEGRFALLIREPIREGNFIIQPKVDFDISISTVSGLLNLGYQAVAYIEASAFIYQ 840

Query: 812 DGKV 815
           DGK+
Sbjct: 841 DGKI 844

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472620|ref|XP_002280757.2| PREDICTED: uncharacterized protein LOC100261233 [Vitis vinifera]

 Score = 1333 bits (3451), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 696/829 (83%), Positives = 744/829 (89%), Gaps = 26/829 (3%)

Query: 1   MDDGVVQRVFEEGGRDYFQQQPSTSSSSPSILQSLPVHASFDHGYYLLVKSIQELREKKG 60
           MDD VVQR F+EGGRDY+QQQPSTSSSS SILQSLP+H SFDHGYYLLVKSIQELREKK 
Sbjct: 1   MDDEVVQRAFQEGGRDYYQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKD 60

Query: 61  GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD 120
           G+VTVGIGGPSGSGK+SLAEK+ASVIGCT++SMENYR GVD+GNDL+SIDFDALV NL+D
Sbjct: 61  GLVTVGIGGPSGSGKSSLAEKVASVIGCTVVSMENYRDGVDDGNDLNSIDFDALVSNLED 120

Query: 121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVH 180
           L  GKDTLIP+FD+Q+K R+ S+ IK ASSGVVIVDGTYAL +RLRSLLDIRVAVVGGVH
Sbjct: 121 LIRGKDTLIPVFDFQEKRRVDSRAIKSASSGVVIVDGTYALHSRLRSLLDIRVAVVGGVH 180

Query: 181 FSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKC 240
           FSL+SKV+YDIGDSCSLD LIDSIFPLFRKHIEPDLHHAQIRINN FVSSFREAIYKLKC
Sbjct: 181 FSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKLKC 240

Query: 241 RSEAPGACSISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQR 300
           +SE            N     +FIEMYLRPPSA EEARINDWIK+RQSGIRYYLS+GDQR
Sbjct: 241 KSE------------NLHFAFSFIEMYLRPPSANEEARINDWIKVRQSGIRYYLSLGDQR 288

Query: 301 IVDKNFIIRPKAEFEVGRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDET 360
           IVDKN+IIRPKAEFEVGRMTLGGLL LGY+VV SYKRAST V  G+LS+SFETID+L ET
Sbjct: 289 IVDKNYIIRPKAEFEVGRMTLGGLLALGYTVVVSYKRASTSVSNGHLSMSFETIDSLGET 348

Query: 361 FMVLRGTNRKTVGAEALRMGINGPWITKSYLEMVLEKK--------------GVPRLNTP 406
           FMVLRGT+RKTVGAE LRMG+NGPWITKSYLE++LE+K              GVPRLNTP
Sbjct: 349 FMVLRGTDRKTVGAEVLRMGVNGPWITKSYLELILERKDFSHCSFQFVKLVTGVPRLNTP 408

Query: 407 PLFPNTPTTSNQESVIAAPRPIRTNPNLVMKLEDLSQPWTRSPTKSKMEPVLATWHFISS 466
           PL  +   TSNQE V+ AP+PIR  PNLV +LEDLSQPWTRSPTKSKMEPVLATWHFIS 
Sbjct: 409 PLLSSISPTSNQEKVVVAPKPIRITPNLVTRLEDLSQPWTRSPTKSKMEPVLATWHFISP 468

Query: 467 DPSHAGSSVIGSSSFRDTVKLVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGPS 526
           DP HA SSV   SSFRDT++L PMPDSYD DRGLLLSVQAIQALLENKGLPVIVGIGGPS
Sbjct: 469 DPLHADSSVTDPSSFRDTLRLAPMPDSYDLDRGLLLSVQAIQALLENKGLPVIVGIGGPS 528

Query: 527 GSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRT 586
           GSGKTSLAHKMANIVGCEVVSLESY+KSE VKDFK DDFSSLDLSLLSKNI D++N RRT
Sbjct: 529 GSGKTSLAHKMANIVGCEVVSLESYYKSEHVKDFKCDDFSSLDLSLLSKNIDDVKNCRRT 588

Query: 587 KVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISR 646
           KVPIFDLETGARSGFKELEVSEDCGV+IFEGVYALHPEIRKSLDLWIAVVGGVHSHLISR
Sbjct: 589 KVPIFDLETGARSGFKELEVSEDCGVVIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISR 648

Query: 647 VQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSN 706
           VQRDKSR   FMSQN+IMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSN
Sbjct: 649 VQRDKSRARSFMSQNEIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSN 708

Query: 707 KQVAYQDILKILDPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIR 766
           KQVAYQDILKILDPAKFCSS QNFID+YL+LPG   NG LTESDCIRVRICEGRFALLIR
Sbjct: 709 KQVAYQDILKILDPAKFCSSVQNFIDIYLKLPGTSANGFLTESDCIRVRICEGRFALLIR 768

Query: 767 EPLREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKV 815
           EP+REGNFIIQPKVDFDISISTV+GLLNLGYQAVAYIEASAFIYQDGKV
Sbjct: 769 EPIREGNFIIQPKVDFDISISTVSGLLNLGYQAVAYIEASAFIYQDGKV 817

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184093|ref|NP_178255.5| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gi|330250362|gb|AEC05456.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana]

 Score = 1326 bits (3432), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 680/832 (81%), Positives = 750/832 (90%), Gaps = 22/832 (2%)

Query: 1   MDDGVVQRVFEEGGRDYFQQQPSTSSSSPSILQSLPVHASFDHGYYLLVKSIQELREKKG 60
           MDD VVQRVF+EGGRD+FQQQPSTSSSS SILQSLP+H +FDHGYYLLVKSIQELREKK 
Sbjct: 1   MDDEVVQRVFQEGGRDFFQQQPSTSSSSSSILQSLPLHVAFDHGYYLLVKSIQELREKKD 60

Query: 61  GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD 120
           GIVTVGIGGPSGSGK+SLAEK+ASVIGCT+I+ME+YR  +D+GN+L+++DFDALVQNL+D
Sbjct: 61  GIVTVGIGGPSGSGKSSLAEKVASVIGCTVIAMEDYRDSLDDGNELETLDFDALVQNLED 120

Query: 121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVH 180
           L  GKDTL P+FD+QQK R+ SK++K  SSGVVIVDGTYAL ARLRSLLDIRVAVVGGVH
Sbjct: 121 LINGKDTLAPVFDFQQKKRVDSKMVK-TSSGVVIVDGTYALHARLRSLLDIRVAVVGGVH 179

Query: 181 FSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKC 240
           FSL+SKV+YDIGDSCSLD LIDSIFPLFRKHIEPDLHHAQIRINN FVSSFREAIYKLKC
Sbjct: 180 FSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKLKC 239

Query: 241 RSEAPGACSISAF-QGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQ 299
           ++E      +++F Q ++ Q DNFIEMYLRPPSA+EEARINDWIK+RQ+GIRYYLS+GDQ
Sbjct: 240 KTEI-----VTSFPQESDVQKDNFIEMYLRPPSASEEARINDWIKVRQAGIRYYLSLGDQ 294

Query: 300 RIVDKNFIIRPKAEFEVGRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDE 359
           RIVDK+FIIRPKAEFEVGRMTLGGLL LGY+VV SYKRAST V YGNLS+S ETIDTL E
Sbjct: 295 RIVDKHFIIRPKAEFEVGRMTLGGLLALGYNVVVSYKRASTAVSYGNLSLSRETIDTLGE 354

Query: 360 TFMVLRGTNRKTVGAEALRMGINGPWITKSYLEMVLEKK--------------GVPRLNT 405
           TF+VLRGT+RK+VGAEALRMGI GPWITKSYLE++LE K              GVPRLNT
Sbjct: 355 TFLVLRGTDRKSVGAEALRMGITGPWITKSYLELILESKVQQNLNFCKLTHFAGVPRLNT 414

Query: 406 PPLFPNTPTTSNQESVIAAPRPIRTNPNLVMKLEDLSQPWTRSPTKSKMEPVLATWHFIS 465
           PPL   +P  +NQE  I AP+PIRT PN+V +LEDLSQPWTRSPTKS+MEP++ATWHF S
Sbjct: 415 PPLLQPSPVITNQEKQIVAPKPIRTTPNIVTRLEDLSQPWTRSPTKSQMEPMVATWHFTS 474

Query: 466 SDPSHAGSSVIGSSSFRDTVKLVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGP 525
            DP H+ SSV+  SSFRD ++LVPMPDSYD DRGLLLSVQAIQALLENKG PVIVGIGGP
Sbjct: 475 YDPPHSVSSVV-DSSFRDNMRLVPMPDSYDLDRGLLLSVQAIQALLENKGPPVIVGIGGP 533

Query: 526 SGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRR 585
           SGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFK+DDFSSLDL LLSKNISDI N RR
Sbjct: 534 SGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKHDDFSSLDLPLLSKNISDITNSRR 593

Query: 586 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLIS 645
           TK+PIFDLETG R GFKELEV E+CGVIIFEGVYALHPEIR+SLDLW+AVVGGVHSHLIS
Sbjct: 594 TKLPIFDLETGTRCGFKELEVPEECGVIIFEGVYALHPEIRQSLDLWVAVVGGVHSHLIS 653

Query: 646 RVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKS 705
           RVQRDKSR+GCFMSQN+IMMTVFPMFQQHIEPHLVHAH+KIRNDFDPVLSPESSLFVLKS
Sbjct: 654 RVQRDKSRIGCFMSQNEIMMTVFPMFQQHIEPHLVHAHVKIRNDFDPVLSPESSLFVLKS 713

Query: 706 NKQVAYQDILKILDPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLI 765
           NKQV YQDIL ILD  KFCSS QNFID+Y RL G+P NGQL++SDCIRVRICEGRFA+LI
Sbjct: 714 NKQVPYQDILSILDSTKFCSSVQNFIDIYFRLSGLPANGQLSDSDCIRVRICEGRFAVLI 773

Query: 766 REPLREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKVRL 817
           REP+REGNFIIQPKVDFDIS+STVAGLLNLGYQAVAYIEASAFIYQDGKV +
Sbjct: 774 REPIREGNFIIQPKVDFDISVSTVAGLLNLGYQAVAYIEASAFIYQDGKVNV 825

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184095|ref|NP_001189495.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gi|330250363|gb|AEC05457.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana]

 Score = 1297 bits (3356), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 669/832 (80%), Positives = 743/832 (89%), Gaps = 23/832 (2%)

Query: 1   MDDGVVQRVFEEGGRDYFQQQPSTSSSSPSILQSLPVHASFDHGYYLLVKSIQELREKKG 60
           MDD VVQRVF+EGGRD+FQQQPSTSSSS SILQSLP+H +FDHGYYLLVKSIQELREKK 
Sbjct: 1   MDDEVVQRVFQEGGRDFFQQQPSTSSSSSSILQSLPLHVAFDHGYYLLVKSIQELREKKD 60

Query: 61  GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD 120
           GIVTVGIGGPSGSGK+SLAEK+ASVIGCT+I+ME+YR  +D+GN+L+++DFDALVQNL+D
Sbjct: 61  GIVTVGIGGPSGSGKSSLAEKVASVIGCTVIAMEDYRDSLDDGNELETLDFDALVQNLED 120

Query: 121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVH 180
           L  GKDTL P+FD+QQK R+ SK++K  SSGVVIVDGTYAL ARLRSLLDIRVAVVGGVH
Sbjct: 121 LINGKDTLAPVFDFQQKKRVDSKMVK-TSSGVVIVDGTYALHARLRSLLDIRVAVVGGVH 179

Query: 181 FSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKC 240
           FSL+SKV+YDIGDSCSLD LIDSIFPLFRKHIEPDLHHAQIRINN FVSSFREAIYKLKC
Sbjct: 180 FSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKLKC 239

Query: 241 RSEAPGACSISAF-QGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQ 299
           ++E      +++F Q ++ Q DNFIEMYLRPPSA+EEARINDWIK+RQ+GIRYYLS+GDQ
Sbjct: 240 KTEI-----VTSFPQESDVQKDNFIEMYLRPPSASEEARINDWIKVRQAGIRYYLSLGDQ 294

Query: 300 RIVDKNFIIRPKAEFEVGRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDE 359
           RIVDK+FIIRPKAEFEVGRMTLGGLL LGY+VV SYKRAST V YGNLS+S ETIDTL E
Sbjct: 295 RIVDKHFIIRPKAEFEVGRMTLGGLLALGYNVVVSYKRASTAVSYGNLSLSRETIDTLGE 354

Query: 360 TFMVLRGTNRKTVGAEALRMGINGPWITKSYLEMVLEKK--------------GVPRLNT 405
           TF+VLRGT+RK+VGAEALRMGI GPWITKSYLE++LE K              GVPRLNT
Sbjct: 355 TFLVLRGTDRKSVGAEALRMGITGPWITKSYLELILESKVQQNLNFCKLTHFAGVPRLNT 414

Query: 406 PPLFPNTPTTSNQESVIAAPRPIRTNPNLVMKLEDLSQPWTRSPTKSKMEPVLATWHFIS 465
           PPL   +P  +NQE  I AP+PIRT PN+V +LEDLSQPWTRSPTKS+MEP++ATWHF S
Sbjct: 415 PPLLQPSPVITNQEKQIVAPKPIRTTPNIVTRLEDLSQPWTRSPTKSQMEPMVATWHFTS 474

Query: 466 SDPSHAGSSVIGSSSFRDTVKLVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGP 525
            DP H+ SSV+  SSFRD ++LVPMPDSYD DRGLLLSVQAIQALLENKG PVIVGIGGP
Sbjct: 475 YDPPHSVSSVV-DSSFRDNMRLVPMPDSYDLDRGLLLSVQAIQALLENKGPPVIVGIGGP 533

Query: 526 SGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRR 585
           SGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFK+DDFSSLDL LLSKNISDI N RR
Sbjct: 534 SGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKHDDFSSLDLPLLSKNISDITNSRR 593

Query: 586 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLIS 645
           TK+PIFDLETG R GFKELEV E+CGV+    ++  + EIR+SLDLW+AVVGGVHSHLIS
Sbjct: 594 TKLPIFDLETGTRCGFKELEVPEECGVVSDHSLHISY-EIRQSLDLWVAVVGGVHSHLIS 652

Query: 646 RVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKS 705
           RVQRDKSR+GCFMSQN+IMMTVFPMFQQHIEPHLVHAH+KIRNDFDPVLSPESSLFVLKS
Sbjct: 653 RVQRDKSRIGCFMSQNEIMMTVFPMFQQHIEPHLVHAHVKIRNDFDPVLSPESSLFVLKS 712

Query: 706 NKQVAYQDILKILDPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLI 765
           NKQV YQDIL ILD  KFCSS QNFID+Y RL G+P NGQL++SDCIRVRICEGRFA+LI
Sbjct: 713 NKQVPYQDILSILDSTKFCSSVQNFIDIYFRLSGLPANGQLSDSDCIRVRICEGRFAVLI 772

Query: 766 REPLREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKVRL 817
           REP+REGNFIIQPKVDFDIS+STVAGLLNLGYQAVAYIEASAFIYQDGKV +
Sbjct: 773 REPIREGNFIIQPKVDFDISVSTVAGLLNLGYQAVAYIEASAFIYQDGKVNV 824

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814378|ref|XP_002875072.1| hypothetical protein ARALYDRAFT_322489 [Arabidopsis lyrata subsp. lyrata] gi|297320910|gb|EFH51331.1| hypothetical protein ARALYDRAFT_322489 [Arabidopsis lyrata subsp. lyrata]

 Score = 1293 bits (3345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 662/822 (80%), Positives = 731/822 (88%), Gaps = 24/822 (2%)

Query: 1   MDDGVVQRVFEEGGRDYFQQQPSTSSSSPSILQSLPVHASFDHGYYLLVKSIQELREKKG 60
           MDD VVQRVF+EGGRD+FQQQPSTSSSS SILQSLP+H +FDHGYYLLVKSIQELREKK 
Sbjct: 1   MDDEVVQRVFQEGGRDFFQQQPSTSSSSSSILQSLPLHVAFDHGYYLLVKSIQELREKKD 60

Query: 61  GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD 120
           GIVTVGIGGPSGSGK+SLAEK+ASVIGCT+I+ME+YR  +D+GN+L+++DFDALVQNL+D
Sbjct: 61  GIVTVGIGGPSGSGKSSLAEKVASVIGCTVIAMEDYRDSLDDGNELETLDFDALVQNLED 120

Query: 121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVH 180
           L +GKDTL P+FD+QQK R+ SK++K  SSGVVIVDGTYAL ARLRSLLDIRVAVVGGVH
Sbjct: 121 LIKGKDTLAPVFDFQQKKRVDSKMVK-TSSGVVIVDGTYALHARLRSLLDIRVAVVGGVH 179

Query: 181 FSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKC 240
           FSL+SKV+YDIGDSCSLD LIDSIFPLFRKHIEPDLHHAQIRINN FVSSFREAIYKLKC
Sbjct: 180 FSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKLKC 239

Query: 241 RSEAPGACSISAFQGNEAQTDNF----IEMYLRPPSATEEARINDWIKMRQSGIRYYLSI 296
           ++E    CS          T  +    I MYLRPPSA+EEARINDWIK+RQ+GIRYYLS+
Sbjct: 240 KTEV---CSFFQLLCFPLVTYVYHLTKIHMYLRPPSASEEARINDWIKVRQAGIRYYLSL 296

Query: 297 GDQRIVDKNFIIRPKAEFEV--GRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETI 354
           GDQRIVDK+FIIRPKAEFEV   RMTLGG L             ST V YGNLS+S ETI
Sbjct: 297 GDQRIVDKHFIIRPKAEFEVTVNRMTLGGEL-------------STAVSYGNLSLSRETI 343

Query: 355 DTLDETFMVLRGTNRKTVGAEALRMGINGPWITKSYLEMVLEKKGVPRLNTPPLFPNTPT 414
           DTL ETF+VLRGT+RK+VGAEALRMGI GPWITKSYLE++LE KGVPRLNTPPL   +P 
Sbjct: 344 DTLGETFLVLRGTDRKSVGAEALRMGITGPWITKSYLELILESKGVPRLNTPPLLQPSPV 403

Query: 415 TSNQESVIAAPRPIRTNPNLVMKLEDLSQPWTRSPTKSKMEPVLATWHFISSDPSHAGSS 474
            +NQE  I AP+PIRT PN+V +LEDLSQPWTRSPTKS+MEP++ATWHF S DP H+ SS
Sbjct: 404 ITNQEKQIVAPKPIRTTPNIVTRLEDLSQPWTRSPTKSQMEPMVATWHFTSYDPPHSVSS 463

Query: 475 VIGS-SSFRDTVKLVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTSL 533
           V+ + SSFRD ++LVPMPDSYD DRGLLLSVQAIQALLENKG PVIVGIGGPSGSGKTSL
Sbjct: 464 VVATDSSFRDNMRLVPMPDSYDLDRGLLLSVQAIQALLENKGPPVIVGIGGPSGSGKTSL 523

Query: 534 AHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 593
           AHKMANIVGCEVVSLESYFKSEQVKDFK+DDFSSLDL LL+KNISDI NGRRTK+P+FDL
Sbjct: 524 AHKMANIVGCEVVSLESYFKSEQVKDFKHDDFSSLDLPLLAKNISDITNGRRTKLPVFDL 583

Query: 594 ETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSR 653
           ETG R GFKELEV E+CGVIIFEGVYALHPEIR+SLDLW+AVVGGVHSHLISRVQRDKSR
Sbjct: 584 ETGTRCGFKELEVPEECGVIIFEGVYALHPEIRQSLDLWVAVVGGVHSHLISRVQRDKSR 643

Query: 654 MGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQD 713
           +GCFMSQN+IMMTVFPMFQQHIEPHLVHAH+KIRNDFDPVLSPESSLFVLKSNKQV YQD
Sbjct: 644 IGCFMSQNEIMMTVFPMFQQHIEPHLVHAHVKIRNDFDPVLSPESSLFVLKSNKQVPYQD 703

Query: 714 ILKILDPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGN 773
           IL ILD  KFCSS QNFID+Y RL G+P NGQL++SDCIRVRICEGRFA+LIREP+REGN
Sbjct: 704 ILSILDSTKFCSSVQNFIDIYFRLSGLPANGQLSDSDCIRVRICEGRFAVLIREPIREGN 763

Query: 774 FIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKV 815
           FIIQPKVDFDIS+STVAGLLNLGYQAVAYIEASAFIYQDGK+
Sbjct: 764 FIIQPKVDFDISVSTVAGLLNLGYQAVAYIEASAFIYQDGKI 805

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147801551|emb|CAN77007.1| hypothetical protein VITISV_036875 [Vitis vinifera]

 Score = 1227 bits (3174), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 610/720 (84%), Positives = 651/720 (90%), Gaps = 11/720 (1%)

Query: 105 DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDAR 164
           DLD + F  L+ + +DL  GKDTLIP+FD+Q+K R+ S+ IK ASSGVVIVDGTYAL +R
Sbjct: 263 DLDYLSFRNLLGD-RDLIRGKDTLIPVFDFQEKRRVDSRAIKSASSGVVIVDGTYALHSR 321

Query: 165 LRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRIN 224
           LRSLLDIRVAVVGGVHFSL+SKV+YDIGDSCSLD LIDSIFPLFRKHIEPDLHHAQIRIN
Sbjct: 322 LRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRIN 381

Query: 225 NRFVSSFREAIYKLKCRSEAPGACSISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIK 284
           N FVSSFREAIYKLKC+SE P   S  +F GNEAQTDNFIEMYLRPPSA EEARINDWIK
Sbjct: 382 NSFVSSFREAIYKLKCKSETPNGHSAYSFHGNEAQTDNFIEMYLRPPSANEEARINDWIK 441

Query: 285 MRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYSVVASYKRASTYVVY 344
           +RQSGIRYYLS+GDQRIVDKN+IIRPKAEFEVGRMTLGGLL LGY+VV SYKRAST V  
Sbjct: 442 VRQSGIRYYLSLGDQRIVDKNYIIRPKAEFEVGRMTLGGLLALGYTVVVSYKRASTSVSN 501

Query: 345 GNLSVSFETIDTLDETFMVLRGTNRKTVGAEALRMGINGPWITKSYLEMVLEKKGVPRLN 404
           G+LS+SFETID+L ETFMVLRGT+RKTVGAE LRMG+NGPWITKSYLE++LE+KGVPRLN
Sbjct: 502 GHLSMSFETIDSLGETFMVLRGTDRKTVGAEVLRMGVNGPWITKSYLELILERKGVPRLN 561

Query: 405 TPPLFPNTPTTSNQESVIAAPRPIRTNPNLVMKLEDLSQPWTRSPTKSKMEPVLATWHFI 464
           TPPL  +   TSNQE V+ AP+PIR  PNLV +LEDLSQPWTRSPTKSKMEPVLATWHFI
Sbjct: 562 TPPLLSSISPTSNQEKVVVAPKPIRITPNLVTRLEDLSQPWTRSPTKSKMEPVLATWHFI 621

Query: 465 SSDPSHAGSSVIG----------SSSFRDTVKLVPMPDSYDFDRGLLLSVQAIQALLENK 514
           S DP HA SSV G           SSFRDT++L PMPDSYD DRGLLLSVQAIQALLENK
Sbjct: 622 SPDPLHADSSVTGLDFSHEATTDPSSFRDTLRLAPMPDSYDLDRGLLLSVQAIQALLENK 681

Query: 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLS 574
           GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY+KSE VKDFK DDFSSLDLSLLS
Sbjct: 682 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYYKSEHVKDFKCDDFSSLDLSLLS 741

Query: 575 KNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIA 634
           KNI D++N RRTKVPIFDLETGARSGFKELEVSEDCGV+IFEGVYALHPEIRKSLDLWIA
Sbjct: 742 KNIDDVKNRRRTKVPIFDLETGARSGFKELEVSEDCGVVIFEGVYALHPEIRKSLDLWIA 801

Query: 635 VVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVL 694
           VVGGVHSHLISRVQRDKSR   FMSQN+IMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVL
Sbjct: 802 VVGGVHSHLISRVQRDKSRARSFMSQNEIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVL 861

Query: 695 SPESSLFVLKSNKQVAYQDILKILDPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRV 754
           SPESSLFVLKSNKQVAYQDILKILDPAKFCSS QNFID+YL+LPG   NG LTESDCIRV
Sbjct: 862 SPESSLFVLKSNKQVAYQDILKILDPAKFCSSVQNFIDIYLKLPGTSANGFLTESDCIRV 921

Query: 755 RICEGRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGK 814
           RICEGRFALLIREP+REGNFIIQPKVDFDISISTV+GLLNLGYQAVAYIEASAFIYQDGK
Sbjct: 922 RICEGRFALLIREPIREGNFIIQPKVDFDISISTVSGLLNLGYQAVAYIEASAFIYQDGK 981

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570128|ref|XP_002526026.1| uridine cytidine kinase I, putative [Ricinus communis] gi|223534673|gb|EEF36366.1| uridine cytidine kinase I, putative [Ricinus communis]

 Score = 1199 bits (3103), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/829 (74%), Positives = 676/829 (81%), Gaps = 68/829 (8%)

Query: 1   MDDGVVQRVFEEGGRDYFQQQPSTSSSSPSILQSLPVHASFDHGYYLLVKSIQELREKKG 60
           M+D VVQRV +EGGRDYFQQ PSTSSSS  +     +H SFDHGYYLLVKSIQELREKK 
Sbjct: 1   MEDEVVQRVLQEGGRDYFQQTPSTSSSSSILQSLP-LHVSFDHGYYLLVKSIQELREKKE 59

Query: 61  GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD 120
           G VTVGIGGPSGSGKTSLAEK+ASVIGCT+ISMENYRVGVD+GNDLDSIDFD LVQNL+D
Sbjct: 60  GFVTVGIGGPSGSGKTSLAEKVASVIGCTVISMENYRVGVDDGNDLDSIDFDGLVQNLED 119

Query: 121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVH 180
           L +G DT IP+FDYQQK R+GS+ I+ ASSGVV                       GGVH
Sbjct: 120 LLKGNDTSIPVFDYQQKKRVGSQAIQSASSGVV-----------------------GGVH 156

Query: 181 FSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKC 240
           F+L+SKV+YDIGD+CSLD LIDSIFPLFRKHIEPDLHHAQ+ +      S +  ++ L C
Sbjct: 157 FNLLSKVRYDIGDTCSLDYLIDSIFPLFRKHIEPDLHHAQVGL----AVSLKSLVFFL-C 211

Query: 241 RSEAPGACSISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQR 300
             +AP                         P   +    +DWIK+RQSGIRYYLS+GDQR
Sbjct: 212 PPQAP-------------------------PYLMKFRNRSDWIKVRQSGIRYYLSLGDQR 246

Query: 301 IVDKNFIIRPKAEFEVGRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDET 360
           IVDKNFIIRPKAEFEVGRMTLGGLLDLGY+VV SYKR ST V  GNLS+S ETIDTL ET
Sbjct: 247 IVDKNFIIRPKAEFEVGRMTLGGLLDLGYTVVVSYKRESTSVSNGNLSLSMETIDTLGET 306

Query: 361 FMVLRGTNRKTVGAEALRMGINGPWITKSYLEMVLEK-----KG---------VPRLNTP 406
           F VLRG +RKTVGAEALRM + G WITKSYLEM+LEK     KG         +PRL+TP
Sbjct: 307 FTVLRGMDRKTVGAEALRMSMIGQWITKSYLEMILEKMSNEKKGWDLASFLLHLPRLSTP 366

Query: 407 PLFPNTPTTSNQESVIAAPRPIRTNPNLVMKLEDLSQPWTRSPTKSKMEPVLATWHFISS 466
           P   NT T +NQE +I+AP+PIRT  NL+  LEDLSQPWTRSPTKS+MEPV+A+W  IS 
Sbjct: 367 PPLSNTSTINNQERLISAPKPIRTTTNLITGLEDLSQPWTRSPTKSQMEPVVASWSLISF 426

Query: 467 DPSHAGSSVIGSSSFRDTVKLVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGPS 526
           D  H GSS +  S FRD VKLVPMPDS + DRGLLL+VQAIQ LLE+KG PVIVGIGGPS
Sbjct: 427 DQPHTGSSSVDPSCFRDNVKLVPMPDSVNLDRGLLLAVQAIQVLLEHKGPPVIVGIGGPS 486

Query: 527 GSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRT 586
           GSGKTSLAHKMANIVGCEVVSLESYF SEQVKDFK+DDF SLDLSLL+KNI DI++GRRT
Sbjct: 487 GSGKTSLAHKMANIVGCEVVSLESYFISEQVKDFKHDDFRSLDLSLLAKNIDDIKHGRRT 546

Query: 587 KVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISR 646
           KVPIFDLETGARSGFKEL VSEDCGVI+FEGVYALHPEIRKSLD WIAVVGGVHSHLI+R
Sbjct: 547 KVPIFDLETGARSGFKELGVSEDCGVIVFEGVYALHPEIRKSLDFWIAVVGGVHSHLIAR 606

Query: 647 VQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSN 706
           VQRDKSR+GCFMSQN+IMMTVFPMFQQHIEPHLVHA LKIRNDFDPVLSPESSLFVLKSN
Sbjct: 607 VQRDKSRVGCFMSQNEIMMTVFPMFQQHIEPHLVHADLKIRNDFDPVLSPESSLFVLKSN 666

Query: 707 KQVAYQDILKILDPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIR 766
           KQV+ QDILKILD AKFCSS QNFID+YL+LPGIP N QL ESDCIRVRICEGRFALLIR
Sbjct: 667 KQVSDQDILKILDSAKFCSSVQNFIDIYLKLPGIPANEQLAESDCIRVRICEGRFALLIR 726

Query: 767 EPLREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKV 815
           EP+REGNFI+QPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGK+
Sbjct: 727 EPIREGNFIVQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKI 775

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	818
DICTYBASE|DDB_G0283371	449	udkC "adenylate cyclase domain	0.403	0.734	0.332	1.6e-46
TAIR|locus:2028809	674	AT1G26190 [Arabidopsis thalian	0.433	0.526	0.305	1.1e-43
TAIR|locus:2031541	643	AT1G73980 [Arabidopsis thalian	0.435	0.553	0.303	5e-43
DICTYBASE|DDB_G0271146	492	udkD "adenylate cyclase domain	0.433	0.721	0.280	1.6e-32
CGD|CAL0002407	545	URK1 [Candida albicans (taxid:	0.081	0.122	0.394	0.0002
SGD|S000005295	501	URK1 "Uridine/cytidine kinase"	0.118	0.193	0.350	0.00048

DICTYBASE|DDB_G0283371 udkC "adenylate cyclase domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 489 (177.2 bits), Expect = 1.6e-46, P = 1.6e-46
 Identities = 113/340 (33%), Positives = 190/340 (55%)

Query:   482 RDTVKLVPMPDSYDFDRGLLLSVQAIQALLE-NKGLXXXXXXXXXXXXXKTSLAHKMANI 540
             R T+K  P+ D+  FD+G  L+V+AIQ++ + ++G              KTS+A K+ ++
Sbjct:    17 RYTIK--PLKDTLSFDKGFFLAVRAIQSIRKKSQGSVIVVGIAGPSGAGKTSIAQKIVSV 74

Query:   541 VGCEV-VSLESYF-KSEQVXXXXXXXXXXXXXXXXXXNISDIRNGRRTKVPIFDLETGAR 598
             +   + +SL++Y   S Q+                  NISD+ + + T +P++D     R
Sbjct:    75 LPKSILISLDNYLDSSRQIIEENYDDYRLVDFELLKKNISDLISNKPTDLPLYDFTKSGR 134

Query:   599 SGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC-- 656
               +K ++  E   V++ EG+YALH EIR  LDL +++ GGVH  LI R+ RD  R G   
Sbjct:   135 YAYKRVQPPES-KVLLIEGIYALHEEIRHLLDLRVSISGGVHFDLIKRIFRDVHRTGQQP 193

Query:   657 FMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDIL- 715
               S   I  TV+PM++  IEP L  A +++ N F+P     + +++LKS KQ    D++ 
Sbjct:   194 HESLQQITDTVYPMYKAFIEPDLQLAEIQVVNKFNPFGGLLNPIYILKSVKQGVTVDMIH 253

Query:   716 KILDPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGNFI 775
              +L+ +    +   + D+YL +P   T    +  D IRVR  +G+++++  E ++EG FI
Sbjct:   254 SVLNKSTIQENTARYYDIYL-IPPNTTFANSSSCDWIRVRNADGQYSIMFSEEIKEGPFI 312

Query:   776 IQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKV 815
             I P+VDF + ++ + GL++LGYQ VA I   + I++DGK+
Sbjct:   313 ISPRVDFVVGVNMLGGLMSLGYQMVAIIHRKSTIFKDGKI 352

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004849 "uridine kinase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044211 "CTP salvage" evidence=IEA

GO:0044206 "UMP salvage" evidence=IEA

TAIR|locus:2028809 AT1G26190 [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 1.1e-43, P = 1.1e-43
 Identities = 114/373 (30%), Positives = 195/373 (52%)

Query:    40 SFDHGYYLLVKSIQELREKXXXXXXXXXXXXXXXXXXSLAEKLASVI-GCTLISMENYRV 98
             SF+ G++ ++++ Q L +K                     EK+ + +    +ISM+NY  
Sbjct:    43 SFEKGFFAVIRACQLLSQKNDGIILVGVAGPSGAGKTVFTEKILNFLPSVAVISMDNYND 102

Query:    99 G--VDEGN--DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVI 154
                + +GN  D    D+D L++NL+DL EGK   +P++D++  +R+G + +    S +VI
Sbjct:   103 SSRIVDGNFDDPRLTDYDTLLKNLEDLKEGKQVEVPIYDFKSSSRVGYRTLDVPPSRIVI 162

Query:   155 VDGTYALDARLRSLLDIRVAVVGGVHFSLISKV-----QYXXXXXXXXXXXXXXXFPLFR 209
             ++G YAL  +LR LLD+RV+V GGVHF L+ +V     +                +P+++
Sbjct:   163 IEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQQPEEIIHQISETVYPMYK 222

Query:   210 KHIEPDLHHAQIRINNRF--VSSFREAIYKLKCRSEAPGACSISAF--QGNEAQTDNFIE 265
               IEPDL  AQI+I N+F   + F+   Y LK R E      I A    G+    +   +
Sbjct:   223 AFIEPDLQTAQIKIINKFNPFTGFQSPTYILKSRKEV-SVDQIKAVLSDGHTETKEETYD 281

Query:   266 MYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRMTLGGLL 325
             +YL PP    E+    +++MR    +Y L   ++ + D  F+I P+  FEV    LGGL+
Sbjct:   282 IYLLPPGEDPES-CQSYLRMRNKDGKYSLMF-EEWVTDTPFVISPRITFEVSVRLLGGLM 339

Query:   326 DLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNRKTVGAEALRMGINGPW 385
              LGY++    KR S       + V  + ++ L+  +M ++G +R+ V + A ++G+ G +
Sbjct:   340 ALGYTIATILKRNSHVFATDKVFVKIDWLEQLNRHYMQVQGKDRQLVQSTAEQLGLEGSF 399

Query:   386 ITKSYLEMV-LEK 397
             I ++Y+E + LEK
Sbjct:   400 IPRTYIEQIQLEK 412

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006796 "phosphate-containing compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=IEA;ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

TAIR|locus:2031541 AT1G73980 [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 5.0e-43, P = 5.0e-43
 Identities = 113/372 (30%), Positives = 196/372 (52%)

Query:    40 SFDHGYYLLVKSIQELREKXXXXXXXXXXXXXXXXXXSLAEKLASVI-GCTLISMENYRV 98
             SF+ G+Y ++++ Q L +K                     EK+ + +    +I+M+NY  
Sbjct:    43 SFEKGFYAVIRACQLLAQKNDGLILVGLAGPSGAGKTIFTEKILNFMPSIAIINMDNYND 102

Query:    99 G--VDEGN--DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVI 154
             G  V +GN  D    D+D L+ N+  L +GK   +P++D++  +RIG + ++  SS +VI
Sbjct:   103 GTRVIDGNFDDPRLTDYDTLLDNIHGLRDGKPVQVPIYDFKSSSRIGYRTLEVPSSRIVI 162

Query:   155 VDGTYALDARLRSLLDIRVAVVGGVHFSLISKV-----QYXXXXXXXXXXXXXXXFPLFR 209
             ++G YAL  +LR LLD+RV+V GGVHF L+ +V     +                +P+++
Sbjct:   163 LEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYK 222

Query:   210 KHIEPDLHHAQIRINNRF--VSSFREAIYKLKC-RSEAPGACSISAFQGNEAQTDNFIEM 266
               IEPDL  AQI+I N+F   S F+   Y LK  ++  P     +  +  + +T+   ++
Sbjct:   223 AFIEPDLKTAQIKILNKFNPFSGFQNPTYILKSSKAVTPEQMKAALSEDFKERTEETYDI 282

Query:   267 YLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRMTLGGLLD 326
             YL PP    EA    +++MR    +Y L   ++ + D+ FII P+  FEV    LGGL+ 
Sbjct:   283 YLLPPGEDPEA-CQSYLRMRNRDGKYNLMF-EEWVTDRPFIISPRITFEVSVRLLGGLMA 340

Query:   327 LGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNRKTVGAEALRMGINGPWI 386
             LGY++    KR S       + V  + ++ L+ T++ ++G +R  V   A ++G+ G ++
Sbjct:   341 LGYTIATILKRKSHIFDDDKVIVKTDWLEQLNRTYVQVQGKDRTFVKNVADQLGLEGSYV 400

Query:   387 TKSYLEMV-LEK 397
               +Y+E + LE+
Sbjct:   401 PHTYIEQIQLER 412

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006796 "phosphate-containing compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=ISS

GO:0016301 "kinase activity" evidence=IEA;ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

DICTYBASE|DDB_G0271146 udkD "adenylate cyclase domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 363 (132.8 bits), Expect = 1.6e-32, P = 1.6e-32
 Identities = 106/378 (28%), Positives = 180/378 (47%)

Query:    40 SFDHGYYLLVKSIQELREKXXXXXXXXXXXX-XXXXXXSLAEKLASVIGCTLISMENY-R 97
             SFD G++   ++I+ L EK                   +LA K+ S++   +IS++++ +
Sbjct:    87 SFDQGFFHACRAIEILTEKDPKRIICLGIAGPVGAGKTTLANKIGSLVNGVIISLQDFVK 146

Query:    98 VGVDEGNDLDS---IDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVI 154
             +   + N+ D    IDFD ++  L +L E K  +IP        ++ S+ I  ++S V+I
Sbjct:   147 LENVKDNNYDDPVLIDFDKVISTLNELKENKTVIIPKI---VNRKMESRSISLSTSKVII 203

Query:   155 VDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYXXXXXXXXXXXXXXX------FPLF 208
             ++G YAL AR+R LLDI VA+ GGVH  LI  +                       FP+F
Sbjct:   204 LEGAYALSARIRPLLDISVAITGGVHLDLIKSIMRGIVTSGKNSSKDVLAQITNVVFPMF 263

Query:   209 RKHIEPDLHHAQIRINNRF--VSSFREAIYKLKCRSEAPGACSISAFQG-NEAQTD-NFI 264
             +  +EPDL  A+I+I++ F  +S   E +Y  K + +             N      NF 
Sbjct:   264 KAFVEPDLDQAKIKIHSSFNPMSQVVEPVYVCKAKYDNNKQFFDQFLSSLNVVPVKKNFS 323

Query:   265 EMYLRPPS----ATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRMT 320
             +MYL PP        +A   +WI++R+S    +       ++D     RP   FE+   T
Sbjct:   324 DMYLYPPKYGVDGISQADKRNWIRIRRSEHGQFNITFYNEMMDGAVNTRPSLNFEISVKT 383

Query:   321 LGGLLDLGYSVVASYKRA-STYVVYGNLSVSFETIDTLDETFMVLRGTNRKTVGAEALRM 379
             LGGLL LGY + A   R    +     + ++ E I  L++ F+ ++G +R+ V   A ++
Sbjct:   384 LGGLLSLGYQIGAILNRTVEVWYDKNGVVITKEYIKELEKHFIQIKGHSRREVLDSAEKL 443

Query:   380 GINGPWITKSYLEMVLEK 397
              I G  + +++L +  +K
Sbjct:   444 KITGNHVPQTFLYLYFKK 461

GO:0016301 "kinase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004849 "uridine kinase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044211 "CTP salvage" evidence=IEA

GO:0044206 "UMP salvage" evidence=IEA

CGD|CAL0002407 URK1 [Candida albicans (taxid:5476)]

 Score = 126 (49.4 bits), Expect = 0.00020, P = 0.00020
 Identities = 28/71 (39%), Positives = 46/71 (64%)

Query:   107 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG-SKVIKGASSGVVIVDGTYAL-DAR 164
             DS+DFD LV+ + +L +G  T IP++ +   NR   +  I GA+  V+IV+G YAL D +
Sbjct:   154 DSLDFDLLVETIGNLKKGGKTTIPVYSFTSHNRTSKTNTIYGAN--VIIVEGLYALHDQQ 211

Query:   165 LRSLLDIRVAV 175
             L  ++D+++ V
Sbjct:   212 LLDMMDLKIYV 222

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005816 "spindle pole body" evidence=IEA

GO:0032153 "cell division site" evidence=IEA

GO:0004849 "uridine kinase activity" evidence=IEA

GO:0008655 "pyrimidine-containing compound salvage" evidence=IEA

SGD|S000005295 URK1 "Uridine/cytidine kinase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 122 (48.0 bits), Expect = 0.00048, P = 0.00048
 Identities = 41/117 (35%), Positives = 66/117 (56%)

Query:    77 SLAEKLASVIGC---TLISMENYR--VGVDEG-----NDLD-----SIDFDALVQNLQDL 121
             S+A K+ S I      LIS++N+   +G ++      N+ D     +I+ D   + + +L
Sbjct:    71 SVAAKIVSSINVPWTVLISLDNFYNPLGPEDRARAFKNEYDFDEPNAINLDLAYKCILNL 130

Query:   122 TEGKDTLIPMFDYQQKNRIGSK--VIKGASSGVVIVDGTYAL-DARLRSLLDIRVAV 175
              EGK T IP++ +   NR+  K  VI GAS  VV+++G YAL D RL  L+D+++ V
Sbjct:   131 KEGKRTNIPVYSFVHHNRVPDKNIVIYGAS--VVVIEGIYALYDRRLLDLMDLKIYV 185


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.138   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      818       711   0.00084  121 3  11 22  0.37    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  339 KB (2171 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  49.59u 0.10s 49.69t   Elapsed:  00:00:03
  Total cpu time:  49.59u 0.10s 49.69t   Elapsed:  00:00:03
  Start:  Tue May 21 10:04:22 2013   End:  Tue May 21 10:04:25 2013

GO:0004849 "uridine kinase activity" evidence=IEA;IMP

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0044211 "CTP salvage" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008655 "pyrimidine-containing compound salvage" evidence=IGI;IMP

GO:0044206 "UMP salvage" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	818
PLN02318	656	PLN02318, PLN02318, phosphoribulokinase/uridine ki	2e-66
PLN02318	656	PLN02318, PLN02318, phosphoribulokinase/uridine ki	3e-58
cd02028	179	cd02028, UMPK_like, Uridine monophosphate kinase_l	3e-54
cd02028	179	cd02028, UMPK_like, Uridine monophosphate kinase_l	8e-54
COG0572	218	COG0572, Udk, Uridine kinase [Nucleotide transport	6e-26
cd02023	198	cd02023, UMPK, Uridine monophosphate kinase (UMPK,	2e-23
COG0572	218	COG0572, Udk, Uridine kinase [Nucleotide transport	3e-22
PRK05480	209	PRK05480, PRK05480, uridine/cytidine kinase; Provi	3e-22
TIGR00235	207	TIGR00235, udk, uridine kinase	2e-20
TIGR00235	207	TIGR00235, udk, uridine kinase	3e-19
PRK05480	209	PRK05480, PRK05480, uridine/cytidine kinase; Provi	2e-17
pfam00485	197	pfam00485, PRK, Phosphoribulokinase / Uridine kina	2e-17
cd02023	198	cd02023, UMPK, Uridine monophosphate kinase (UMPK,	7e-17
pfam00485	197	pfam00485, PRK, Phosphoribulokinase / Uridine kina	8e-13
PRK06696	223	PRK06696, PRK06696, uridine kinase; Validated	1e-08
PTZ00301	210	PTZ00301, PTZ00301, uridine kinase; Provisional	5e-08
cd02024	187	cd02024, NRK1, Nicotinamide riboside kinase (NRK)	2e-06
cd02026	273	cd02026, PRK, Phosphoribulokinase (PRK) is an enzy	3e-06
pfam13207	114	pfam13207, AAA_17, AAA domain	4e-06
PRK06547	172	PRK06547, PRK06547, hypothetical protein; Provisio	5e-06
cd02026	273	cd02026, PRK, Phosphoribulokinase (PRK) is an enzy	1e-05
PRK09270	229	PRK09270, PRK09270, nucleoside triphosphate hydrol	2e-05
PRK07429	327	PRK07429, PRK07429, phosphoribulokinase; Provision	3e-05
PLN02348	395	PLN02348, PLN02348, phosphoribulokinase	5e-05
pfam13207	114	pfam13207, AAA_17, AAA domain	1e-04
PRK07429	327	PRK07429, PRK07429, phosphoribulokinase; Provision	1e-04
PRK06696	223	PRK06696, PRK06696, uridine kinase; Validated	2e-04
PRK06547	172	PRK06547, PRK06547, hypothetical protein; Provisio	3e-04
COG1763	161	COG1763, MobB, Molybdopterin-guanine dinucleotide	3e-04
cd02024	187	cd02024, NRK1, Nicotinamide riboside kinase (NRK)	6e-04
PRK00091	307	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosp	6e-04
PRK04182	180	PRK04182, PRK04182, cytidylate kinase; Provisional	7e-04
COG0378	202	COG0378, HypB, Ni2+-binding GTPase involved in reg	7e-04
pfam13238	128	pfam13238, AAA_18, AAA domain	0.001
cd03116	159	cd03116, MobB, Molybdenum is an essential trace el	0.001
COG0324	308	COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosph	0.002

>gnl|CDD|177952 PLN02318, PLN02318, phosphoribulokinase/uridine kinase

 Score =  233 bits (595), Expect = 2e-66
 Identities = 125/373 (33%), Positives = 215/373 (57%), Gaps = 18/373 (4%)

Query: 40  SFDHGYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRV 98
           SF+ G+++++++ Q L +K  GI+ VG+ GPSG+GKT   EK+ + +    +ISM+NY  
Sbjct: 43  SFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYND 102

Query: 99  G--VDEGN--DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVI 154
              + +GN  D    D+D L+ N+ DL  GK   +P++D++  +R+G + ++  SS +VI
Sbjct: 103 SSRIIDGNFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVI 162

Query: 155 VDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCS-----LDSLIDSIFPLFR 209
           ++G YAL  +LR LLD+RV+V GGVHF L+ +V  DI  +       +  + ++++P+++
Sbjct: 163 IEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYK 222

Query: 210 KHIEPDLHHAQIRINNRF--VSSFREAIYKLKCRSEAPGACSISAFQGNEAQ--TDNFIE 265
             IEPDL  A I+I N+F   S F+   Y LK  S +     I A    +    T+   +
Sbjct: 223 AFIEPDLQTAHIKIVNKFNPFSGFQNPTYILK-SSRSVTVEQIKAVLSEDHTETTEETYD 281

Query: 266 MYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRMTLGGLL 325
           +YL PP    E     +++MR    +Y L + ++ + D+ FII P+  FEV    LGGL+
Sbjct: 282 IYLLPPGEDPET-CQSYLRMRNRDGKYSL-MFEEWVTDEPFIISPRITFEVSVRLLGGLM 339

Query: 326 DLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNRKTVGAEALRMGINGPW 385
            LGY++    KR+S       + V  + ++ L+  ++ ++G +R  V   A ++G+ G +
Sbjct: 340 ALGYTIATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQGKDRLVVKDVAEQLGLEGSY 399

Query: 386 ITKSYLEMV-LEK 397
           I ++Y+E + LEK
Sbjct: 400 IPRTYIEQIQLEK 412

Length = 656

>gnl|CDD|177952 PLN02318, PLN02318, phosphoribulokinase/uridine kinase

 Score =  210 bits (536), Expect = 3e-58
 Identities = 115/340 (33%), Positives = 192/340 (56%), Gaps = 14/340 (4%)

Query: 482 RDTVKLVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV 541
            D  ++VP+ D   F++G  + ++A Q L +     ++VG+ GPSG+GKT    K+ N +
Sbjct: 30  SDRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89

Query: 542 -GCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSG 600
               V+S+++Y  S ++ D  +DD    D   L  NI D++ G+  +VPI+D ++ +R G
Sbjct: 90  PSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVG 149

Query: 601 FKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660
           ++ LEV     VII EG+YAL  ++R  LDL ++V GGVH  L+ RV RD  R G     
Sbjct: 150 YRTLEVPSSRIVII-EGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAG--QEP 206

Query: 661 NDIMM----TVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILK 716
            +I+     TV+PM++  IEP L  AH+KI N F+P    ++  ++LKS++ V  + I  
Sbjct: 207 EEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSSRSVTVEQIKA 266

Query: 717 ILDPAKFCSSAQNFIDMYLRLPG-IPTNGQLTESDCIRVRICEGRFALLIREPLREGNFI 775
           +L       + +   D+YL  PG  P   Q      +R+R  +G+++L+  E + +  FI
Sbjct: 267 VLS-EDHTETTEETYDIYLLPPGEDPETCQ----SYLRMRNRDGKYSLMFEEWVTDEPFI 321

Query: 776 IQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKV 815
           I P++ F++S+  + GL+ LGY     ++ S+ ++ D KV
Sbjct: 322 ISPRITFEVSVRLLGGLMALGYTIATILKRSSHVFSDDKV 361

Length = 656

>gnl|CDD|238986 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

 Score =  185 bits (471), Expect = 3e-54
 Identities = 73/178 (41%), Positives = 100/178 (56%), Gaps = 16/178 (8%)

Query: 64  TVGIGGPSGSGKTSLAEKLAS-----VIGCTLISMENYRVG-----VDEGNDLD--SIDF 111
            VGI GPSGSGKT+ A+KL++      IG  +IS+++Y V       ++GN      +D 
Sbjct: 1   VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDL 60

Query: 112 DALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDI 171
           D L +NL DL  GK+  +P++D++   R G + +K   SGVVI++G YAL+ RLRSLLDI
Sbjct: 61  DLLNKNLHDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLDI 120

Query: 172 RVAVVGGVHF-SLISKVQYDIGDSCSLDSLIDS---IFPLFRKHIEPDLHHAQIRINN 225
           RVAV GGVH   L+ +V  DI        L        P   + I P L  A I + N
Sbjct: 121 RVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMWPSVPSGEEFIIPPLQEAAIVMFN 178

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK). Length = 179

>gnl|CDD|238986 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

 Score =  183 bits (467), Expect = 8e-54
 Identities = 71/180 (39%), Positives = 107/180 (59%), Gaps = 10/180 (5%)

Query: 519 IVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFK---SEQVKDFKYDDFSSLDL 570
           +VGI GPSGSGKT+ A K++N +     G  V+SL+ Y+    + + +D  YD  S LDL
Sbjct: 1   VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDL 60

Query: 571 SLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLD 630
            LL+KN+ D+ NG+  ++PI+D  TG R G+++L++    GV+I EG+YAL+  +R  LD
Sbjct: 61  DLLNKNLHDLLNGKEVELPIYDFRTGKRRGYRKLKLPPS-GVVILEGIYALNERLRSLLD 119

Query: 631 LWIAVVGGVH-SHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRND 689
           + +AV GGVH + L+ RV RD    G       +M    P  ++ I P L  A + + N 
Sbjct: 120 IRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMWPSVPSGEEFIIPPLQEAAIVMFNS 179

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK). Length = 179

>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism]

 Score =  106 bits (266), Expect = 6e-26
 Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 14/173 (8%)

Query: 517 PVIVGIGGPSGSGKTSLAHKMANIVGCE---VVSLESYFKSEQVKDFK------YDDFSS 567
            +I+GI G SGSGKT++A +++  +G E   V+SL+ Y+K +    F+      YD   +
Sbjct: 8   VIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEA 67

Query: 568 LDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-IR 626
            DL LL +++ D++ G+   +P++D +T  R    E    E   V+I EG+  L+ E +R
Sbjct: 68  FDLDLLIEHLKDLKQGKPVDLPVYDYKTHTRE--PETIKVEPNDVVIVEGILLLYDERLR 125

Query: 627 KSLDLWIAVVGGVHSHLISRVQRD-KSRMGCFMSQ-NDIMMTVFPMFQQHIEP 677
             +DL I V       LI R++RD + R     S     + TV PM++Q IEP
Sbjct: 126 DLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQYVKTVRPMYEQFIEP 178

Length = 218

>gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2

 Score = 98.0 bits (245), Expect = 2e-23
 Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 18/178 (10%)

Query: 519 IVGIGGPSGSGKTSLAHKMANIVGCE---VVSLESYFKS------EQVKDFKYDDFSSLD 569
           I+GI G SGSGKT++A ++   +G     ++S +SY+K       E+ K+  YD   + D
Sbjct: 1   IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFD 60

Query: 570 LSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKS 628
             LL  ++ D++NG+  ++P++D +T +R   KE        VII EG+ AL+  E+R  
Sbjct: 61  FDLLISHLQDLKNGKSVEIPVYDFKTHSRL--KETVTVYPADVIILEGILALYDKELRDL 118

Query: 629 LDLWIAVVGGVHSHLISRVQRDKSRMG----CFMSQNDIMMTVFPMFQQHIEPHLVHA 682
           +DL I V       LI R++RD    G      ++Q   +  V PM +Q IEP   +A
Sbjct: 119 MDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQ--YLKFVKPMHEQFIEPTKRYA 174

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. Length = 198

>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism]

 Score = 95.4 bits (238), Expect = 3e-22
 Identities = 57/189 (30%), Positives = 105/189 (55%), Gaps = 22/189 (11%)

Query: 56  REKKGGIVTVGIGGPSGSGKTSLAEKLASVIGC---TLISMENY-----------RVGVD 101
            +K   ++ +GI G SGSGKT++A++L+  +G     +IS+++Y           R  ++
Sbjct: 2   MKKPEKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKIN 61

Query: 102 EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL 161
             +  ++ D D L+++L+DL +GK   +P++DY+   R   + IK   + VVIV+G   L
Sbjct: 62  -YDHPEAFDLDLLIEHLKDLKQGKPVDLPVYDYKTHTRE-PETIKVEPNDVVIVEGILLL 119

Query: 162 -DARLRSLLDIRVAVVGGVHFSLISKVQYDI-GDSCSLDSLID----SIFPLFRKHIEPD 215
            D RLR L+D+++ V       LI +++ D+      L+S+I+    ++ P++ + IEP 
Sbjct: 120 YDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQYVKTVRPMYEQFIEPT 179

Query: 216 LHHAQIRIN 224
             +A I I 
Sbjct: 180 KKYADIIIP 188

Length = 218

>gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional

 Score = 95.2 bits (238), Expect = 3e-22
 Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 18/184 (9%)

Query: 517 PVIVGIGGPSGSGKTSLAHKMANIVGCE---VVSLESYFKS------EQVKDFKYDDFSS 567
           P+I+GI G SGSGKT++A  +   +G E   V+  +SY+K       E+     YD   +
Sbjct: 6   PIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDA 65

Query: 568 LDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIR 626
            D  LL +++  ++ G+  ++P++D     RS  KE    E   VII EG+  L    +R
Sbjct: 66  FDHDLLIEHLKALKAGKAIEIPVYDYTEHTRS--KETIRVEPKDVIILEGILLLEDERLR 123

Query: 627 KSLDLWIAVVGGVHSHLISRVQRD-KSR---MGCFMSQNDIMMTVFPMFQQHIEPHLVHA 682
             +D+ I V   +   LI R++RD   R   +   ++Q   + TV PM  Q IEP   +A
Sbjct: 124 DLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQ--YLSTVRPMHLQFIEPSKRYA 181

Query: 683 HLKI 686
            + I
Sbjct: 182 DIII 185

Length = 209

>gnl|CDD|232890 TIGR00235, udk, uridine kinase

 Score = 90.1 bits (224), Expect = 2e-20
 Identities = 59/183 (32%), Positives = 96/183 (52%), Gaps = 18/183 (9%)

Query: 518 VIVGIGGPSGSGKTSLAHKMANIVGCE---VVSLESYFKS------EQVKDFKYDDFSSL 568
           +I+GIGG SGSGKT++A K+   +G     ++S ++Y+K        + K   +D   + 
Sbjct: 7   IIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAF 66

Query: 569 DLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-IRK 627
           D  LL +++ +++NG    VP++D     R   KE    E   V+I EG+  L  E +R 
Sbjct: 67  DNDLLYEHLKNLKNGSPIDVPVYDYVNHTRP--KETVHIEPKDVVILEGIMPLFDERLRD 124

Query: 628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIEPHLVHAH 683
            +DL I V   +   LI R++RD +  G   S + ++     TV PM++Q +EP   +A 
Sbjct: 125 LMDLKIFVDTPLDIRLIRRIERDINERG--RSLDSVIDQYRKTVRPMYEQFVEPTKQYAD 182

Query: 684 LKI 686
           L I
Sbjct: 183 LII 185

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]. Length = 207

>gnl|CDD|232890 TIGR00235, udk, uridine kinase

 Score = 86.7 bits (215), Expect = 3e-19
 Identities = 56/181 (30%), Positives = 96/181 (53%), Gaps = 22/181 (12%)

Query: 63  VTVGIGGPSGSGKTSLAEKLASVIGC---TLISMENY-----------RVGVDEGNDLDS 108
           + +GIGG SGSGKT++A K+   +G     +IS +NY           R   +  +  D+
Sbjct: 7   IIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNF-DHPDA 65

Query: 109 IDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRS 167
            D D L ++L++L  G    +P++DY    R   + +      VVI++G   L D RLR 
Sbjct: 66  FDNDLLYEHLKNLKNGSPIDVPVYDYVNHTR-PKETVHIEPKDVVILEGIMPLFDERLRD 124

Query: 168 LLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDLHHAQIR 222
           L+D+++ V   +   LI +++ DI +   SLDS+ID    ++ P++ + +EP   +A + 
Sbjct: 125 LMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQYRKTVRPMYEQFVEPTKQYADLI 184

Query: 223 I 223
           I
Sbjct: 185 I 185

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]. Length = 207

>gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional

 Score = 81.4 bits (202), Expect = 2e-17
 Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 24/180 (13%)

Query: 65  VGIGGPSGSGKTSLAEKLASVIG---CTLISMENY-----RVGVDEGNDL-----DSIDF 111
           +GI G SGSGKT++A  +   +G     +I  ++Y      +  +E         D+ D 
Sbjct: 9   IGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDH 68

Query: 112 DALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRSLLD 170
           D L+++L+ L  GK   IP++DY +  R   + I+     V+I++G   L D RLR L+D
Sbjct: 69  DLLIEHLKALKAGKAIEIPVYDYTEHTRS-KETIRVEPKDVIILEGILLLEDERLRDLMD 127

Query: 171 IRVAVVGGVHFSLISKVQYDI---GDSCSLDSLID----SIFPLFRKHIEPDLHHAQIRI 223
           I++ V   +   LI +++ D+   G   SL+S+I+    ++ P+  + IEP   +A I I
Sbjct: 128 IKIFVDTPLDIRLIRRLKRDVNERGR--SLESVINQYLSTVRPMHLQFIEPSKRYADIII 185

Length = 209

>gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family

 Score = 80.9 bits (200), Expect = 2e-17
 Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 26/191 (13%)

Query: 519 IVGIGGPSGSGKTSLAHKMANIVGCEVV-----------SLESYFKSEQ--------VKD 559
           I+G+ G SG+GKT++A    +I G E V             + ++               
Sbjct: 1   IIGVTGSSGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYDRFYMDLHPEDRKRAGNNH 60

Query: 560 FKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVY 619
           + +    + D  LL +   +++ G     PI++  TG        E+ E   ++ +EG++
Sbjct: 61  YSFFSPEANDFDLLYEQFKELKEGGSGDKPIYNHVTGEADPTWP-ELIEGADILFYEGLH 119

Query: 620 ALHPE-IRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVF---PMFQQHI 675
            L+ E + + LDL I V   ++   I ++QRD +  G   S   +  ++    P +  +I
Sbjct: 120 GLYDERVAQLLDLKIGVDPDINLEWIQKIQRDMAERG--HSLEAVTDSILRRKPDYVNYI 177

Query: 676 EPHLVHAHLKI 686
            P   +  L  
Sbjct: 178 CPQFSYTDLNF 188

In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain. Length = 197

>gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2

 Score = 79.5 bits (197), Expect = 7e-17
 Identities = 58/181 (32%), Positives = 96/181 (53%), Gaps = 26/181 (14%)

Query: 65  VGIGGPSGSGKTSLAEKLASVIG---CTLISMEN-YRVGVDE------GNDLD---SIDF 111
           +GI G SGSGKT++AE++   +G     +IS ++ Y+    E       N+ D   + DF
Sbjct: 2   IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDF 61

Query: 112 DALVQNLQDLTEGKDTLIPMFDYQQKNR-IGSKVIKGASSGVVIVDGTYAL-DARLRSLL 169
           D L+ +LQDL  GK   IP++D++  +R   +  +  A   V+I++G  AL D  LR L+
Sbjct: 62  DLLISHLQDLKNGKSVEIPVYDFKTHSRLKETVTVYPAD--VIILEGILALYDKELRDLM 119

Query: 170 DIRVAVVGGVHFSLISKVQYDI---GDSCSLDSLIDSIF----PLFRKHIEPDLHHAQIR 222
           D+++ V       LI +++ DI   G    L+S+I+       P+  + IEP   +A + 
Sbjct: 120 DLKIFVDTDADVRLIRRIERDIVERGR--DLESVINQYLKFVKPMHEQFIEPTKRYADVI 177

Query: 223 I 223
           I
Sbjct: 178 I 178

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. Length = 198

>gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family

 Score = 67.8 bits (166), Expect = 8e-13
 Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 28/187 (14%)

Query: 65  VGIGGPSGSGKTSLAEKLASVIG--------CTLISM-------------ENYRVGVDEG 103
           +G+ G SG+GKT++A    S+ G            S              +  R G +  
Sbjct: 2   IGVTGSSGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYDRFYMDLHPEDRKRAGNNHY 61

Query: 104 NDLD--SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL 161
           +     + DFD L +  ++L EG     P++++       +       + ++  +G + L
Sbjct: 62  SFFSPEANDFDLLYEQFKELKEGGSGDKPIYNHVTGEADPTWPELIEGADILFYEGLHGL 121

Query: 162 -DARLRSLLDIRVAVVGGVHFSLISKVQYDIGD-SCSLDSLIDSIF---PLFRKHIEPDL 216
            D R+  LLD+++ V   ++   I K+Q D+ +   SL+++ DSI    P +  +I P  
Sbjct: 122 YDERVAQLLDLKIGVDPDINLEWIQKIQRDMAERGHSLEAVTDSILRRKPDYVNYICPQF 181

Query: 217 HHAQIRI 223
            +  +  
Sbjct: 182 SYTDLNF 188

In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain. Length = 197

>gnl|CDD|180660 PRK06696, PRK06696, uridine kinase; Validated

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 30/151 (19%)

Query: 48  LVKSIQE--LREKKGGIVTVGIGGPSGSGKTSLAEKLASVI---GCTLISMENYRVGVD- 101
           L+K + E  L       + V I G + SGKT+ A++LA  I   G  +I     R  +D 
Sbjct: 6   LIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVI-----RASIDD 60

Query: 102 ----------------EGNDLDSIDFDALVQNLQD-LTEGKDTL--IPMFDYQQKNRIGS 142
                           EG   D+ D+ AL + L D L    D        D +    + +
Sbjct: 61  FHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLGPNGDRQYRTASHDLKTDIPVHN 120

Query: 143 KVIKGASSGVVIVDGTYALDARLRSLLDIRV 173
             +  A + V+IVDGT+ L   LR L D ++
Sbjct: 121 PPLLAAPNAVLIVDGTFLLRPELRDLWDYKI 151

Length = 223

>gnl|CDD|140322 PTZ00301, PTZ00301, uridine kinase; Provisional

 Score = 53.9 bits (129), Expect = 5e-08
 Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 26/184 (14%)

Query: 519 IVGIGGPSGSGKTSL---------AHKMANIVG--CEVVSLESYFKSE------QVKDFK 561
           ++GI G SGSGK+SL         AH     +G  CE    + Y++ +      +     
Sbjct: 5   VIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICE----DFYYRDQSNIPESERAYTN 60

Query: 562 YDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL 621
           YD   SL+  LL+ ++ ++++G+  ++P +D     RS            V+I EG+   
Sbjct: 61  YDHPKSLEHDLLTTHLRELKSGKTVQIPQYDYVHHTRSD--TAVTMTPKSVLIVEGILLF 118

Query: 622 -HPEIRKSLDLWIAVVGGVHSHLISRVQRD-KSRMGCFMSQ-NDIMMTVFPMFQQHIEPH 678
            + E+R  +D  I V   +   LI R +RD + R   F S       TV PM+  ++EP 
Sbjct: 119 TNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIEQYEATVRPMYYAYVEPS 178

Query: 679 LVHA 682
            V+A
Sbjct: 179 KVYA 182

Length = 210

>gnl|CDD|238982 cd02024, NRK1, Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 519 IVGIGGPSGSGKTSLAHKMANIVG-CEVVSLESYFKSE-----QVKDFK-YDDFSSLDLS 571
           IVGI G + SGKT+LA  +  I+  C V+  + +FK E         FK +D   +LD+ 
Sbjct: 1   IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDME 60

Query: 572 LLSKNISDIR 581
            +   +   R
Sbjct: 61  AMMSTLDYWR 70

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside. Length = 187

>gnl|CDD|238984 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 14/121 (11%)

Query: 65  VGIGGPSGSGKTSLAEKLASVIG---CTLISMENY----RVGVDEGN----DLDSIDFDA 113
           +G+ G SG GK++   +L S+ G    T+I +++Y    R G  E      D  + +FD 
Sbjct: 2   IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDL 61

Query: 114 LVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRSLLDIR 172
           + + L+ L EG+    P++++        ++IK   + +V+++G + L D R+R LLD  
Sbjct: 62  MYEQLKALKEGQAIEKPIYNHVTGLIDPPELIK--PTKIVVIEGLHPLYDERVRELLDFS 119

Query: 173 V 173
           V
Sbjct: 120 V 120

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. Length = 273

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNIS 578
           I+ I GP GSGK++LA K+A  +G  V+SL+   + E + +    +   +D+ L  + + 
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEGLAELDDGELDDIDIDL--ELLE 58

Query: 579 DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIF 615
           +I +    +  + D   G R    EL + E   V+  
Sbjct: 59  EILDELAKQEWVID---GVRESTLELRLEEADLVVFL 92

Length = 114

>gnl|CDD|235825 PRK06547, PRK06547, hypothetical protein; Provisional

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 18/123 (14%)

Query: 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLD--LSLLS 574
            + V I G SGSGKT+LA  +A   G ++V L+         D  Y  +  L      ++
Sbjct: 15  MITVLIDGRSGSGKTTLAGALAARTGFQLVHLD---------DL-YPGWHGLAAASEHVA 64

Query: 575 KNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIA 634
           + + D     R +   +D        +  +E       +I EGV +L         L   
Sbjct: 65  EAVLDEGRPGRWR---WDWANNRPGDWVSVEPGRR---LIIEGVGSLTAANVALASLLGE 118

Query: 635 VVG 637
           V+ 
Sbjct: 119 VLT 121

Length = 172

>gnl|CDD|238984 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 40/185 (21%), Positives = 91/185 (49%), Gaps = 26/185 (14%)

Query: 519 IVGIGGPSGSGKTSLAHKMANIVGCE---VVSLESYF----KSEQVKDFKYDDFSSLDLS 571
           I+G+ G SG GK++   ++ ++ G +   V+ L+ Y     K  +       D  + +  
Sbjct: 1   IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFD 60

Query: 572 LLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-IRKSLD 630
           L+ + +  ++ G+  + PI++  TG        E+ +   +++ EG++ L+ E +R+ LD
Sbjct: 61  LMYEQLKALKEGQAIEKPIYNHVTGL---IDPPELIKPTKIVVIEGLHPLYDERVRELLD 117

Query: 631 --LWIAVVGGVHSHLIS---RVQRDKSRMGCFMSQNDIMMTVF---PMFQQHIEPHLVHA 682
             +++ +     S  +    ++QRD +  G   S  D++ ++    P F+ +I+P   +A
Sbjct: 118 FSVYLDI-----SDEVKFAWKIQRDMAERG--HSLEDVLASIEARKPDFEAYIDPQKQYA 170

Query: 683 HLKIR 687
            + I+
Sbjct: 171 DVVIQ 175

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. Length = 273

>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 21/144 (14%)

Query: 48  LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLA------SVIGCTLISME--NYRVG 99
           L++ +  L+ +      VGI GP G+GK++LAE L         +    + M+  +    
Sbjct: 19  LLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNA 78

Query: 100 VDEGNDL-------DSIDFDALVQNLQDLTEGKDT-LIPMFDYQQKNRIGSKVIKGASSG 151
           V + + L       ++ D   L   L+ L  G D    P+FD   ++ +   ++   ++ 
Sbjct: 79  VLDAHGLRPRKGAPETFDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTAR 138

Query: 152 VVIVDGTY-ALD----ARLRSLLD 170
           +VIV+G Y  LD     RL  L D
Sbjct: 139 LVIVEGNYLLLDEEPWRRLAGLFD 162

Length = 229

>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 42/193 (21%), Positives = 88/193 (45%), Gaps = 38/193 (19%)

Query: 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLD------- 569
           PV++G+ G SG GKT+    +A+++G E+V++              DD+ S D       
Sbjct: 8   PVLLGVAGDSGCGKTTFLRGLADLLGEELVTV-----------ICTDDYHSYDRKQRKEL 56

Query: 570 -----------LSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGV 618
                      L ++ +++  ++ G+    PI++ ETG    F   E  E   +++ EG+
Sbjct: 57  GITALDPRANNLDIMYEHLKALKTGQPILKPIYNHETGT---FDPPEYIEPNKIVVVEGL 113

Query: 619 YALHPE-IRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVF---PMFQQH 674
           + L+ E +R+  D  + +       +  +++RD ++ G   +   ++  +    P F+ +
Sbjct: 114 HPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRG--HTYEQVLAEIEAREPDFEAY 171

Query: 675 IEPHLVHAHLKIR 687
           I P    A + I+
Sbjct: 172 IRPQRQWADVVIQ 184

Length = 327

>gnl|CDD|215198 PLN02348, PLN02348, phosphoribulokinase

 Score = 46.4 bits (110), Expect = 5e-05
 Identities = 53/236 (22%), Positives = 102/236 (43%), Gaps = 39/236 (16%)

Query: 23  STSSSSPSILQSLPVHASFDHGYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKL 82
           ++ +++ SI      +            S+        G V +G+   SG GK++   +L
Sbjct: 10  ASLNATSSITTPTKSNLGSRRSKSPAASSVVVALAADDGTVVIGLAADSGCGKSTFMRRL 69

Query: 83  ASVIG--------------------CTLISMENY----RVGVDEGN----DLDSIDFDAL 114
            SV G                     T+I +++Y    R G  E      D  + +FD +
Sbjct: 70  TSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLM 129

Query: 115 VQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRSLLD--I 171
            + ++ L EGK    P++++        ++I+     +++++G + + D R+R LLD  I
Sbjct: 130 YEQVKALKEGKAVEKPIYNHVTGLLDPPELIE--PPKILVIEGLHPMYDERVRDLLDFSI 187

Query: 172 RVAVVGGVHFSLISKVQYDIGDSC-SLDSLIDSIF---PLFRKHIEPDLHHAQIRI 223
            + +   V F+   K+Q D+ +   SL+S+  SI    P F  +I+P   +A + I
Sbjct: 188 YLDISDDVKFAW--KIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVI 241

Length = 395

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 65  VGIGGPSGSGKTSLAEKLASVIGCTLISM------ENYRVGVDEGNDLDSIDFDALVQNL 118
           + I GP GSGK++LA+KLA  +G  +IS+      E      D   D   ID + L + L
Sbjct: 2   ILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEGLAELDDGELDDIDIDLELLEEIL 61

Query: 119 QDLTE 123
            +L +
Sbjct: 62  DELAK 66

Length = 114

>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 14/124 (11%)

Query: 62  IVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMENY----RVGVDEGN----DLDSID 110
            V +G+ G SG GKT+    LA ++G    T+I  ++Y    R    E      D  + +
Sbjct: 8   PVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANN 67

Query: 111 FDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRSLL 169
            D + ++L+ L  G+  L P+++++       + I+   + +V+V+G + L D R+R L 
Sbjct: 68  LDIMYEHLKALKTGQPILKPIYNHETGTFDPPEYIE--PNKIVVVEGLHPLYDERVRELY 125

Query: 170 DIRV 173
           D +V
Sbjct: 126 DFKV 129

Length = 327

>gnl|CDD|180660 PRK06696, PRK06696, uridine kinase; Validated

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 36/143 (25%), Positives = 55/143 (38%), Gaps = 36/143 (25%)

Query: 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---GCEVV--------------------SLE 549
           N   P+ V I G + SGKT+ A ++A  +   G  V+                    S E
Sbjct: 18  NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAE 77

Query: 550 SYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSED 609
            Y++      + Y     L L  L  N       R+ +    DL+T        L  + +
Sbjct: 78  GYYEDA----YDYTALRRLLLDPLGPNGD-----RQYRTASHDLKTDIPVHNPPLLAAPN 128

Query: 610 CGVIIFEGVYALHPEIRKSLDLW 632
             V+I +G + L PE+R   DLW
Sbjct: 129 -AVLIVDGTFLLRPELR---DLW 147

Length = 223

>gnl|CDD|235825 PRK06547, PRK06547, hypothetical protein; Provisional

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 19/39 (48%), Positives = 26/39 (66%)

Query: 56 REKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94
          R   GG++TV I G SGSGKT+LA  LA+  G  L+ ++
Sbjct: 9  RLCGGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47

Length = 172

>gnl|CDD|224677 COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 37/153 (24%), Positives = 56/153 (36%), Gaps = 41/153 (26%)

Query: 65  VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV----DEGNDLDSIDFDALVQNLQD 120
           +GI G   SGKT+L EKL        +    YRV          DLD             
Sbjct: 5   LGIVGYKNSGKTTLIEKLVR-----KLKARGYRVATVKHAHHDFDLD------------- 46

Query: 121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGV-VIVDGTYALD-----ARLRSLLDIRVA 174
              GKDT           + G+  +  AS     ++  T   D     +RL  LLD+   
Sbjct: 47  -KPGKDT-YRHR------KAGADQVVVASDHRTALMTRTPDRDLDAVLSRLDPLLDL--V 96

Query: 175 VVGGVHFSLISKV---QYDIGDSCSLDSLIDSI 204
           +V G     + K+   + + GD   +D +  ++
Sbjct: 97  LVEGFKEEPLPKIVLGRDEEGDREPVDVIDPAV 129

Length = 161

>gnl|CDD|238982 cd02024, NRK1, Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 27/135 (20%)

Query: 65  VGIGGPSGSGKTSLAEKLASVIG-CTLISMENY-----RVGVDEGN-----DLDSIDFDA 113
           VGI G + SGKT+LA+ L  ++  C +I  +++      + VDE        L+++D +A
Sbjct: 2   VGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEA 61

Query: 114 LVQNLQ-----------DLTEGKDTLIPMFDYQQK--NRIGSKVIKGASSGVVIVDG--T 158
           ++  L              + G +        +        + ++      ++IVDG   
Sbjct: 62  MMSTLDYWRETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLL 121

Query: 159 YALDARLRSLLDIRV 173
           Y     L  L DIR 
Sbjct: 122 YNYKP-LVDLFDIRY 135

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside. Length = 187

>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

 Score = 42.4 bits (101), Expect = 6e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)

Query: 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES 550
            VIV I GP+ SGKT+LA ++A  +  E++S +S
Sbjct: 5   KVIV-IVGPTASGKTALAIELAKRLNGEIISADS 37

Length = 307

>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional

 Score = 40.9 bits (97), Expect = 7e-04
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 67 IGGPSGSGKTSLAEKLASVIGCTLIS 92
          I GP GSGKT++A  LA  +G   +S
Sbjct: 5  ISGPPGSGKTTVARLLAEKLGLKHVS 30

Length = 180

>gnl|CDD|223455 COG0378, HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

 Score = 41.4 bits (98), Expect = 7e-04
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 50  KSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSI 109
                L EK   ++ +G+GGP GSGKT+L EK    +       + Y++ V  G+     
Sbjct: 1   SKNDRLAEKNRPMLRIGVGGPPGSGKTALIEKTLRALK------DEYKIAVITGDIYTKE 54

Query: 110 DFDALVQNLQDLTEGKDT 127
           D D L +   +   G +T
Sbjct: 55  DADRLRKLPGEPIIGVET 72

Length = 202

>gnl|CDD|222000 pfam13238, AAA_18, AAA domain

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 14/96 (14%)

Query: 65  VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEG 124
           + I G  GSGKT+LA++LA  +G  L  +        E   +  +D        +++T+ 
Sbjct: 1   ILITGTPGSGKTTLAKELAERLGDVLRDL------AKENGLVLELD--------EEITDE 46

Query: 125 KDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYA 160
              L      +  +++   + + A    VI+DG  A
Sbjct: 47  SKRLDEDKLAKLLDKLEKIIEELAEGENVIIDGHLA 82

Length = 128

>gnl|CDD|239390 cd03116, MobB, Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 25/68 (36%)

Query: 65  VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSI-----DFDALVQNLQ 119
           +G  G SGSGKT+L EKL        +S    RV V        I     DFD       
Sbjct: 4   IGFVGYSGSGKTTLLEKLIP-----ALSARGLRVAV--------IKHDHHDFDI------ 44

Query: 120 DLTEGKDT 127
             T GKD+
Sbjct: 45  -DTPGKDS 51

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin. Length = 159

>gnl|CDD|223401 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 1/34 (2%)

Query: 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES 550
            +IV I GP+ SGKT+LA  +A  +G E++SL+S
Sbjct: 4   KLIV-IAGPTASGKTALAIALAKRLGGEIISLDS 36

Length = 308

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	818
PLN02318	656	phosphoribulokinase/uridine kinase	100.0
PLN02318	656	phosphoribulokinase/uridine kinase	100.0
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	100.0
COG1437	178	CyaB Adenylate cyclase, class 2 (thermophilic) [Nu	99.97
KOG2878	282	consensus Predicted kinase [General function predi	99.97
PTZ00301	210	uridine kinase; Provisional	99.97
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	99.96
PLN03046	460	D-glycerate 3-kinase; Provisional	99.96
PLN02348	395	phosphoribulokinase	99.96
PLN02796	347	D-glycerate 3-kinase	99.96
PRK05439	311	pantothenate kinase; Provisional	99.95
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	99.95
TIGR00318	174	cyaB adenylyl cyclase CyaB, putative. The protein	99.94
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	99.94
COG4240	300	Predicted kinase [General function prediction only	99.93
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	99.93
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	99.93
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	99.93
PRK15453	290	phosphoribulokinase; Provisional	99.92
PTZ00301	210	uridine kinase; Provisional	99.92
PRK05480	209	uridine/cytidine kinase; Provisional	99.92
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	99.91
PRK05439	311	pantothenate kinase; Provisional	99.91
PRK07429	327	phosphoribulokinase; Provisional	99.9
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	99.89
TIGR00235	207	udk uridine kinase. Model contains a number of lon	99.89
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	99.89
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	99.88
PLN02348	395	phosphoribulokinase	99.88
PRK06696	223	uridine kinase; Validated	99.88
cd07890	169	CYTH-like_AC_IV-like Adenylyl cyclase (AC) class I	99.87
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	99.86
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	99.86
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	99.86
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	99.85
PRK05480	209	uridine/cytidine kinase; Provisional	99.84
PRK07667	193	uridine kinase; Provisional	99.84
PRK15453	290	phosphoribulokinase; Provisional	99.83
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	99.82
PRK06696	223	uridine kinase; Validated	99.82
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	99.82
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	99.81
TIGR00235	207	udk uridine kinase. Model contains a number of lon	99.8
PRK07667	193	uridine kinase; Provisional	99.79
PRK07429	327	phosphoribulokinase; Provisional	99.79
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	99.79
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	99.77
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	99.77
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	99.77
PRK06547	172	hypothetical protein; Provisional	99.76
PRK06547	172	hypothetical protein; Provisional	99.75
KOG4203	473	consensus Armadillo/beta-Catenin/plakoglobin [Sign	99.72
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	99.68
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	99.63
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.62
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.62
PTZ00451	244	dephospho-CoA kinase; Provisional	99.62
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.6
PF01928	185	CYTH: CYTH domain; InterPro: IPR008172 The CYTH do	99.6
cd07762	180	CYTH-like_Pase_1 Uncharacterized subgroup 1 of the	99.59
cd07758	196	ThTPase Thiamine Triphosphatase. ThTPase is a solu	99.58
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	99.57
PLN02422	232	dephospho-CoA kinase	99.56
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.56
PRK08233	182	hypothetical protein; Provisional	99.53
KOG3308	225	consensus Uncharacterized protein of the uridine k	99.52
PRK14731	208	coaE dephospho-CoA kinase; Provisional	99.52
PRK14732	196	coaE dephospho-CoA kinase; Provisional	99.51
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	99.51
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	99.51
KOG2702	323	consensus Predicted panthothenate kinase/uridine k	99.5
PRK08233	182	hypothetical protein; Provisional	99.49
KOG3308	225	consensus Uncharacterized protein of the uridine k	99.48
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	99.45
PLN03046	460	D-glycerate 3-kinase; Provisional	99.43
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	99.41
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	99.4
PLN02796	347	D-glycerate 3-kinase	99.37
KOG2702	323	consensus Predicted panthothenate kinase/uridine k	99.36
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.36
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.35
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.33
KOG4203	473	consensus Armadillo/beta-Catenin/plakoglobin [Sign	99.3
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.29
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.28
PLN02422	232	dephospho-CoA kinase	99.24
PRK14732	196	coaE dephospho-CoA kinase; Provisional	99.22
PTZ00451	244	dephospho-CoA kinase; Provisional	99.22
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	99.17
PRK01184	184	hypothetical protein; Provisional	99.15
PRK14731	208	coaE dephospho-CoA kinase; Provisional	99.15
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	99.14
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.14
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	99.14
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	99.11
COG4240	300	Predicted kinase [General function prediction only	99.09
PRK06217	183	hypothetical protein; Validated	99.08
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	99.08
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.07
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.04
PRK04182	180	cytidylate kinase; Provisional	99.04
PRK06217	183	hypothetical protein; Validated	99.03
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.03
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	99.02
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	99.02
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	99.0
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.97
PRK08118	167	topology modulation protein; Reviewed	98.97
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	98.96
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	98.95
PRK06762	166	hypothetical protein; Provisional	98.93
cd07756	197	CYTH-like_Pase_CHAD Uncharacterized subgroup of th	98.93
PRK07261	171	topology modulation protein; Provisional	98.91
PRK00023	225	cmk cytidylate kinase; Provisional	98.9
PRK08118	167	topology modulation protein; Reviewed	98.89
PRK07261	171	topology modulation protein; Provisional	98.88
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.87
cd07891	148	CYTH-like_CthTTM-like_1 CYTH-like Clostridium ther	98.86
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	98.83
PRK08356	195	hypothetical protein; Provisional	98.82
KOG2878	282	consensus Predicted kinase [General function predi	98.78
cd07374	174	CYTH-like_Pase CYTH-like (also known as triphospha	98.77
PRK01184	184	hypothetical protein; Provisional	98.77
PRK13949	169	shikimate kinase; Provisional	98.76
PRK00131	175	aroK shikimate kinase; Reviewed	98.74
PLN02200	234	adenylate kinase family protein	98.73
PRK04182	180	cytidylate kinase; Provisional	98.72
PRK00023	225	cmk cytidylate kinase; Provisional	98.72
PRK03839	180	putative kinase; Provisional	98.69
PRK00625	173	shikimate kinase; Provisional	98.69
PRK05541	176	adenylylsulfate kinase; Provisional	98.68
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	98.65
cd07761	146	CYTH-like_CthTTM-like Clostridium thermocellum (Ct	98.64
PRK06762	166	hypothetical protein; Provisional	98.63
COG3954	289	PrkB Phosphoribulokinase [Energy production and co	98.63
PRK04040	188	adenylate kinase; Provisional	98.61
PRK05057	172	aroK shikimate kinase I; Reviewed	98.59
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	98.58
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.56
PRK00131	175	aroK shikimate kinase; Reviewed	98.54
PRK14737	186	gmk guanylate kinase; Provisional	98.53
PRK08356	195	hypothetical protein; Provisional	98.52
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	98.52
PRK14528	186	adenylate kinase; Provisional	98.5
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.5
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	98.5
PRK04040	188	adenylate kinase; Provisional	98.5
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	98.5
PRK14527	191	adenylate kinase; Provisional	98.49
PRK03839	180	putative kinase; Provisional	98.48
PRK13946	184	shikimate kinase; Provisional	98.47
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.47
PLN02200	234	adenylate kinase family protein	98.47
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	98.46
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	98.46
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	98.45
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.43
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	98.43
PRK03731	171	aroL shikimate kinase II; Reviewed	98.42
PRK14531	183	adenylate kinase; Provisional	98.42
PRK13947	171	shikimate kinase; Provisional	98.41
PRK02496	184	adk adenylate kinase; Provisional	98.41
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	98.4
PRK00625	173	shikimate kinase; Provisional	98.4
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.4
PRK14530	215	adenylate kinase; Provisional	98.39
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	98.37
PRK13948	182	shikimate kinase; Provisional	98.37
PRK05541	176	adenylylsulfate kinase; Provisional	98.37
PRK14532	188	adenylate kinase; Provisional	98.37
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.34
PRK00279	215	adk adenylate kinase; Reviewed	98.34
PRK13949	169	shikimate kinase; Provisional	98.33
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	98.32
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.32
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.3
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	98.29
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	98.28
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.28
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	98.28
PRK03846	198	adenylylsulfate kinase; Provisional	98.27
PRK14527	191	adenylate kinase; Provisional	98.27
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	98.27
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.26
PLN02199	303	shikimate kinase	98.26
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	98.25
PTZ00088	229	adenylate kinase 1; Provisional	98.24
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.24
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.24
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	98.22
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	98.21
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	98.21
PRK13808	333	adenylate kinase; Provisional	98.2
PRK14737	186	gmk guanylate kinase; Provisional	98.19
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	98.19
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	98.18
PRK14528	186	adenylate kinase; Provisional	98.17
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.17
PHA02530	300	pseT polynucleotide kinase; Provisional	98.17
PLN02165	334	adenylate isopentenyltransferase	98.17
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	98.15
PRK00889	175	adenylylsulfate kinase; Provisional	98.14
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	98.13
PRK13946	184	shikimate kinase; Provisional	98.12
PRK03731	171	aroL shikimate kinase II; Reviewed	98.12
PRK14530	215	adenylate kinase; Provisional	98.12
PLN02674	244	adenylate kinase	98.12
PRK14531	183	adenylate kinase; Provisional	98.1
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	98.09
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	98.09
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	98.09
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	98.07
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	98.07
PRK12338	319	hypothetical protein; Provisional	98.06
PRK05057	172	aroK shikimate kinase I; Reviewed	98.06
PRK14532	188	adenylate kinase; Provisional	98.05
PRK12338	319	hypothetical protein; Provisional	98.05
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	98.05
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	98.04
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	98.04
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.02
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	98.02
PRK02496	184	adk adenylate kinase; Provisional	98.01
PTZ00088	229	adenylate kinase 1; Provisional	98.0
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	97.99
PRK00279	215	adk adenylate kinase; Reviewed	97.99
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	97.97
PLN02840	421	tRNA dimethylallyltransferase	97.95
PRK12339	197	2-phosphoglycerate kinase; Provisional	97.94
PLN02748	468	tRNA dimethylallyltransferase	97.94
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	97.94
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.94
PRK00300	205	gmk guanylate kinase; Provisional	97.93
COG3954	289	PrkB Phosphoribulokinase [Energy production and co	97.93
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	97.92
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	97.92
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	97.92
PRK14526	211	adenylate kinase; Provisional	97.92
PRK13948	182	shikimate kinase; Provisional	97.91
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	97.9
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	97.9
PRK13975	196	thymidylate kinase; Provisional	97.86
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	97.84
PRK13808	333	adenylate kinase; Provisional	97.83
PLN02674	244	adenylate kinase	97.82
PLN02459	261	probable adenylate kinase	97.8
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	97.8
PRK13947	171	shikimate kinase; Provisional	97.8
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.8
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	97.79
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	97.78
PRK04220	301	2-phosphoglycerate kinase; Provisional	97.78
PRK12339	197	2-phosphoglycerate kinase; Provisional	97.78
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	97.77
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	97.77
PRK14529	223	adenylate kinase; Provisional	97.76
PRK09825	176	idnK D-gluconate kinase; Provisional	97.74
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	97.73
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	97.73
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.72
PRK03846	198	adenylylsulfate kinase; Provisional	97.72
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	97.72
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.72
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	97.71
PRK00698	205	tmk thymidylate kinase; Validated	97.7
PLN02842	505	nucleotide kinase	97.68
PRK00300	205	gmk guanylate kinase; Provisional	97.68
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.67
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.65
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	97.64
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.64
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.63
PHA02530	300	pseT polynucleotide kinase; Provisional	97.61
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	97.61
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	97.61
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	97.61
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	97.6
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	97.6
PRK11545	163	gntK gluconate kinase 1; Provisional	97.6
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.6
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	97.59
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	97.58
PRK09825	176	idnK D-gluconate kinase; Provisional	97.56
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	97.55
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	97.55
PLN02459	261	probable adenylate kinase	97.55
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	97.55
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	97.54
COG0645	170	Predicted kinase [General function prediction only	97.5
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	97.5
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	97.49
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	97.49
PHA00729	226	NTP-binding motif containing protein	97.49
PHA00729	226	NTP-binding motif containing protein	97.48
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.48
PRK14738	206	gmk guanylate kinase; Provisional	97.47
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	97.46
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.44
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	97.44
PRK14526	211	adenylate kinase; Provisional	97.44
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.44
PRK14529	223	adenylate kinase; Provisional	97.44
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	97.41
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	97.41
PRK12337	475	2-phosphoglycerate kinase; Provisional	97.4
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	97.37
PRK13975	196	thymidylate kinase; Provisional	97.36
PRK04220	301	2-phosphoglycerate kinase; Provisional	97.35
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	97.34
PLN02199	303	shikimate kinase	97.34
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	97.32
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	97.3
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	97.3
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.3
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	97.28
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	97.26
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	97.23
PRK00889	175	adenylylsulfate kinase; Provisional	97.22
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	97.22
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	97.17
COG4639	168	Predicted kinase [General function prediction only	97.17
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	97.14
PLN02842	505	nucleotide kinase	97.12
PRK11545	163	gntK gluconate kinase 1; Provisional	97.09
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	97.08
PRK13973	213	thymidylate kinase; Provisional	97.06
PRK14738	206	gmk guanylate kinase; Provisional	97.05
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.03
PLN02840	421	tRNA dimethylallyltransferase	97.02
PLN02165	334	adenylate isopentenyltransferase	97.01
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	97.01
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	96.93
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.91
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	96.91
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.9
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	96.87
PRK13973	213	thymidylate kinase; Provisional	96.84
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.82
COG4639	168	Predicted kinase [General function prediction only	96.8
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	96.79
PF00004	132	AAA: ATPase family associated with various cellula	96.79
PLN02748	468	tRNA dimethylallyltransferase	96.77
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.75
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	96.72
PF00004	132	AAA: ATPase family associated with various cellula	96.67
COG3025	432	Uncharacterized conserved protein [Function unknow	96.66
TIGR00318	174	cyaB adenylyl cyclase CyaB, putative. The protein	96.65
PRK07933	213	thymidylate kinase; Validated	96.63
PLN02772	398	guanylate kinase	96.63
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	96.58
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.57
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	96.57
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	96.52
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	96.5
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.45
PLN02924	220	thymidylate kinase	96.45
COG1660	286	Predicted P-loop-containing kinase [General functi	96.45
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.44
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.43
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.43
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.4
COG3709	192	Uncharacterized component of phosphonate metabolis	96.36
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.36
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	96.34
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	96.32
PRK07933	213	thymidylate kinase; Validated	96.3
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	96.29
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	96.28
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.28
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	96.23
PRK12337	475	2-phosphoglycerate kinase; Provisional	96.16
PHA03132	580	thymidine kinase; Provisional	96.15
PRK13976	209	thymidylate kinase; Provisional	96.15
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.11
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.11
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.09
COG2954	156	Uncharacterized protein conserved in bacteria [Fun	96.06
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.05
PRK13974	212	thymidylate kinase; Provisional	95.99
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	95.99
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	95.97
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	95.95
PRK06761	282	hypothetical protein; Provisional	95.94
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	95.92
PRK10646	153	ADP-binding protein; Provisional	95.9
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	95.9
smart00382	148	AAA ATPases associated with a variety of cellular	95.88
PRK06761	282	hypothetical protein; Provisional	95.88
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	95.86
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	95.85
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	95.85
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	95.84
TIGR00101	199	ureG urease accessory protein UreG. This model rep	95.83
smart00382	148	AAA ATPases associated with a variety of cellular	95.82
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	95.82
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	95.8
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	95.8
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	95.79
PRK08099	399	bifunctional DNA-binding transcriptional repressor	95.78
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	95.76
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	95.76
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	95.75
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	95.74
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	95.7
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	95.69
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	95.69
COG1660	286	Predicted P-loop-containing kinase [General functi	95.69
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	95.68
TIGR00064	272	ftsY signal recognition particle-docking protein F	95.66
PRK08903	227	DnaA regulatory inactivator Hda; Validated	95.66
PF13555	62	AAA_29: P-loop containing region of AAA domain	95.65
PRK00698	205	tmk thymidylate kinase; Validated	95.64
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	95.63
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	95.63
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	95.61
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	95.59
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	95.57
PF13555	62	AAA_29: P-loop containing region of AAA domain	95.56
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	95.55
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	95.55
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	95.54
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	95.48
TIGR00101	199	ureG urease accessory protein UreG. This model rep	95.48
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	95.47
COG0802	149	Predicted ATPase or kinase [General function predi	95.47
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	95.47
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	95.46
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	95.45
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	95.43
TIGR00064	272	ftsY signal recognition particle-docking protein F	95.43
PRK10416	318	signal recognition particle-docking protein FtsY;	95.43
PRK10416	318	signal recognition particle-docking protein FtsY;	95.43
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	95.41
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	95.4
cd03115	173	SRP The signal recognition particle (SRP) mediates	95.39
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	95.38
PRK14974	336	cell division protein FtsY; Provisional	95.35
PRK09087	226	hypothetical protein; Validated	95.34
PRK14974	336	cell division protein FtsY; Provisional	95.34
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	95.33
PRK10646	153	ADP-binding protein; Provisional	95.32
cd03116	159	MobB Molybdenum is an essential trace element in t	95.31
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	95.31
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	95.31
PRK08099	399	bifunctional DNA-binding transcriptional repressor	95.31
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	95.3
KOG3062	281	consensus RNA polymerase II elongator associated p	95.26
COG0645	170	Predicted kinase [General function prediction only	95.24
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	95.23
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	95.22
KOG4235	244	consensus Mitochondrial thymidine kinase 2/deoxygu	95.22
cd03115	173	SRP The signal recognition particle (SRP) mediates	95.2
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	95.2
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	95.16
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	95.15
CHL00195	489	ycf46 Ycf46; Provisional	95.14
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	95.13
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	95.11
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	95.09
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	95.08
PRK10867	433	signal recognition particle protein; Provisional	95.06
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	95.05
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	95.04
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	95.04
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	95.04
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	95.03
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	95.03
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	95.02
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	95.02
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	95.01
PF13173	128	AAA_14: AAA domain	95.0
TIGR00959	428	ffh signal recognition particle protein. This mode	94.98
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	94.97
PRK13768	253	GTPase; Provisional	94.96
cd03116	159	MobB Molybdenum is an essential trace element in t	94.94
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	94.93
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	94.92
PF13173	128	AAA_14: AAA domain	94.92
PRK08084	235	DNA replication initiation factor; Provisional	94.91
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	94.91
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	94.88
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	94.86
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	94.84
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	94.84
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	94.84
PRK00771	437	signal recognition particle protein Srp54; Provisi	94.82
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	94.82
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	94.79
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	94.79
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	94.79
PRK10867	433	signal recognition particle protein; Provisional	94.78
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	94.77
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	94.76
PRK09087	226	hypothetical protein; Validated	94.75
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	94.75
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	94.75
PF00005	137	ABC_tran: ABC transporter This structure is on hol	94.74
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	94.73
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	94.73
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	94.72

>PLN02318 phosphoribulokinase/uridine kinase

Probab=100.00  E-value=3.4e-62  Score=550.94  Aligned_cols=331  Identities=33%  Similarity=0.627  Sum_probs=308.0

Q ss_pred             ccceecccCCCCcchhhhhHHHHHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh-CCcccccccccchhhhhcc
Q 003460          482 RDTVKLVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQVKDF  560 (818)
Q Consensus       482 ~~~~~~~~~~~~~~~~e~~~~~~~~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~l-g~~vis~Ddfy~~~~~~~~  560 (818)
                      .++++++|+|+.++|++||++++++++.+..+.+++++|||+|||||||||||+.|+..+ ++.+|++|+|+.......+
T Consensus        30 ~~~~~i~~~~~~~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~~i~~  109 (656)
T PLN02318         30 SDRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDG  109 (656)
T ss_pred             CCceEEEeCCCccccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchhhhCc
Confidence            478999999999999999999999999999888889999999999999999999999988 4679999999876544567


Q ss_pred             cCCCcccccHHHHHHHHHHHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChh
Q 003460          561 KYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVH  640 (818)
Q Consensus       561 ~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d  640 (818)
                      +|++|.++|++.+.++|..|++|+.+.+|.||+.++++.+.. .....+.+|||+||+|++++.+++++|++|||+++.+
T Consensus       110 nfD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~-~i~v~p~~VVIVEGIyaL~~~Lr~LlDlkIFVDtdvD  188 (656)
T PLN02318        110 NFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYR-TLEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVH  188 (656)
T ss_pred             cCCChhhcchhHHHHHHHHHhCCCceecCccccccCcccCCc-eeecCCCcEEEEechhhccHhHHhhCCEEEEEcCCcc
Confidence            899999999999999999999999999999999999887432 2335678999999999999999999999999999999


Q ss_pred             HHHHHHHhcCccccCcccch--hhHHHhhcchhhhhccccCCcccEEEeCCCCCccCccchhhhhccccccchhhhhccC
Q 003460          641 SHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKIL  718 (818)
Q Consensus       641 ~rl~Rri~Rd~~~rg~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~l~~~k~~~~~~~~~~~~~m  718 (818)
                      .++.||+.||..++|++.+.  .+|...++|+|.+||+|++++||++|.|+|+|+...+++.+++++.+++..++|.+.|
T Consensus       189 irL~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~~~~~~~~i~~~L  268 (656)
T PLN02318        189 FDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSSRSVTVEQIKAVL  268 (656)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCCccccHHHHHHHh
Confidence            99999999999999998875  6888899999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhhhccccccceeeecCCCCCCCCCCCCCCeEEEEEeCceeEEEEecccccCCceeccccceEEehhhHHHHHhhhhH
Q 003460          719 DPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQ  798 (818)
Q Consensus       719 ~~~~v~~~v~~y~~~Yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~g~~  798 (818)
                      +.. ....+++|+|+||.+|+.+   +.+|++|||||+|+|||+|||+|||+||||||+|+++|||+|+++||||+|||+
T Consensus       269 ~~~-~~~~~~~~~DiYl~~P~~d---~~~~~e~LRvR~~~Gk~~Ltyke~i~dgp~ii~pk~~fEv~v~~~~gL~aLGy~  344 (656)
T PLN02318        269 SED-HTETTEETYDIYLLPPGED---PETCQSYLRMRNRDGKYSLMFEEWVTDEPFIISPRITFEVSVRLLGGLMALGYT  344 (656)
T ss_pred             hhc-cccccceeeEEEecCCCCC---chhccceEEEEecCCEEEEEEecccccCCeecCcceeEEEeeehHhHHHHcCCc
Confidence            864 7788899999999999965   357899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhheeeecceEEe
Q 003460          799 AVAYIEASAFIYQDGKVRL  817 (818)
Q Consensus       799 ~~~~~~~~~~~~~~~~~~~  817 (818)
                      ++|+++|++++|++|+|+|
T Consensus       345 ~~a~vkk~r~iy~~g~v~i  363 (656)
T PLN02318        345 IATILKRSSHVFSDDKVCV  363 (656)
T ss_pred             eEEEEEEEEEEEecCCEEE
Confidence            9999999999999999987

>PLN02318 phosphoribulokinase/uridine kinase

Probab=100.00  E-value=8.8e-60  Score=531.44  Aligned_cols=366  Identities=32%  Similarity=0.618  Sum_probs=324.3

Q ss_pred             CccccccCCcccccchhhHHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHh-CCeEEeccceeccc----cc
Q 003460           28 SPSILQSLPVHASFDHGYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGV----DE  102 (818)
Q Consensus        28 ~~~~~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~L-g~~vI~~D~~~~~~----~~  102 (818)
                      ....+.+.+..+|||+||++.+++++.+.++.+++++|||+|++||||||||+.|+..+ ++.+|++|+|+...    ..
T Consensus        31 ~~~~i~~~~~~~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~~i~~n  110 (656)
T PLN02318         31 DRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDGN  110 (656)
T ss_pred             CceEEEeCCCccccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchhhhCcc
Confidence            45567778889999999999999999999988889999999999999999999999988 46899999997521    13


Q ss_pred             CCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHH
Q 003460          103 GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFS  182 (818)
Q Consensus       103 ~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~  182 (818)
                      .+.++++|...+.+.|..++.|+.+.+|.||+..+.+........++.++||+||+|++++.+++++|++|||+++.+.+
T Consensus       111 fD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~~Lr~LlDlkIFVDtdvDir  190 (656)
T PLN02318        111 FDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFD  190 (656)
T ss_pred             CCChhhcchhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhccHhHHhhCCEEEEEcCCccHH
Confidence            45678899999999999999999999999999999887655566778899999999999999999999999999999999


Q ss_pred             HHHHHHhccCCC-cCHHHHHH----hhchhhhhccCCccccCcEEEECCCC--CChhhhhhcccCcccCCcccccccc--
Q 003460          183 LISKVQYDIGDS-CSLDSLID----SIFPLFRKHIEPDLHHAQIRINNRFV--SSFREAIYKLKCRSEAPGACSISAF--  253 (818)
Q Consensus       183 l~Rri~Rd~~~~-~s~e~~~~----~~~p~~~~~Iep~~~~ADiII~N~~~--~~~~~~~~~l~~~~~~l~~~~~~~~--  253 (818)
                      +.||+.||...+ .+.+.+++    .+.|+|.+||+|++++||+||+|+|.  .++++|+|++++..++..+++-..+  
T Consensus       191 L~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~~~~~~~~i~~~L~~  270 (656)
T PLN02318        191 LVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSSRSVTVEQIKAVLSE  270 (656)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCCccccHHHHHHHhhh
Confidence            999999998776 46666655    45999999999999999999999885  7999999999998876555533322  


Q ss_pred             --cccc-cccceeeccCCCCCcchhhhccCCeeeEeeeCCEEEEEEcceeecCCCcccCceeEEEEeccHHHHHHhcCCc
Q 003460          254 --QGNE-AQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYS  330 (818)
Q Consensus       254 --~~~~-~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v~~~~~L~~LGf~  330 (818)
                        ..+. .-.|+||+.|++||.++++     |||||+++++++|||| +|+.+++|+|.++.++||+|.+.++|++|||+
T Consensus       271 ~~~~~~~~~~DiYl~~P~~d~~~~~e-----~LRvR~~~Gk~~Ltyk-e~i~dgp~ii~pk~~fEv~v~~~~gL~aLGy~  344 (656)
T PLN02318        271 DHTETTEETYDIYLLPPGEDPETCQS-----YLRMRNRDGKYSLMFE-EWVTDEPFIISPRITFEVSVRLLGGLMALGYT  344 (656)
T ss_pred             ccccccceeeEEEecCCCCCchhccc-----eEEEEecCCEEEEEEe-cccccCCeecCcceeEEEeeehHhHHHHcCCc
Confidence              2222 3359999999999876655     5599999999999999 99999999999999999999999999999999


Q ss_pred             eeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEecCHHHHHHHHHHcCCCCCccchhHHHHH-HhhcC
Q 003460          331 VVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNRKTVGAEALRMGINGPWITKSYLEMV-LEKKG  399 (818)
Q Consensus       331 ~~~~~~K~R~~~~~~~~~i~lD~v~~lg~~fvEiE~~~~~~i~~~~~~Lgl~~~~~~~sYlel~-l~~~~  399 (818)
                      +++.++|.|++|.+|+++|++|+|+|||.+|||||+.+++.|.++|++||++++++++|||||+ +|+.-
T Consensus       345 ~~a~vkk~r~iy~~g~v~i~lD~ve~Lg~~FvqIeg~~r~~V~~~a~kLGl~g~~i~~SYlE~i~~~~~~  414 (656)
T PLN02318        345 IATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQGKDRLVVKDVAEQLGLEGSYIPRTYIEQIQLEKLV  414 (656)
T ss_pred             eEEEEEEEEEEEecCCEEEEeehhhccCCeeEEEehhHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhH
Confidence            9999999999999999999999999999999999999999999999999999999999999999 55553

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=1.9e-34  Score=292.42  Aligned_cols=174  Identities=33%  Similarity=0.537  Sum_probs=159.4

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCC---cccccccccchhh------hhcccCCCcccccHHHHHHHHHHHhcCCc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGC---EVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGRR  585 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~---~vis~Ddfy~~~~------~~~~~~d~p~t~D~~ll~~~L~~L~~g~~  585 (818)
                      .++++|||+|+|||||||+|+.|.+.|+.   .+|++||||+...      ....||++|.++|+++|.++|..|++|++
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~   85 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP   85 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence            45699999999999999999999999984   4999999999733      34568999999999999999999999999


Q ss_pred             eecccccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch--hh
Q 003460          586 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--ND  662 (818)
Q Consensus       586 v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~--~~  662 (818)
                      +..|.||+.+|.|..  ......|.+|||+||+|+++ ..+++++|++|||+++.|.|+.||+.||+.+||++++.  .|
T Consensus        86 v~~P~yd~~~~~r~~--~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~q  163 (218)
T COG0572          86 VDLPVYDYKTHTREP--ETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQ  163 (218)
T ss_pred             ccccccchhcccccC--CccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            999999999999985  33445788999999999998 58999999999999999999999999999999999987  79


Q ss_pred             HHHhhcchhhhhccccCCcccEEEeCCC
Q 003460          663 IMMTVFPMFQQHIEPHLVHAHLKIRNDF  690 (818)
Q Consensus       663 ~~~~v~p~~~~~I~p~~~~ADivI~n~~  690 (818)
                      |.+.++|+|++||+|++++||++|+...
T Consensus       164 y~~~vkp~~~~fIeptk~~ADiiip~~~  191 (218)
T COG0572         164 YVKTVRPMYEQFIEPTKKYADIIIPSGG  191 (218)
T ss_pred             HHHhhChhhhhccCcccccceEEeecCC
Confidence            9999999999999999999999998654

>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]

Probab=99.97  E-value=1.7e-31  Score=260.08  Aligned_cols=142  Identities=24%  Similarity=0.396  Sum_probs=132.2

Q ss_pred             ccccccccccccccceeeccCCCCCcchhhhccCCeeeEe-eeCCEEEEEEcceeecCCCcccCceeEEEEec----cHH
Q 003460          247 ACSISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMR-QSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTL  321 (818)
Q Consensus       247 ~~~~~~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR-~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~  321 (818)
                      ++.++.|.+.+.|+|+||++|||||+.||+|+     ||| ..++++.+|||||+++..+   |+|.|+|+.|    .+.
T Consensus        21 ~~~~~~~~~~e~q~DiYf~~p~rdf~~tdeal-----RiR~~~~~~~~lTYKgp~ld~~~---k~r~E~E~~v~D~~~~~   92 (178)
T COG1437          21 ASLGAKFIKEEEQEDIYFDHPCRDFADTDEAL-----RIRRINGGEVFLTYKGPKLDRES---KTREEIEIEVSDVEKAL   92 (178)
T ss_pred             HhccccccceeeeeeeeeecCCcchhcCccee-----EEEEecCCcEEEEEecccccccc---cceeeEEEEeCCHHHHH
Confidence            34678899999999999999999999999999     999 6688999999999999888   9999999999    999


Q ss_pred             HHHHhcCCceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec--CH-------HHHHHHHHHcCCCC-CccchhHH
Q 003460          322 GGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR-------KTVGAEALRMGING-PWITKSYL  391 (818)
Q Consensus       322 ~~L~~LGf~~~~~~~K~R~~~~~~~~~i~lD~v~~lg~~fvEiE~~--~~-------~~i~~~~~~Lgl~~-~~~~~sYl  391 (818)
                      ++|++|||.++++++|.|++|..++++|+||.|+|||. |+|||.+  +.       +.+.+++++||++. ..+++||+
T Consensus        93 ~il~~LGF~~~~~VkK~R~iY~~~~~~i~lD~VegLG~-F~EIE~~~~d~~e~~~~~~~~~~i~~~lGl~~~~~~r~sYl  171 (178)
T COG1437          93 EILKRLGFKEVAVVKKTREIYKVGNVTIELDAVEGLGD-FLEIEVMVDDENEIDGAKEEIEEIARQLGLKEEDLERRSYL  171 (178)
T ss_pred             HHHHHcCCceeeEEEEEEEEEeeCCEEEEEecccCCcc-cEEEEEecCCchhhHHHHHHHHHHHHHhCCChhcccchhHH
Confidence            99999999999999999999999999999999999999 9999999  22       56899999999985 45999999


Q ss_pred             HHHHhh
Q 003460          392 EMVLEK  397 (818)
Q Consensus       392 el~l~~  397 (818)
                      ||+..+
T Consensus       172 ELl~~~  177 (178)
T COG1437         172 ELLLEK  177 (178)
T ss_pred             HHHhcc
Confidence            999864

>KOG2878 consensus Predicted kinase [General function prediction only]

Probab=99.97  E-value=2e-32  Score=267.51  Aligned_cols=222  Identities=22%  Similarity=0.331  Sum_probs=164.2

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh--------CCcccccccccchhhh----hcc--------cCCCcccccHHHHHH
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV--------GCEVVSLESYFKSEQV----KDF--------KYDDFSSLDLSLLSK  575 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l--------g~~vis~Ddfy~~~~~----~~~--------~~d~p~t~D~~ll~~  575 (818)
                      -|++||++||+||||||++.+|-..+        ....+|.||||++++.    ++.        ..+.+++||+.++.+
T Consensus        30 ~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~npnN~Llq~RGlaGtHD~kll~e  109 (282)
T KOG2878|consen   30 VPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKNPNNALLQYRGLAGTHDLKLLVE  109 (282)
T ss_pred             CcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeeechhHHHHHhhCCCChhhccCCCCCcccHHHHHH
Confidence            49999999999999999999987655        2668999999999652    111        145789999999999


Q ss_pred             HHHHHhcC----Cceecccccccc----cccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHH
Q 003460          576 NISDIRNG----RRTKVPIFDLET----GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRV  647 (818)
Q Consensus       576 ~L~~L~~g----~~v~~P~yD~~~----~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri  647 (818)
                      +|+.+.++    ..+.+|.||++.    |||.+.+.|....|.+++|+|||++++..+.  .|..-.++.         +
T Consensus       110 vLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl~--~~~v~a~d~---------l  178 (282)
T KOG2878|consen  110 VLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPLP--ADVVKAVDP---------L  178 (282)
T ss_pred             HHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccccc--hhheeccCc---------c
Confidence            99998764    469999999995    6888888898888999999999999874331  111000100         0


Q ss_pred             hcCccccCcccchhhHHHhhcchhhhhccccCCcccEEEeCCCCCccCccchhhhhccccccchhhhhccCChhhhhccc
Q 003460          648 QRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSA  727 (818)
Q Consensus       648 ~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~l~~~k~~~~~~~~~~~~~m~~~~v~~~v  727 (818)
                      +-|....+..      .....+.+.++|...-...---|+++|.||+||||+|+.          ++.+|||||||..||
T Consensus       179 ~Gdl~~VN~k------L~~Y~d~~~k~Idslvv~~~q~inyVYrWRLQqEhal~~----------~~~kGMsDEeV~~FV  242 (282)
T KOG2878|consen  179 QGDLEVVNKK------LEAYYDAWDKYIDSLVVIKIQDINYVYRWRLQQEHALRQ----------DGQKGMSDEEVNDFV  242 (282)
T ss_pred             cccHHHHhhH------HHHHHHHHHHhhhhEEEEEecCccHhhhhhHHHHHHHHH----------hhccCCCHHHHHHHH
Confidence            0011111222      223444555565442100001236789999999999873          344799999999999


Q ss_pred             cccceee-ecCCCCCCCCCCCCCCeEEEEEeCceeEEE
Q 003460          728 QNFIDMY-LRLPGIPTNGQLTESDCIRVRICEGRFALL  764 (818)
Q Consensus       728 ~~y~~~Y-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (818)
                      ++|||+| +|++.+.+.+++....||.+-++++||.+.
T Consensus       243 ~rYmP~Yk~YL~tl~~~~~lgs~~~L~i~iDenRyp~~  280 (282)
T KOG2878|consen  243 SRYMPAYKAYLPTLYAEGPLGSDRVLAIDIDENRYPIL  280 (282)
T ss_pred             HhhhhHHHhhhhhhhhcCCCCCCeEEEEeecCCccccc
Confidence            9999999 999999999998889999999999998763

>PTZ00301 uridine kinase; Provisional

Probab=99.97  E-value=3.1e-30  Score=265.47  Aligned_cols=172  Identities=27%  Similarity=0.447  Sum_probs=152.0

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHh----C---Ccccccccccchhh------hhcccCCCcccccHHHHHHHHHHHhcC
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIV----G---CEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNG  583 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~l----g---~~vis~Ddfy~~~~------~~~~~~d~p~t~D~~ll~~~L~~L~~g  583 (818)
                      .++|||+|+|||||||||+.|++.+    +   +.++++|+||++..      .+..+|++|.++|+++|.+.|..|++|
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g   82 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG   82 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence            5899999999999999999998766    2   34889999998732      234689999999999999999999999


Q ss_pred             CceecccccccccccCCCcceeeecCCcEEEEEecccc-hHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch--
Q 003460          584 RRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--  660 (818)
Q Consensus       584 ~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~-~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~--  660 (818)
                      +.+.+|.||+..+++..  ......+.+|||+||+|++ ++.+++++|++|||+++.++++.||+.||..++|++.+.  
T Consensus        83 ~~i~~P~yd~~~~~~~~--~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~  160 (210)
T PTZ00301         83 KTVQIPQYDYVHHTRSD--TAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVI  160 (210)
T ss_pred             CcccCCCcccccCCcCC--ceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHH
Confidence            99999999999998874  2233456799999999998 489999999999999999999999999999999999876  


Q ss_pred             hhHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460          661 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF  690 (818)
Q Consensus       661 ~~~~~~v~p~~~~~I~p~~~~ADivI~n~~  690 (818)
                      .+|...+.|.+.+||+|++.+||+||++.-
T Consensus       161 ~~~~~~v~~~~~~~I~p~k~~ADiIi~~~~  190 (210)
T PTZ00301        161 EQYEATVRPMYYAYVEPSKVYADIIVPSWK  190 (210)
T ss_pred             HHHHHhhcccHHHHcCccccCCcEEEcCCC
Confidence            568888999999999999999999997654

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=99.96  E-value=1.4e-29  Score=258.51  Aligned_cols=170  Identities=31%  Similarity=0.539  Sum_probs=143.3

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhC---------Ccccccccccchhh--------hhcccCCCcccccHHHHHHHHHHHh
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVG---------CEVVSLESYFKSEQ--------VKDFKYDDFSSLDLSLLSKNISDIR  581 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg---------~~vis~Ddfy~~~~--------~~~~~~d~p~t~D~~ll~~~L~~L~  581 (818)
                      ||||+|+|||||||||+.|+..|+         ..++++|+||.+..        ...+++++|.++|++++.+.|..|+
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~   80 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK   80 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence            799999999999999999999996         23678999997622        1245789999999999999999999


Q ss_pred             cCCceecccccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch
Q 003460          582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ  660 (818)
Q Consensus       582 ~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~  660 (818)
                      +|+.+..|.||+.++++.+  ......+.+|||+||+|+++ +.+++++|++||++++.++++.|++.||..+||++.+.
T Consensus        81 ~g~~i~~p~yd~~~~~~~~--~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~  158 (194)
T PF00485_consen   81 NGGSIEIPIYDFSTGDRDP--WIIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEE  158 (194)
T ss_dssp             TTSCEEEEEEETTTTEEEE--EEEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHH
T ss_pred             CCCccccccccccccccee--eeeecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCccee
Confidence            9999999999999998875  23344578999999999987 67999999999999999999999999999999999886


Q ss_pred             -hhHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460          661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF  690 (818)
Q Consensus       661 -~~~~~~v~p~~~~~I~p~~~~ADivI~n~~  690 (818)
                       .+.+..++|.|..||+|++.+||+||++.-
T Consensus       159 ~~~~~~~~~~~~~~~I~p~~~~ADivi~~~~  189 (194)
T PF00485_consen  159 VIAQYERVRPGYERYIEPQKERADIVIPSGP  189 (194)
T ss_dssp             HHHHHHTHHHHHHHCTGGGGGG-SEEEESCT
T ss_pred             EEEEeecCChhhhhheeccccccEEEECCCC
Confidence             233448999999999999999999999763

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=99.96  E-value=1.8e-29  Score=276.34  Aligned_cols=232  Identities=15%  Similarity=0.205  Sum_probs=160.9

Q ss_pred             HHHHHHHHHHHHcC-----CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccchhhh-hc---cc-----
Q 003460          501 LLSVQAIQALLENK-----GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQV-KD---FK-----  561 (818)
Q Consensus       501 ~~~~~~i~~l~~~~-----~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~~~~-~~---~~-----  561 (818)
                      .||.+.+..+....     .+|+||||+|++|||||||++.|...+.     +.+||+||||++.+. ..   .+     
T Consensus       191 ~w~~~~i~~h~~~~~~~~~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~nP~n~L  270 (460)
T PLN03046        191 IWCEDQIAEHRSKFKDGDDIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRERNPGNAL  270 (460)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhhCccchh
Confidence            35555666665432     3799999999999999999999988773     668999999986332 11   11     


Q ss_pred             ---CCCcccccHHHHHHHHHHH----hcCCceeccccccccc----ccCCCccee-eecCCcEEEEEecccch-Hhhhhc
Q 003460          562 ---YDDFSSLDLSLLSKNISDI----RNGRRTKVPIFDLETG----ARSGFKELE-VSEDCGVIIFEGVYALH-PEIRKS  628 (818)
Q Consensus       562 ---~d~p~t~D~~ll~~~L~~L----~~g~~v~~P~yD~~~~----~r~~~~~~~-~~~~~~vvIvEG~~~~~-~~l~~~  628 (818)
                         .+.|++||+.++.++|.++    ++|+.+.+|+|||+.+    ||.+.+.|. +..|.+||||||||+++ |.-.+.
T Consensus       271 L~~RG~PGTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~  350 (460)
T PLN03046        271 LELRGNAGSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEV  350 (460)
T ss_pred             hcccCCCccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHH
Confidence               2468999999999999888    5789999999999984    577655554 45788999999999987 321112


Q ss_pred             CCEEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcchhhhhccccCCcccEEEeCCCCCccCccchhhhhccccc
Q 003460          629 LDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQ  708 (818)
Q Consensus       629 ~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~l~~~k~~~~  708 (818)
                      ++..     +.+.          ...+..+..  |...+...++.+|.-.  --|  ++++|.||++||+.|+..++.  
T Consensus       351 l~~~-----D~~l----------~~VN~~L~~--Y~~~w~~~~D~li~L~--a~d--~~~Vy~WRlqQE~kLr~~gg~--  407 (460)
T PLN03046        351 VKAV-----DPQL----------EVVNKNLEA--YYDAWDKFIDAWVVIK--IQD--PSCVYQWRLQAEIAMRADGKP--  407 (460)
T ss_pred             hhcc-----ChhH----------HHHHHHHHH--HHHHHHHhhceeEEee--CCC--hhHHHHHHHHHHHHHHHcCCC--
Confidence            2211     1111          111222222  2211111122222110  001  246799999999999966543  


Q ss_pred             cchhhhhccCChhhhhccccccceee-ecCCCCCCCCCC--CCCCeEEEEEeCceeEE
Q 003460          709 VAYQDILKILDPAKFCSSAQNFIDMY-LRLPGIPTNGQL--TESDCIRVRICEGRFAL  763 (818)
Q Consensus       709 ~~~~~~~~~m~~~~v~~~v~~y~~~Y-l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  763 (818)
                              ||+++||.+||++|||+| +|+|++..+|+.  ..+.+|+|.++.+|--+
T Consensus       408 --------GMsdeqV~~FV~~YmPaY~~y~~~L~~~~~~~~~~~~~L~i~Id~~R~~~  457 (460)
T PLN03046        408 --------GMSDEEVMDFVSRYLPAYKAYLPTLYAEGPSGSDPDHVLVIDIDEERNPI  457 (460)
T ss_pred             --------CCCHHHHHHHHHHhhhHHHHHHHHHhccCCcccCCCceEEEEECCCCCcc
Confidence                    999999999999999999 999999877664  34678999999988643

>PLN02348 phosphoribulokinase

Probab=99.96  E-value=2.5e-28  Score=267.91  Aligned_cols=232  Identities=21%  Similarity=0.308  Sum_probs=179.2

Q ss_pred             HHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC--------------------Ccccccccccchhhh----hcccCCC
Q 003460          509 ALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG--------------------CEVVSLESYFKSEQV----KDFKYDD  564 (818)
Q Consensus       509 ~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg--------------------~~vis~Ddfy~~~~~----~~~~~d~  564 (818)
                      ....+.++|++|||+|+|||||||||+.|++.|+                    +.+|++||||+....    ...+..+
T Consensus        41 ~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ld  120 (395)
T PLN02348         41 VALAADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALD  120 (395)
T ss_pred             HhhccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCC
Confidence            3444567899999999999999999999999986                    258999999875221    1234567


Q ss_pred             cccccHHHHHHHHHHHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHH
Q 003460          565 FSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHL  643 (818)
Q Consensus       565 p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl  643 (818)
                      |.++|+++|.++|..|++|+.+..|.||+.++...+.   ....+.+|||+||+|+++ +.+++++|++|||+++.+.++
T Consensus       121 P~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~---e~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvrl  197 (395)
T PLN02348        121 PRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPP---ELIEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKF  197 (395)
T ss_pred             cccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCc---EEcCCCcEEEEechhhccCccccccCcEEEEEECCHHHHH
Confidence            9999999999999999999999999999999976642   345678999999999987 579999999999999999999


Q ss_pred             HHHHhcCccccCcccch-hhHHHhhcchhhhhccccCCcccEEEeCCCCCccCccchhhhhccccccchhhhhccCChhh
Q 003460          644 ISRVQRDKSRMGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAK  722 (818)
Q Consensus       644 ~Rri~Rd~~~rg~~~~~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~l~~~k~~~~~~~~~~~~~m~~~~  722 (818)
                      .|+++||..++|++.+. .+.+..+.|.|.+||+|++.+||+||+--. ..+.++.              .-.+.|+..-
T Consensus       198 ~RRI~RD~~eRG~S~EeV~~~i~ar~pd~~~yI~pqk~~ADiVI~v~p-~~l~~~~--------------~~~~~l~vrl  262 (395)
T PLN02348        198 AWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVIEVLP-TQLIPDD--------------NEGKVLRVRL  262 (395)
T ss_pred             HHHHHhhHhhcCCCHHHHHHHHHhcCcchhhhcccccccCCEEEEecC-CcCCCCC--------------CCCceEEEEE
Confidence            99999999999998876 455667899999999999999999986432 2221100              0011222222


Q ss_pred             h-hccccccceeeecCCCCC-----CCCCCCC-CCeEEEEEeC
Q 003460          723 F-CSSAQNFIDMYLRLPGIP-----TNGQLTE-SDCIRVRICE  758 (818)
Q Consensus       723 v-~~~v~~y~~~Yl~~~~~~-----~~~~~~~-~~~~~~~~~~  758 (818)
                      + ++-+..|-|.||+.+|-+     -...++| ...|++...-
T Consensus       263 i~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (395)
T PLN02348        263 IMKEGVKNFDPVYLFDEGSTISWIPCGRKLTCSYPGIKFFYGP  305 (395)
T ss_pred             EecCCCCCCCcceeeccCCccccccccccccCCCCCeEEEeec
Confidence            2 456788899999998742     1224555 3677777653

>PLN02796 D-glycerate 3-kinase

Probab=99.96  E-value=3.5e-29  Score=271.16  Aligned_cols=217  Identities=17%  Similarity=0.245  Sum_probs=154.8

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccchhhh-hccc-----------CCCcccccHHHHHHHH
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQV-KDFK-----------YDDFSSLDLSLLSKNI  577 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~~~~-~~~~-----------~d~p~t~D~~ll~~~L  577 (818)
                      .+|++|||+|++||||||+++.|...+.     +..|++||||.+... ...+           .+.|++||++++.++|
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e~L  177 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNALLELRGNAGSHDLALGVETL  177 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhhhhcCCCCchhHHHHHHHHH
Confidence            4789999999999999999999999884     568999999987432 1111           2458999999999999


Q ss_pred             HHHh----cCCceeccccccccc----ccCCCcceee-ecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHH
Q 003460          578 SDIR----NGRRTKVPIFDLETG----ARSGFKELEV-SEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRV  647 (818)
Q Consensus       578 ~~L~----~g~~v~~P~yD~~~~----~r~~~~~~~~-~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri  647 (818)
                      .+|+    .|+.+.+|+|||+.+    ||.+.+.|.. ..|.+||||||||+++ |.-.+.++.     .+.+.      
T Consensus       178 ~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l~~-----~~~~l------  246 (347)
T PLN02796        178 EALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAVKA-----VDPQL------  246 (347)
T ss_pred             HHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHhhc-----cChhH------
Confidence            9998    688999999999984    5766555644 3688999999999987 321111211     01111      


Q ss_pred             hcCccccCcccchhhHHHhhcchhhhhccccCCcccEEEeCCCCCccCccchhhhhccccccchhhhhccCChhhhhccc
Q 003460          648 QRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSA  727 (818)
Q Consensus       648 ~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~l~~~k~~~~~~~~~~~~~m~~~~v~~~v  727 (818)
                          ...+..+..  |...+...++.+|.-.   |+ -++++|.||++||+.|+..++.          |||++||.+||
T Consensus       247 ----~~vN~~L~~--y~~~w~~~~d~~i~L~---a~-~~~~v~~WR~qQE~~l~~~~~~----------gMsde~v~~FV  306 (347)
T PLN02796        247 ----EVVNKNLEA--YYDAWDKLVDSWIVIK---VD-DPSWVYEWRLQAEIAMRAKGKP----------GMSDEEVADFV  306 (347)
T ss_pred             ----HHHHHHHHH--HHHHHHHhhceEEEEe---CC-CchHHHHHHHHHHHHHHHhCCC----------CCCHHHHHHHH
Confidence                112222222  2111111222332211   00 1256799999999999977765          99999999999


Q ss_pred             cccceee-ecCCCCCCCCCC--CCCCeEEEEEeCceeE
Q 003460          728 QNFIDMY-LRLPGIPTNGQL--TESDCIRVRICEGRFA  762 (818)
Q Consensus       728 ~~y~~~Y-l~~~~~~~~~~~--~~~~~~~~~~~~~~~~  762 (818)
                      ++|||+| +|+|++...+..  ..+..|+|.++.+|--
T Consensus       307 ~~~mP~y~~y~~~l~~~~~~~~~~~~~L~i~id~~R~~  344 (347)
T PLN02796        307 SRYMPAYKAYLPGLYAEGPGGSDPDNVLVIEIDENRNP  344 (347)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCceEEEECCCCCc
Confidence            9999999 999999876654  3367899999998854

>PRK05439 pantothenate kinase; Provisional

Probab=99.95  E-value=6.7e-28  Score=260.07  Aligned_cols=239  Identities=19%  Similarity=0.244  Sum_probs=174.7

Q ss_pred             ccccccceecccCCCCCCc--ccccCCCcccceecccCCCCc-chhhhhHHHHHHHHHH-------HH--cCCCCEEEee
Q 003460          455 EPVLATWHFISSDPSHAGS--SVIGSSSFRDTVKLVPMPDSY-DFDRGLLLSVQAIQAL-------LE--NKGLPVIVGI  522 (818)
Q Consensus       455 ~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~i~~l-------~~--~~~~p~iIgI  522 (818)
                      .....+|+.+..+.+.+|+  ++....++.+.+.+..+.+-| ++.+.+.++....+.+       ..  ..+.|++|||
T Consensus        12 ~~~r~~w~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~v~~iy~plarli~~~~~~~~~~~~~~~~fl~~~~~~~~~iIgI   91 (311)
T PRK05439         12 EFSREQWAALRDSTPLTLTEEELERLRGLNDPISLEEVAEIYLPLSRLLNLYVAANQRLQAALEQFLGKNGQKVPFIIGI   91 (311)
T ss_pred             eECHHHHHHHHhcCCCCCCHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCCCCCEEEEE
Confidence            5678999955666666666  445555555555543322222 2232222222221111       11  4568999999


Q ss_pred             eCCCCccHHHHHHHHHHHhC-------Ccccccccccchhhh----hcc-cCCCcccccHHHHHHHHHHHhcCCc-eecc
Q 003460          523 GGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----KDF-KYDDFSSLDLSLLSKNISDIRNGRR-TKVP  589 (818)
Q Consensus       523 sG~sGSGKTTla~~L~~~lg-------~~vis~Ddfy~~~~~----~~~-~~d~p~t~D~~ll~~~L~~L~~g~~-v~~P  589 (818)
                      +|++||||||+|+.|+..++       +.++++||||++...    +.+ .++.|+++|+++|.++|..|++|+. +.+|
T Consensus        92 aG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk~G~~~v~~P  171 (311)
T PRK05439         92 AGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVKSGKPNVTAP  171 (311)
T ss_pred             ECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHHcCCCeEEee
Confidence            99999999999999998763       569999999998432    222 3678999999999999999999997 9999


Q ss_pred             cccccccccCCCcceeeecCCcEEEEEecccch-Hh------hhhcCCEEEEEEcChhHHHHHHHhcCcccc--------
Q 003460          590 IFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PE------IRKSLDLWIAVVGGVHSHLISRVQRDKSRM--------  654 (818)
Q Consensus       590 ~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~------l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~r--------  654 (818)
                      .||+.++++.+. ......+.+|||+||++++. +.      +++++|++|||+++.+.+..|++.|....|        
T Consensus       172 ~Yd~~~~d~~~~-~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~lr~~~~rdp~  250 (311)
T PRK05439        172 VYSHLIYDIVPG-EKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLKLRETAFSDPD  250 (311)
T ss_pred             eEEeecCCcCCC-ceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhhcCcc
Confidence            999999998753 33445678999999999985 44      489999999999999999888888876532        


Q ss_pred             -------Ccccch------hhHHHhhcchhhhhccccCCcccEEEeCCCCCcc
Q 003460          655 -------GCFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVL  694 (818)
Q Consensus       655 -------g~~~~~------~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l  694 (818)
                             |.+.++      .+|.....|++.+||.|++.+||+||..+-+...
T Consensus       251 s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~~~h~i  303 (311)
T PRK05439        251 SYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKGADHSI  303 (311)
T ss_pred             hhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCCCCCce
Confidence                   222121      2344567899999999999999999998765543

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=99.95  E-value=2e-27  Score=241.30  Aligned_cols=167  Identities=32%  Similarity=0.577  Sum_probs=149.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCC---eEEeccceecc----------cccCCCCCcccHHHHHHHHHhhhcCCc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGC---TLISMENYRVG----------VDEGNDLDSIDFDALVQNLQDLTEGKD  126 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~---~vI~~D~~~~~----------~~~~~~~~~~d~~~l~~~L~~l~~~~~  126 (818)
                      .+.++|||+|+|||||||+|+.|.+.|+.   .+|+.|+||+.          ..+++.|+++|++++.++|..|+.|+.
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~   85 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP   85 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence            44589999999999999999999999984   59999999883          235678999999999999999999999


Q ss_pred             cccccchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHHHHh-
Q 003460          127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDS-  203 (818)
Q Consensus       127 i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~~~-  203 (818)
                      +..|.|++..+.+.. ......+..+||+||++++. +.+++++|++|||+++.+.|+.||+.||...+ .+++.++++ 
T Consensus        86 v~~P~yd~~~~~r~~-~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~qy  164 (218)
T COG0572          86 VDLPVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQY  164 (218)
T ss_pred             ccccccchhcccccC-CccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            999999999999986 34556678899999999998 58999999999999999999999999999877 687777765 


Q ss_pred             ---hchhhhhccCCccccCcEEEECCC
Q 003460          204 ---IFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       204 ---~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                         +.|++++||+|++++||+||+-..
T Consensus       165 ~~~vkp~~~~fIeptk~~ADiiip~~~  191 (218)
T COG0572         165 VKTVRPMYEQFIEPTKKYADIIIPSGG  191 (218)
T ss_pred             HHhhChhhhhccCcccccceEEeecCC
Confidence               479999999999999999998763

>TIGR00318 cyaB adenylyl cyclase CyaB, putative

Probab=99.94  E-value=6e-27  Score=234.75  Aligned_cols=138  Identities=20%  Similarity=0.246  Sum_probs=125.9

Q ss_pred             ccccccccccccceeeccCCCCCcchhhhccCCeeeEeeeCCEEEEEEcceeecCCCcccCceeEEEEec----cHHHHH
Q 003460          249 SISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGL  324 (818)
Q Consensus       249 ~~~~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~~L  324 (818)
                      .|+.+.+...|+|+||++|+++|..++.++     |||+.++++.+|||||+.++..   +.+.|+|+.|    +|.++|
T Consensus        23 ~g~~~~~~~~q~D~Yfd~p~~~l~~~~~~L-----RiR~~~~~~~lT~Kgp~~~~~~---~~~~E~e~~v~d~~~~~~iL   94 (174)
T TIGR00318        23 KGFKFIKKEFQHDIYFSNPCRDFASTDEAL-----RIRKLTGEKFVTYKGPKIDNES---KTRKEIEFKIEDIENALQIL   94 (174)
T ss_pred             cCcccccccceEEEeecCCCcchhhCCcEE-----EEEEcCCcEEEEEeCCccCCcc---eEEEEEEEEECCHHHHHHHH
Confidence            456778889999999999999999888766     9999888999999999876554   9999999999    899999


Q ss_pred             HhcCCceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEecCH---------HHHHHHHHHcCCCCCccchhHHHHHH
Q 003460          325 LDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNR---------KTVGAEALRMGINGPWITKSYLEMVL  395 (818)
Q Consensus       325 ~~LGf~~~~~~~K~R~~~~~~~~~i~lD~v~~lg~~fvEiE~~~~---------~~i~~~~~~Lgl~~~~~~~sYlel~l  395 (818)
                      .+|||.++++++|.|++|++++++|+||.|+|||. |||||++.+         +.|.++|++||+.++.+++||+||++
T Consensus        95 ~~LG~~~~~~v~K~R~~~~l~~~~i~lD~v~~lG~-FvEIE~~~~~~~~~~~~~~~i~~~~~~LGl~~~~~~~sY~ell~  173 (174)
T TIGR00318        95 KKLGFKKVYEVIKKRRIYQTNELNVSIDDVEGLGF-FLEIEKIINNINDKDLALEEIFEIINQLGIKDNIERRSYLELLS  173 (174)
T ss_pred             HHCCCeEEEEEEEEEEEEEECCEEEEEEccCCCcc-EEEEEEecCCccchHHHHHHHHHHHHHcCCCcCcccccHHHHhh
Confidence            99999999999999999999999999999999998 999999832         58999999999955569999999984

The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=99.94  E-value=3.3e-27  Score=246.69  Aligned_cols=166  Identities=19%  Similarity=0.322  Sum_probs=144.2

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccchhh-----------hhcccCCC--cccccHHHHHHHHHHH
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQ-----------VKDFKYDD--FSSLDLSLLSKNISDI  580 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~~~-----------~~~~~~d~--p~t~D~~ll~~~L~~L  580 (818)
                      ||||+|+|||||||++++|++.|+     +.+|+.|+||+...           ....||++  |++.|+++|.++|..|
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L   80 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY   80 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence            599999999999999999998874     57999999999411           12368898  9999999999999999


Q ss_pred             hcCCceeccccccc----------ccccCCCcceee-ecCCcEEEEEecccch----HhhhhcCCEEEEEEcChhHHHHH
Q 003460          581 RNGRRTKVPIFDLE----------TGARSGFKELEV-SEDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHLIS  645 (818)
Q Consensus       581 ~~g~~v~~P~yD~~----------~~~r~~~~~~~~-~~~~~vvIvEG~~~~~----~~l~~~~D~~I~v~~~~d~rl~R  645 (818)
                      ++|+.+..|.||+.          .|.+.+   |.. ..+.+|||+||+|.+.    +.+++++|++|||+++.+.++.|
T Consensus        81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~---~~~~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~ir  157 (277)
T cd02029          81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTP---WEDLPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQ  157 (277)
T ss_pred             HcCCCcccceeeccccccccccCCCCccCC---cccccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHH
Confidence            99999999999883          244443   332 4688999999999543    68999999999999999999999


Q ss_pred             HHhcCccccCcccch--hhHHHhhcchhhhhccccCCcccEEEeC
Q 003460          646 RVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRN  688 (818)
Q Consensus       646 ri~Rd~~~rg~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n  688 (818)
                      |+.||..+||++.+.  .+|...+ |.|.+||.|++++||++|+.
T Consensus       158 RI~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fqr  201 (277)
T cd02029         158 KIHRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQR  201 (277)
T ss_pred             HHHhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEec
Confidence            999999999999987  6888877 99999999999999999874

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>COG4240 Predicted kinase [General function prediction only]

Probab=99.93  E-value=2.8e-27  Score=236.08  Aligned_cols=223  Identities=21%  Similarity=0.311  Sum_probs=150.9

Q ss_pred             HcCCCCEEEeeeCCCCccHHHHHHHHHHHh---C---Ccccccccccchhhhh-----cc-----cCCCcccccHHHHHH
Q 003460          512 ENKGLPVIVGIGGPSGSGKTSLAHKMANIV---G---CEVVSLESYFKSEQVK-----DF-----KYDDFSSLDLSLLSK  575 (818)
Q Consensus       512 ~~~~~p~iIgIsG~sGSGKTTla~~L~~~l---g---~~vis~Ddfy~~~~~~-----~~-----~~d~p~t~D~~ll~~  575 (818)
                      ...++|+||||+||+||||||+|..|...|   |   +..+|+||||+++...     ..     ..+-|||||+.++..
T Consensus        45 qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlgln  124 (300)
T COG4240          45 QERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLN  124 (300)
T ss_pred             hhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHH
Confidence            356789999999999999999999988766   2   5679999999995421     11     246799999999999


Q ss_pred             HHHHHhcCCc-eecccccccc----cccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEE-EEEcChhHHHHHHHh
Q 003460          576 NISDIRNGRR-TKVPIFDLET----GARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWI-AVVGGVHSHLISRVQ  648 (818)
Q Consensus       576 ~L~~L~~g~~-v~~P~yD~~~----~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I-~v~~~~d~rl~Rri~  648 (818)
                      +|+.+.+|++ |.+|.|||+.    +||.+...|... +.+|+|+||||+++ |--..++.... -+.+..+....+-+ 
T Consensus       125 VLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~-~vdivIlEGWfvGfrPidp~ll~~p~n~l~~~ed~a~~~dv-  202 (300)
T COG4240         125 VLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKF-EVDIVILEGWFVGFRPIDPELLAAPVNALEAAEDGAWRADV-  202 (300)
T ss_pred             HHHHHhcCCCCcccccccchhccCCCCCCCcccceec-ceeEEEEeeeeeecccCCHHHhCCCCccchhhccccHHHHH-
Confidence            9999998765 7999999975    688776666543 48999999999986 32111121100 00011111111111 


Q ss_pred             cCccccCcccchhhHHHhhcchhhhhcccc-CCcccEEEeCCCCCccCccchhhhhccccccchhhhhccCChhhhhccc
Q 003460          649 RDKSRMGCFMSQNDIMMTVFPMFQQHIEPH-LVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSA  727 (818)
Q Consensus       649 Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p~-~~~ADivI~n~~~~~l~~e~~l~~~k~~~~~~~~~~~~~m~~~~v~~~v  727 (818)
                                  +.-...+.|.|++. ..- .-.|+ -|+++|.||+||||.|++.-+          +||+|+||..||
T Consensus       203 ------------N~kLa~Y~pL~~rI-dsLillta~-din~vy~WRlQqEhkliAr~~----------kgmsdeqv~efv  258 (300)
T COG4240         203 ------------NDKLAPYRPLFDRI-DSLILLTAP-DINTVYAWRLQQEHKLIARLA----------KGMSDEQVSEFV  258 (300)
T ss_pred             ------------HhhhhhhHHHHHHh-hheeEeccc-chHHHHHHHHHHHHHHHHHHh----------ccCcHHHHHHHH
Confidence                        11122344455442 111 01111 347889999999999886544          599999999999


Q ss_pred             cccceee-ecCCCCCCCCCCCCCCeEEEEEeCce
Q 003460          728 QNFIDMY-LRLPGIPTNGQLTESDCIRVRICEGR  760 (818)
Q Consensus       728 ~~y~~~Y-l~~~~~~~~~~~~~~~~~~~~~~~~~  760 (818)
                      +.|||.| ||+..+..--.+.--.|+.+-.+.+|
T Consensus       259 n~ymrsl~lylq~ls~~~al~~~a~leI~~d~nr  292 (300)
T COG4240         259 NAYMRSLELYLQRLSEWIALDLPAILEIAVDLNR  292 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcceeEEeecccc
Confidence            9999999 99887664322333567777766543

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=99.93  E-value=4.5e-26  Score=244.46  Aligned_cols=180  Identities=19%  Similarity=0.219  Sum_probs=145.5

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhC-------Ccccccccccchhhh-h----cccCCCcccccHHHHHHHHHHHh
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV-K----DFKYDDFSSLDLSLLSKNISDIR  581 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg-------~~vis~Ddfy~~~~~-~----~~~~d~p~t~D~~ll~~~L~~L~  581 (818)
                      .+.|+||||+||+||||||+|+.|+..+.       +.++++|+||.+... .    ..+++.|+++|.+++.+.+..|+
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk  138 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK  138 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence            46799999999999999999999987763       568999999987432 1    12467899999999999999999


Q ss_pred             cCCc-eecccccccccccCCCcceeeecCCcEEEEEecccch-Hh----------hhhcCCEEEEEEcChhHHHHHHHhc
Q 003460          582 NGRR-TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PE----------IRKSLDLWIAVVGGVHSHLISRVQR  649 (818)
Q Consensus       582 ~g~~-v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~----------l~~~~D~~I~v~~~~d~rl~Rri~R  649 (818)
                      +|+. +.+|.||+.++++.+. ......+.+|||+||||++. +.          +++++|++|||++|.+.+..|++.|
T Consensus       139 ~g~~~v~~P~Yd~~~~d~~~~-~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~R  217 (290)
T TIGR00554       139 SGKPNVTAPVYSHLTYDVIPD-GFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINR  217 (290)
T ss_pred             CCCCceecCccccccCCcCCC-CeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHHH
Confidence            9986 9999999999998864 33445788999999999985 33          5799999999999999999999988


Q ss_pred             Cccc--cC-------------cccch------hhHHHhhcchhhhhccccCCcccEEEeCCCCCcc
Q 003460          650 DKSR--MG-------------CFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVL  694 (818)
Q Consensus       650 d~~~--rg-------------~~~~~------~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l  694 (818)
                      ....  ++             -+.++      ..|.....|++.+||.|++.+||+||..+-+...
T Consensus       218 ~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~~h~i  283 (290)
T TIGR00554       218 FLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGANHAV  283 (290)
T ss_pred             HHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCCCCcE
Confidence            6432  22             11111      2245567899999999999999999998766543

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=99.93  E-value=5.4e-26  Score=229.18  Aligned_cols=168  Identities=40%  Similarity=0.643  Sum_probs=142.0

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHh-----CCcccccccccchh---hhhcccCCCcccccHHHHHHHHHHHhcCCceeccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFKSE---QVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPI  590 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~l-----g~~vis~Ddfy~~~---~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~  590 (818)
                      +|||+|+|||||||||+.|+..+     ++.+|++||||++.   .....+++.|..+|++++.+.|..|++|+.+.+|.
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~   80 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI   80 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence            58999999999999999999987     36799999999864   12234677788899999999999999999999999


Q ss_pred             ccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhH-HHHHHHhcCccccCcccchhhHHHhhcc
Q 003460          591 FDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHS-HLISRVQRDKSRMGCFMSQNDIMMTVFP  669 (818)
Q Consensus       591 yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~-rl~Rri~Rd~~~rg~~~~~~~~~~~v~p  669 (818)
                      ||+.++.+.... .....+.+|||+||+|++++.+++++|++||++++.+. |+.||+.||..+||++.+..-..+.+.|
T Consensus        81 yd~~~~~~~~~~-~~~~~~~~vIIvEG~~~l~~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~~~~~  159 (179)
T cd02028          81 YDFRTGKRRGYR-KLKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMWPSVP  159 (179)
T ss_pred             ceeECCccCCCc-eEEeCCCCEEEEecHHhcCHhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhccccc
Confidence            999999887532 23456789999999999999999999999999999998 9999999999999999886322244556


Q ss_pred             hhhhhc-cccCCcccEEEe
Q 003460          670 MFQQHI-EPHLVHAHLKIR  687 (818)
Q Consensus       670 ~~~~~I-~p~~~~ADivI~  687 (818)
                      +++.++ .|++..||++++
T Consensus       160 ~~~~~~~~~~~~~ad~~~~  178 (179)
T cd02028         160 SGEEFIIPPLQEAAIVMFN  178 (179)
T ss_pred             CchhhcCCCchhccceecc
Confidence            666555 678999999875

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=99.93  E-value=1.6e-25  Score=232.79  Aligned_cols=173  Identities=19%  Similarity=0.263  Sum_probs=140.7

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhC-------Ccccccccccchhhh----hcc-cCCCcccccHHHHHHHHHHHhcC-Cc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----KDF-KYDDFSSLDLSLLSKNISDIRNG-RR  585 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg-------~~vis~Ddfy~~~~~----~~~-~~d~p~t~D~~ll~~~L~~L~~g-~~  585 (818)
                      ||||+|++||||||||+.|+..+.       +.++++|+||.+...    ... +.+.|+++|.+++.+.|..|++| +.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~   80 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN   80 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence            689999999999999999999883       568999999987432    112 35679999999999999999994 78


Q ss_pred             eecccccccccccCCCcceeeecCCcEEEEEecccchH-h-----hhhcCCEEEEEEcChhHH---HHHHHhcCccccCc
Q 003460          586 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP-E-----IRKSLDLWIAVVGGVHSH---LISRVQRDKSRMGC  656 (818)
Q Consensus       586 v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~-~-----l~~~~D~~I~v~~~~d~r---l~Rri~Rd~~~rg~  656 (818)
                      +.+|.||+..+++.+. ......+.+|||+||++++++ .     +++++|++|||+++.+.+   +.||..|+..++|+
T Consensus        81 v~~P~yd~~~~~~~~~-~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r  159 (220)
T cd02025          81 VKIPVYSHLTYDVIPG-EKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFS  159 (220)
T ss_pred             EEccccceeccccCCC-CceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999998864 333356779999999999974 3     899999999999999986   55555556666665


Q ss_pred             ccch------------------hhHHHhhcchhhhhccccCCcccEEEeCCCCC
Q 003460          657 FMSQ------------------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDP  692 (818)
Q Consensus       657 ~~~~------------------~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~  692 (818)
                      ....                  .+|...++|++.+||.|++..||+||+.+.+.
T Consensus       160 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~~~~  213 (220)
T cd02025         160 DPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGADH  213 (220)
T ss_pred             CchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeCCCC
Confidence            5542                  13566789999999999999999999876443

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK15453 phosphoribulokinase; Provisional

Probab=99.92  E-value=3.4e-25  Score=233.40  Aligned_cols=173  Identities=18%  Similarity=0.282  Sum_probs=145.3

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccc-hhh----------hhcccCCC--cccccHHHHHHH
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK-SEQ----------VKDFKYDD--FSSLDLSLLSKN  576 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~-~~~----------~~~~~~d~--p~t~D~~ll~~~  576 (818)
                      .++.+|||+|+|||||||+|+.|++.|+     +.++++|+||+ +..          ....||++  |++.|+++|.+.
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~   82 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQL   82 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence            4678999999999999999999998884     66899999997 311          11237888  999999999999


Q ss_pred             HHHHhcCCceeccccccc-----ccccCCC--cceeee-cCCcEEEEEecccch----HhhhhcCCEEEEEEcChhHHHH
Q 003460          577 ISDIRNGRRTKVPIFDLE-----TGARSGF--KELEVS-EDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHLI  644 (818)
Q Consensus       577 L~~L~~g~~v~~P~yD~~-----~~~r~~~--~~~~~~-~~~~vvIvEG~~~~~----~~l~~~~D~~I~v~~~~d~rl~  644 (818)
                      |..|++|+.+..|.|++.     .+.+.+.  ..|+.. ++.+|||+||+|.+.    ..+++++|++|||+++.+.++.
T Consensus        83 l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~i  162 (290)
T PRK15453         83 FREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEWI  162 (290)
T ss_pred             HHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHHH
Confidence            999999999999999743     2444421  234333 568999999999874    5789999999999999999999


Q ss_pred             HHHhcCccccCcccch--hhHHHhhcchhhhhccccCCcccEEEeC
Q 003460          645 SRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRN  688 (818)
Q Consensus       645 Rri~Rd~~~rg~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n  688 (818)
                      |++.||..+||++.+.  .++.... |.|.+||.|++++||+++..
T Consensus       163 rRI~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInfqr  207 (290)
T PRK15453        163 QKIHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINFQR  207 (290)
T ss_pred             HHHHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEEEe
Confidence            9999999999999987  6777765 99999999999999998653

>PTZ00301 uridine kinase; Provisional

Probab=99.92  E-value=8e-25  Score=225.36  Aligned_cols=166  Identities=27%  Similarity=0.459  Sum_probs=142.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh----C---CeEEeccceecc----------cccCCCCCcccHHHHHHHHHhhhcC
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI----G---CTLISMENYRVG----------VDEGNDLDSIDFDALVQNLQDLTEG  124 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L----g---~~vI~~D~~~~~----------~~~~~~~~~~d~~~l~~~L~~l~~~  124 (818)
                      .++|||+|+|||||||||+.|++.+    |   +.++++|+||+.          ..+++.|+++|++.+.+.|..++.|
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g   82 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG   82 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence            4899999999999999999998766    2   358899999873          3456789999999999999999999


Q ss_pred             CccccccchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHHHH
Q 003460          125 KDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLID  202 (818)
Q Consensus       125 ~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~~  202 (818)
                      +.+..|.|++..+.+... ....++.++||+||+++++ +.+++++|++|||+++.++++.||+.||..++ .+.+.++.
T Consensus        83 ~~i~~P~yd~~~~~~~~~-~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~  161 (210)
T PTZ00301         83 KTVQIPQYDYVHHTRSDT-AVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIE  161 (210)
T ss_pred             CcccCCCcccccCCcCCc-eEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHH
Confidence            999999999999887753 3445566899999999985 88999999999999999999999999998765 56666655


Q ss_pred             h----hchhhhhccCCccccCcEEEECCCC
Q 003460          203 S----IFPLFRKHIEPDLHHAQIRINNRFV  228 (818)
Q Consensus       203 ~----~~p~~~~~Iep~~~~ADiII~N~~~  228 (818)
                      +    ..|.+.+||+|.+.+||+||++.-.
T Consensus       162 ~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~  191 (210)
T PTZ00301        162 QYEATVRPMYYAYVEPSKVYADIIVPSWKD  191 (210)
T ss_pred             HHHHhhcccHHHHcCccccCCcEEEcCCCc
Confidence            3    5899999999999999999987744

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.92  E-value=1.8e-24  Score=223.39  Aligned_cols=175  Identities=32%  Similarity=0.492  Sum_probs=152.2

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhC---Ccccccccccchhh------hhcccCCCcccccHHHHHHHHHHHhcCC
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGR  584 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg---~~vis~Ddfy~~~~------~~~~~~d~p~t~D~~ll~~~L~~L~~g~  584 (818)
                      ..++.+|||+|+||||||||++.|+..++   +.++++|+||....      ....++++|.++|++.+.+.|..++.|+
T Consensus         3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~   82 (209)
T PRK05480          3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGK   82 (209)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCC
Confidence            35789999999999999999999999983   56899999998632      2345688999999999999999999999


Q ss_pred             ceecccccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch--h
Q 003460          585 RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--N  661 (818)
Q Consensus       585 ~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~--~  661 (818)
                      .+..|.||+.++.+..  ......+.+++|+||+++++ +.+.+.+|.+|||+++.++++.|++.||...+|.+.+.  .
T Consensus        83 ~v~~p~~d~~~~~~~~--~~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~  160 (209)
T PRK05480         83 AIEIPVYDYTEHTRSK--ETIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVIN  160 (209)
T ss_pred             ccccCcccccccccCC--CeEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHH
Confidence            9999999999998764  22234567899999999997 78999999999999999999999999999888987765  4


Q ss_pred             hHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460          662 DIMMTVFPMFQQHIEPHLVHAHLKIRNDF  690 (818)
Q Consensus       662 ~~~~~v~p~~~~~I~p~~~~ADivI~n~~  690 (818)
                      .|...+.|.|..|++|.+..||++|+|+.
T Consensus       161 ~~~~~~~~~~~~~i~~~~~~AD~vI~~~~  189 (209)
T PRK05480        161 QYLSTVRPMHLQFIEPSKRYADIIIPEGG  189 (209)
T ss_pred             HHHHhhhhhHHhhccHhhcceeEEecCCC
Confidence            56667889999999999999999999864

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=99.91  E-value=4e-24  Score=218.39  Aligned_cols=163  Identities=32%  Similarity=0.534  Sum_probs=137.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhC---------CeEEeccceecc------------cccCCCCCcccHHHHHHHHHhhh
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIG---------CTLISMENYRVG------------VDEGNDLDSIDFDALVQNLQDLT  122 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg---------~~vI~~D~~~~~------------~~~~~~~~~~d~~~l~~~L~~l~  122 (818)
                      +|||+|+|||||||||+.|+..|+         ..++++|+|+..            ...++.|+++|++.+.+.|..++
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~   80 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK   80 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence            699999999999999999999996         347788998752            12346789999999999999999


Q ss_pred             cCCccccccchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHH
Q 003460          123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSL  200 (818)
Q Consensus       123 ~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~  200 (818)
                      .|+.+..|.|++..+.+...... ..+.++||+||+++++ +.+++++|++|||+++.++++.|++.||...+ .+.+++
T Consensus        81 ~g~~i~~p~yd~~~~~~~~~~~~-~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~~  159 (194)
T PF00485_consen   81 NGGSIEIPIYDFSTGDRDPWIII-ISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEEV  159 (194)
T ss_dssp             TTSCEEEEEEETTTTEEEEEEEE-EES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHHH
T ss_pred             CCCcccccccccccccceeeeee-cCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCcceeE
Confidence            99999999999999988774333 4467899999999887 67999999999999999999999999998766 678877


Q ss_pred             HHhh---chhhhhccCCccccCcEEEECCC
Q 003460          201 IDSI---FPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       201 ~~~~---~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      ++++   .|.+.+||+|++++||+||++.-
T Consensus       160 ~~~~~~~~~~~~~~I~p~~~~ADivi~~~~  189 (194)
T PF00485_consen  160 IAQYERVRPGYERYIEPQKERADIVIPSGP  189 (194)
T ss_dssp             HHHHHTHHHHHHHCTGGGGGG-SEEEESCT
T ss_pred             EEEeecCChhhhhheeccccccEEEECCCC
Confidence            7765   69999999999999999999874

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK05439 pantothenate kinase; Provisional

Probab=99.91  E-value=9.8e-24  Score=227.81  Aligned_cols=199  Identities=18%  Similarity=0.230  Sum_probs=160.6

Q ss_pred             cccCCcccccch---hhHHHHHHHHHHHH----------------hcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----
Q 003460           32 LQSLPVHASFDH---GYYLLVKSIQELRE----------------KKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----   87 (818)
Q Consensus        32 ~~~~~~~~s~~~---~~~~l~~~i~~~~~----------------~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----   87 (818)
                      ++++++.+|.++   +|.++++.|.....                ..+.+++|||+|++||||||+|+.|++.++     
T Consensus        37 l~~~~~~~~~~~v~~iy~plarli~~~~~~~~~~~~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~  116 (311)
T PRK05439         37 LRGLNDPISLEEVAEIYLPLSRLLNLYVAANQRLQAALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEH  116 (311)
T ss_pred             hhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCC
Confidence            678889999776   99999999965442                235689999999999999999999998764     


Q ss_pred             --CeEEeccceeccc---------ccCCCCCcccHHHHHHHHHhhhcCCc-cccccchhhhhccccccccccCCccEEEE
Q 003460           88 --CTLISMENYRVGV---------DEGNDLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSKVIKGASSGVVIV  155 (818)
Q Consensus        88 --~~vI~~D~~~~~~---------~~~~~~~~~d~~~l~~~L~~l~~~~~-i~~p~~d~~~~~~~~~~~~~~~~~~vVIv  155 (818)
                        +.+|++|+||...         ..++.|+++|++.+.+.|..++.|+. +..|.||+..+++.........+.++||+
T Consensus       117 ~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIV  196 (311)
T PRK05439        117 PKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIV  196 (311)
T ss_pred             CceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEE
Confidence              5789999998632         24678999999999999999999987 99999999999987555555567789999


Q ss_pred             Eecccch-hh------hhcCCCEEEEEEcCHHHHHHHHHHhccCC----------------CcCHHHHHH--------hh
Q 003460          156 DGTYALD-AR------LRSLLDIRVAVVGGVHFSLISKVQYDIGD----------------SCSLDSLID--------SI  204 (818)
Q Consensus       156 EG~~l~~-~~------l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~----------------~~s~e~~~~--------~~  204 (818)
                      ||++++. +.      +++++|++|||+++.+.+..|++.|...-                ..+.+++.+        ..
T Consensus       197 EGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~lr~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~  276 (311)
T PRK05439        197 EGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLKLRETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEIN  276 (311)
T ss_pred             cCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcc
Confidence            9999885 33      48999999999999999888877776431                123333332        23


Q ss_pred             chhhhhccCCccccCcEEEECCCCCC
Q 003460          205 FPLFRKHIEPDLHHAQIRINNRFVSS  230 (818)
Q Consensus       205 ~p~~~~~Iep~~~~ADiII~N~~~~~  230 (818)
                      .|++++||.|++.+||+||.++....
T Consensus       277 ~pn~~~~I~Ptk~~ADlIi~~~~~h~  302 (311)
T PRK05439        277 LPNLEENILPTRERADLILHKGADHS  302 (311)
T ss_pred             hhhHHHhccCCCcCCCEEEeCCCCCc
Confidence            69999999999999999999875433

>PRK07429 phosphoribulokinase; Provisional

Probab=99.90  E-value=1.8e-23  Score=228.63  Aligned_cols=209  Identities=22%  Similarity=0.318  Sum_probs=165.2

Q ss_pred             cCCCCEEEeeeCCCCccHHHHHHHHHHHhC---Ccccccccccchh--hhhccc--CCCcccccHHHHHHHHHHHhcCCc
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSE--QVKDFK--YDDFSSLDLSLLSKNISDIRNGRR  585 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~lg---~~vis~Ddfy~~~--~~~~~~--~d~p~t~D~~ll~~~L~~L~~g~~  585 (818)
                      ..++|++|||+|+||||||||++.|+..++   +.++++||||...  +.....  .-+|.+.|++++.+.+..|++|+.
T Consensus         4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~   83 (327)
T PRK07429          4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQP   83 (327)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCc
Confidence            356899999999999999999999999987   6789999997531  122222  236889999999999999999999


Q ss_pred             eecccccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch-hhH
Q 003460          586 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-NDI  663 (818)
Q Consensus       586 v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~-~~~  663 (818)
                      +..|.||+.++...+   +....+.++||+||+++++ ..+++.+|++|||+++.+.++.|+++|+..++|.+.++ .+.
T Consensus        84 I~~P~yd~~~g~~~~---~~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~  160 (327)
T PRK07429         84 ILKPIYNHETGTFDP---PEYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAE  160 (327)
T ss_pred             eecceeecCCCCcCC---cEecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence            999999999987653   2334567999999999765 67889999999999999999999999999999988775 456


Q ss_pred             HHhhcchhhhhccccCCcccEEEeCCCCCccCccchhhhhccccccchhhhhccCChhhh-hccccccceeeecCCC
Q 003460          664 MMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKF-CSSAQNFIDMYLRLPG  739 (818)
Q Consensus       664 ~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~l~~~k~~~~~~~~~~~~~m~~~~v-~~~v~~y~~~Yl~~~~  739 (818)
                      +....|.+.+||+|.+..||+||++...--......               .+.|+..-+ ++-+..|-+.|++.++
T Consensus       161 i~~r~pd~~~yI~P~k~~ADiVI~~~p~~~~~~~~~---------------~~~l~v~li~~~~~~~~~~~~~~d~~  222 (327)
T PRK07429        161 IEAREPDFEAYIRPQRQWADVVIQFLPTQLIDNDEE---------------NKVLRVRLVLRPGIPHPDPAYLFDEG  222 (327)
T ss_pred             HHHhCccHhhhhcccccCCCEEEEcCCCcCCCCCCC---------------CcEEEEEEEecCCCCCCCcceeeccc
Confidence            667899999999999999999998753221110110               112332222 3447889999999888

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=99.89  E-value=1.3e-22  Score=217.85  Aligned_cols=196  Identities=17%  Similarity=0.205  Sum_probs=158.6

Q ss_pred             cccCCcccccch---hhHHHHHHHHHHHH----------------hcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----
Q 003460           32 LQSLPVHASFDH---GYYLLVKSIQELRE----------------KKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----   87 (818)
Q Consensus        32 ~~~~~~~~s~~~---~~~~l~~~i~~~~~----------------~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----   87 (818)
                      ++++++.+|.++   +|.++.+.++.+..                ..+.+++|||+|++||||||+|+.|+..+.     
T Consensus        13 ~~~~~~~~~~~~v~~iy~pl~~~~~~~~~~~~~~~~~~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~   92 (290)
T TIGR00554        13 LKGINEDLSLEEVATIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQALLSRWPEH   92 (290)
T ss_pred             hhCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCC
Confidence            678899999776   99999999866553                125689999999999999999999988763     


Q ss_pred             --CeEEeccceeccc---------ccCCCCCcccHHHHHHHHHhhhcCCc-cccccchhhhhccccccccccCCccEEEE
Q 003460           88 --CTLISMENYRVGV---------DEGNDLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSKVIKGASSGVVIV  155 (818)
Q Consensus        88 --~~vI~~D~~~~~~---------~~~~~~~~~d~~~l~~~L~~l~~~~~-i~~p~~d~~~~~~~~~~~~~~~~~~vVIv  155 (818)
                        +.++++|+||...         ...+.|+++|...+.+.+..+..|.. +.+|.||+..+++.........+.+|||+
T Consensus        93 g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIv  172 (290)
T TIGR00554        93 RKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILIL  172 (290)
T ss_pred             CceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEE
Confidence              5789999998632         24567899999999999999999985 99999999999987655445567889999


Q ss_pred             Eecccch-hh----------hhcCCCEEEEEEcCHHHHHHHHHHhccCC----------------CcCHHHHHH------
Q 003460          156 DGTYALD-AR----------LRSLLDIRVAVVGGVHFSLISKVQYDIGD----------------SCSLDSLID------  202 (818)
Q Consensus       156 EG~~l~~-~~----------l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~----------------~~s~e~~~~------  202 (818)
                      ||++++. +.          +++++|++|||++|.+.+..|++.|...-                ..+.+++.+      
T Consensus       173 EGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~R~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w  252 (290)
T TIGR00554       173 EGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIW  252 (290)
T ss_pred             CCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHH
Confidence            9999986 33          56999999999999999999988885311                122323222      


Q ss_pred             --hhchhhhhccCCccccCcEEEECCC
Q 003460          203 --SIFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       203 --~~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                        ...|++.++|.|++.+||+||+++-
T Consensus       253 ~~~~~~nl~~~I~Ptr~rAdlIl~~~~  279 (290)
T TIGR00554       253 KEINWLNLKQNILPTRERASLILTKGA  279 (290)
T ss_pred             HHcchhhHHhhCCCCcccccEEEecCC
Confidence              1379999999999999999999874

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR00235 udk uridine kinase

Probab=99.89  E-value=1.1e-22  Score=209.80  Aligned_cols=175  Identities=33%  Similarity=0.512  Sum_probs=150.3

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhC---Ccccccccccchhh------hhcccCCCcccccHHHHHHHHHHHhcCC
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGR  584 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg---~~vis~Ddfy~~~~------~~~~~~d~p~t~D~~ll~~~L~~L~~g~  584 (818)
                      .++..+|||+|++|||||||++.|+..++   +.++++|+||....      ....+++.|.++|.+++.+.|+.|+.|+
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~   82 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGS   82 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCC
Confidence            35678999999999999999999999885   67899999987622      2345678899999999999999999999


Q ss_pred             ceecccccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch--h
Q 003460          585 RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--N  661 (818)
Q Consensus       585 ~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~--~  661 (818)
                      .+.+|.||+.++++..  ......+.+++|+||++++. +.+.+.+|.+|||+++.+.++.|++.||...+|+..+.  .
T Consensus        83 ~v~~p~yd~~~~~~~~--~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~  160 (207)
T TIGR00235        83 PIDVPVYDYVNHTRPK--ETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVID  160 (207)
T ss_pred             CEecccceeecCCCCC--ceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHH
Confidence            9999999999888743  23334567999999999975 66889999999999999999999999999888888764  4


Q ss_pred             hHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460          662 DIMMTVFPMFQQHIEPHLVHAHLKIRNDF  690 (818)
Q Consensus       662 ~~~~~v~p~~~~~I~p~~~~ADivI~n~~  690 (818)
                      +|....+|.|..|+.|.+..||+||+++-
T Consensus       161 ~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~  189 (207)
T TIGR00235       161 QYRKTVRPMYEQFVEPTKQYADLIIPEGG  189 (207)
T ss_pred             HHHHhhhhhHHHhCcccccccEEEEcCCC
Confidence            66677899999999999999999998753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=99.89  E-value=1e-22  Score=208.44  Aligned_cols=172  Identities=34%  Similarity=0.517  Sum_probs=147.5

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHh---CCcccccccccchhh------hhcccCCCcccccHHHHHHHHHHHhcCCceecc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIV---GCEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVP  589 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~l---g~~vis~Ddfy~~~~------~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P  589 (818)
                      +|||+|++||||||+++.|+..+   ++.++++|+||++..      .....++.|.++|++.+.+.|..++.|+.+..|
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p   80 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence            58999999999999999999987   378999999997522      123457889999999999999999999999999


Q ss_pred             cccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch--hhHHHh
Q 003460          590 IFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMT  666 (818)
Q Consensus       590 ~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~--~~~~~~  666 (818)
                      .||++++.+... .. ...+.+++|+||+++++ +.+.+.+|.+|||+++.+.++.|++.||..+||.+.+.  ..+...
T Consensus        81 ~~d~~~~~~~~~-~~-~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~  158 (198)
T cd02023          81 VYDFKTHSRLKE-TV-TVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKF  158 (198)
T ss_pred             ccccccCcccCC-ce-ecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHh
Confidence            999999987642 22 34567999999999987 78889999999999999999999999999888987654  456667


Q ss_pred             hcchhhhhccccCCcccEEEeCCCCC
Q 003460          667 VFPMFQQHIEPHLVHAHLKIRNDFDP  692 (818)
Q Consensus       667 v~p~~~~~I~p~~~~ADivI~n~~~~  692 (818)
                      ..+.+..|+++++..||++|+|+-+.
T Consensus       159 ~~~~~~~~i~~~~~~aD~ii~~~~~~  184 (198)
T cd02023         159 VKPMHEQFIEPTKRYADVIIPRGGDN  184 (198)
T ss_pred             hhhhHHHhCccchhceeEEECCCCCc
Confidence            88999999999999999999986443

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=99.88  E-value=2e-22  Score=215.85  Aligned_cols=168  Identities=21%  Similarity=0.386  Sum_probs=142.2

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhC---Ccccccccccchhh--hhc--ccCCCcccccHHHHHHHHHHHhcCCceecccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSEQ--VKD--FKYDDFSSLDLSLLSKNISDIRNGRRTKVPIF  591 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg---~~vis~Ddfy~~~~--~~~--~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~y  591 (818)
                      +|||+|++|||||||++.|+..++   +.++++|+|++...  ...  ....+|.+.+++++.+.+..|++|+.+..|.|
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y   80 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY   80 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence            589999999999999999999874   66999999986421  111  23346888899999999999999999999999


Q ss_pred             cccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch-hhHHHhhcc
Q 003460          592 DLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-NDIMMTVFP  669 (818)
Q Consensus       592 D~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~-~~~~~~v~p  669 (818)
                      |+.++...+   .....+.++||+||+++++ +.+++++|++|||+++.+.++.|+++|+..++|.+.+. .+.+....|
T Consensus        81 ~~~~~~~~~---~~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~r~~  157 (273)
T cd02026          81 NHVTGLIDP---PELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEARKP  157 (273)
T ss_pred             cccCCCcCC---cEEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHhhch
Confidence            999987543   2334567999999999875 68999999999999999999999999999999988775 445556799


Q ss_pred             hhhhhccccCCcccEEEeCC
Q 003460          670 MFQQHIEPHLVHAHLKIRND  689 (818)
Q Consensus       670 ~~~~~I~p~~~~ADivI~n~  689 (818)
                      .+.+||+|++.+||+||+..
T Consensus       158 ~~~~~I~P~~~~ADvVI~~~  177 (273)
T cd02026         158 DFEAYIDPQKQYADVVIQVL  177 (273)
T ss_pred             hHHHHhccccccCcEEEEcc
Confidence            99999999999999999754

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PLN02348 phosphoribulokinase

Probab=99.88  E-value=4.9e-22  Score=218.40  Aligned_cols=177  Identities=23%  Similarity=0.363  Sum_probs=146.4

Q ss_pred             HHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC--------------------CeEEeccceecc-cc-----
Q 003460           48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG--------------------CTLISMENYRVG-VD-----  101 (818)
Q Consensus        48 l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg--------------------~~vI~~D~~~~~-~~-----  101 (818)
                      +...+.....+.+.+++|||+|+|||||||||+.|++.||                    +.+|++|+||.. ..     
T Consensus        35 ~~~~~~~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~  114 (395)
T PLN02348         35 AASSVVVALAADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEK  114 (395)
T ss_pred             hhHHHHHhhccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhc
Confidence            4455555556667899999999999999999999999986                    258999999752 11     


Q ss_pred             --cCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcC
Q 003460          102 --EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGG  178 (818)
Q Consensus       102 --~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~  178 (818)
                        ...+|+++|++.+.+.|..|+.|+.+..|.|++..+.......  .++.++||+||.+++. +.+++++|++|||+++
T Consensus       115 g~t~ldP~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~--I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~  192 (395)
T PLN02348        115 GVTALDPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPEL--IEPPKILVIEGLHPMYDERVRDLLDFSIYLDIS  192 (395)
T ss_pred             CCccCCcccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCcEE--cCCCcEEEEechhhccCccccccCcEEEEEECC
Confidence              1134678999999999999999999999999999987655433  3457899999999987 5788999999999999


Q ss_pred             HHHHHHHHHHhccCCC-cCHHHHHH---hhchhhhhccCCccccCcEEEECC
Q 003460          179 VHFSLISKVQYDIGDS-CSLDSLID---SIFPLFRKHIEPDLHHAQIRINNR  226 (818)
Q Consensus       179 ~e~~l~Rri~Rd~~~~-~s~e~~~~---~~~p~~~~~Iep~~~~ADiII~N~  226 (818)
                      .+.++.|+++||...+ .+.+++.+   .+.|.+.+||+|.+++||+||+--
T Consensus       193 ~dvrl~RRI~RD~~eRG~S~EeV~~~i~ar~pd~~~yI~pqk~~ADiVI~v~  244 (395)
T PLN02348        193 DDVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVIEVL  244 (395)
T ss_pred             HHHHHHHHHHhhHhhcCCCHHHHHHHHHhcCcchhhhcccccccCCEEEEec
Confidence            9999999999998765 46665554   458999999999999999999643

>PRK06696 uridine kinase; Validated

Probab=99.88  E-value=7.1e-22  Score=206.24  Aligned_cols=177  Identities=20%  Similarity=0.253  Sum_probs=140.8

Q ss_pred             cCCCCEEEeeeCCCCccHHHHHHHHHHHh---CC--cccccccccchhhh-hcccCCCc-----ccccHHHHHHHHHHHh
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---GC--EVVSLESYFKSEQV-KDFKYDDF-----SSLDLSLLSKNISDIR  581 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~l---g~--~vis~Ddfy~~~~~-~~~~~d~p-----~t~D~~ll~~~L~~L~  581 (818)
                      ..++|++|||+|+|||||||||+.|++.|   |.  .++|+||||.+... ...++++|     +++|+++|.+.+..+.
T Consensus        18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l   97 (223)
T PRK06696         18 NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPL   97 (223)
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhc
Confidence            45689999999999999999999999998   44  35679999998543 23344444     7899999999887743


Q ss_pred             -cCC--ceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCccc
Q 003460          582 -NGR--RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM  658 (818)
Q Consensus       582 -~g~--~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~  658 (818)
                       .+.  .+..|.||+..+..... ......+.++||+||++++.+.+.+.+|.+||++++.++++.|++.||...+|...
T Consensus        98 ~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~vviveg~~l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~~~  176 (223)
T PRK06696         98 GPNGDRQYRTASHDLKTDIPVHN-PPLLAAPNAVLIVDGTFLLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGSYE  176 (223)
T ss_pred             cCCCceeEeeeeeccccCcccCC-CceecCCCCEEEEecHHHhhhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCCch
Confidence             433  47788999988765532 22333567899999999998999999999999999999999999999988888633


Q ss_pred             ch-hhHHHhhcchhhhhcccc--CCcccEEEeCCC
Q 003460          659 SQ-NDIMMTVFPMFQQHIEPH--LVHAHLKIRNDF  690 (818)
Q Consensus       659 ~~-~~~~~~v~p~~~~~I~p~--~~~ADivI~n~~  690 (818)
                      +. ..++..+.|.+..|+.+.  +++||+||+|+-
T Consensus       177 ~~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~  211 (223)
T PRK06696        177 EAEKMYLARYHPAQKLYIAEANPKERADVVIDNSD  211 (223)
T ss_pred             HHHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence            32 567777889888887655  788999999874

>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily

Probab=99.87  E-value=5.8e-22  Score=198.09  Aligned_cols=134  Identities=24%  Similarity=0.304  Sum_probs=121.5

Q ss_pred             ccccccccccceeeccCCCCCcchhhhccCCeeeEeeeC--CEEEEEEcceeecCCCcccCceeEEEEec----cHHHHH
Q 003460          251 SAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSG--IRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGL  324 (818)
Q Consensus       251 ~~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~--~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~~L  324 (818)
                      ........|+|+||+.|+++++.++.++     |||..+  +++.+|||||...+ .+  +.+.|+|+.|    +|.++|
T Consensus        23 ~~~~~~~~q~d~Yfd~p~~~l~~~~~~L-----RiR~~~~~~~~~lT~K~~~~~~-~~--~~~~E~e~~v~~~~~~~~iL   94 (169)
T cd07890          23 GAEGGREFQEDIYFDHPDRDLAATDEAL-----RLRRMGDSGKTLLTYKGPKLDG-GP--KVREEIETEVADPEAMKEIL   94 (169)
T ss_pred             cccccceeEeEEEEcCCchhHHhCCCcE-----EEEEeCCCCcEEEEEECCCCCC-Cc--cceEEEEEecCCHHHHHHHH
Confidence            3445778999999999999999888887     999987  88999999987654 33  8999999999    899999


Q ss_pred             HhcCCceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec------CHHHHHHHHHHcCCCCC-ccchhHHHH
Q 003460          325 LDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT------NRKTVGAEALRMGINGP-WITKSYLEM  393 (818)
Q Consensus       325 ~~LGf~~~~~~~K~R~~~~~~~~~i~lD~v~~lg~~fvEiE~~------~~~~i~~~~~~Lgl~~~-~~~~sYlel  393 (818)
                      ..|||.+..+++|.|.+|.+++++|+||.|+|||. |+|||++      ..+.+.++++.||+.+. .+++||++|
T Consensus        95 ~~lg~~~~~~~~K~R~~~~~~~~~v~lD~~~~lG~-f~EiE~~~~~~~~~~~~l~~~~~~lg~~~~~~~~~sy~~~  169 (169)
T cd07890          95 ERLGFGPVGRVKKEREIYLLGQTRVHLDRVEGLGD-FVEIEVVLEDIEEAEEGLGEAAELLGLLEYDEETLSYLEL  169 (169)
T ss_pred             HHcCCceeEEEEEEEEEEEECCEEEEEEccCCCCc-eEEEEEEeCCcHHHHHHHHHHHHHcCCCccCchhhhhhcC
Confidence            99999999999999999999999999999999999 9999999      45899999999999885 499999975

This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=99.86  E-value=1.3e-21  Score=204.80  Aligned_cols=161  Identities=15%  Similarity=0.243  Sum_probs=134.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceec----ccc-----------cCCC--CCcccHHHHHHHHHhh
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV----GVD-----------EGND--LDSIDFDALVQNLQDL  121 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~----~~~-----------~~~~--~~~~d~~~l~~~L~~l  121 (818)
                      +|||+|+|||||||+++.|++.++     +.+|+.|+||+    ++.           ..+.  |+++|++.|.+.|..+
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L   80 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY   80 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence            589999999999999999998774     67899999988    111           1234  8999999999999999


Q ss_pred             hcCCccccccchhh----------hhccccccccccCCccEEEEEecccch----hhhhcCCCEEEEEEcCHHHHHHHHH
Q 003460          122 TEGKDTLIPMFDYQ----------QKNRIGSKVIKGASSGVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSLISKV  187 (818)
Q Consensus       122 ~~~~~i~~p~~d~~----------~~~~~~~~~~~~~~~~vVIvEG~~l~~----~~l~~~~D~~I~Vda~~e~~l~Rri  187 (818)
                      .+|+.+..|.|++.          .+.+..+... ..+.+++|+||.+.+.    ..+++++|++|||+++.++++.||+
T Consensus        81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~~-~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irRI  159 (277)
T cd02029          81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTPWEDL-PEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQKI  159 (277)
T ss_pred             HcCCCcccceeeccccccccccCCCCccCCcccc-cCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHHH
Confidence            99999999999773          2333333322 3567899999998433    6899999999999999999999999


Q ss_pred             HhccCCC-cCHHHHHHhh---chhhhhccCCccccCcEEEEC
Q 003460          188 QYDIGDS-CSLDSLIDSI---FPLFRKHIEPDLHHAQIRINN  225 (818)
Q Consensus       188 ~Rd~~~~-~s~e~~~~~~---~p~~~~~Iep~~~~ADiII~N  225 (818)
                      .||..+| .+.+.+++++   .|.|.+||+|.+++||+++.-
T Consensus       160 ~RD~~ERGrs~EsVi~qilrrmpdy~~yI~PQ~~~tDI~fqr  201 (277)
T cd02029         160 HRDTAERGYSAEAVMDTILRRMPDYINYICPQFSRTDINFQR  201 (277)
T ss_pred             HhhhHhhCCCHHHHHHHHHHhCchHHhhCCcccccCcEEEec
Confidence            9999888 6888888754   699999999999999999854

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=99.86  E-value=1.2e-21  Score=197.62  Aligned_cols=161  Identities=43%  Similarity=0.635  Sum_probs=135.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHh-----CCeEEeccceeccc-------ccCCCCCcccHHHHHHHHHhhhcCCcccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRVGV-------DEGNDLDSIDFDALVQNLQDLTEGKDTLIPM  131 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~L-----g~~vI~~D~~~~~~-------~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~  131 (818)
                      +|||+|++||||||+|+.|++.+     ++.+|++|+||+..       ...+.+..+|++.+.+.|..+..++.+..|.
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~   80 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI   80 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence            58999999999999999999987     46899999999743       1123445689999999999999999999999


Q ss_pred             chhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHH-HHHHHHHhccCCC-cCHHHHHHhh--chh
Q 003460          132 FDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHF-SLISKVQYDIGDS-CSLDSLIDSI--FPL  207 (818)
Q Consensus       132 ~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~-~l~Rri~Rd~~~~-~s~e~~~~~~--~p~  207 (818)
                      |++..+.+........++..+||+||++++++.+++++|++|||+++.+. ++.||+.||...+ .+.++.+.++  .|.
T Consensus        81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~~~~~~  160 (179)
T cd02028          81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMWPSVPS  160 (179)
T ss_pred             ceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhcccccC
Confidence            99999988765445667788999999999999999999999999999998 9999999998777 5777766643  566


Q ss_pred             hhhcc-CCccccCcEEEE
Q 003460          208 FRKHI-EPDLHHAQIRIN  224 (818)
Q Consensus       208 ~~~~I-ep~~~~ADiII~  224 (818)
                      ++.++ .|.++.||+|++
T Consensus       161 ~~~~~~~~~~~~ad~~~~  178 (179)
T cd02028         161 GEEFIIPPLQEAAIVMFN  178 (179)
T ss_pred             chhhcCCCchhccceecc
Confidence            66555 678899999874

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=99.86  E-value=1.7e-21  Score=196.80  Aligned_cols=156  Identities=22%  Similarity=0.282  Sum_probs=122.8

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHh-CCcccccccccchhhh------hcccCCCcccccHHHHHHHHHHHhcCCceecccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQV------KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIF  591 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~l-g~~vis~Ddfy~~~~~------~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~y  591 (818)
                      +|||+|+|||||||+|+.|++.+ ++.+||+||||++...      +..+|++|+++|+++|.+.|..|++|+.+..|.+
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~   80 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR   80 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCccc
Confidence            58999999999999999999998 6999999999998431      3358999999999999999999999987666666


Q ss_pred             cccccccCCC------------cceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCc-c
Q 003460          592 DLETGARSGF------------KELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC-F  657 (818)
Q Consensus       592 D~~~~~r~~~------------~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~-~  657 (818)
                      +....+....            .......+.++||+||.++++ +.+++++|++||++++.+++++|++.||...-.. .
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~~~~~~~~  160 (187)
T cd02024          81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTGYVTLEGF  160 (187)
T ss_pred             CccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCCccccCcc
Confidence            5554332110            112334667899999999987 7999999999999999999999999998443111 1


Q ss_pred             -cch-hhHHHhhcchhhhh
Q 003460          658 -MSQ-NDIMMTVFPMFQQH  674 (818)
Q Consensus       658 -~~~-~~~~~~v~p~~~~~  674 (818)
                       ... ..+...|+|+|.+.
T Consensus       161 w~Dp~~yf~~~v~p~y~~~  179 (187)
T cd02024         161 WPDPPGYFDGHVWPMYLKH  179 (187)
T ss_pred             cCCCCcccccccchhHHHH
Confidence             111 34556799999875

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=99.85  E-value=3.8e-21  Score=200.13  Aligned_cols=165  Identities=18%  Similarity=0.265  Sum_probs=130.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhC-------CeEEeccceecccc---------cCCCCCcccHHHHHHHHHhhhc-CCc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIG-------CTLISMENYRVGVD---------EGNDLDSIDFDALVQNLQDLTE-GKD  126 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg-------~~vI~~D~~~~~~~---------~~~~~~~~d~~~l~~~L~~l~~-~~~  126 (818)
                      +|||+|++||||||+|+.|+..+.       +.+|++|+||....         ..+.|+++|.+.+.+.|..+.. ++.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~   80 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN   80 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence            589999999999999999999882       57899999986421         2456899999999999999998 468


Q ss_pred             cccccchhhhhccccccccccCCccEEEEEecccchhh------hhcCCCEEEEEEcCHHHHHHHHHHhccC---CC---
Q 003460          127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDAR------LRSLLDIRVAVVGGVHFSLISKVQYDIG---DS---  194 (818)
Q Consensus       127 i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~------l~~~~D~~I~Vda~~e~~l~Rri~Rd~~---~~---  194 (818)
                      +..|.|++..+++........++.++||+||+++++..      +++++|++|||+++.+.+..|+..|...   .+   
T Consensus        81 v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r~  160 (220)
T cd02025          81 VKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFSD  160 (220)
T ss_pred             EEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999887654443566789999999999853      8999999999999999975555444322   11   


Q ss_pred             ----------cCHHHHH--------HhhchhhhhccCCccccCcEEEECCCC
Q 003460          195 ----------CSLDSLI--------DSIFPLFRKHIEPDLHHAQIRINNRFV  228 (818)
Q Consensus       195 ----------~s~e~~~--------~~~~p~~~~~Iep~~~~ADiII~N~~~  228 (818)
                                .+.+++.        +...|++++||.|++.+||+||..+..
T Consensus       161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~~~  212 (220)
T cd02025         161 PDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGAD  212 (220)
T ss_pred             chhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeCCC
Confidence                      1112211        134799999999999999999987743

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.84  E-value=1.4e-20  Score=194.41  Aligned_cols=167  Identities=31%  Similarity=0.533  Sum_probs=140.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhC---CeEEeccceeccc----------ccCCCCCcccHHHHHHHHHhhhcCCc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMENYRVGV----------DEGNDLDSIDFDALVQNLQDLTEGKD  126 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg---~~vI~~D~~~~~~----------~~~~~~~~~d~~~l~~~L~~l~~~~~  126 (818)
                      .++.+|||+|++|||||||++.|+..++   +.++++|+||...          ...+.+++++++.+.+.|..+..+..
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~   83 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGKA   83 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCCc
Confidence            4678999999999999999999999883   6789999997632          12345788999999999999999999


Q ss_pred             cccccchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHHHHh-
Q 003460          127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDS-  203 (818)
Q Consensus       127 i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~~~-  203 (818)
                      +..|.|++..+.+... .....+..++|+||+++++ +.+.+++|.+|||++|.++++.|++.|+...+ .+.+++.++ 
T Consensus        84 v~~p~~d~~~~~~~~~-~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~~  162 (209)
T PRK05480         84 IEIPVYDYTEHTRSKE-TIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQY  162 (209)
T ss_pred             cccCcccccccccCCC-eEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHHH
Confidence            9999999998877643 2334556799999999997 68889999999999999999999999997654 466655543 


Q ss_pred             ---hchhhhhccCCccccCcEEEECCC
Q 003460          204 ---IFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       204 ---~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                         ..|.|.++++|.+++||+||+|+.
T Consensus       163 ~~~~~~~~~~~i~~~~~~AD~vI~~~~  189 (209)
T PRK05480        163 LSTVRPMHLQFIEPSKRYADIIIPEGG  189 (209)
T ss_pred             HHhhhhhHHhhccHhhcceeEEecCCC
Confidence               468999999999999999999874

>PRK07667 uridine kinase; Provisional

Probab=99.84  E-value=2.6e-20  Score=190.13  Aligned_cols=170  Identities=18%  Similarity=0.298  Sum_probs=131.4

Q ss_pred             HHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccchhhhh-cccCCC-----cccccHHHHHHH-
Q 003460          509 ALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQVK-DFKYDD-----FSSLDLSLLSKN-  576 (818)
Q Consensus       509 ~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~~~~~-~~~~d~-----p~t~D~~ll~~~-  576 (818)
                      .+....+.+++|||+|++||||||+|+.|++.++     +.++|+||||.+.... ..++..     ..++|++.|.+. 
T Consensus         9 ~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v   88 (193)
T PRK07667          9 IMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKF   88 (193)
T ss_pred             HHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHH
Confidence            3344556779999999999999999999999873     5699999999874421 111111     235788888764 


Q ss_pred             HHHHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCc
Q 003460          577 ISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC  656 (818)
Q Consensus       577 L~~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~  656 (818)
                      +..|+.++.+.+|.||+..+.+..  .....++.+++|+||++++++.+.+.+|.+|||++|.+.+++|++.|+.    .
T Consensus        89 ~~~L~~~~~i~~P~~d~~~~~~~~--~~~~~~~~~vvIvEG~~l~~~~~~~~~d~~v~V~~~~~~~~~R~~~r~~----~  162 (193)
T PRK07667         89 FRKLQNETKLTLPFYHDETDTCEM--KKVQIPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRETRFLRESEETQ----K  162 (193)
T ss_pred             HHhhcCCCeEEEeeeccccccccc--cceecCCCCEEEEEehhhhhhhHHhhceEEEEEECCHHHHHHHHhcccH----h
Confidence            688999999999999999877653  2222355799999999998888999999999999999999999998762    2


Q ss_pred             ccchhhHHHhhcchhhhhcc---ccCCcccEEEe
Q 003460          657 FMSQNDIMMTVFPMFQQHIE---PHLVHAHLKIR  687 (818)
Q Consensus       657 ~~~~~~~~~~v~p~~~~~I~---p~~~~ADivI~  687 (818)
                      +.  .++...+.|.+..|+.   | +..||+||+
T Consensus       163 ~~--~~~~~r~~~a~~~y~~~~~~-~~~ad~i~~  193 (193)
T PRK07667        163 NL--SKFKNRYWKAEDYYLETESP-KDRADLVIK  193 (193)
T ss_pred             HH--HHHHHHhHHHHHHHHhhcCh-HhhCcEEeC
Confidence            22  3556566688888865   5 788999874

>PRK15453 phosphoribulokinase; Provisional

Probab=99.83  E-value=6.4e-20  Score=193.61  Aligned_cols=164  Identities=16%  Similarity=0.280  Sum_probs=134.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceec-c---c-----------ccCCC--CCcccHHHHHHH
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV-G---V-----------DEGND--LDSIDFDALVQN  117 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~-~---~-----------~~~~~--~~~~d~~~l~~~  117 (818)
                      .++.+|||+|+|||||||+|+.|++.++     +.+|+.|+||+ .   +           ...+.  |++.|++.|.+.
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~   82 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQL   82 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence            4568999999999999999999998774     67899999986 2   1           12334  899999999999


Q ss_pred             HHhhhcCCccccccchhhh-----hccc-----cccccccCCccEEEEEecccch----hhhhcCCCEEEEEEcCHHHHH
Q 003460          118 LQDLTEGKDTLIPMFDYQQ-----KNRI-----GSKVIKGASSGVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSL  183 (818)
Q Consensus       118 L~~l~~~~~i~~p~~d~~~-----~~~~-----~~~~~~~~~~~vVIvEG~~l~~----~~l~~~~D~~I~Vda~~e~~l  183 (818)
                      |..+..++.+..|.|++..     +.+.     +++.+ .++.++||+||.+.+.    ..++.++|++|||+++.++++
T Consensus        83 l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i-~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~  161 (290)
T PRK15453         83 FREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPL-PEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEW  161 (290)
T ss_pred             HHHHhcCCCcceeeccccccccccCCCCCCccCCceEe-cCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHH
Confidence            9999998888888776321     2222     12222 2567899999998874    578999999999999999999


Q ss_pred             HHHHHhccCCC-cCHHHHHHhh---chhhhhccCCccccCcEEEE
Q 003460          184 ISKVQYDIGDS-CSLDSLIDSI---FPLFRKHIEPDLHHAQIRIN  224 (818)
Q Consensus       184 ~Rri~Rd~~~~-~s~e~~~~~~---~p~~~~~Iep~~~~ADiII~  224 (818)
                      .|++.||..+| .+.+.+++++   +|.|.+||.|.+.+||+++.
T Consensus       162 irRI~RD~~ERGrs~EsVi~qilrrmPdy~~yI~PQ~~~tdInfq  206 (290)
T PRK15453        162 IQKIHRDTSERGYSREAVMDTILRRMPDYINYITPQFSRTHINFQ  206 (290)
T ss_pred             HHHHHhhhHhhCCCHHHHHHHHHHhCChHhhhCCCCcccCcEEEE
Confidence            99999999888 6888887753   79999999999999999774

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=99.82  E-value=5.3e-20  Score=191.31  Aligned_cols=201  Identities=19%  Similarity=0.239  Sum_probs=147.4

Q ss_pred             ccccccceecccCCCCCCc--ccccCCCcccceecccCCCCc-chhhhhHHHHHHHHHH-------H--HcCCCCEEEee
Q 003460          455 EPVLATWHFISSDPSHAGS--SVIGSSSFRDTVKLVPMPDSY-DFDRGLLLSVQAIQAL-------L--ENKGLPVIVGI  522 (818)
Q Consensus       455 ~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~i~~l-------~--~~~~~p~iIgI  522 (818)
                      ....++|+.++.+.+.+++  ++.+..++.+.+.+..+.+.| ++.+-+...+.+.+.+       .  .+...|+||||
T Consensus         8 ~~~~~~w~~~~~~~~~~lt~~e~~~~~~ln~~~~l~eV~~iylpL~~l~~~~~~~~~~~~~~~~~~l~~~~~~~pfIIgi   87 (283)
T COG1072           8 IFSREQWAALRASTPLTLTEEELKRLRGLNEPISLDEVEDIYLPLSRLLQLYVEARERLFAELLRFLGTNNQQRPFIIGI   87 (283)
T ss_pred             EechhhhhhhhhcCccccCHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEe
Confidence            4678899966777777777  444545555544443222222 1111111111111111       1  24568999999


Q ss_pred             eCCCCccHHHHHHHHHHHhC-------Ccccccccccchhh----hhccc-CCCcccccHHHHHHHHHHHhcCCc-eecc
Q 003460          523 GGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQ----VKDFK-YDDFSSLDLSLLSKNISDIRNGRR-TKVP  589 (818)
Q Consensus       523 sG~sGSGKTTla~~L~~~lg-------~~vis~Ddfy~~~~----~~~~~-~d~p~t~D~~ll~~~L~~L~~g~~-v~~P  589 (818)
                      +|+.|+||||+|+.|+..+.       +.++.||.|+.+..    .+-.+ .+-|+++|...|.+.+..+++|++ +.+|
T Consensus        88 aGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~vK~~~~~v~aP  167 (283)
T COG1072          88 AGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDVKAGKPDVFAP  167 (283)
T ss_pred             ccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHHhcCCCccccc
Confidence            99999999999999999873       66899999988743    22222 467999999999999999998877 9999


Q ss_pred             cccccccccCCCcceeeecCCcEEEEEecccch---H--hhhhcCCEEEEEEcChhHHHHHHHhcCccccCc
Q 003460          590 IFDLETGARSGFKELEVSEDCGVIIFEGVYALH---P--EIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC  656 (818)
Q Consensus       590 ~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~--~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~  656 (818)
                      .||+.+++..+. ...+..+.+|||+||++++.   |  .+.+.+|+.||||++.+.-.+|.+.|....+-.
T Consensus       168 vysh~~yD~vpd-~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl~~g~~  238 (283)
T COG1072         168 VYSHLIYDPVPD-AFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFLKFGLT  238 (283)
T ss_pred             cccccccccCCC-ceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHHhcccc
Confidence            999999998874 55566778999999999985   3  478899999999999999999999998765433

>PRK06696 uridine kinase; Validated

Probab=99.82  E-value=2.1e-19  Score=187.64  Aligned_cols=170  Identities=23%  Similarity=0.264  Sum_probs=131.0

Q ss_pred             hcCCcEEEEEeCCCCCcHHHHHHHHHHHh---CCeE--Eeccceeccccc-----CCC-----CCcccHHHHHHHHHhhh
Q 003460           58 KKGGIVTVGIGGPSGSGKTSLAEKLASVI---GCTL--ISMENYRVGVDE-----GND-----LDSIDFDALVQNLQDLT  122 (818)
Q Consensus        58 ~~~~~~iIgI~G~sGSGKSTlA~~La~~L---g~~v--I~~D~~~~~~~~-----~~~-----~~~~d~~~l~~~L~~l~  122 (818)
                      ..+++++|||+|++||||||||+.|++.|   |..+  +++|+||.+...     ...     .+++|++.|.+.+....
T Consensus        18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l   97 (223)
T PRK06696         18 NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPL   97 (223)
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhc
Confidence            45678999999999999999999999999   5444  569999885421     112     26899999999888743


Q ss_pred             -cCC--ccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCc----
Q 003460          123 -EGK--DTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC----  195 (818)
Q Consensus       123 -~~~--~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~----  195 (818)
                       .+.  .+..|.|++..+..........++..+||+||++++++.+..++|++|||+++.+.+++|++.|+...++    
T Consensus        98 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~~~~  177 (223)
T PRK06696         98 GPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGSYEE  177 (223)
T ss_pred             cCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCCchH
Confidence             332  3455678887766543333444567799999999999999999999999999999999999999954443    


Q ss_pred             CHHHHHHhhchhhhhccCCc--cccCcEEEECCC
Q 003460          196 SLDSLIDSIFPLFRKHIEPD--LHHAQIRINNRF  227 (818)
Q Consensus       196 s~e~~~~~~~p~~~~~Iep~--~~~ADiII~N~~  227 (818)
                      ....+.+++.|.++.|+.+.  +++||+||+|+.
T Consensus       178 ~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~  211 (223)
T PRK06696        178 AEKMYLARYHPAQKLYIAEANPKERADVVIDNSD  211 (223)
T ss_pred             HHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence            23445567788888887544  899999999984

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=99.82  E-value=2.6e-19  Score=187.67  Aligned_cols=183  Identities=20%  Similarity=0.238  Sum_probs=142.5

Q ss_pred             HHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccc-cccccccchhhh-hc----ccCCCcccccHHHH
Q 003460          505 QAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEV-VSLESYFKSEQV-KD----FKYDDFSSLDLSLL  573 (818)
Q Consensus       505 ~~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~v-is~Ddfy~~~~~-~~----~~~d~p~t~D~~ll  573 (818)
                      ..+..+....+++.+|||+|++|||||||++.|+..+.     +.+ +++|+||.+... ..    ..++.|.++|.+.+
T Consensus        21 ~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~  100 (229)
T PRK09270         21 RRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGL  100 (229)
T ss_pred             HHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHH
Confidence            33444445667899999999999999999999999884     235 999999987432 11    13467899999999


Q ss_pred             HHHHHHHhcCC-ceecccccccccccCCCcceeeecCCcEEEEEecccch-----HhhhhcCCEEEEEEcChhHHHHHHH
Q 003460          574 SKNISDIRNGR-RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-----PEIRKSLDLWIAVVGGVHSHLISRV  647 (818)
Q Consensus       574 ~~~L~~L~~g~-~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-----~~l~~~~D~~I~v~~~~d~rl~Rri  647 (818)
                      .+.+..++.|+ .+.+|.||+..+..... ........+++|+||.+++.     +.+.+.+|..||++++.+.++.|.+
T Consensus       101 ~~~l~~l~~~~~~i~~P~yD~~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~  179 (229)
T PRK09270        101 AALLRRLRAGDDEVYWPVFDRSLEDPVAD-AIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLV  179 (229)
T ss_pred             HHHHHHHHcCCCceecccCCcccCCCCCC-ceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHH
Confidence            99999999987 89999999998776542 22222356899999999875     3677899999999999999999999


Q ss_pred             hcCccccCcccch-hhHH-HhhcchhhhhccccCCcccEEEeCCC
Q 003460          648 QRDKSRMGCFMSQ-NDIM-MTVFPMFQQHIEPHLVHAHLKIRNDF  690 (818)
Q Consensus       648 ~Rd~~~rg~~~~~-~~~~-~~v~p~~~~~I~p~~~~ADivI~n~~  690 (818)
                      .|+. ++|.+.+. .+.+ ....|.+ .||.|.+..||+||+|+-
T Consensus       180 ~R~~-~~g~s~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~  222 (229)
T PRK09270        180 ARKL-AGGLSPEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMTA  222 (229)
T ss_pred             HHHH-hcCCCHHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEecC
Confidence            9963 46766554 2333 3456666 689999999999999863

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=99.81  E-value=1.4e-19  Score=185.19  Aligned_cols=164  Identities=32%  Similarity=0.548  Sum_probs=136.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHh---CCeEEeccceecccc----------cCCCCCcccHHHHHHHHHhhhcCCccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISMENYRVGVD----------EGNDLDSIDFDALVQNLQDLTEGKDTLIP  130 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~L---g~~vI~~D~~~~~~~----------~~~~~~~~d~~~l~~~L~~l~~~~~i~~p  130 (818)
                      +|||+|++||||||+++.|+..+   ++.++++|+||..+.          .+..+.+++++.+.+.|..+..++.+..|
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p   80 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence            58999999999999999999987   378999999986432          23456788999999999999999999999


Q ss_pred             cchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHHHH----hh
Q 003460          131 MFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLID----SI  204 (818)
Q Consensus       131 ~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~~----~~  204 (818)
                      .|++..+.+..... ...+..++|+||.+++. +.+.+.+|.+|||+++.+.++.|++.|+...+ .+.++..+    +.
T Consensus        81 ~~d~~~~~~~~~~~-~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~  159 (198)
T cd02023          81 VYDFKTHSRLKETV-TVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFV  159 (198)
T ss_pred             ccccccCcccCCce-ecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHhh
Confidence            99999988764333 45567899999999987 67888999999999999999999999997555 35544433    44


Q ss_pred             chhhhhccCCccccCcEEEECCCC
Q 003460          205 FPLFRKHIEPDLHHAQIRINNRFV  228 (818)
Q Consensus       205 ~p~~~~~Iep~~~~ADiII~N~~~  228 (818)
                      .+.+..|+++++++||+||+|+-.
T Consensus       160 ~~~~~~~i~~~~~~aD~ii~~~~~  183 (198)
T cd02023         160 KPMHEQFIEPTKRYADVIIPRGGD  183 (198)
T ss_pred             hhhHHHhCccchhceeEEECCCCC
Confidence            689999999999999999998753

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR00235 udk uridine kinase

Probab=99.80  E-value=4.4e-19  Score=183.07  Aligned_cols=168  Identities=33%  Similarity=0.543  Sum_probs=137.6

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHhC---CeEEeccceecccc----------cCCCCCcccHHHHHHHHHhhhcCC
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMENYRVGVD----------EGNDLDSIDFDALVQNLQDLTEGK  125 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg---~~vI~~D~~~~~~~----------~~~~~~~~d~~~l~~~L~~l~~~~  125 (818)
                      ++...+|||+|++|||||||++.|+..++   +.++++|+|+....          ..+.+++++.+.+.+.|..+..|.
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~   82 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGS   82 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCC
Confidence            34568999999999999999999999875   67899999875311          233567889999999999999999


Q ss_pred             ccccccchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHHHH-
Q 003460          126 DTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLID-  202 (818)
Q Consensus       126 ~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~~-  202 (818)
                      .+.+|.|++..+.+.. .....++..++|+||.+++. +.+.+.+|.+|||+++.+.++.|++.|+...+ .+.+.... 
T Consensus        83 ~v~~p~yd~~~~~~~~-~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~~  161 (207)
T TIGR00235        83 PIDVPVYDYVNHTRPK-ETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQ  161 (207)
T ss_pred             CEecccceeecCCCCC-ceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHHH
Confidence            9999999998777643 33445567899999999965 66888999999999999999999999997654 35544444 


Q ss_pred             ---hhchhhhhccCCccccCcEEEECCC
Q 003460          203 ---SIFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       203 ---~~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                         ...|.+..++++.+.+||+||+|+-
T Consensus       162 ~~~~~~~~~~~~i~~~~~~Ad~vi~~~~  189 (207)
T TIGR00235       162 YRKTVRPMYEQFVEPTKQYADLIIPEGG  189 (207)
T ss_pred             HHHhhhhhHHHhCcccccccEEEEcCCC
Confidence               3468899999999999999999864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK07667 uridine kinase; Provisional

Probab=99.79  E-value=4.8e-19  Score=180.84  Aligned_cols=168  Identities=15%  Similarity=0.230  Sum_probs=132.4

Q ss_pred             HHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceeccccc---CCCC-------CcccHHHHHHH
Q 003460           53 QELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDE---GNDL-------DSIDFDALVQN  117 (818)
Q Consensus        53 ~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~~---~~~~-------~~~d~~~l~~~  117 (818)
                      ..+.+.++.+++|||+|++||||||+|+.|++.++     +.++++|+|+.....   .+.+       ..+|.+.+.+.
T Consensus         8 ~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~   87 (193)
T PRK07667          8 NIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQK   87 (193)
T ss_pred             HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHH
Confidence            33344556679999999999999999999999873     569999999874321   1111       24677777765


Q ss_pred             -HHhhhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcC
Q 003460          118 -LQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCS  196 (818)
Q Consensus       118 -L~~l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s  196 (818)
                       +..+..++.+.+|.|++..+..... ....++..++|+||+++++..+.+++|.+|||++|.+.+++|.+.|+.   .+
T Consensus        88 v~~~L~~~~~i~~P~~d~~~~~~~~~-~~~~~~~~vvIvEG~~l~~~~~~~~~d~~v~V~~~~~~~~~R~~~r~~---~~  163 (193)
T PRK07667         88 FFRKLQNETKLTLPFYHDETDTCEMK-KVQIPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRETRFLRESEETQ---KN  163 (193)
T ss_pred             HHHhhcCCCeEEEeeecccccccccc-ceecCCCCEEEEEehhhhhhhHHhhceEEEEEECCHHHHHHHHhcccH---hH
Confidence             4678888899999999988765532 233455689999999999988999999999999999999999998762   46


Q ss_pred             HHHHHHhhchhhhhccC--CccccCcEEEE
Q 003460          197 LDSLIDSIFPLFRKHIE--PDLHHAQIRIN  224 (818)
Q Consensus       197 ~e~~~~~~~p~~~~~Ie--p~~~~ADiII~  224 (818)
                      .+.+.++++|.++.|++  .++.+||+|++
T Consensus       164 ~~~~~~r~~~a~~~y~~~~~~~~~ad~i~~  193 (193)
T PRK07667        164 LSKFKNRYWKAEDYYLETESPKDRADLVIK  193 (193)
T ss_pred             HHHHHHHhHHHHHHHHhhcChHhhCcEEeC
Confidence            67788888899999985  24889999984

>PRK07429 phosphoribulokinase; Provisional

Probab=99.79  E-value=5e-19  Score=193.76  Aligned_cols=166  Identities=23%  Similarity=0.383  Sum_probs=136.9

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHhC---CeEEeccceeccc----c----cCCCCCcccHHHHHHHHHhhhcCCcc
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMENYRVGV----D----EGNDLDSIDFDALVQNLQDLTEGKDT  127 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg---~~vI~~D~~~~~~----~----~~~~~~~~d~~~l~~~L~~l~~~~~i  127 (818)
                      ..++++|||+|++||||||+++.|+..++   +.++++|+|+...    .    ....|++.+++.+.+.+..+..++.+
T Consensus         5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I   84 (327)
T PRK07429          5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPI   84 (327)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCce
Confidence            46789999999999999999999999987   6789999996410    0    01235678888999999999999999


Q ss_pred             ccccchhhhhccccccccccCCccEEEEEecccc-hhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHHH---H
Q 003460          128 LIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLI---D  202 (818)
Q Consensus       128 ~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~-~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~---~  202 (818)
                      .+|.|++..+......  ...+.++||+||.+++ ...+++++|++|||+++.++++.|+++|+...+ .+.+++.   +
T Consensus        85 ~~P~yd~~~g~~~~~~--~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~i~  162 (327)
T PRK07429         85 LKPIYNHETGTFDPPE--YIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAEIE  162 (327)
T ss_pred             ecceeecCCCCcCCcE--ecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence            9999999988665432  2345679999999855 467889999999999999999999999997765 4555544   4


Q ss_pred             hhchhhhhccCCccccCcEEEECC
Q 003460          203 SIFPLFRKHIEPDLHHAQIRINNR  226 (818)
Q Consensus       203 ~~~p~~~~~Iep~~~~ADiII~N~  226 (818)
                      .+.|.+.+||+|.++.||+||++.
T Consensus       163 ~r~pd~~~yI~P~k~~ADiVI~~~  186 (327)
T PRK07429        163 AREPDFEAYIRPQRQWADVVIQFL  186 (327)
T ss_pred             HhCccHhhhhcccccCCCEEEEcC
Confidence            568999999999999999999987

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=99.79  E-value=7.7e-19  Score=182.66  Aligned_cols=165  Identities=20%  Similarity=0.286  Sum_probs=142.2

Q ss_pred             cccCCcccccch---hhHHHHHHHHHHHH----------------hcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----
Q 003460           32 LQSLPVHASFDH---GYYLLVKSIQELRE----------------KKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----   87 (818)
Q Consensus        32 ~~~~~~~~s~~~---~~~~l~~~i~~~~~----------------~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----   87 (818)
                      +.+++.++|+++   +|.++++.++.+..                +...+++|||+|++|+||||+|+.|+..+.     
T Consensus        33 ~~~ln~~~~l~eV~~iylpL~~l~~~~~~~~~~~~~~~~~~l~~~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~  112 (283)
T COG1072          33 LRGLNEPISLDEVEDIYLPLSRLLQLYVEARERLFAELLRFLGTNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPES  112 (283)
T ss_pred             hccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCC
Confidence            467888999876   99999998865542                235689999999999999999999999873     


Q ss_pred             --CeEEeccceecc---------cccCCCCCcccHHHHHHHHHhhhcCCc-cccccchhhhhccccccccccCCccEEEE
Q 003460           88 --CTLISMENYRVG---------VDEGNDLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSKVIKGASSGVVIV  155 (818)
Q Consensus        88 --~~vI~~D~~~~~---------~~~~~~~~~~d~~~l~~~L~~l~~~~~-i~~p~~d~~~~~~~~~~~~~~~~~~vVIv  155 (818)
                        +.+|.||.|+..         +..++.|++||..++.+.+..++.+.+ +.+|.|++..++.++......+..+++|+
T Consensus       113 ~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~  192 (283)
T COG1072         113 PKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIV  192 (283)
T ss_pred             CceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHHhcCCCccccccccccccccCCCceeecCCCCEEEE
Confidence              678999999542         345789999999999999999998766 99999999999999888888888999999


Q ss_pred             Eecccchh-----hhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcC
Q 003460          156 DGTYALDA-----RLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCS  196 (818)
Q Consensus       156 EG~~l~~~-----~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s  196 (818)
                      ||.+++..     .+.++||++||||++.+...+|.+.|-...+..
T Consensus       193 EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl~~g~~  238 (283)
T COG1072         193 EGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFLKFGLT  238 (283)
T ss_pred             echhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHHhcccc
Confidence            99999972     577999999999999999999999998766633

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=99.77  E-value=6.9e-18  Score=176.92  Aligned_cols=183  Identities=20%  Similarity=0.319  Sum_probs=143.8

Q ss_pred             hhHHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeE-Eeccceecc--------c-ccCCCCCc
Q 003460           44 GYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTL-ISMENYRVG--------V-DEGNDLDS  108 (818)
Q Consensus        44 ~~~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~v-I~~D~~~~~--------~-~~~~~~~~  108 (818)
                      .+..+++.+..+.....++.+|||+|++|||||||++.|+..+.     +.+ +++|+|+..        + ...+.+++
T Consensus        15 ~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~   94 (229)
T PRK09270         15 VHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPET   94 (229)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCC
Confidence            45557777776666667899999999999999999999998874     345 999999763        1 22456789


Q ss_pred             ccHHHHHHHHHhhhcCC-ccccccchhhhhccccccccccCCccEEEEEecccch-----hhhhcCCCEEEEEEcCHHHH
Q 003460          109 IDFDALVQNLQDLTEGK-DTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-----ARLRSLLDIRVAVVGGVHFS  182 (818)
Q Consensus       109 ~d~~~l~~~L~~l~~~~-~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-----~~l~~~~D~~I~Vda~~e~~  182 (818)
                      +|...+.+.+..+..+. .+.+|.|++..+..........+...++|+||.+++.     ..+.+.+|++|||+++.+.+
T Consensus        95 ~d~~~~~~~l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~  174 (229)
T PRK09270         95 FDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVL  174 (229)
T ss_pred             CCHHHHHHHHHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHH
Confidence            99999999999999887 8899999998877654433333456799999999975     36778999999999999999


Q ss_pred             HHHHHHhccCCCcCHHHHHHh----hchhhhhccCCccccCcEEEECCC
Q 003460          183 LISKVQYDIGDSCSLDSLIDS----IFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       183 l~Rri~Rd~~~~~s~e~~~~~----~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      +.|...|+.....+.+++.+.    ++|.+ .++++.+++||+||.|+.
T Consensus       175 ~~R~~~R~~~~g~s~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~  222 (229)
T PRK09270        175 RERLVARKLAGGLSPEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMTA  222 (229)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEecC
Confidence            999999964333455554443    45655 578899999999999984

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=99.77  E-value=1.8e-18  Score=185.49  Aligned_cols=161  Identities=25%  Similarity=0.376  Sum_probs=132.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHh---CCeEEeccceeccc----c----cCCCCCcccHHHHHHHHHhhhcCCccccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISMENYRVGV----D----EGNDLDSIDFDALVQNLQDLTEGKDTLIPMF  132 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~L---g~~vI~~D~~~~~~----~----~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~  132 (818)
                      +|||+|++|||||||++.|+..+   ++.++++|+|++..    .    ....+++.+++.+.+.+..++.++.+.+|.|
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y   80 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY   80 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence            58999999999999999999887   46799999997521    0    1123566778888899999999999999999


Q ss_pred             hhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHHHHh---hchh
Q 003460          133 DYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDS---IFPL  207 (818)
Q Consensus       133 d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~~~---~~p~  207 (818)
                      ++..+......  ...+.++||+||.+++. +.+++++|++|||+++.+.++.|+++|+...+ .+.+++.++   +.|.
T Consensus        81 ~~~~~~~~~~~--~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~r~~~  158 (273)
T cd02026          81 NHVTGLIDPPE--LIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEARKPD  158 (273)
T ss_pred             cccCCCcCCcE--EcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHhhchh
Confidence            99987654322  23446799999999765 68899999999999999999999999997765 466655544   5899


Q ss_pred             hhhccCCccccCcEEEECC
Q 003460          208 FRKHIEPDLHHAQIRINNR  226 (818)
Q Consensus       208 ~~~~Iep~~~~ADiII~N~  226 (818)
                      +.+||+|.+++||+||.+.
T Consensus       159 ~~~~I~P~~~~ADvVI~~~  177 (273)
T cd02026         159 FEAYIDPQKQYADVVIQVL  177 (273)
T ss_pred             HHHHhccccccCcEEEEcc
Confidence            9999999999999999876

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=99.77  E-value=1.1e-18  Score=176.34  Aligned_cols=147  Identities=20%  Similarity=0.266  Sum_probs=116.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHh-CCeEEeccceeccc----------ccCCCCCcccHHHHHHHHHhhhcCCccccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGV----------DEGNDLDSIDFDALVQNLQDLTEGKDTLIPMF  132 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~L-g~~vI~~D~~~~~~----------~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~  132 (818)
                      +|||+|++||||||+|+.|++.+ ++.+|++|+||+..          .+++.|+++|++.+.+.|..++.++.+..+.+
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~   80 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR   80 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCccc
Confidence            58999999999999999999998 69999999998742          35677999999999999999999886544444


Q ss_pred             hhhhhccc-------------cccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCC-----
Q 003460          133 DYQQKNRI-------------GSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGD-----  193 (818)
Q Consensus       133 d~~~~~~~-------------~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~-----  193 (818)
                      +.......             .......++.++|||||.++++ +.+++++|++|||+++.+++++|++.|+...     
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~~~~~~~~  160 (187)
T cd02024          81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTGYVTLEGF  160 (187)
T ss_pred             CccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCCccccCcc
Confidence            44332211             1123345667799999999988 7899999999999999999999999998654     


Q ss_pred             -CcCHHHHHHhhchhhhh
Q 003460          194 -SCSLDSLIDSIFPLFRK  210 (818)
Q Consensus       194 -~~s~e~~~~~~~p~~~~  210 (818)
                       ...+..+.+.++|.|.+
T Consensus       161 w~Dp~~yf~~~v~p~y~~  178 (187)
T cd02024         161 WPDPPGYFDGHVWPMYLK  178 (187)
T ss_pred             cCCCCcccccccchhHHH
Confidence             13455555667888877

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK06547 hypothetical protein; Provisional

Probab=99.76  E-value=9.7e-18  Score=167.83  Aligned_cols=153  Identities=21%  Similarity=0.178  Sum_probs=120.9

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccc
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL  593 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~  593 (818)
                      .+.+.+|+|+|++||||||+|+.|++.+++.++++|+||.+.       ++. ..+...+.+.+..  .|++...| ||+
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~-------~~~-~~~~~~l~~~~l~--~g~~~~~~-yd~   80 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGW-------HGL-AAASEHVAEAVLD--EGRPGRWR-WDW   80 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccc-------ccC-ChHHHHHHHHHHh--CCCCceec-CCC
Confidence            468999999999999999999999999999999999999742       111 1134555565555  77777788 999


Q ss_pred             cccccCCCcceeeecCCcEEEEEecccchHhhhhcCC-----EEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhc
Q 003460          594 ETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLD-----LWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVF  668 (818)
Q Consensus       594 ~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D-----~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~  668 (818)
                      ..+.+.   .+....+.++||+||.+++++.+++.+|     ++||+++|.+.|+.|++.||..       ...++..+.
T Consensus        81 ~~~~~~---~~~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~-------~~~~~~~w~  150 (172)
T PRK06547         81 ANNRPG---DWVSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARDPD-------YAPHWEMWA  150 (172)
T ss_pred             CCCCCC---CcEEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch-------hhHHHHHHH
Confidence            977654   2333456789999999999988999999     9999999999999999999943       224566677


Q ss_pred             chhhhhcc--ccCCcccEEEe
Q 003460          669 PMFQQHIE--PHLVHAHLKIR  687 (818)
Q Consensus       669 p~~~~~I~--p~~~~ADivI~  687 (818)
                      |.++.|++  +.+.+||+++.
T Consensus       151 ~~e~~~~~~~~~~~~ad~~~~  171 (172)
T PRK06547        151 AQEERHFARYDPRDVADWLGS  171 (172)
T ss_pred             HHHHHHHhcCCChhccEEEec
Confidence            88888876  33688998864

>PRK06547 hypothetical protein; Provisional

Probab=99.75  E-value=1.8e-17  Score=165.89  Aligned_cols=153  Identities=22%  Similarity=0.228  Sum_probs=122.3

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN  138 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~  138 (818)
                      ...+.+|+|+|++||||||+|+.|++.+++.++++|+||.++....    .+...+.+.+..  .|+....+ |++..+.
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~~----~~~~~l~~~~l~--~g~~~~~~-yd~~~~~   84 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGLA----AASEHVAEAVLD--EGRPGRWR-WDWANNR   84 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccccCC----hHHHHHHHHHHh--CCCCceec-CCCCCCC
Confidence            5678999999999999999999999999999999999997654321    133445555544  56666667 8887665


Q ss_pred             cccccccccCCccEEEEEecccchhhhhcCCC-----EEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhhcc-
Q 003460          139 RIGSKVIKGASSGVVIVDGTYALDARLRSLLD-----IRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHI-  212 (818)
Q Consensus       139 ~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D-----~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~~I-  212 (818)
                      +...  ....+..++|+||.+++.+.+++.+|     ++|||++|.+++++|++.||..    ....+++|.+.++.|+ 
T Consensus        85 ~~~~--~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~----~~~~~~~w~~~e~~~~~  158 (172)
T PRK06547         85 PGDW--VSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARDPD----YAPHWEMWAAQEERHFA  158 (172)
T ss_pred             CCCc--EEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch----hhHHHHHHHHHHHHHHh
Confidence            4322  23344578999999999888899999     9999999999999999999943    6677788999999999 


Q ss_pred             -CCccccCcEEEE
Q 003460          213 -EPDLHHAQIRIN  224 (818)
Q Consensus       213 -ep~~~~ADiII~  224 (818)
                       ..++.+||+|+.
T Consensus       159 ~~~~~~~ad~~~~  171 (172)
T PRK06547        159 RYDPRDVADWLGS  171 (172)
T ss_pred             cCCChhccEEEec
Confidence             477899999874

>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]

Probab=99.72  E-value=4.4e-18  Score=193.73  Aligned_cols=175  Identities=25%  Similarity=0.436  Sum_probs=156.5

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhC----------Ccccccccccch---h-----hhhcccCCCcccccHHHHHH
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG----------CEVVSLESYFKS---E-----QVKDFKYDDFSSLDLSLLSK  575 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg----------~~vis~Ddfy~~---~-----~~~~~~~d~p~t~D~~ll~~  575 (818)
                      ...|++||+.|+++|||||++..+...++          +..+++|.||+.   +     ..+.++|++|+++|.+++..
T Consensus        41 ~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~~~  120 (473)
T KOG4203|consen   41 GKEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELLYL  120 (473)
T ss_pred             CcceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccCCCCcchhhHHH
Confidence            35799999999999999999999888776          347788889986   1     12468899999999999999


Q ss_pred             HHHHHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCcccc
Q 003460          576 NISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM  654 (818)
Q Consensus       576 ~L~~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~r  654 (818)
                      .++.+++|+.+.+|.||+.++.+.+. .+....+.+++|+||+++++ .+.+++++.++|++++.+.++.|++.||+.++
T Consensus       121 ~~~~~~kg~~v~ip~y~~~~~~~~~~-~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~~  199 (473)
T KOG4203|consen  121 TLKNLKKGKAVEIPVYDFVTHSRDEE-KTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVER  199 (473)
T ss_pred             HHhcccccceeeceeeeeecccCCCC-ceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhhh
Confidence            99999999999999999999999753 34556788999999999997 78999999999999999999999999999999


Q ss_pred             Ccccch--hhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460          655 GCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRND  689 (818)
Q Consensus       655 g~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n~  689 (818)
                      |+.++.  .+|..++.|.|..||+|.+.+||++|+..
T Consensus       200 g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~  236 (473)
T KOG4203|consen  200 GRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRG  236 (473)
T ss_pred             cccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeecc
Confidence            999986  68899999999999999999999999754

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=99.68  E-value=4.7e-17  Score=163.90  Aligned_cols=155  Identities=21%  Similarity=0.257  Sum_probs=110.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-----------------CCCcccHHHHHHHHHh----h
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQD----L  121 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~~~d~~~l~~~L~~----l  121 (818)
                      ++|||||++||||||+++.|++ +|++++++|.+.+.+...+                 ..+..|...|.+.+..    +
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~   79 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL   79 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence            5899999999999999999988 9999999999866443322                 1245677776665442    2


Q ss_pred             hcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHH
Q 003460          122 TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLI  201 (818)
Q Consensus       122 ~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~  201 (818)
                      ..-+.+.+|............    .....++++|.+++++..+...||.+|+|+||.+.+++|.++|+.........++
T Consensus        80 ~~L~~iihP~I~~~~~~~~~~----~~~~~~~v~e~pLL~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~~~~~~~~~~ri  155 (180)
T PF01121_consen   80 KKLENIIHPLIREEIEKFIKR----NKSEKVVVVEIPLLFESGLEKLCDEVIVVYAPEEIRIKRLMERDGLSEEEAEARI  155 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH----CHSTSEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHHHTSTHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHh----ccCCCEEEEEcchhhhhhHhhhhceEEEEECCHHHHHHHHHhhCCCcHHHHHHHH
Confidence            222345556555544443321    1122699999999999999999999999999999999999999966666677777


Q ss_pred             HhhchhhhhccCCccccCcEEEECCC
Q 003460          202 DSIFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       202 ~~~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      +.++|..++     ++.||+||+|+.
T Consensus       156 ~~Q~~~~~k-----~~~ad~vI~N~g  176 (180)
T PF01121_consen  156 ASQMPDEEK-----RKRADFVIDNNG  176 (180)
T ss_dssp             HTS--HHHH-----HHH-SEEEE-SS
T ss_pred             HhCCCHHHH-----HHhCCEEEECCC
Confidence            888999888     799999999983

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=99.63  E-value=4.9e-16  Score=156.78  Aligned_cols=154  Identities=19%  Similarity=0.234  Sum_probs=112.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-----------------CCCcccHHHHHHHHHh----hh
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQD----LT  122 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~~~d~~~l~~~L~~----l~  122 (818)
                      +|||+|++||||||+++.|++ +|+.++++|.+.+.....+                 ..+.+|...|.+.+..    +.
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~   79 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK   79 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence            589999999999999999998 8999999999866432211                 1246777777766553    23


Q ss_pred             cCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHH
Q 003460          123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID  202 (818)
Q Consensus       123 ~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~  202 (818)
                      ..+.+.+|.+..........    .+...++|+|++++++..+...||.+|||++|.+.+++|.+.|+..........++
T Consensus        80 ~l~~i~hp~i~~~~~~~~~~----~~~~~~vive~plL~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd~~s~~~~~~r~~  155 (179)
T cd02022          80 KLEAITHPLIRKEIEEQLAE----ARKEKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERLMKRDGLSEEEAEARIA  155 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----ccCCCEEEEEehHhhcCCcHHhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            33556667766655444321    12235899999999998888999999999999999999999998543333334444


Q ss_pred             hhchhhhhccCCccccCcEEEECCC
Q 003460          203 SIFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       203 ~~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      .+.+..+     .+..||+||.|+.
T Consensus       156 ~Q~~~~~-----~~~~aD~vI~N~~  175 (179)
T cd02022         156 SQMPLEE-----KRARADFVIDNSG  175 (179)
T ss_pred             hcCCHHH-----HHHhCCEEEECcC
Confidence            4444433     3789999999985

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.62  E-value=1.2e-15  Score=156.25  Aligned_cols=157  Identities=14%  Similarity=0.130  Sum_probs=117.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC---------------CCCcccHHHHHHHHHh----h
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN---------------DLDSIDFDALVQNLQD----L  121 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~---------------~~~~~d~~~l~~~L~~----l  121 (818)
                      .|++|||+|++||||||+++.|++.+|+.++++|.+.+.+....               ..+.+|...|.+.+..    +
T Consensus         5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~   84 (204)
T PRK14733          5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAK   84 (204)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHH
Confidence            46889999999999999999999889999999999855432110               0245777666665442    2


Q ss_pred             hcCCccccccchhhhhccccccccccCCccEEEEEecccchhhh--hcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHH
Q 003460          122 TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARL--RSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDS  199 (818)
Q Consensus       122 ~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l--~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~  199 (818)
                      ..-+.+.+|............     ....++++|.+++++..+  ...||.+|+|+||.+.+++|.+.|+...+.....
T Consensus        85 ~~Le~i~HP~V~~~~~~~~~~-----~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s~~~a~~  159 (204)
T PRK14733         85 KWLEDYLHPVINKEIKKQVKE-----SDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDGKNRQQAVA  159 (204)
T ss_pred             HHHHhhhhHHHHHHHHHHHHh-----cCCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHH
Confidence            223445666655554433321     123589999999998654  5689999999999999999999998665556666


Q ss_pred             HHHhhchhhhhccCCccccCcEEEECCC
Q 003460          200 LIDSIFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       200 ~~~~~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      +++.++|..++     ++.||+||+|+.
T Consensus       160 ri~~Q~~~eek-----~~~aD~VI~N~g  182 (204)
T PRK14733        160 FINLQISDKER-----EKIADFVIDNTE  182 (204)
T ss_pred             HHHhCCCHHHH-----HHhCCEEEECcC
Confidence            77788888887     799999999984

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.62  E-value=1.1e-15  Score=156.42  Aligned_cols=156  Identities=16%  Similarity=0.158  Sum_probs=109.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-----------------CCC-cccHHHHHHHHHh----
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLD-SIDFDALVQNLQD----  120 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~-~~d~~~l~~~L~~----  120 (818)
                      .+|||+|++||||||+|+.|++.+|+.++|+|.+.+.+...+                 ..+ .+|...+.+.+..    
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~   81 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE   81 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence            579999999999999999999988999999999866432211                 123 5666666555432    


Q ss_pred             hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHH
Q 003460          121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL  200 (818)
Q Consensus       121 l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~  200 (818)
                      ...-+.+.+|...........    ......++++|.+++++..+...||.+|+|+||.+++++|.+.|+..........
T Consensus        82 ~~~l~~i~hP~i~~~~~~~~~----~~~~~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~g~s~e~~~~r  157 (195)
T PRK14730         82 RRWLENLIHPYVRERFEEELA----QLKSNPIVVLVIPLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRDGLTEEEAEAR  157 (195)
T ss_pred             HHHHHHHHhHHHHHHHHHHHH----hcCCCCEEEEEeHHhcCcchHhCCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence            111223444544433332221    1223458999999999999999999999999999999999999984433333344


Q ss_pred             HHhhchhhhhccCCccccCcEEEECCC
Q 003460          201 IDSIFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       201 ~~~~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      ++.++|...     .+..||+||+|+.
T Consensus       158 i~~Q~~~~~-----k~~~aD~vI~N~g  179 (195)
T PRK14730        158 INAQWPLEE-----KVKLADVVLDNSG  179 (195)
T ss_pred             HHhCCCHHH-----HHhhCCEEEECCC
Confidence            444455443     3789999999985

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=99.62  E-value=1.3e-15  Score=160.05  Aligned_cols=160  Identities=16%  Similarity=0.129  Sum_probs=112.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-----------------CCCcccHHHHHHHHHh----
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQD----  120 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~~~d~~~l~~~L~~----  120 (818)
                      |++|||||++||||||+++.|++.+|+++||+|.+.+.+.+.+                 ..+.+|...|.+.+..    
T Consensus         1 M~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~   80 (244)
T PTZ00451          1 MILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQA   80 (244)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHH
Confidence            5789999999999999999999888999999999865432211                 1256777777766542    


Q ss_pred             hhcCCccccccchhhhhccccc-------cccccCCccEEEEEecccchhhh-hcCCCEEEEEEcCHHHHHHHHHHhccC
Q 003460          121 LTEGKDTLIPMFDYQQKNRIGS-------KVIKGASSGVVIVDGTYALDARL-RSLLDIRVAVVGGVHFSLISKVQYDIG  192 (818)
Q Consensus       121 l~~~~~i~~p~~d~~~~~~~~~-------~~~~~~~~~vVIvEG~~l~~~~l-~~~~D~~I~Vda~~e~~l~Rri~Rd~~  192 (818)
                      +..-+.+.+|............       .........++++|.+++++..+ ...||.+|+|++|.+.+++|.+.|+..
T Consensus        81 ~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~g~  160 (244)
T PTZ00451         81 RRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRKRNGF  160 (244)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcCCeEEEEECCHHHHHHHHHHcCCC
Confidence            2223445566554433322210       01111223589999999999764 467899999999999999999999744


Q ss_pred             CCcCHHHHHHhhchhhhhccCCccccCcEEEECC
Q 003460          193 DSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNR  226 (818)
Q Consensus       193 ~~~s~e~~~~~~~p~~~~~Iep~~~~ADiII~N~  226 (818)
                      .....+..++.+++..++     +..||+||.|+
T Consensus       161 s~eea~~Ri~~Q~~~~ek-----~~~aD~VI~N~  189 (244)
T PTZ00451        161 SKEEALQRIGSQMPLEEK-----RRLADYIIEND  189 (244)
T ss_pred             CHHHHHHHHHhCCCHHHH-----HHhCCEEEECC
Confidence            444455555556666555     78999999998

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.60  E-value=2.5e-15  Score=153.69  Aligned_cols=156  Identities=22%  Similarity=0.232  Sum_probs=111.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-----------------CCCcccHHHHHHHHHh----
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQD----  120 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~~~d~~~l~~~L~~----  120 (818)
                      |.+|||+|++||||||+++.|++ +|+.++++|.+.+.....+                 ..+.+|...|.+.+..    
T Consensus         2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~   80 (194)
T PRK00081          2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA   80 (194)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence            57899999999999999999998 9999999999866432111                 1245676666665442    


Q ss_pred             hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHH
Q 003460          121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL  200 (818)
Q Consensus       121 l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~  200 (818)
                      +..-+.+.+|............    .....++++|++++++..+...||.+|+|++|.+.+++|.+.|+..........
T Consensus        81 ~~~L~~i~hP~v~~~~~~~~~~----~~~~~~vv~e~pll~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~~~s~e~~~~r  156 (194)
T PRK00081         81 RKKLEAILHPLIREEILEQLQE----AESSPYVVLDIPLLFENGLEKLVDRVLVVDAPPETQLERLMARDGLSEEEAEAI  156 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----cccCCEEEEEehHhhcCCchhhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence            2222345556554444333211    122368999999999998999999999999999999999999875433344444


Q ss_pred             HHhhchhhhhccCCccccCcEEEECCC
Q 003460          201 IDSIFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       201 ~~~~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      ++.+.+..++     ...||+||+|+.
T Consensus       157 i~~Q~~~~~~-----~~~ad~vI~N~g  178 (194)
T PRK00081        157 IASQMPREEK-----LARADDVIDNNG  178 (194)
T ss_pred             HHHhCCHHHH-----HHhCCEEEECCC
Confidence            4555555544     678999999985

>PF01928 CYTH: CYTH domain; InterPro: IPR008172 The CYTH domain is an ancient enzymatic domain that was present in the Last Universal Common Ancestor and was involved in nucleotide or organic phosphate metabolism []

Probab=99.60  E-value=4.2e-15  Score=150.45  Aligned_cols=140  Identities=22%  Similarity=0.293  Sum_probs=109.7

Q ss_pred             ccccccccccccceeeccCCCCCcchhhhccCCeeeEeee-CCEEEEEEcceeecCCC----cccCceeEEEEec----c
Q 003460          249 SISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQS-GIRYYLSIGDQRIVDKN----FIIRPKAEFEVGR----M  319 (818)
Q Consensus       249 ~~~~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~-~~~~~lt~Kg~~~~~~~----~~~k~r~E~ev~v----~  319 (818)
                      .++.+.....+.|+|||.|.++++.++.++     |||.. +++..+|||+|...+..    +.+. |.|+|..+    .
T Consensus        25 ~~~~~~~~~~~~d~Y~dt~~~~L~~~~~~l-----RiR~~~~~~~~lTlK~~~~~~~~~e~~~~~~-r~e~e~~i~~~~~   98 (185)
T PF01928_consen   25 LGAEFPKEEHQTDTYFDTPDRDLRKAGIAL-----RIRRENGDGWYLTLKGPGSDGPREEIEFEVS-REEYEAPISDAEE   98 (185)
T ss_dssp             CTEEEEEEEEEEEEEEEETTTHHHHTTSEE-----EEEEETTTEEEEEEEEESSSSSEEEEEEEES-HHCCEEEHSHHHH
T ss_pred             hccccCeEEEEEEEEEeCCChhHHhCCcEE-----EEEeecCCccEEEEEccCccCcccccceeec-chhhhccccchHH
Confidence            345667778899999999999988777666     99976 77777999988765430    0001 33333333    5


Q ss_pred             HHHHHHhcCCceeEEEEEEEEEEEeCCEEEEEeccCCC-CCCeEEEEec--CHHH-------HHHHHHHcCCCCCc-cch
Q 003460          320 TLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTL-DETFMVLRGT--NRKT-------VGAEALRMGINGPW-ITK  388 (818)
Q Consensus       320 ~~~~L~~LGf~~~~~~~K~R~~~~~~~~~i~lD~v~~l-g~~fvEiE~~--~~~~-------i~~~~~~Lgl~~~~-~~~  388 (818)
                      +.++|..+||.+.+.++|.|+.|.++++.|+||+++++ |. |+|||..  +.+.       +.+++..||++... +++
T Consensus        99 ~~~~l~~l~l~~~~~~~k~R~~~~~~~~~v~lD~~~~~~~~-~~EiE~~~~~~~~~~~~~~~i~~~~~~l~~~~~s~~~r  177 (185)
T PF01928_consen   99 MREILEALGLRPVARIEKKRRSYRLEGVEVELDEVDGLPGT-FLEIEIESEDEEDLKEAAEEILALLNELGISENSKIER  177 (185)
T ss_dssp             HHHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTTEE-EEEEEEEESSHHHHHHHHHHHHHHHHHTTEEGGGBHHS
T ss_pred             HHHHHHHhcCceeEEEEEEEEEEEECCEEEEEEEEecceEE-EEEEEEcCCCHhHHHHHHHHHHHHhhhcCCCccchHHH
Confidence            89999999999999999999999999999999999999 87 9999998  3444       34455569998855 999


Q ss_pred             hHHHHHH
Q 003460          389 SYLEMVL  395 (818)
Q Consensus       389 sYlel~l  395 (818)
                      +|++|+-
T Consensus       178 ~y~~l~~  184 (185)
T PF01928_consen  178 SYLELLK  184 (185)
T ss_dssp             HHHHHCH
T ss_pred             HHHHhhc
Confidence            9999863

It is found in a variety of enzymes, including thiamine-triphosphatase and the CyaB-like adenlyl cyclases []. Structurally, this domain consists mainly of antiparallel beta sheets that form a wide barrel with a channel running through it.; GO: 0006796 phosphate-containing compound metabolic process; PDB: 2DC4_B 3SY3_A 3TJ7_D 3N10_A 3N0Z_A 3N0Y_A 2FJT_A 2GFG_A 2EEN_A 2ACA_B ....

>cd07762 CYTH-like_Pase_1 Uncharacterized subgroup 1 of the CYTH-like superfamily

Probab=99.59  E-value=6.2e-15  Score=148.65  Aligned_cols=119  Identities=14%  Similarity=-0.021  Sum_probs=105.5

Q ss_pred             ccccccceeeccCCCCCcchhhhccCCeeeEeeeCCEEEEEEcceeecCCCcccCceeEEEEec----------------
Q 003460          255 GNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----------------  318 (818)
Q Consensus       255 ~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----------------  318 (818)
                      ....|.|+|||+|+++|+.+++++     |||..++++.+|||||..       +.|.|+|+.+                
T Consensus        25 ~~~~q~n~Yfdtp~~~l~~~~~aL-----RiR~~~~~~~~TlK~~~~-------~~r~E~e~~l~~~~~~~~~~~~~~~~   92 (180)
T cd07762          25 DFFKQTNYYFDTPDFALKKKHSAL-----RIREKEGKAELTLKVPQE-------VGLLETNQPLTLEEAEKLIKGGTLPE   92 (180)
T ss_pred             CcEEEEEEEEeCCCHHHHhCCcEE-----EEEeeCCeEEEEEeeCCC-------CCCcEEeecCCHHHHHHHhccccCCc
Confidence            446799999999999999999999     999999999999998873       5789999998                


Q ss_pred             -cHHHHHHhcCCce-----eEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec--CH----HHHHHHHHHcCCCCCc
Q 003460          319 -MTLGGLLDLGYSV-----VASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR----KTVGAEALRMGINGPW  385 (818)
Q Consensus       319 -~~~~~L~~LGf~~-----~~~~~K~R~~~~~~~~~i~lD~v~~lg~~fvEiE~~--~~----~~i~~~~~~Lgl~~~~  385 (818)
                       .+..+|..|||.+     ++.++|.|..|.+++..+|||++.++|..++|||..  +.    +.+.++++.||+....
T Consensus        93 ~~~~~~L~~lg~~~~~l~~~~~~~t~R~~~~~~~~~l~LD~~~~lg~~d~ElE~e~~~~~~~~~~~~~ll~~~gi~~~~  171 (180)
T cd07762          93 GEILDKLKELGIDPSELKLFGSLTTIRAEIPYEGGLLVLDHSLYLGITDYELEYEVDDYEAGKKAFLELLKQYNIPYRP  171 (180)
T ss_pred             hHHHHHHHHhCCCcccEEEEeeEEEEEEEEEeCCEEEEEeccEeCCCeeEEEEEEeCCHHHHHHHHHHHHHHcCCCccc
Confidence             2779999999986     999999999999999999999999999933999876  32    6789999999998754

Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup

>cd07758 ThTPase Thiamine Triphosphatase

Probab=99.58  E-value=8.6e-15  Score=149.55  Aligned_cols=123  Identities=13%  Similarity=0.090  Sum_probs=103.7

Q ss_pred             cccccccccceeeccCCCCCcchhhhccCCeeeEeeeCCEEEEEEcceee---cCCCcccCceeEEEEec---c------
Q 003460          252 AFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRI---VDKNFIIRPKAEFEVGR---M------  319 (818)
Q Consensus       252 ~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~~~~~lt~Kg~~~---~~~~~~~k~r~E~ev~v---~------  319 (818)
                      .+.....++|+|||+|+++++.+|+++     |+|..  ..+|++|++..   +...   +.++|+++.+   .      
T Consensus        25 ~~~~~~~~~d~YfDtp~~~l~~~~~~L-----RiR~~--~~~lk~~~~~~~~~~~~~---~~~~E~~~~~~~~~~v~~~~   94 (196)
T cd07758          25 ELLGRRTFHDTYYDTPDNTLSLNDVWL-----RQRNG--QWELKIPPGGDPPTAGAN---TRYEELTGEAAIAAALRKLL   94 (196)
T ss_pred             CCCceEEEeeEEEeCCChhHHhCCcEE-----EEECC--eEEEEecCCCCCCCCCCc---ceEEecccHHHHHHHHHHhc
Confidence            566788899999999999999999988     99963  67788886554   2333   8999998888   1      


Q ss_pred             ---------HHHHHHhcCCceeEEEEEEEEEEEeC-CEEEEEeccCCCCCCeEEEEec--C---H-------HHHHHHHH
Q 003460          320 ---------TLGGLLDLGYSVVASYKRASTYVVYG-NLSVSFETIDTLDETFMVLRGT--N---R-------KTVGAEAL  377 (818)
Q Consensus       320 ---------~~~~L~~LGf~~~~~~~K~R~~~~~~-~~~i~lD~v~~lg~~fvEiE~~--~---~-------~~i~~~~~  377 (818)
                               |.++|..|||.++++++|.|++|+++ +++|+||+++ +|..|+|||.+  +   +       +.+.++++
T Consensus        95 ~~~~~~~~~~~~~L~~lgf~~~~~~~k~R~~y~~~~g~~v~LD~~~-~G~~~~EiE~~v~~~~~~~~~~~a~~~i~~~~~  173 (196)
T cd07758          95 GGALPSAGGLGDELANLGLREFASFVTKRESWKLDGAFRVDLDRTD-FGYSVGEVELLVEEEDNEAEVPAALAKIDELIS  173 (196)
T ss_pred             CCCCCcchhHHHHHhhCCCeEEEEEEEEEEEEEcCCCcEEEEeccc-CCcceEEEEEEEecccchhhHHHHHHHHHHHHH
Confidence                     34799999999999999999999999 9999999999 77779999986  4   2       66899999


Q ss_pred             HcCCCCCc
Q 003460          378 RMGINGPW  385 (818)
Q Consensus       378 ~Lgl~~~~  385 (818)
                      +||+...+
T Consensus       174 ~lg~~~~~  181 (196)
T cd07758         174 ALMERYLW  181 (196)
T ss_pred             HhCCCccc
Confidence            99998843

ThTPase is a soluble cytosolic enzyme which converts thiamine triphosphate (ThTP) to thiamine diphosphate. This catalytic activity depends on a divalent metal cofactor, for example Mg++. ThTPase regulates the intracellular concentration of ThTP, maintaining it at a low concentration in vivo. ThTP acts as a messenger in cell signaling in response to cellular stress, and in addition, can phosphorylate proteins in certain tissues. There is another class of membrane-associated enzymes in animal tissues which also convert ThTP to thiamine diphosphate, however they do not belong to this subgroup. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=99.57  E-value=4.7e-15  Score=146.90  Aligned_cols=159  Identities=18%  Similarity=0.196  Sum_probs=123.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCC-----------------CcccHHHHHHHHHh----
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDL-----------------DSIDFDALVQNLQD----  120 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~-----------------~~~d~~~l~~~L~~----  120 (818)
                      |++||+||++||||||+++.+. .+|+++||+|.+.+...+.+.|                 +.+|.+.+-+.+..    
T Consensus         1 M~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~   79 (225)
T KOG3220|consen    1 MLIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK   79 (225)
T ss_pred             CeEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence            6899999999999999999997 6999999999987754443332                 34555555554331    


Q ss_pred             hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHH
Q 003460          121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL  200 (818)
Q Consensus       121 l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~  200 (818)
                      ....+.+.+|.+.+..-.....  .-....+++++|-+++|+..+.+++-.+|.|.||.+.+++|.+.||...+.+.+..
T Consensus        80 r~~Ln~IthP~Ir~em~ke~~~--~~l~G~r~ivlDiPLLFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~dAe~R  157 (225)
T KOG3220|consen   80 RQALNKITHPAIRKEMFKEILK--LLLRGYRVIVLDIPLLFEAKLLKICHKTVVVTCDEELQLERLVERDELSEEDAENR  157 (225)
T ss_pred             HHHHHhcccHHHHHHHHHHHHH--HHhcCCeEEEEechHHHHHhHHhheeeEEEEEECcHHHHHHHHHhccccHHHHHHH
Confidence            1123456667766665554432  23456789999999999998999999999999999999999999996555677777


Q ss_pred             HHhhchhhhhccCCccccCcEEEECCCC
Q 003460          201 IDSIFPLFRKHIEPDLHHAQIRINNRFV  228 (818)
Q Consensus       201 ~~~~~p~~~~~Iep~~~~ADiII~N~~~  228 (818)
                      .+.++|...+     ...||+||+|++.
T Consensus       158 l~sQmp~~~k-----~~~a~~Vi~Nng~  180 (225)
T KOG3220|consen  158 LQSQMPLEKK-----CELADVVIDNNGS  180 (225)
T ss_pred             HHhcCCHHHH-----HHhhheeecCCCC
Confidence            8888999888     8999999999964

>PLN02422 dephospho-CoA kinase

Probab=99.56  E-value=6.5e-15  Score=153.48  Aligned_cols=158  Identities=18%  Similarity=0.106  Sum_probs=113.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccC-----------------CCCCcccHHHHHHHHHh----
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG-----------------NDLDSIDFDALVQNLQD----  120 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~-----------------~~~~~~d~~~l~~~L~~----  120 (818)
                      |.+|||+|++||||||+++.|++ +|+.++++|.+.+.+.+.                 ...+.+|...|.+.+..    
T Consensus         1 M~~igltG~igsGKstv~~~l~~-~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~   79 (232)
T PLN02422          1 MRVVGLTGGIASGKSTVSNLFKS-SGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSK   79 (232)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-CCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHH
Confidence            35799999999999999999985 899999999985533221                 12356777777666542    


Q ss_pred             hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHH
Q 003460          121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL  200 (818)
Q Consensus       121 l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~  200 (818)
                      +..-+.+.+|.............  ......++++|.+++++..+...||.+|+|++|.+.+++|.+.|+..........
T Consensus        80 ~~~Le~IlHP~V~~~~~~~~~~~--~~~~~~~vv~eipLL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~g~s~eea~~R  157 (232)
T PLN02422         80 RQLLNRLLAPYISSGIFWEILKL--WLKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQLERLMARDGLSEEQARNR  157 (232)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHH--HhcCCCEEEEEehhhhhcchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence            22234455666544333222111  1122458999999999998889999999999999999999999985443444445


Q ss_pred             HHhhchhhhhccCCccccCcEEEECCC
Q 003460          201 IDSIFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       201 ~~~~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      ++.+.|...+     .+.||+||+|+.
T Consensus       158 i~~Q~~~eek-----~~~AD~VI~N~g  179 (232)
T PLN02422        158 INAQMPLDWK-----RSKADIVIDNSG  179 (232)
T ss_pred             HHHcCChhHH-----HhhCCEEEECCC
Confidence            5566776555     688999999995

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.56  E-value=1.1e-14  Score=149.62  Aligned_cols=158  Identities=20%  Similarity=0.204  Sum_probs=111.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccC-----------------CCCCcccHHHHHHHHHh----
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG-----------------NDLDSIDFDALVQNLQD----  120 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~-----------------~~~~~~d~~~l~~~L~~----  120 (818)
                      |++|||+|++||||||+++.|++ +|+++|++|.+.+.+...                 ...+.+|...|.+.+..    
T Consensus         1 m~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~   79 (200)
T PRK14734          1 MLRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQ   79 (200)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHH
Confidence            46899999999999999999987 799999999874432211                 11256677666665442    


Q ss_pred             hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHH
Q 003460          121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL  200 (818)
Q Consensus       121 l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~  200 (818)
                      +..-+.+.+|............  .......++++|.+++++..+...||.+|||++|.+++++|.+.|+..........
T Consensus        80 ~~~le~i~hP~v~~~~~~~~~~--~~~~~~~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~g~s~e~~~~r  157 (200)
T PRK14734         80 TALLNAITHPRIAEETARRFNE--ARAQGAKVAVYDMPLLVEKGLDRKMDLVVVVDVDVEERVRRLVEKRGLDEDDARRR  157 (200)
T ss_pred             HHHHHHhhCHHHHHHHHHHHHH--HHhcCCCEEEEEeeceeEcCccccCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence            2222345556554433332211  11123468999999999988888999999999999999999999974333344455


Q ss_pred             HHhhchhhhhccCCccccCcEEEECCC
Q 003460          201 IDSIFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       201 ~~~~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      ++.+++.+.+     +..||++|+|+.
T Consensus       158 i~~Q~~~~~k-----~~~ad~vI~N~g  179 (200)
T PRK14734        158 IAAQIPDDVR-----LKAADIVVDNNG  179 (200)
T ss_pred             HHhcCCHHHH-----HHhCCEEEECcC
Confidence            5566776665     589999999985

>PRK08233 hypothetical protein; Provisional

Probab=99.53  E-value=6.4e-14  Score=140.85  Aligned_cols=150  Identities=18%  Similarity=0.259  Sum_probs=110.3

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhC-Ccccccccccchhhh---hcc--cCCCcccccHHHHHHHHHHHhcCCceecc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVG-CEVVSLESYFKSEQV---KDF--KYDDFSSLDLSLLSKNISDIRNGRRTKVP  589 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg-~~vis~Ddfy~~~~~---~~~--~~d~p~t~D~~ll~~~L~~L~~g~~v~~P  589 (818)
                      ++.+|+|+|++||||||+|+.|+..++ +.++++|+|+.+...   ...  .......++++.+.+.+..+.++.     
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----   76 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKS-----   76 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCC-----
Confidence            368999999999999999999999996 678889999764211   110  011224567777777776654421     


Q ss_pred             cccccccccCCCcceeeecCCcEEEEEecccc-hHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCc-ccc--hhhHHH
Q 003460          590 IFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC-FMS--QNDIMM  665 (818)
Q Consensus       590 ~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~-~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~-~~~--~~~~~~  665 (818)
                                         ..++||+||.+.. ++.+...+|+.||++++.++++.|++.|+...... ...  ...|..
T Consensus        77 -------------------~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~  137 (182)
T PRK08233         77 -------------------NVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLN  137 (182)
T ss_pred             -------------------CceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence                               1268899998765 47888899999999999999999999997543221 121  145666


Q ss_pred             hhcchhhhhccccCCcccEEEeCC
Q 003460          666 TVFPMFQQHIEPHLVHAHLKIRND  689 (818)
Q Consensus       666 ~v~p~~~~~I~p~~~~ADivI~n~  689 (818)
                      .++|.|.+++++....|+++|++.
T Consensus       138 ~~~~~y~~~~~~~~~~~~~vId~~  161 (182)
T PRK08233        138 YARPLYLEALHTVKPNADIVLDGA  161 (182)
T ss_pred             HHHHHHHHHhhcCccCCeEEEcCC
Confidence            788999998888777899998764

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=99.52  E-value=2.2e-14  Score=142.26  Aligned_cols=160  Identities=19%  Similarity=0.251  Sum_probs=114.0

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh-CCcccccccccchhhhh------cccCCCcccccHHHHHHHHHHHhcCCc-ee
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQVK------DFKYDDFSSLDLSLLSKNISDIRNGRR-TK  587 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l-g~~vis~Ddfy~~~~~~------~~~~d~p~t~D~~ll~~~L~~L~~g~~-v~  587 (818)
                      +.+||||+|.+.|||||||+.|+..| |+.+||.||||++.+..      -.+|+.++++|++++.+.+.....+.. ..
T Consensus         3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~   82 (225)
T KOG3308|consen    3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP   82 (225)
T ss_pred             eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence            46899999999999999999999999 58899999999995531      246889999999999998887665532 11


Q ss_pred             ccc---ccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccchhhH
Q 003460          588 VPI---FDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDI  663 (818)
Q Consensus       588 ~P~---yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~  663 (818)
                      .++   .+....+.....-........++|+||.+++. +.+.+.+|..|++..+.+++..||-.|-    ++.....-|
T Consensus        83 ~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~~Rt----~y~p~~tgy  158 (225)
T KOG3308|consen   83 EAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRREART----YYPPDDTGY  158 (225)
T ss_pred             hHhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhcccc----cCCCCCCcc
Confidence            111   00000000000001123456899999999986 8888999999999999999988887664    444433334


Q ss_pred             HH-hhcchhhhhccccC
Q 003460          664 MM-TVFPMFQQHIEPHL  679 (818)
Q Consensus       664 ~~-~v~p~~~~~I~p~~  679 (818)
                      .. .++|.|.++.+..+
T Consensus       159 fd~~~~P~Y~~~~~~~~  175 (225)
T KOG3308|consen  159 FDPVVWPHYEKNFEEAR  175 (225)
T ss_pred             ccCccchHHHHHHHHHH
Confidence            44 48899888866443

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=99.52  E-value=4.1e-14  Score=146.27  Aligned_cols=160  Identities=18%  Similarity=0.228  Sum_probs=107.0

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccC-------------------CCCC--cccHHHHHHHH
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG-------------------NDLD--SIDFDALVQNL  118 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~-------------------~~~~--~~d~~~l~~~L  118 (818)
                      +.+++|||+|++||||||+++.|++ +|+.++++|.+.+.+...                   +..+  .+|...+.+.+
T Consensus         3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~v   81 (208)
T PRK14731          3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVV   81 (208)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHH
Confidence            4468999999999999999999987 899999999874432211                   0011  25655554443


Q ss_pred             Hh----hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC
Q 003460          119 QD----LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS  194 (818)
Q Consensus       119 ~~----l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~  194 (818)
                      ..    +..-+.+.+|............  .......++++|++++++..+...||.+|+|++|.+++++|.+.|+....
T Consensus        82 f~~~~~~~~l~~i~hp~i~~~~~~~i~~--~~~~~~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R~~~s~  159 (208)
T PRK14731         82 FSDPEKLGALNRLIHPKVFAAFQRAVDR--AARRGKRILVKEAAILFESGGDAGLDFIVVVAADTELRLERAVQRGMGSR  159 (208)
T ss_pred             hCCHHHHHHHHHHHCHHHHHHHHHHHHH--HHhcCCCEEEEEeeeeeecCchhcCCeEEEEECCHHHHHHHHHHcCCCCH
Confidence            31    2222334455544333322211  11123468999999999988888899999999999999999999975433


Q ss_pred             cCHHHHHHhhchhhhhccCCccccCcEEEECCC
Q 003460          195 CSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       195 ~s~e~~~~~~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      ......++.+.+...+     .+.||++|+|+.
T Consensus       160 e~~~~Ri~~q~~~~~~-----~~~ad~vI~N~g  187 (208)
T PRK14731        160 EEIRRRIAAQWPQEKL-----IERADYVIYNNG  187 (208)
T ss_pred             HHHHHHHHHcCChHHH-----HHhCCEEEECCC
Confidence            3334444445555444     357999999985

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=99.51  E-value=2.1e-14  Score=146.91  Aligned_cols=154  Identities=18%  Similarity=0.207  Sum_probs=108.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-----------------CCCcccHHHHHHHHHh----hh
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQD----LT  122 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~~~d~~~l~~~L~~----l~  122 (818)
                      +|||+|++||||||+++.|++ +|+.++++|.+.+.+.+.+                 ..+..|...|.+.+..    +.
T Consensus         1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~   79 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK   79 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence            489999999999999999976 7999999999855332211                 1255677766665442    22


Q ss_pred             cCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHH
Q 003460          123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID  202 (818)
Q Consensus       123 ~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~  202 (818)
                      .-+.+.+|............    .....++|+|.+++++..+...||.+|||++|.+.+++|.+.|+..........++
T Consensus        80 ~L~~i~hP~v~~~~~~~~~~----~~~~~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~g~s~e~a~~ri~  155 (196)
T PRK14732         80 ALNELIHPLVRKDFQKILQT----TAEGKLVIWEVPLLFETDAYTLCDATVTVDSDPEESILRTISRDGMKKEDVLARIA  155 (196)
T ss_pred             HHHHHhhHHHHHHHHHHHHH----HhcCCcEEEEeeeeeEcCchhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            23345566655444333211    11235899999999998888999999999999999999999997543333333344


Q ss_pred             hhchhhhhccCCccccCcEEEECCC
Q 003460          203 SIFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       203 ~~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      .+.|..+     .+..||+||.|+.
T Consensus       156 ~Q~~~~~-----k~~~aD~vI~N~~  175 (196)
T PRK14732        156 SQLPITE-----KLKRADYIVRNDG  175 (196)
T ss_pred             HcCCHHH-----HHHhCCEEEECCC
Confidence            4444443     3789999999985

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=99.51  E-value=2.2e-14  Score=146.60  Aligned_cols=156  Identities=23%  Similarity=0.259  Sum_probs=109.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-----------C------CCcccHHHHHHHHHh----
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------D------LDSIDFDALVQNLQD----  120 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------~------~~~~d~~~l~~~L~~----  120 (818)
                      +.+|||||++||||||+|+.+++ +|++++++|++.+.+.+.+           .      -+.+|...|.+.+..    
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~   80 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA   80 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence            68999999999999999999999 9999999999866332221           1      123444444433221    


Q ss_pred             hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHH
Q 003460          121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL  200 (818)
Q Consensus       121 l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~  200 (818)
                      ....+.+.+|....... ..    .......++++|-+++++......+|.+|.|+||.+++++|.++|+...+...+..
T Consensus        81 ~~~Le~i~hPli~~~~~-~~----~~~~~~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~~~~~  155 (201)
T COG0237          81 RLKLEKILHPLIRAEIK-VV----IDGARSPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEEDAEAR  155 (201)
T ss_pred             HHHHHHhhhHHHHHHHH-HH----HHHhhCCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHH
Confidence            11112233444333322 11    11112228999999999877777799999999999999999999994444566667


Q ss_pred             HHhhchhhhhccCCccccCcEEEECCCC
Q 003460          201 IDSIFPLFRKHIEPDLHHAQIRINNRFV  228 (818)
Q Consensus       201 ~~~~~p~~~~~Iep~~~~ADiII~N~~~  228 (818)
                      ...+.+..++     ...||+|++|+..
T Consensus       156 ~~~Q~~~~ek-----~~~ad~vi~n~~~  178 (201)
T COG0237         156 LASQRDLEEK-----LALADVVIDNDGS  178 (201)
T ss_pred             HHhcCCHHHH-----HhhcCChhhcCCC
Confidence            7777888887     6899999999963

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=99.51  E-value=5e-14  Score=158.91  Aligned_cols=157  Identities=17%  Similarity=0.203  Sum_probs=104.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccC-----------------CCCCcccHHHHHHHHHh----
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG-----------------NDLDSIDFDALVQNLQD----  120 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~-----------------~~~~~~d~~~l~~~L~~----  120 (818)
                      |++|||+|++||||||+++.|++ +|+.+||+|.+.+.+...                 +..+.+|...|.+.+..    
T Consensus         1 m~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~   79 (395)
T PRK03333          1 MLRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEA   79 (395)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHH
Confidence            46799999999999999999987 899999999985542221                 11256777777665442    


Q ss_pred             hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHH
Q 003460          121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL  200 (818)
Q Consensus       121 l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~  200 (818)
                      +..-+.+.+|.+........    ...+...++++|.+++++..+...||.+|||++|.+.+++|...|+..........
T Consensus        80 ~~~le~i~hP~I~~~i~~~i----~~~~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri~Rl~~rRg~s~~~a~~r  155 (395)
T PRK03333         80 RAVLNGIVHPLVGARRAELI----AAAPEDAVVVEDIPLLVESGMAPLFHLVVVVDADVEVRVRRLVEQRGMAEADARAR  155 (395)
T ss_pred             HHHHHHhhhHHHHHHHHHHH----HhcCCCCEEEEEeeeeecCCchhhCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHH
Confidence            11222344454433222211    11233456777788888888889999999999999999999888653222222233


Q ss_pred             HHhhchhhhhccCCccccCcEEEECCCC
Q 003460          201 IDSIFPLFRKHIEPDLHHAQIRINNRFV  228 (818)
Q Consensus       201 ~~~~~p~~~~~Iep~~~~ADiII~N~~~  228 (818)
                      +..+.+...+     ...||++|+|+..
T Consensus       156 i~~Q~~~e~k-----~~~AD~vIdN~~s  178 (395)
T PRK03333        156 IAAQASDEQR-----RAVADVWLDNSGT  178 (395)
T ss_pred             HHhcCChHHH-----HHhCCEEEECCCC
Confidence            3333443333     7889999999853

>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]

Probab=99.50  E-value=5.6e-14  Score=141.32  Aligned_cols=171  Identities=15%  Similarity=0.188  Sum_probs=136.5

Q ss_pred             CccccccC-CcccccchhhHHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-------------CeEEec
Q 003460           28 SPSILQSL-PVHASFDHGYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-------------CTLISM   93 (818)
Q Consensus        28 ~~~~~~~~-~~~~s~~~~~~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg-------------~~vI~~   93 (818)
                      .+...|.. ++..++++.|...++++.     ++...++|++|++||||||++.+++++..             +.++.|
T Consensus        89 ~~~~~qv~~~D~s~~de~y~~~~e~L~-----~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPM  163 (323)
T KOG2702|consen   89 EMIENQVLFKDHSEDDEFYPVKYEALT-----SNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPM  163 (323)
T ss_pred             HHHHhcccccCcchhhhhhHHHHHHhc-----ccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecc
Confidence            33444444 444556667777777665     45668899999999999999999988542             356999


Q ss_pred             cceecc-------------cccCCCCCcccHHHHHHHHHhhh--cCCccccccchhhhhccccccccccCCccEEEEEec
Q 003460           94 ENYRVG-------------VDEGNDLDSIDFDALVQNLQDLT--EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGT  158 (818)
Q Consensus        94 D~~~~~-------------~~~~~~~~~~d~~~l~~~L~~l~--~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~  158 (818)
                      |.|+..             ...++.|.+||.+.+.+.+..++  ...+++.|.|++..++++.......+..++||+||.
T Consensus       164 DGFHlsr~~LD~f~dP~~AharRGapwTFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGn  243 (323)
T KOG2702|consen  164 DGFHLSRRCLDLFKDPQTAHARRGAPWTFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGN  243 (323)
T ss_pred             cchhhhHHHHHhhcChHHHHhhcCCCcccCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEecc
Confidence            999542             23467789999999999888777  456799999999999999998988999999999999


Q ss_pred             ccch-----hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC--cCHHHHHHh
Q 003460          159 YALD-----ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDS  203 (818)
Q Consensus       159 ~l~~-----~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~--~s~e~~~~~  203 (818)
                      |++.     ..+.+.+|.++|++.+.+...+|...|....+  .+.++...+
T Consensus       244 YlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~RVa~RHl~sGl~~t~~ea~er  295 (323)
T KOG2702|consen  244 YLLLDQENWKDIYKTLDDKYKIDVDYEAAEERVAKRHLQSGLVTTIAEARER  295 (323)
T ss_pred             EEEecCccHHHHHHHhhhheeccccHHHHHHHHHHHhhcccccCCHHHHHhh
Confidence            9986     46678889999999999999999999998877  566555543

>PRK08233 hypothetical protein; Provisional

Probab=99.49  E-value=2.8e-13  Score=136.17  Aligned_cols=142  Identities=18%  Similarity=0.356  Sum_probs=99.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhC-CeEEeccceeccccc---------CCCCCcccHHHHHHHHHhhhcCCcccccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIG-CTLISMENYRVGVDE---------GNDLDSIDFDALVQNLQDLTEGKDTLIPM  131 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg-~~vI~~D~~~~~~~~---------~~~~~~~d~~~l~~~L~~l~~~~~i~~p~  131 (818)
                      .++|+|+|++||||||+|+.|++.++ +.+++.|.++.....         +...+.++.+.+.+.+..+..+       
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------   75 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAK-------   75 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcC-------
Confidence            58999999999999999999999996 778889988643211         1111233444443333332211       


Q ss_pred             chhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC--cC----HHHHHHhh
Q 003460          132 FDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS--CS----LDSLIDSI  204 (818)
Q Consensus       132 ~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~--~s----~e~~~~~~  204 (818)
                                      ....+||+||++... +.+...+|++|||++|.++++.|++.|+....  ..    ........
T Consensus        76 ----------------~~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~  139 (182)
T PRK08233         76 ----------------SNVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYA  139 (182)
T ss_pred             ----------------CCceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence                            112578899987654 67888899999999999999999998875321  12    23334455


Q ss_pred             chhhhhccCCccccCcEEEECC
Q 003460          205 FPLFRKHIEPDLHHAQIRINNR  226 (818)
Q Consensus       205 ~p~~~~~Iep~~~~ADiII~N~  226 (818)
                      .|.|.+++++.+..|+++|+++
T Consensus       140 ~~~y~~~~~~~~~~~~~vId~~  161 (182)
T PRK08233        140 RPLYLEALHTVKPNADIVLDGA  161 (182)
T ss_pred             HHHHHHHhhcCccCCeEEEcCC
Confidence            7888888877777899999876

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=99.48  E-value=6e-14  Score=139.15  Aligned_cols=166  Identities=20%  Similarity=0.296  Sum_probs=117.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh-CCeEEeccceecc----------cccCCCCCcccHHHHHHHHHhhhcCCccc-
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVG----------VDEGNDLDSIDFDALVQNLQDLTEGKDTL-  128 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L-g~~vI~~D~~~~~----------~~~~~~~~~~d~~~l~~~L~~l~~~~~i~-  128 (818)
                      +.++|||+|.++|||||||+.|+..+ |+.+||.||||+.          ..+++.++++|++++.+.+.....+.... 
T Consensus         3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~   82 (225)
T KOG3308|consen    3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP   82 (225)
T ss_pred             eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence            45899999999999999999999988 6899999999883          34566789999999999887665553321 


Q ss_pred             -c-------ccchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHH
Q 003460          129 -I-------PMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDS  199 (818)
Q Consensus       129 -~-------p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~  199 (818)
                       .       ..+.+.....    ........++|+||.+++. +.+...+|.+|++.++.+++.+||-.|......+--.
T Consensus        83 ~ar~~~v~~~~~~~~~~~~----q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~~Rt~y~p~~tgy  158 (225)
T KOG3308|consen   83 EAREHLVSYANFEHYAQQF----QIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRREARTYYPPDDTGY  158 (225)
T ss_pred             hHhhhhhhhhHHHHHhhhc----CcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhcccccCCCCCCcc
Confidence             0       0111111111    1122345689999999998 7888899999999999999999888776433222111


Q ss_pred             HHHhhchhhhhccCCccccC--cEEEECCCCCC
Q 003460          200 LIDSIFPLFRKHIEPDLHHA--QIRINNRFVSS  230 (818)
Q Consensus       200 ~~~~~~p~~~~~Iep~~~~A--DiII~N~~~~~  230 (818)
                      +...++|.|.++.+..+.++  |....|.-.+.
T Consensus       159 fd~~~~P~Y~~~~~~~~d~~~h~~~flngdvs~  191 (225)
T KOG3308|consen  159 FDPVVWPHYEKNFEEARDRSRHDSLFLNGDVSE  191 (225)
T ss_pred             ccCccchHHHHHHHHHHhhcccceeeecccchh
Confidence            22235788888886555554  77777764443

>TIGR00152 dephospho-CoA kinase

Probab=99.45  E-value=1.5e-13  Score=139.74  Aligned_cols=156  Identities=22%  Similarity=0.227  Sum_probs=107.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-----------------CCCcccHHHHHHHHHh----hh
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQD----LT  122 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~~~d~~~l~~~L~~----l~  122 (818)
                      +|||+|++||||||+++.|++..|+.++++|.+.+.+.+.+                 ..+..|...|.+.+..    +.
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~   80 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK   80 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence            48999999999999999999876699999999865432221                 1235666665554431    11


Q ss_pred             cCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHH
Q 003460          123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID  202 (818)
Q Consensus       123 ~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~  202 (818)
                      .-+.+.+|.+...........   .....+++++.+++++..+...||.+|+|+++.+.++.|.+.|+..........++
T Consensus        81 ~le~ilhP~i~~~i~~~i~~~---~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~~~s~~~~~~r~~  157 (188)
T TIGR00152        81 WLNNLLHPLIREWMKKLLAQF---QSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQLERLMQRDNLTEEEVQKRLA  157 (188)
T ss_pred             HHHHhhCHHHHHHHHHHHHHh---hcCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            123345565544443332211   11225899999999887888999999999999999999999998433334444445


Q ss_pred             hhchhhhhccCCccccCcEEEECCC
Q 003460          203 SIFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       203 ~~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      .+.+.+.+     +..||++|+|+.
T Consensus       158 ~q~~~~~~-----~~~ad~vI~N~~  177 (188)
T TIGR00152       158 SQMDIEER-----LARADDVIDNSA  177 (188)
T ss_pred             hcCCHHHH-----HHhCCEEEECCC
Confidence            55555444     688999999984

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=99.43  E-value=4e-13  Score=148.41  Aligned_cols=170  Identities=19%  Similarity=0.259  Sum_probs=118.8

Q ss_pred             hhhHHHHHH----HHHHHHhc-----CCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceecccc-------
Q 003460           43 HGYYLLVKS----IQELREKK-----GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVD-------  101 (818)
Q Consensus        43 ~~~~~l~~~----i~~~~~~~-----~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~-------  101 (818)
                      +.|.++...    |..+..+.     .+|++|||+|++|||||||++.|...+.     +.+|++|+||....       
T Consensus       184 ~~ylPl~~w~~~~i~~h~~~~~~~~~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~  263 (460)
T PLN03046        184 HYYIPVFIWCEDQIAEHRSKFKDGDDIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRE  263 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHh
Confidence            355566554    44444322     2689999999999999999999988772     67899999986321       


Q ss_pred             ---------cCCCCCcccHHHHHHHHHhh----hcCCccccccchhhhhc----ccccc--ccccCCccEEEEEecccch
Q 003460          102 ---------EGNDLDSIDFDALVQNLQDL----TEGKDTLIPMFDYQQKN----RIGSK--VIKGASSGVVIVDGTYALD  162 (818)
Q Consensus       102 ---------~~~~~~~~d~~~l~~~L~~l----~~~~~i~~p~~d~~~~~----~~~~~--~~~~~~~~vVIvEG~~l~~  162 (818)
                               .++.|.++|.....+.|..+    +.|+.+.+|.||+..+.    |....  .....+.+|||+||++++.
T Consensus       264 ~nP~n~LL~~RG~PGTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~  343 (460)
T PLN03046        264 RNPGNALLELRGNAGSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGF  343 (460)
T ss_pred             hCccchhhcccCCCccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCC
Confidence                     12346789988877777776    56888999999999854    44321  1234567899999998765


Q ss_pred             h--------------------------hhhcCCCEEEEEEcC-HHHHHHHHHHhccCC------Cc---CHHHHHHhhch
Q 003460          163 A--------------------------RLRSLLDIRVAVVGG-VHFSLISKVQYDIGD------SC---SLDSLIDSIFP  206 (818)
Q Consensus       163 ~--------------------------~l~~~~D~~I~Vda~-~e~~l~Rri~Rd~~~------~~---s~e~~~~~~~p  206 (818)
                      .                          .+...+|.-|.+.++ .+...+||.+++...      ..   .+.++++.++|
T Consensus       344 ~P~~~~~l~~~D~~l~~VN~~L~~Y~~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV~~FV~~YmP  423 (460)
T PLN03046        344 KPLPNEVVKAVDPQLEVVNKNLEAYYDAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEVMDFVSRYLP  423 (460)
T ss_pred             CCCChHHhhccChhHHHHHHHHHHHHHHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhhh
Confidence            1                          111246676777776 477778887666422      12   35566778899


Q ss_pred             hhhhcc
Q 003460          207 LFRKHI  212 (818)
Q Consensus       207 ~~~~~I  212 (818)
                      .|+.|.
T Consensus       424 aY~~y~  429 (460)
T PLN03046        424 AYKAYL  429 (460)
T ss_pred             HHHHHH
Confidence            998877

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=99.41  E-value=2.8e-13  Score=136.74  Aligned_cols=158  Identities=18%  Similarity=0.218  Sum_probs=110.5

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhh---------h-ccc---CCCcccccHHHHHHHHHH----Hh
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV---------K-DFK---YDDFSSLDLSLLSKNISD----IR  581 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~---------~-~~~---~d~p~t~D~~ll~~~L~~----L~  581 (818)
                      +|||+|++||||||+++.|++ +|+.++++|++.+..-.         . .+.   +...+.+|...|.+.+..    ++
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~   79 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK   79 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence            589999999999999999999 89999999999876210         1 111   123467888888776543    34


Q ss_pred             cCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch-
Q 003460          582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-  660 (818)
Q Consensus       582 ~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~-  660 (818)
                      .-+.+.+|.+.........     ......++|+|+.+++...+...+|..|+|++|.+.++.|.+.||.    .+.+. 
T Consensus        80 ~l~~i~hp~i~~~~~~~~~-----~~~~~~~vive~plL~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd~----~s~~~~  150 (179)
T cd02022          80 KLEAITHPLIRKEIEEQLA-----EARKEKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERLMKRDG----LSEEEA  150 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----HccCCCEEEEEehHhhcCCcHHhCCeEEEEECCHHHHHHHHHHcCC----CCHHHH
Confidence            4456777776655433221     0111369999999999888889999999999999999999999983    23222 


Q ss_pred             hhHHHhhcchhhhhccccCCcccEEEeCCCC
Q 003460          661 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD  691 (818)
Q Consensus       661 ~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~  691 (818)
                      .+.+....+.     ++.+..||++|.|+.+
T Consensus       151 ~~r~~~Q~~~-----~~~~~~aD~vI~N~~~  176 (179)
T cd02022         151 EARIASQMPL-----EEKRARADFVIDNSGS  176 (179)
T ss_pred             HHHHHhcCCH-----HHHHHhCCEEEECcCC
Confidence            1222222222     2345789999998743

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=99.40  E-value=1.9e-13  Score=137.76  Aligned_cols=158  Identities=18%  Similarity=0.223  Sum_probs=104.9

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch----hh-----h----hcccCCCcccccHHHHHHHHH----HH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS----EQ-----V----KDFKYDDFSSLDLSLLSKNIS----DI  580 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~----~~-----~----~~~~~d~p~t~D~~ll~~~L~----~L  580 (818)
                      ++|||+|+.||||||+++.|++ +|+.++++|...+.    ..     .    +..-++.-+++|...|.+.+.    .+
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~   79 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL   79 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence            5899999999999999999999 99999999988664    11     0    111123447788888887652    23


Q ss_pred             hcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch
Q 003460          581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ  660 (818)
Q Consensus       581 ~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~  660 (818)
                      +.-+.+.+|........+..     .....+++++|..+++...+...+|..|+|.+|.++++.|.+.||    |.+.+.
T Consensus        80 ~~L~~iihP~I~~~~~~~~~-----~~~~~~~~v~e~pLL~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~----~~~~~~  150 (180)
T PF01121_consen   80 KKLENIIHPLIREEIEKFIK-----RNKSEKVVVVEIPLLFESGLEKLCDEVIVVYAPEEIRIKRLMERD----GLSEEE  150 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-----HCHSTSEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHHH----TSTHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHH-----hccCCCEEEEEcchhhhhhHhhhhceEEEEECCHHHHHHHHHhhC----CCcHHH
Confidence            33345666765444332221     111127999999999998999999999999999999999999997    444433


Q ss_pred             -hhHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460          661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF  690 (818)
Q Consensus       661 -~~~~~~v~p~~~~~I~p~~~~ADivI~n~~  690 (818)
                       .+......|..++     ++.||+||+|+-
T Consensus       151 ~~~ri~~Q~~~~~k-----~~~ad~vI~N~g  176 (180)
T PF01121_consen  151 AEARIASQMPDEEK-----RKRADFVIDNNG  176 (180)
T ss_dssp             HHHHHHTS--HHHH-----HHH-SEEEE-SS
T ss_pred             HHHHHHhCCCHHHH-----HHhCCEEEECCC
Confidence             3444445555444     368999999973

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PLN02796 D-glycerate 3-kinase

Probab=99.37  E-value=4e-12  Score=138.76  Aligned_cols=153  Identities=18%  Similarity=0.280  Sum_probs=111.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceecccc----------------cCCCCCcccHHHHHHHH
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVD----------------EGNDLDSIDFDALVQNL  118 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~----------------~~~~~~~~d~~~l~~~L  118 (818)
                      .++++|||+|++||||||+++.|+..+.     +..|++|+||....                -++.|.++|...+.+.|
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e~L  177 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNALLELRGNAGSHDLALGVETL  177 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhhhhcCCCCchhHHHHHHHHH
Confidence            4689999999999999999999999884     56799999986321                12446789999999998


Q ss_pred             Hhhh----cCCccccccchhhhhc----ccccc--ccccCCccEEEEEecccchh-------------------------
Q 003460          119 QDLT----EGKDTLIPMFDYQQKN----RIGSK--VIKGASSGVVIVDGTYALDA-------------------------  163 (818)
Q Consensus       119 ~~l~----~~~~i~~p~~d~~~~~----~~~~~--~~~~~~~~vVIvEG~~l~~~-------------------------  163 (818)
                      ..++    .+..+.+|.||+..+.    |....  .....+.+|||+||+++...                         
T Consensus       178 ~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l~~~~~~l~~vN~~L~~y~  257 (347)
T PLN02796        178 EALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAVKAVDPQLEVVNKNLEAYY  257 (347)
T ss_pred             HHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHhhccChhHHHHHHHHHHHH
Confidence            8887    5778999999999865    43221  12335678999999988651                         


Q ss_pred             -hhhcCCCEEEEEEcC-HHHHHHHHHHhcc------CCCc---CHHHHHHhhchhhhhcc
Q 003460          164 -RLRSLLDIRVAVVGG-VHFSLISKVQYDI------GDSC---SLDSLIDSIFPLFRKHI  212 (818)
Q Consensus       164 -~l~~~~D~~I~Vda~-~e~~l~Rri~Rd~------~~~~---s~e~~~~~~~p~~~~~I  212 (818)
                       .+...+|.-|.+.++ .+.-.+||.+.+.      ....   .+.+++++++|.|+.|.
T Consensus       258 ~~w~~~~d~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gMsde~v~~FV~~~mP~y~~y~  317 (347)
T PLN02796        258 DAWDKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGMSDEEVADFVSRYMPAYKAYL  317 (347)
T ss_pred             HHHHHhhceEEEEeCCCchHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence             222356788888876 5555666644432      1123   45566678899888875

>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]

Probab=99.36  E-value=2.4e-12  Score=129.73  Aligned_cols=139  Identities=19%  Similarity=0.224  Sum_probs=113.3

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhC-------------Ccccccccccchhhh---------hcccCCCcccccHH
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-------------CEVVSLESYFKSEQV---------KDFKYDDFSSLDLS  571 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg-------------~~vis~Ddfy~~~~~---------~~~~~d~p~t~D~~  571 (818)
                      .+....+|++|++|+||||++..+.++..             +.++.||.|+...+.         +....+.|-|||-+
T Consensus       116 ~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~~  195 (323)
T KOG2702|consen  116 SNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDSN  195 (323)
T ss_pred             ccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCHH
Confidence            44567899999999999999999987432             346899999876321         12235678999999


Q ss_pred             HHHHHHHHHh--cCCceecccccccccccCCCcceeeecCCcEEEEEecccch-----HhhhhcCCEEEEEEcChhHHHH
Q 003460          572 LLSKNISDIR--NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-----PEIRKSLDLWIAVVGGVHSHLI  644 (818)
Q Consensus       572 ll~~~L~~L~--~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-----~~l~~~~D~~I~v~~~~d~rl~  644 (818)
                      ++.+.+..|+  .-..+.+|.||+..+|.++. .+-+.....|||+||.|++.     ..+.+.+|.+.|++.+.+...+
T Consensus       196 lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~D-dicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~  274 (323)
T KOG2702|consen  196 LFLQLCKILKKTTIPDIYVPSFDHALGDPVPD-DICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAEE  274 (323)
T ss_pred             HHHHHHHHHhhcCCCceeccccccccCCCCcc-ceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHHH
Confidence            9999999988  45679999999999998874 45555668999999999974     4577889999999999999999


Q ss_pred             HHHhcCccc
Q 003460          645 SRVQRDKSR  653 (818)
Q Consensus       645 Rri~Rd~~~  653 (818)
                      |...|.+..
T Consensus       275 RVa~RHl~s  283 (323)
T KOG2702|consen  275 RVAKRHLQS  283 (323)
T ss_pred             HHHHHhhcc
Confidence            999998765

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.36  E-value=1.7e-12  Score=133.21  Aligned_cols=161  Identities=14%  Similarity=0.089  Sum_probs=111.8

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhh---------hccc---CCCcccccHHHHHHHHHH--
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV---------KDFK---YDDFSSLDLSLLSKNISD--  579 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~---------~~~~---~d~p~t~D~~ll~~~L~~--  579 (818)
                      ...|++|||+|++||||||+++.|++.+|+.+++.|...+.--.         ..++   ++ .+.+|...|.+.+..  
T Consensus         3 ~~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~-~g~idR~~L~~~vF~d~   81 (204)
T PRK14733          3 FINTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVM-NKQINRAMLRAIITESK   81 (204)
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhcc-CCCcCHHHHHHHHhCCH
Confidence            34689999999999999999999999899999999988665210         1111   12 367888888876532  


Q ss_pred             --HhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhh--hhcCCEEEEEEcChhHHHHHHHhcCccccC
Q 003460          580 --IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEI--RKSLDLWIAVVGGVHSHLISRVQRDKSRMG  655 (818)
Q Consensus       580 --L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l--~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg  655 (818)
                        ++.-+.+.+|........+..      ..+..++++|..+++...+  ...+|..|+|++|.+.++.|.+.||..   
T Consensus        82 ~~~~~Le~i~HP~V~~~~~~~~~------~~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~---  152 (204)
T PRK14733         82 EAKKWLEDYLHPVINKEIKKQVK------ESDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDGK---  152 (204)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHH------hcCCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCCC---
Confidence              333345667765554432221      1123689999999987543  568999999999999999999999843   


Q ss_pred             cccch-hhHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460          656 CFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF  690 (818)
Q Consensus       656 ~~~~~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~~  690 (818)
                       +.+. .+......|..++     ++.||+||+|+-
T Consensus       153 -s~~~a~~ri~~Q~~~eek-----~~~aD~VI~N~g  182 (204)
T PRK14733        153 -NRQQAVAFINLQISDKER-----EKIADFVIDNTE  182 (204)
T ss_pred             -CHHHHHHHHHhCCCHHHH-----HHhCCEEEECcC
Confidence             2222 2334444444333     478999999975

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.35  E-value=1.5e-12  Score=133.34  Aligned_cols=160  Identities=15%  Similarity=0.176  Sum_probs=107.2

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------h-hcc---cCCCcc-cccHHHHHHHHHH----
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V-KDF---KYDDFS-SLDLSLLSKNISD----  579 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~---------~-~~~---~~d~p~-t~D~~ll~~~L~~----  579 (818)
                      .+|||+|++||||||+++.|++.+|+.++++|++.+.--         . ..+   -....+ ++|...|.+.+..    
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~   81 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE   81 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence            379999999999999999999988999999999976511         0 011   122346 6888777775421    


Q ss_pred             HhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccc
Q 003460          580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS  659 (818)
Q Consensus       580 L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~  659 (818)
                      ++.-+.+.+|..-.....+.     .......++++|-.+++...+...+|..|+|++|.++++.|.+.|+    |.+.+
T Consensus        82 ~~~l~~i~hP~i~~~~~~~~-----~~~~~~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~----g~s~e  152 (195)
T PRK14730         82 RRWLENLIHPYVRERFEEEL-----AQLKSNPIVVLVIPLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRD----GLTEE  152 (195)
T ss_pred             HHHHHHHHhHHHHHHHHHHH-----HhcCCCCEEEEEeHHhcCcchHhCCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence            22222345554332222111     0111236899999999998899999999999999999999999997    33322


Q ss_pred             h-hhHHHhhcchhhhhccccCCcccEEEeCCCC
Q 003460          660 Q-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD  691 (818)
Q Consensus       660 ~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~  691 (818)
                      . .+......|     ++..+..||++|+|+.+
T Consensus       153 ~~~~ri~~Q~~-----~~~k~~~aD~vI~N~g~  180 (195)
T PRK14730        153 EAEARINAQWP-----LEEKVKLADVVLDNSGD  180 (195)
T ss_pred             HHHHHHHhCCC-----HHHHHhhCCEEEECCCC
Confidence            2 222222222     23446789999998743

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.33  E-value=2.6e-12  Score=131.47  Aligned_cols=159  Identities=19%  Similarity=0.236  Sum_probs=107.0

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------h-hcc---cCCCcccccHHHHHHHHH----H
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V-KDF---KYDDFSSLDLSLLSKNIS----D  579 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~---------~-~~~---~~d~p~t~D~~ll~~~L~----~  579 (818)
                      +.+|||+|++||||||+++.|++ +|+.++++|.+.+..-         . ..+   .+...+.+|...|.+.+.    .
T Consensus         2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~   80 (194)
T PRK00081          2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA   80 (194)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence            46899999999999999999999 9999999999977521         0 011   122346788887777553    2


Q ss_pred             HhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccc
Q 003460          580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS  659 (818)
Q Consensus       580 L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~  659 (818)
                      +..-..+.+|..-.......     .......++++|+.+++...+...+|..|+|++|.+.++.|.+.|+.    .+.+
T Consensus        81 ~~~L~~i~hP~v~~~~~~~~-----~~~~~~~~vv~e~pll~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~~----~s~e  151 (194)
T PRK00081         81 RKKLEAILHPLIREEILEQL-----QEAESSPYVVLDIPLLFENGLEKLVDRVLVVDAPPETQLERLMARDG----LSEE  151 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----HHcccCCEEEEEehHhhcCCchhhCCeEEEEECCHHHHHHHHHHcCC----CCHH
Confidence            22233455555433322211     01112269999999999988889999999999999999999998863    2322


Q ss_pred             h-hhHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460          660 Q-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF  690 (818)
Q Consensus       660 ~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~~  690 (818)
                      . .+......+..     .....||++|+|+-
T Consensus       152 ~~~~ri~~Q~~~~-----~~~~~ad~vI~N~g  178 (194)
T PRK00081        152 EAEAIIASQMPRE-----EKLARADDVIDNNG  178 (194)
T ss_pred             HHHHHHHHhCCHH-----HHHHhCCEEEECCC
Confidence            2 22233233322     23467999999864

>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]

Probab=99.30  E-value=2.5e-12  Score=146.99  Aligned_cols=167  Identities=26%  Similarity=0.444  Sum_probs=143.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhC----------CeEEeccceeccc------------ccCCCCCcccHHHHHHH
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIG----------CTLISMENYRVGV------------DEGNDLDSIDFDALVQN  117 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg----------~~vI~~D~~~~~~------------~~~~~~~~~d~~~l~~~  117 (818)
                      ..+++||+.|+++|||||++..+.+.++          +..++.|.||+.+            ...+.|++++.+.+...
T Consensus        42 ~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~~~~  121 (473)
T KOG4203|consen   42 KEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELLYLT  121 (473)
T ss_pred             cceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccCCCCcchhhHHHH
Confidence            4689999999999999999999888777          3457778788732            23457899999999999


Q ss_pred             HHhhhcCCccccccchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC-c
Q 003460          118 LQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-C  195 (818)
Q Consensus       118 L~~l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~  195 (818)
                      +.++..+..+..|.|++..+.+.+.......+..++++||++.++ ...+++.+.++|++.+.+.++.|++.|+...+ .
T Consensus       122 ~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~~g~  201 (473)
T KOG4203|consen  122 LKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVERGR  201 (473)
T ss_pred             HhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhhhcc
Confidence            999999999999999999999977766666777789999999988 78889999999999999999999999998876 4


Q ss_pred             CHHHHHH----hhchhhhhccCCccccCcEEEECC
Q 003460          196 SLDSLID----SIFPLFRKHIEPDLHHAQIRINNR  226 (818)
Q Consensus       196 s~e~~~~----~~~p~~~~~Iep~~~~ADiII~N~  226 (818)
                      +++.+..    +..|.+..||+|+++.||++|+..
T Consensus       202 ~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~  236 (473)
T KOG4203|consen  202 DLESILTQYSTFVKPAFEEFILPTKKYADVIIPRG  236 (473)
T ss_pred             cHHHHHHHHHhhcCchHHHHhhHHHHhhhheeecc
Confidence            6555554    468999999999999999999765

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.29  E-value=7.6e-12  Score=120.60  Aligned_cols=146  Identities=20%  Similarity=0.239  Sum_probs=100.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccc
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS  142 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~  142 (818)
                      ++|.|+|++||||||+|+.||+.+|.+++++..+|+.+...-..+-.+|..+.+           ..|.+|.....+...
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE-----------~~p~iD~~iD~rq~e   69 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAE-----------EDPEIDKEIDRRQKE   69 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHh-----------cCchhhHHHHHHHHH
Confidence            379999999999999999999999999999999999776544443333333221           136667666665432


Q ss_pred             cccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHh-------hchhhhhcc--C
Q 003460          143 KVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDS-------IFPLFRKHI--E  213 (818)
Q Consensus       143 ~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~-------~~p~~~~~I--e  213 (818)
                      ..    ...-+|+||-++.+-. +...|++||+.||.++|..|...|+..   +.+++.+.       -..-|.++.  .
T Consensus        70 ~a----~~~nvVlegrLA~Wi~-k~~adlkI~L~Apl~vRa~Ria~REgi---~~~~a~~~~~~RE~se~kRY~~~YgID  141 (179)
T COG1102          70 LA----KEGNVVLEGRLAGWIV-REYADLKIWLKAPLEVRAERIAKREGI---DVDEALAETVEREESEKKRYKKIYGID  141 (179)
T ss_pred             HH----HcCCeEEhhhhHHHHh-ccccceEEEEeCcHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            11    1345899999987732 268999999999999999999999843   33333221       122333332  1


Q ss_pred             -CccccCcEEEECCC
Q 003460          214 -PDLHHAQIRINNRF  227 (818)
Q Consensus       214 -p~~~~ADiII~N~~  227 (818)
                       .+..-.|+||+.+.
T Consensus       142 idDlSiyDLVinTs~  156 (179)
T COG1102         142 IDDLSIYDLVINTSK  156 (179)
T ss_pred             CccceeeEEEEeccc
Confidence             33566789987663

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.28  E-value=7.3e-12  Score=128.70  Aligned_cols=161  Identities=19%  Similarity=0.209  Sum_probs=108.1

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh----h-----h----hcccCCCcccccHHHHHHHHH----HH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE----Q-----V----KDFKYDDFSSLDLSLLSKNIS----DI  580 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~----~-----~----~~~~~d~p~t~D~~ll~~~L~----~L  580 (818)
                      .+|||+|++||||||+++.|+. +|+.+++.|+..+..    .     .    +..-.+..+++|...|.+.+.    .+
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~   80 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT   80 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence            5799999999999999999998 899999999865541    1     0    111123457888888877653    22


Q ss_pred             hcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch
Q 003460          581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ  660 (818)
Q Consensus       581 ~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~  660 (818)
                      +.-+.+.+|..-.....+..  . ....+..++++|..+++...+.+.+|.+|||++|.++++.|.+.|+    |.+.+.
T Consensus        81 ~~le~i~hP~v~~~~~~~~~--~-~~~~~~~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~----g~s~e~  153 (200)
T PRK14734         81 ALLNAITHPRIAEETARRFN--E-ARAQGAKVAVYDMPLLVEKGLDRKMDLVVVVDVDVEERVRRLVEKR----GLDEDD  153 (200)
T ss_pred             HHHHHhhCHHHHHHHHHHHH--H-HHhcCCCEEEEEeeceeEcCccccCCeEEEEECCHHHHHHHHHHcC----CCCHHH
Confidence            22334556654332221110  0 0012346899999999888888899999999999999999999885    443332


Q ss_pred             -hhHHHhhcchhhhhccccCCcccEEEeCCCC
Q 003460          661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD  691 (818)
Q Consensus       661 -~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~  691 (818)
                       ........+.+..     ...||++|+|+.+
T Consensus       154 ~~~ri~~Q~~~~~k-----~~~ad~vI~N~g~  180 (200)
T PRK14734        154 ARRRIAAQIPDDVR-----LKAADIVVDNNGT  180 (200)
T ss_pred             HHHHHHhcCCHHHH-----HHhCCEEEECcCC
Confidence             2334434444332     3689999998754

>PLN02422 dephospho-CoA kinase

Probab=99.24  E-value=1.4e-11  Score=128.62  Aligned_cols=161  Identities=19%  Similarity=0.161  Sum_probs=110.3

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------h-hcc---cCCCcccccHHHHHHHHH----HH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V-KDF---KYDDFSSLDLSLLSKNIS----DI  580 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~---------~-~~~---~~d~p~t~D~~ll~~~L~----~L  580 (818)
                      .+|||+|++||||||+++.|++ +|+.++++|+..+.--         . ..+   -++..+++|...|.+.+.    .+
T Consensus         2 ~~igltG~igsGKstv~~~l~~-~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~   80 (232)
T PLN02422          2 RVVGLTGGIASGKSTVSNLFKS-SGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR   80 (232)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            3799999999999999999994 8999999999877511         0 111   123457889888887663    23


Q ss_pred             hcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch
Q 003460          581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ  660 (818)
Q Consensus       581 ~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~  660 (818)
                      +.-+.+.+|..-.....+..  ... ..+.+++++|..+++...+.+.+|..|+|++|.+.+++|.+.|+    |.+.+.
T Consensus        81 ~~Le~IlHP~V~~~~~~~~~--~~~-~~~~~~vv~eipLL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~----g~s~ee  153 (232)
T PLN02422         81 QLLNRLLAPYISSGIFWEIL--KLW-LKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQLERLMARD----GLSEEQ  153 (232)
T ss_pred             HHHHHHhhHHHHHHHHHHHH--HHH-hcCCCEEEEEehhhhhcchhhhCCEEEEEECCHHHHHHHHHHcC----CCCHHH
Confidence            33345666765333221110  000 11236999999999988888899999999999999999999997    333332


Q ss_pred             -hhHHHhhcchhhhhccccCCcccEEEeCCCC
Q 003460          661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD  691 (818)
Q Consensus       661 -~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~  691 (818)
                       ........|...     ....||++|.|+.+
T Consensus       154 a~~Ri~~Q~~~ee-----k~~~AD~VI~N~gs  180 (232)
T PLN02422        154 ARNRINAQMPLDW-----KRSKADIVIDNSGS  180 (232)
T ss_pred             HHHHHHHcCChhH-----HHhhCCEEEECCCC
Confidence             233333334332     25679999999854

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=99.22  E-value=1.4e-11  Score=126.02  Aligned_cols=158  Identities=16%  Similarity=0.221  Sum_probs=107.1

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------h-hcc---cCCCcccccHHHHHHHHH----HHh
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V-KDF---KYDDFSSLDLSLLSKNIS----DIR  581 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~---------~-~~~---~~d~p~t~D~~ll~~~L~----~L~  581 (818)
                      +|||+|++||||||+++.|+. +|+.+++.|...+..-         . ..+   -++..+.+|...|.+.+.    .++
T Consensus         1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~   79 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK   79 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence            489999999999999999976 7999999998866411         0 111   123347788888887653    233


Q ss_pred             cCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch-
Q 003460          582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-  660 (818)
Q Consensus       582 ~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~-  660 (818)
                      .-+.+.+|..-........  .   .....++|+|..+++...+...+|..|||++|.++++.|.+.|+    |.+.++ 
T Consensus        80 ~L~~i~hP~v~~~~~~~~~--~---~~~~~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~----g~s~e~a  150 (196)
T PRK14732         80 ALNELIHPLVRKDFQKILQ--T---TAEGKLVIWEVPLLFETDAYTLCDATVTVDSDPEESILRTISRD----GMKKEDV  150 (196)
T ss_pred             HHHHHhhHHHHHHHHHHHH--H---HhcCCcEEEEeeeeeEcCchhhCCEEEEEECCHHHHHHHHHHcC----CCCHHHH
Confidence            3344666665443322110  1   11236899999999988888899999999999999999999996    333332 


Q ss_pred             hhHHHhhcchhhhhccccCCcccEEEeCCCC
Q 003460          661 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD  691 (818)
Q Consensus       661 ~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~  691 (818)
                      ........|     +.+....||++|.|+.+
T Consensus       151 ~~ri~~Q~~-----~~~k~~~aD~vI~N~~~  176 (196)
T PRK14732        151 LARIASQLP-----ITEKLKRADYIVRNDGN  176 (196)
T ss_pred             HHHHHHcCC-----HHHHHHhCCEEEECCCC
Confidence            222222222     34456789999998753

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=99.22  E-value=2.3e-11  Score=128.17  Aligned_cols=163  Identities=15%  Similarity=0.140  Sum_probs=106.3

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------h-hcc---cCCCcccccHHHHHHHHH----HH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V-KDF---KYDDFSSLDLSLLSKNIS----DI  580 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~---------~-~~~---~~d~p~t~D~~ll~~~L~----~L  580 (818)
                      ++|||+|+.||||||+++.|.+.+|+.++++|...+.--         . ..+   -.+..+.+|...|.+.+.    .+
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~   81 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR   81 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            689999999999999999999988999999998876511         1 011   122247899988888652    22


Q ss_pred             hcCCceecccccccccccCCC------cceeeecCCcEEEEEecccchHhh-hhcCCEEEEEEcChhHHHHHHHhcCccc
Q 003460          581 RNGRRTKVPIFDLETGARSGF------KELEVSEDCGVIIFEGVYALHPEI-RKSLDLWIAVVGGVHSHLISRVQRDKSR  653 (818)
Q Consensus       581 ~~g~~v~~P~yD~~~~~r~~~------~~~~~~~~~~vvIvEG~~~~~~~l-~~~~D~~I~v~~~~d~rl~Rri~Rd~~~  653 (818)
                      +.-+.+.+|..-.....+...      ..........++++|..++++..+ ...+|..|+|+++.+.++.|.+.|+   
T Consensus        82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~---  158 (244)
T PTZ00451         82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRKRN---  158 (244)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcCCeEEEEECCHHHHHHHHHHcC---
Confidence            333445666543322111100      000001123599999999998764 4578999999999999999999885   


Q ss_pred             cCcccch-hhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460          654 MGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRND  689 (818)
Q Consensus       654 rg~~~~~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~  689 (818)
                       |.+.++ .+......+.     ...+..||+||.|+
T Consensus       159 -g~s~eea~~Ri~~Q~~~-----~ek~~~aD~VI~N~  189 (244)
T PTZ00451        159 -GFSKEEALQRIGSQMPL-----EEKRRLADYIIEND  189 (244)
T ss_pred             -CCCHHHHHHHHHhCCCH-----HHHHHhCCEEEECC
Confidence             333332 2233333332     22357899999997

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.17  E-value=1.9e-10  Score=116.59  Aligned_cols=173  Identities=16%  Similarity=0.155  Sum_probs=108.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc---cCCCCCcccHHHHHHHHHhhh-----------cCCcc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD---EGNDLDSIDFDALVQNLQDLT-----------EGKDT  127 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~---~~~~~~~~d~~~l~~~L~~l~-----------~~~~i  127 (818)
                      .++|+|+||+||||||+|+.||+.||..++++..+|+.+.   -....+.-|.+.+.+.+..+.           .|+++
T Consensus         4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedv   83 (222)
T COG0283           4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDV   83 (222)
T ss_pred             ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchh
Confidence            3899999999999999999999999999999999999432   112233334444444443221           11122


Q ss_pred             ccccchhhhhccc--------------cccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCC
Q 003460          128 LIPMFDYQQKNRI--------------GSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGD  193 (818)
Q Consensus       128 ~~p~~d~~~~~~~--------------~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~  193 (818)
                      ....-.......+              ..+........-+|+||-=+.. .+.+.++++||+++++++|.+||.+-....
T Consensus        84 s~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGT-vV~PdA~lKiFLtAS~e~RA~RR~~q~~~~  162 (222)
T COG0283          84 SEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGT-VVFPDAELKIFLTASPEERAERRYKQLQAK  162 (222)
T ss_pred             hhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcc-eECCCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence            1111111111110              0000001122448899875543 445778999999999999999998876555


Q ss_pred             Cc--CHHHHHH----hhchhhhhccCCccccCcEEEECCCCCChhhhh
Q 003460          194 SC--SLDSLID----SIFPLFRKHIEPDLHHAQIRINNRFVSSFREAI  235 (818)
Q Consensus       194 ~~--s~e~~~~----~~~p~~~~~Iep~~~~ADiII~N~~~~~~~~~~  235 (818)
                      ..  ..+++.+    +-.....+-+.|.++..|.++..+..++++|-.
T Consensus       163 g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv  210 (222)
T COG0283         163 GFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVV  210 (222)
T ss_pred             cCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHHH
Confidence            42  2455554    335566666789999999877666567766544

>PRK01184 hypothetical protein; Provisional

Probab=99.15  E-value=1.6e-10  Score=116.99  Aligned_cols=154  Identities=18%  Similarity=0.176  Sum_probs=88.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc-cCCCCCcccHHHHHHHHHhhhc--CCccccccchhhhhc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-EGNDLDSIDFDALVQNLQDLTE--GKDTLIPMFDYQQKN  138 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~-~~~~~~~~d~~~l~~~L~~l~~--~~~i~~p~~d~~~~~  138 (818)
                      |++|+|+|++||||||+|+ +++.+|+.++++|+..+... ..+.+...  +.+.+....+..  +..+    +....+.
T Consensus         1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~----~~~~~~~   73 (184)
T PRK01184          1 MKIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTD--ENIGKVAIDLRKELGMDA----VAKRTVP   73 (184)
T ss_pred             CcEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCc--HHHHHHHHHHHHHHChHH----HHHHHHH
Confidence            5689999999999999998 56778999999988654322 22211111  111221111111  0000    0011111


Q ss_pred             cccccccccCCccEEEEEecccch--hhhhcCCC---EEEEEEcCHHHHHHHHHHhccCCC-cCHHHHHHhhchhhhhcc
Q 003460          139 RIGSKVIKGASSGVVIVDGTYALD--ARLRSLLD---IRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHI  212 (818)
Q Consensus       139 ~~~~~~~~~~~~~vVIvEG~~l~~--~~l~~~~D---~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~~~~~p~~~~~I  212 (818)
                      .+     ......++|++|+....  ..+++.++   ..|+|+++.+.+..|...|+.... .+.+.+.++...+...-+
T Consensus        74 ~i-----~~~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~  148 (184)
T PRK01184         74 KI-----REKGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGI  148 (184)
T ss_pred             HH-----HhcCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCH
Confidence            11     11234689999984332  34444555   899999999999999998874322 244555544333211112


Q ss_pred             CCccccCcEEEECCC
Q 003460          213 EPDLHHAQIRINNRF  227 (818)
Q Consensus       213 ep~~~~ADiII~N~~  227 (818)
                      +...+.||++|+|+.
T Consensus       149 ~~~~~~ad~vI~N~~  163 (184)
T PRK01184        149 GEVIALADYMIVNDS  163 (184)
T ss_pred             HHHHHhcCEEEeCCC
Confidence            334578999999874

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=99.15  E-value=9.6e-11  Score=121.21  Aligned_cols=163  Identities=21%  Similarity=0.261  Sum_probs=100.6

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------h-hcc-----cCCCccc--ccHHHHHHHH
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V-KDF-----KYDDFSS--LDLSLLSKNI  577 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~---------~-~~~-----~~d~p~t--~D~~ll~~~L  577 (818)
                      ..+++|||+|++||||||+++.|.. +|+.+++.|...+.-.         . ..+     ..+..+.  +|...|.+.+
T Consensus         3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~v   81 (208)
T PRK14731          3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVV   81 (208)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHH
Confidence            4578999999999999999999997 8999999997755310         0 001     0111222  6666655433


Q ss_pred             H----HHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccc
Q 003460          578 S----DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSR  653 (818)
Q Consensus       578 ~----~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~  653 (818)
                      .    .++.-+.+.+|..-........  .. ...+..++++|+.+++...+...+|..|+|++|.+++..|.+.|+.. 
T Consensus        82 f~~~~~~~~l~~i~hp~i~~~~~~~i~--~~-~~~~~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R~~~-  157 (208)
T PRK14731         82 FSDPEKLGALNRLIHPKVFAAFQRAVD--RA-ARRGKRILVKEAAILFESGGDAGLDFIVVVAADTELRLERAVQRGMG-  157 (208)
T ss_pred             hCCHHHHHHHHHHHCHHHHHHHHHHHH--HH-HhcCCCEEEEEeeeeeecCchhcCCeEEEEECCHHHHHHHHHHcCCC-
Confidence            1    1222223444543222111110  00 01234689999998888777788999999999999999999999632 


Q ss_pred             cCcccch-hhHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460          654 MGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF  690 (818)
Q Consensus       654 rg~~~~~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~~  690 (818)
                         +.+. .+......+... .    ...||++|.|+-
T Consensus       158 ---s~e~~~~Ri~~q~~~~~-~----~~~ad~vI~N~g  187 (208)
T PRK14731        158 ---SREEIRRRIAAQWPQEK-L----IERADYVIYNNG  187 (208)
T ss_pred             ---CHHHHHHHHHHcCChHH-H----HHhCCEEEECCC
Confidence               2221 223333333222 2    246999999864

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=99.14  E-value=5e-11  Score=122.00  Aligned_cols=160  Identities=18%  Similarity=0.216  Sum_probs=102.1

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh---------hhhcccCC-----CcccccHHHHHHHHH----
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE---------QVKDFKYD-----DFSSLDLSLLSKNIS----  578 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~---------~~~~~~~d-----~p~t~D~~ll~~~L~----  578 (818)
                      +.+|||+|++||||||+|+.+++ +|++++++|++.+.-         ...+ .|+     .-+.+|...|.+.+.    
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~-~fG~~i~~~dg~~~r~~L~~~vf~~~~   79 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAE-RFGLEILDEDGGLDRRKLREKVFNDPE   79 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHH-HcCCcccCCCchhHHHHHHHHHcCCHH
Confidence            57999999999999999999999 999999999998841         1111 122     234556665555431    


Q ss_pred             HHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCccc
Q 003460          579 DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM  658 (818)
Q Consensus       579 ~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~  658 (818)
                      .+..-+.+.+|....... ..    ... ....++++|-.+++.......+|..|.|++|.+++++|.+.|+...++.  
T Consensus        80 ~~~~Le~i~hPli~~~~~-~~----~~~-~~~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~--  151 (201)
T COG0237          80 ARLKLEKILHPLIRAEIK-VV----IDG-ARSPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEED--  151 (201)
T ss_pred             HHHHHHHhhhHHHHHHHH-HH----HHH-hhCCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHH--
Confidence            122223344554222211 00    000 1112788888887776566669999999999999999999998222111  


Q ss_pred             chhhHHHhhcchhhhhccccCCcccEEEeCCCCC
Q 003460          659 SQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDP  692 (818)
Q Consensus       659 ~~~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~  692 (818)
                       .........+..++     ...||+|++|++..
T Consensus       152 -~~~~~~~Q~~~~ek-----~~~ad~vi~n~~~i  179 (201)
T COG0237         152 -AEARLASQRDLEEK-----LALADVVIDNDGSI  179 (201)
T ss_pred             -HHHHHHhcCCHHHH-----HhhcCChhhcCCCH
Confidence             12233334455554     37899999998754

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.14  E-value=1.5e-10  Score=111.98  Aligned_cols=139  Identities=17%  Similarity=0.227  Sum_probs=86.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK  143 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~  143 (818)
                      +|.|+|++||||||+|+.|++.+|+++++.|.+.....             ........     ..+.++........ .
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~-------------~~~~~~~~-----~~~~i~~~l~~~~~-~   61 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV-------------GKLASEVA-----AIPEVRKALDERQR-E   61 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHH-------------HHHHHHhc-----ccHhHHHHHHHHHH-H
Confidence            58999999999999999999999999999995432110             00000000     00011111111000 0


Q ss_pred             ccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC--cCHHHHHHhh----chhhhhccCCccc
Q 003460          144 VIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDSI----FPLFRKHIEPDLH  217 (818)
Q Consensus       144 ~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~--~s~e~~~~~~----~p~~~~~Iep~~~  217 (818)
                      .   .....+|+||.++... +.+.+|++||+++|.+.+..|+..|+...+  .+.+++.+.+    .+.+..|+.++..
T Consensus        62 ~---~~~~~~Vidg~~~~~~-~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  137 (147)
T cd02020          62 L---AKKPGIVLEGRDIGTV-VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKL  137 (147)
T ss_pred             H---hhCCCEEEEeeeeeeE-EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccccC
Confidence            1   1123488899876432 245689999999999999999999764322  3666655433    5566778888764


Q ss_pred             c-CcEEEEC
Q 003460          218 H-AQIRINN  225 (818)
Q Consensus       218 ~-ADiII~N  225 (818)
                      . -|++|+.
T Consensus       138 ~~~dl~i~~  146 (147)
T cd02020         138 AEDAIVIDT  146 (147)
T ss_pred             CCCcEEEeC
Confidence            4 4577764

>TIGR00152 dephospho-CoA kinase

Probab=99.14  E-value=7.5e-11  Score=119.91  Aligned_cols=160  Identities=17%  Similarity=0.197  Sum_probs=104.2

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh----h-----h-hcc---cCCCcccccHHHHHHHHH----HHh
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE----Q-----V-KDF---KYDDFSSLDLSLLSKNIS----DIR  581 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~----~-----~-~~~---~~d~p~t~D~~ll~~~L~----~L~  581 (818)
                      +|||+|++||||||+++.|++..|+.++++|.+.+.-    .     . ..+   -++..+..|...|.+.+.    .+.
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~   80 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK   80 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence            5899999999999999999997679999999996541    0     0 111   123346777777776552    122


Q ss_pred             cCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch-
Q 003460          582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-  660 (818)
Q Consensus       582 ~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~-  660 (818)
                      .-+.+..|.+-........  .  ......++++|..+++...+...+|..++++++.++++.|.+.|+    |.+.+. 
T Consensus        81 ~le~ilhP~i~~~i~~~i~--~--~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~----~~s~~~~  152 (188)
T TIGR00152        81 WLNNLLHPLIREWMKKLLA--Q--FQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQLERLMQRD----NLTEEEV  152 (188)
T ss_pred             HHHHhhCHHHHHHHHHHHH--H--hhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHHHHHHHHcC----CCCHHHH
Confidence            2234455554333322110  0  011225889999888777788899999999999999999999998    333332 


Q ss_pred             hhHHHhhcchhhhhccccCCcccEEEeCCCC
Q 003460          661 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD  691 (818)
Q Consensus       661 ~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~  691 (818)
                      .+......+.+     ..+..||++|.|+.+
T Consensus       153 ~~r~~~q~~~~-----~~~~~ad~vI~N~~~  178 (188)
T TIGR00152       153 QKRLASQMDIE-----ERLARADDVIDNSAT  178 (188)
T ss_pred             HHHHHhcCCHH-----HHHHhCCEEEECCCC
Confidence            22333223222     335679999998743

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=99.11  E-value=8.8e-11  Score=110.11  Aligned_cols=116  Identities=25%  Similarity=0.344  Sum_probs=76.0

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcc--cccHHHHHHHHHHHhcCCceeccccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFS--SLDLSLLSKNISDIRNGRRTKVPIFDLETG  596 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~--t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~  596 (818)
                      +|+|+|+|||||||+|+.|++.+|+.++++|+++..........+.+.  ..+.+.+.+.+..+..              
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------------   66 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQN--------------   66 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHE--------------
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhc--------------
Confidence            689999999999999999999999999999995443222211111111  2234445555554322              


Q ss_pred             ccCCCcceeeecCCcEEEEEecccchHh-hhhcCCEEEEEEcChhHHHHHHHhcCccccCccc
Q 003460          597 ARSGFKELEVSEDCGVIIFEGVYALHPE-IRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM  658 (818)
Q Consensus       597 ~r~~~~~~~~~~~~~vvIvEG~~~~~~~-l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~  658 (818)
                                ....+.+|+||.+..... .....|..||++.+.+.++.|++.|...++|+..
T Consensus        67 ----------~~~~~~~ii~g~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~~~~~~r~~  119 (121)
T PF13207_consen   67 ----------KPDNDNWIIDGSYESEMEIRLPEFDHVIYLDAPDEECRERRLKRRLRRRGRDR  119 (121)
T ss_dssp             ----------TTT--EEEEECCSCHCCHSCCHHGGCEEEEEEEEHHHHHHHHHHHHHHEESSC
T ss_pred             ----------cCCCCeEEEeCCCccchhhhhhcCCEEEEEECCCHHHHHHHHHHHhHHcCCCC
Confidence                      123578999996651111 2234568899999888788888888777777653

...

>COG4240 Predicted kinase [General function prediction only]

Probab=99.09  E-value=3.4e-10  Score=114.39  Aligned_cols=107  Identities=21%  Similarity=0.341  Sum_probs=83.2

Q ss_pred             HHhcCCcEEEEEeCCCCCcHHHHHHHHHHHh---C---CeEEeccceecccc--------------cCCCCCcccHHHHH
Q 003460           56 REKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G---CTLISMENYRVGVD--------------EGNDLDSIDFDALV  115 (818)
Q Consensus        56 ~~~~~~~~iIgI~G~sGSGKSTlA~~La~~L---g---~~vI~~D~~~~~~~--------------~~~~~~~~d~~~l~  115 (818)
                      ..+.++|+++||+||.||||||++..|...|   |   +..+|.||||.+..              -++-|+++|...+.
T Consensus        44 ~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlgl  123 (300)
T COG4240          44 AQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGL  123 (300)
T ss_pred             hhhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHH
Confidence            3455679999999999999999999988766   3   45689999988543              24568999999999


Q ss_pred             HHHHhhhcCCc-cccccchh----hhhccccccccccCCccEEEEEecccch
Q 003460          116 QNLQDLTEGKD-TLIPMFDY----QQKNRIGSKVIKGASSGVVIVDGTYALD  162 (818)
Q Consensus       116 ~~L~~l~~~~~-i~~p~~d~----~~~~~~~~~~~~~~~~~vVIvEG~~l~~  162 (818)
                      ..|+.+.+|++ +.+|.||+    ..++|.........+.+++|+||+++..
T Consensus       124 nVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGf  175 (300)
T COG4240         124 NVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGF  175 (300)
T ss_pred             HHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeec
Confidence            99999988765 68899999    4555543323333447899999999865

>PRK06217 hypothetical protein; Validated

Probab=99.08  E-value=6.9e-10  Score=112.41  Aligned_cols=106  Identities=17%  Similarity=0.153  Sum_probs=72.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG  141 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~  141 (818)
                      |..|.|+|++||||||+|+.|++.+|++++++|+++..-.+......-..+...+.+..                     
T Consensus         1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------   59 (183)
T PRK06217          1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPPFTTKRPPEERLRLLLE---------------------   59 (183)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCCccccCCHHHHHHHHHH---------------------
Confidence            45699999999999999999999999999999999763221000000000111111110                     


Q ss_pred             ccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccC
Q 003460          142 SKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIG  192 (818)
Q Consensus       142 ~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~  192 (818)
                        .+.  ...-+|+||.+... ..+...+|.+|||++|.+.++.|...|...
T Consensus        60 --~~~--~~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~  107 (183)
T PRK06217         60 --DLR--PREGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREFQ  107 (183)
T ss_pred             --HHh--cCCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCccc
Confidence              000  11247889998754 556678999999999999999999998743

>TIGR00017 cmk cytidylate kinase

Probab=99.08  E-value=9.2e-10  Score=114.53  Aligned_cols=166  Identities=17%  Similarity=0.218  Sum_probs=99.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc----cCCCCCcccHHHHHHHHHhhh--------------cC
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD----EGNDLDSIDFDALVQNLQDLT--------------EG  124 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~----~~~~~~~~d~~~l~~~L~~l~--------------~~  124 (818)
                      ++|+|+|++||||||+++.|++.+|..++++|++|+...    ..+ ...-+...+...+..+.              .+
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   81 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNR-VDLTSEDALAELISHLDIRFIPTNGEVEVFLNG   81 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcC-CCCCCHHHHHHHHHhCCCEEecCCCceeEEEcC
Confidence            689999999999999999999999999999999987431    111 11112233333322110              00


Q ss_pred             Ccc-----------------ccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHH
Q 003460          125 KDT-----------------LIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKV  187 (818)
Q Consensus       125 ~~i-----------------~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri  187 (818)
                      +++                 .+|.+.........    ......-+|+||..+... +.+..|++||++++.+.+.+|+.
T Consensus        82 ~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr----~~a~~~~~Vi~Gr~~~~~-v~~~a~~~ifl~a~~~~Ra~Rr~  156 (217)
T TIGR00017        82 EDVSEAIRTQEVANAASKVAVFPKVREALLKRQQ----ALAKNDGIIADGRDIGTV-VFPNAEVKIFLDASVEERAKRRY  156 (217)
T ss_pred             cchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHH----HHhhcCCEEEEEcCcceE-EeCCCCEEEEEECCHHHHHHHHH
Confidence            010                 11111111111111    011223599999975543 33448999999999999999999


Q ss_pred             HhccCC--CcCHHHHHHhhch----hhhhccCCccccCcEEEECCCCCChhhh
Q 003460          188 QYDIGD--SCSLDSLIDSIFP----LFRKHIEPDLHHAQIRINNRFVSSFREA  234 (818)
Q Consensus       188 ~Rd~~~--~~s~e~~~~~~~p----~~~~~Iep~~~~ADiII~N~~~~~~~~~  234 (818)
                      .|....  ..+.+++.+.+..    ...+...|.....|.++.++-.+++++-
T Consensus       157 ~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~Idts~l~ieev  209 (217)
T TIGR00017       157 KQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLKKADDALYLDTSNLSIDEV  209 (217)
T ss_pred             HHHhccCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeEEEECCCCCHHHH
Confidence            987554  2455666655422    3444556776666666555545555443

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.07  E-value=6.3e-10  Score=107.62  Aligned_cols=142  Identities=18%  Similarity=0.220  Sum_probs=88.8

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR  598 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r  598 (818)
                      ||.|+|++||||||+|+.|+..+|.+++++|....... .......+   +...+.+.+.....                
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~-~~~~~~~~---~~~~i~~~l~~~~~----------------   60 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV-GKLASEVA---AIPEVRKALDERQR----------------   60 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHH-HHHHHHhc---ccHhHHHHHHHHHH----------------
Confidence            58999999999999999999999999999996544311 10000000   01111222221110                


Q ss_pred             CCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCcccc-Ccccch--hhHHHhhcchhhhhc
Q 003460          599 SGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM-GCFMSQ--NDIMMTVFPMFQQHI  675 (818)
Q Consensus       599 ~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~r-g~~~~~--~~~~~~v~p~~~~~I  675 (818)
                          ..   .....+|+||+++.+- +.+.+|+.||++++.+.+..|++.|+...+ |.+.+.  ..+...-.+.+..|+
T Consensus        61 ----~~---~~~~~~Vidg~~~~~~-~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  132 (147)
T cd02020          61 ----EL---AKKPGIVLEGRDIGTV-VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYV  132 (147)
T ss_pred             ----HH---hhCCCEEEEeeeeeeE-EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhccc
Confidence                00   1113478899987542 245689999999999999999999874322 333333  233344456678888


Q ss_pred             cccC-CcccEEEeC
Q 003460          676 EPHL-VHAHLKIRN  688 (818)
Q Consensus       676 ~p~~-~~ADivI~n  688 (818)
                      .++. ...|++|+.
T Consensus       133 ~~~~~~~~dl~i~~  146 (147)
T cd02020         133 APLKLAEDAIVIDT  146 (147)
T ss_pred             ccccCCCCcEEEeC
Confidence            8885 455688775

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.04  E-value=2.6e-10  Score=110.18  Aligned_cols=114  Identities=26%  Similarity=0.343  Sum_probs=83.5

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccccc
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA  597 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~  597 (818)
                      .+|.|+|++||||||+|+.|++.+|..++|...+|+.-... .+      +++..+.+.-        -..|.+|+....
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e-~g------msl~ef~~~A--------E~~p~iD~~iD~   65 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARE-RG------MSLEEFSRYA--------EEDPEIDKEIDR   65 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHH-cC------CCHHHHHHHH--------hcCchhhHHHHH
Confidence            36899999999999999999999999999999999863221 11      2333333211        136777777665


Q ss_pred             cCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCcc
Q 003460          598 RSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKS  652 (818)
Q Consensus       598 r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~  652 (818)
                      |..  +.  .. .+-+|+||-+++|-. +...|++||+.+|.++|..|-..|+..
T Consensus        66 rq~--e~--a~-~~nvVlegrLA~Wi~-k~~adlkI~L~Apl~vRa~Ria~REgi  114 (179)
T COG1102          66 RQK--EL--AK-EGNVVLEGRLAGWIV-REYADLKIWLKAPLEVRAERIAKREGI  114 (179)
T ss_pred             HHH--HH--HH-cCCeEEhhhhHHHHh-ccccceEEEEeCcHHHHHHHHHHhcCC
Confidence            542  11  12 467899999998722 267899999999999999999999843

>PRK04182 cytidylate kinase; Provisional

Probab=99.04  E-value=4.5e-10  Score=112.56  Aligned_cols=149  Identities=17%  Similarity=0.182  Sum_probs=82.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK  143 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~  143 (818)
                      +|+|+|++||||||+|+.|++.+|..++++|++++.........   ...+.+.      +.  ..+.++........ .
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~---~~~~~~~------~~--~~~~~~~~~~~~~~-~   69 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMS---LEEFNKY------AE--EDPEIDKEIDRRQL-E   69 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCC---HHHHHHH------hh--cCchHHHHHHHHHH-H
Confidence            79999999999999999999999999999988766443221111   1111110      00  01111111111110 0


Q ss_pred             ccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHH-HHHhhc---hhhhhcc---CCcc
Q 003460          144 VIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDS-LIDSIF---PLFRKHI---EPDL  216 (818)
Q Consensus       144 ~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~-~~~~~~---p~~~~~I---ep~~  216 (818)
                       . ......+|++|.+... .+.+..++.|||++|.+.+++|...|+......... +.+...   ..|..+.   .+..
T Consensus        70 -~-~~~~~~~Vi~g~~~~~-~~~~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~  146 (180)
T PRK04182         70 -I-AEKEDNVVLEGRLAGW-MAKDYADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDL  146 (180)
T ss_pred             -H-HhcCCCEEEEEeecce-EecCCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence             1 1012346678764422 112347899999999999999998886322111111 111111   1122222   3445


Q ss_pred             ccCcEEEECCC
Q 003460          217 HHAQIRINNRF  227 (818)
Q Consensus       217 ~~ADiII~N~~  227 (818)
                      +.||++|+++.
T Consensus       147 ~~~d~~idt~~  157 (180)
T PRK04182        147 SIYDLVINTSR  157 (180)
T ss_pred             ccccEEEECCC
Confidence            78999999874

>PRK06217 hypothetical protein; Validated

Probab=99.03  E-value=7.5e-10  Score=112.15  Aligned_cols=105  Identities=19%  Similarity=0.168  Sum_probs=74.1

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR  598 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r  598 (818)
                      .|.|+|++||||||+|+.|++.+|..++++|++++......  +...... -..+...+..+.                 
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~-----------------   62 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPP--FTTKRPP-EERLRLLLEDLR-----------------   62 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCC--ccccCCH-HHHHHHHHHHHh-----------------
Confidence            48899999999999999999999999999999997432111  1111111 111111122211                 


Q ss_pred             CCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccc
Q 003460          599 SGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSR  653 (818)
Q Consensus       599 ~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~  653 (818)
                                ..+-+|+||.+... ..+...+|..||+++|.+.++.|...|....
T Consensus        63 ----------~~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~  108 (183)
T PRK06217         63 ----------PREGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREFQR  108 (183)
T ss_pred             ----------cCCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCcccc
Confidence                      01347889998764 5567789999999999999999999997653

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.03  E-value=6.6e-10  Score=110.52  Aligned_cols=155  Identities=21%  Similarity=0.215  Sum_probs=86.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccc
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS  142 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~  142 (818)
                      ++|+|+|++||||||+|+.|++.+|+++++.|++++........   +...+.....   ..     |.+..........
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~---~~-----~~~~~~~~~~i~~   69 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGL---DLIEFLNYAE---EN-----PEIDKKIDRRIHE   69 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCC---CHHHHHHHHh---cC-----cHHHHHHHHHHHH
Confidence            37999999999999999999999999999998876543321111   1111111100   00     1111111111100


Q ss_pred             cccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHH-HHHhh---chhhhhcc---CCc
Q 003460          143 KVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDS-LIDSI---FPLFRKHI---EPD  215 (818)
Q Consensus       143 ~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~-~~~~~---~p~~~~~I---ep~  215 (818)
                       .  ......+|++|.+... .+...+|++|||++|.+.+.+|...|+......... +..+.   ...|..+.   .-.
T Consensus        70 -~--~~~~~~~Vi~g~~~~~-~~~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~  145 (171)
T TIGR02173        70 -I--ALKEKNVVLESRLAGW-IVREYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDD  145 (171)
T ss_pred             -H--HhcCCCEEEEecccce-eecCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence             0  0012357779976532 234568999999999999999999987432221111 11111   11122222   234


Q ss_pred             cccCcEEEECCCCCChhh
Q 003460          216 LHHAQIRINNRFVSSFRE  233 (818)
Q Consensus       216 ~~~ADiII~N~~~~~~~~  233 (818)
                      ...-|++|+++ ..++++
T Consensus       146 ~~~ydl~i~t~-~~~~~~  162 (171)
T TIGR02173       146 LSIYDLVINTS-NWDPNN  162 (171)
T ss_pred             cccccEEEECC-CCCHHH
Confidence            46678888776 445554

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=99.02  E-value=1.1e-09  Score=126.21  Aligned_cols=171  Identities=17%  Similarity=0.159  Sum_probs=101.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc---cCCCCCcccHHHHHHHHHhhh--------cCCcccc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD---EGNDLDSIDFDALVQNLQDLT--------EGKDTLI  129 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~---~~~~~~~~d~~~l~~~L~~l~--------~~~~i~~  129 (818)
                      ++.+|+|+|++||||||+|+.|++.||..++++|++|+.+.   .....+.-+...+...+..+.        .+..+..
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~i~~  362 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIELKPSSGSPQRVWI  362 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHHHHHHhcCCeeeccCCCCCceEEe
Confidence            55899999999999999999999999999999999999531   111122223333433333221        1123455


Q ss_pred             ccchhhhhccccc--------------------cccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHh
Q 003460          130 PMFDYQQKNRIGS--------------------KVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQY  189 (818)
Q Consensus       130 p~~d~~~~~~~~~--------------------~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~R  189 (818)
                      +.++....-+...                    .........-+|+||--+.. .+.+.+|++|||+|+.+.+.+||..+
T Consensus       363 ~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigt-vV~P~AdlKIfL~As~evRa~RR~~~  441 (512)
T PRK13477        363 NGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGT-HVFPDAELKIFLTASVEERARRRALD  441 (512)
T ss_pred             CCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEccccee-EEcCCCCEEEEEECCHHHHHHHHHhh
Confidence            5444332211100                    00000112248999986654 23356899999999999999998766


Q ss_pred             ccCCC---cCHHHHHH----hhchhhhhccCCcccc-CcEEEECCCCCChhh
Q 003460          190 DIGDS---CSLDSLID----SIFPLFRKHIEPDLHH-AQIRINNRFVSSFRE  233 (818)
Q Consensus       190 d~~~~---~s~e~~~~----~~~p~~~~~Iep~~~~-ADiII~N~~~~~~~~  233 (818)
                      .....   .+.+++.+    +......+.+.|.... ++++|+++. .++++
T Consensus       442 l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs~-lsiee  492 (512)
T PRK13477        442 LQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELITDG-LSIEE  492 (512)
T ss_pred             hhhCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEECCC-CCHHH
Confidence            32111   23444333    3344455556676665 567787773 44433

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=99.02  E-value=4.8e-10  Score=111.68  Aligned_cols=164  Identities=15%  Similarity=0.164  Sum_probs=111.6

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------h-hccc---CCCcccccHHHHHHHHH----HH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V-KDFK---YDDFSSLDLSLLSKNIS----DI  580 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~---------~-~~~~---~d~p~t~D~~ll~~~L~----~L  580 (818)
                      ++||++|++||||||+++.+. .+|+++|+.|...+.--         . ..+.   .-.-+.+|.+.|-+.+.    ..
T Consensus         2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r   80 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR   80 (225)
T ss_pred             eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence            799999999999999999998 68999999998876510         0 1111   11235667776666442    11


Q ss_pred             hcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch
Q 003460          581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ  660 (818)
Q Consensus       581 ~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~  660 (818)
                      ..-..+.+|..-+.......   ........++++|-.++|+..+.+.+-.+|.+.+|.++.++|.+.||...+..   .
T Consensus        81 ~~Ln~IthP~Ir~em~ke~~---~~~l~G~r~ivlDiPLLFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~d---A  154 (225)
T KOG3220|consen   81 QALNKITHPAIRKEMFKEIL---KLLLRGYRVIVLDIPLLFEAKLLKICHKTVVVTCDEELQLERLVERDELSEED---A  154 (225)
T ss_pred             HHHHhcccHHHHHHHHHHHH---HHHhcCCeEEEEechHHHHHhHHhheeeEEEEEECcHHHHHHHHHhccccHHH---H
Confidence            22234666665554322110   01234578999999999988888889999999999999999999998322111   1


Q ss_pred             hhHHHhhcchhhhhccccCCcccEEEeCCCCCc
Q 003460          661 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPV  693 (818)
Q Consensus       661 ~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~  693 (818)
                      ........|..++     .+.||+||+|+-++.
T Consensus       155 e~Rl~sQmp~~~k-----~~~a~~Vi~Nng~~~  182 (225)
T KOG3220|consen  155 ENRLQSQMPLEKK-----CELADVVIDNNGSLE  182 (225)
T ss_pred             HHHHHhcCCHHHH-----HHhhheeecCCCChH
Confidence            2344455555544     478999999987664

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=99.00  E-value=4.4e-10  Score=129.54  Aligned_cols=132  Identities=17%  Similarity=0.168  Sum_probs=90.0

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhh----hcccCCCcccccHHHHHHHHHHHh-----cCCce
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----KDFKYDDFSSLDLSLLSKNISDIR-----NGRRT  586 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~----~~~~~d~p~t~D~~ll~~~L~~L~-----~g~~v  586 (818)
                      ++.+|+|+||+||||||+|+.|++.||..+++.|++|+....    ...+++++.++  ..+.+.+....     .+..+
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~~~~i  360 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEAL--AELLSDLKIELKPSSGSPQRV  360 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHH--HHHHhcCCeeeccCCCCCceE
Confidence            567999999999999999999999999999999999997321    22344444432  33333333222     23468


Q ss_pred             ecccccccccccCCCcce-----e--------------eecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHH
Q 003460          587 KVPIFDLETGARSGFKEL-----E--------------VSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRV  647 (818)
Q Consensus       587 ~~P~yD~~~~~r~~~~~~-----~--------------~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri  647 (818)
                      .+|.||.+.+-|...-..     .              ......-+|+||--.+.--+ +..|++||++++.+.+..||.
T Consensus       361 ~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigtvV~-P~AdlKIfL~As~evRa~RR~  439 (512)
T PRK13477        361 WINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGTHVF-PDAELKIFLTASVEERARRRA  439 (512)
T ss_pred             EeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEcccceeEEc-CCCCEEEEEECCHHHHHHHHH
Confidence            889999887655421000     0              00112248999987765222 336999999999999999987


Q ss_pred             hcC
Q 003460          648 QRD  650 (818)
Q Consensus       648 ~Rd  650 (818)
                      .+.
T Consensus       440 ~~l  442 (512)
T PRK13477        440 LDL  442 (512)
T ss_pred             hhh
Confidence            663

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.97  E-value=1.1e-09  Score=102.61  Aligned_cols=104  Identities=27%  Similarity=0.362  Sum_probs=65.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEecccee--cccccCCCCCc----ccHHHHHHHHHhhhcCCccccccchhhhh
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYR--VGVDEGNDLDS----IDFDALVQNLQDLTEGKDTLIPMFDYQQK  137 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~--~~~~~~~~~~~----~d~~~l~~~L~~l~~~~~i~~p~~d~~~~  137 (818)
                      +|+|+|+|||||||+|+.|++.+|+.++++|+++  .++........    .+.+.+...+..+..              
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------------   66 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQN--------------   66 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHE--------------
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhc--------------
Confidence            6999999999999999999999999999999942  23332221111    111122222222111              


Q ss_pred             ccccccccccCCccEEEEEecccchhh-hhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          138 NRIGSKVIKGASSGVVIVDGTYALDAR-LRSLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       138 ~~~~~~~~~~~~~~vVIvEG~~l~~~~-l~~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                               ......+|+||.+..... .....|..||++++.+.+..|+++|.
T Consensus        67 ---------~~~~~~~ii~g~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~  111 (121)
T PF13207_consen   67 ---------KPDNDNWIIDGSYESEMEIRLPEFDHVIYLDAPDEECRERRLKRR  111 (121)
T ss_dssp             ---------TTT--EEEEECCSCHCCHSCCHHGGCEEEEEEEEHHHHHHHHHHH
T ss_pred             ---------cCCCCeEEEeCCCccchhhhhhcCCEEEEEECCCHHHHHHHHHHH
Confidence                     234568999997662212 22345788999999886666666664

...

>PRK08118 topology modulation protein; Reviewed

Probab=98.97  E-value=3.3e-09  Score=106.00  Aligned_cols=100  Identities=16%  Similarity=0.181  Sum_probs=69.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG  141 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~  141 (818)
                      |..|.|.|++||||||+|+.|++.+|+++++.|.++.... +...   ..+.+.+.+..+.                   
T Consensus         1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~-w~~~---~~~~~~~~~~~~~-------------------   57 (167)
T PRK08118          1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN-WEGV---PKEEQITVQNELV-------------------   57 (167)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC-CcCC---CHHHHHHHHHHHh-------------------
Confidence            3469999999999999999999999999999999764211 1000   1111111111111                   


Q ss_pred             ccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460          142 SKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       142 ~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                          .   ..-+|+||.+.-. +.....+|..|||++|.+.++.|.+.|..
T Consensus        58 ----~---~~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~  101 (167)
T PRK08118         58 ----K---EDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRRV  101 (167)
T ss_pred             ----c---CCCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH
Confidence                0   1238999988743 33446799999999999999999988853

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=98.96  E-value=1.1e-09  Score=123.92  Aligned_cols=159  Identities=15%  Similarity=0.169  Sum_probs=99.8

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch----hh-----h-hcc---cCCCcccccHHHHHHHHHH----H
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS----EQ-----V-KDF---KYDDFSSLDLSLLSKNISD----I  580 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~----~~-----~-~~~---~~d~p~t~D~~ll~~~L~~----L  580 (818)
                      .+|||+|++||||||+++.|++ +|+.++++|...+.    ..     . ..+   ..+..+++|...|.+.+..    +
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~   80 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR   80 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            4699999999999999999998 89999999988765    11     0 111   1223478888888876532    2


Q ss_pred             hcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch
Q 003460          581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ  660 (818)
Q Consensus       581 ~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~  660 (818)
                      +.-+.+.+|..-......     ........++++|..+++...+...+|..|||++|.+.++.|.+.|+    |.+.+.
T Consensus        81 ~~le~i~hP~I~~~i~~~-----i~~~~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri~Rl~~rR----g~s~~~  151 (395)
T PRK03333         81 AVLNGIVHPLVGARRAEL-----IAAAPEDAVVVEDIPLLVESGMAPLFHLVVVVDADVEVRVRRLVEQR----GMAEAD  151 (395)
T ss_pred             HHHHHhhhHHHHHHHHHH-----HHhcCCCCEEEEEeeeeecCCchhhCCEEEEEECCHHHHHHHHHhcC----CCCHHH
Confidence            222334455432211111     11112224555555555667788899999999999999999987753    433322


Q ss_pred             -hhHHHhhcchhhhhccccCCcccEEEeCCCC
Q 003460          661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD  691 (818)
Q Consensus       661 -~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~  691 (818)
                       ...+....+     .++....||++|+|+-+
T Consensus       152 a~~ri~~Q~~-----~e~k~~~AD~vIdN~~s  178 (395)
T PRK03333        152 ARARIAAQAS-----DEQRRAVADVWLDNSGT  178 (395)
T ss_pred             HHHHHHhcCC-----hHHHHHhCCEEEECCCC
Confidence             111221122     12336789999998754

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=98.95  E-value=3e-09  Score=128.04  Aligned_cols=188  Identities=12%  Similarity=0.083  Sum_probs=115.5

Q ss_pred             hhHHHHHHHHHHHHh-cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceeccc---ccCCCCCcccHHHHHHHHH
Q 003460           44 GYYLLVKSIQELREK-KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV---DEGNDLDSIDFDALVQNLQ  119 (818)
Q Consensus        44 ~~~~l~~~i~~~~~~-~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~---~~~~~~~~~d~~~l~~~L~  119 (818)
                      .|....+.+..+... .....+|+|+||+||||||+|+.|++.||..++++|.+|+..   ......+..|.+.+.+.+.
T Consensus       423 syP~F~~~l~~Lg~~~~~~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (661)
T PRK11860        423 TFPDYFEALFSVAQADADRVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALAR  502 (661)
T ss_pred             CCCChHHHHHHhcCCcccCcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHh
Confidence            333344444444332 233568999999999999999999999999999999999954   1222233335555555444


Q ss_pred             hhhc----------CCcccc-----------------ccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEE
Q 003460          120 DLTE----------GKDTLI-----------------PMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIR  172 (818)
Q Consensus       120 ~l~~----------~~~i~~-----------------p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~  172 (818)
                      .+..          ++++..                 |.++........    ......-+|+||--+.. .+.+.+|++
T Consensus       503 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr----~~~~~~~~v~eGRdigt-vv~p~a~~k  577 (661)
T PRK11860        503 GLPVRFEGDRIWLGGEDVTDAIRTEAAGMGASRVSALPAVRAALLALQR----SFRRLPGLVADGRDMGT-VIFPDAALK  577 (661)
T ss_pred             cCCeeecCCeEEECCeEchhhhCcHHHHHHHHHHhCCHHHHHHHHHHHH----HHhhCCCEEEECCCCcc-EECCCCCeE
Confidence            3211          111111                 111111111100    01112248999987654 344668999


Q ss_pred             EEEEcCHHHHHHHHHHhccCCC--cCHHHHHH----hhchhhhhccCCccccCcEEEECCCCCChhhhhh
Q 003460          173 VAVVGGVHFSLISKVQYDIGDS--CSLDSLID----SIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIY  236 (818)
Q Consensus       173 I~Vda~~e~~l~Rri~Rd~~~~--~s~e~~~~----~~~p~~~~~Iep~~~~ADiII~N~~~~~~~~~~~  236 (818)
                      ||++|+.++|.+||........  .+.+++.+    +-.....+.+.|.+...|.++.++-.+++++-+-
T Consensus       578 ifl~a~~~~Ra~Rr~~~~~~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~~~~~~v~~  647 (661)
T PRK11860        578 VFLTASAEARAERRYKQLISKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNSDLTIEQAVA  647 (661)
T ss_pred             EEEECChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCCCCHHHHHH
Confidence            9999999999999987543222  35555444    4456777788899888887776665666666543

>PRK06762 hypothetical protein; Provisional

Probab=98.93  E-value=1.2e-08  Score=101.45  Aligned_cols=134  Identities=18%  Similarity=0.139  Sum_probs=80.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh--CCeEEeccceecccc-cCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI--GCTLISMENYRVGVD-EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN  138 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L--g~~vI~~D~~~~~~~-~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~  138 (818)
                      +.+|+|+|++||||||+|+.|++.+  ++.+++.|.+++.+. ..+.++....+.+.+.....                 
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~~~~~~~~~~~~~~~~~-----------------   64 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGPGNLSIDLIEQLVRYG-----------------   64 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCCCCCcCHHHHHHHHHHH-----------------
Confidence            4789999999999999999999998  577889998876432 12233333333222211110                 


Q ss_pred             cccccccccCCccEEEEEecccch------hhhhcCC---CEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhh
Q 003460          139 RIGSKVIKGASSGVVIVDGTYALD------ARLRSLL---DIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFR  209 (818)
Q Consensus       139 ~~~~~~~~~~~~~vVIvEG~~l~~------~~l~~~~---D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~  209 (818)
                              ......+|+|+.+.-.      ..+....   ...||+++|.+++++|...|......+ ++.++.++...+
T Consensus        65 --------~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~-~~~l~~~~~~~~  135 (166)
T PRK06762         65 --------LGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFG-EDDMRRWWNPHD  135 (166)
T ss_pred             --------HhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCC-HHHHHHHHhhcC
Confidence                    1123468888886422      2233222   378999999999999999887533233 333333322222


Q ss_pred             hccCCccccCcEEEECC
Q 003460          210 KHIEPDLHHAQIRINNR  226 (818)
Q Consensus       210 ~~Iep~~~~ADiII~N~  226 (818)
                      .   +  ..++.+|+++
T Consensus       136 ~---~--~~~~~~~~~~  147 (166)
T PRK06762        136 T---L--GVIGETIFTD  147 (166)
T ss_pred             C---c--CCCCeEEecC
Confidence            1   1  2356677655

>cd07756 CYTH-like_Pase_CHAD Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain

Probab=98.93  E-value=3.6e-09  Score=108.32  Aligned_cols=126  Identities=13%  Similarity=0.069  Sum_probs=96.7

Q ss_pred             cccccceeeccCCCCCcchhhhccCCeeeEeeeCCEEEEEEcceeecCCCcccCceeEEEEec----c---------HHH
Q 003460          256 NEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----M---------TLG  322 (818)
Q Consensus       256 ~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~---------~~~  322 (818)
                      ...+.++|||+|+++++..+.++     |||+.+++..+|+|++....+++  +.|.|+|+.|    .         +..
T Consensus        32 ~~~l~~~YfDTpd~~L~~~~~aL-----RiR~~~~~~~~TlK~~~~~~~g~--~~R~E~e~~l~~~~~~l~~~~~~~~~~  104 (197)
T cd07756          32 TRRLHNTYFDTPDLALRRAGIAL-----RVRREGGQWVQTLKTAGSVVGGL--HQRPEWEVPLPGPAPDLDLASILPDGE  104 (197)
T ss_pred             eeeeeeeeeeCcChHHHhCCCEE-----EEEeeCCeEEEEEeeCCcCCCCc--ccceeEcccCCCCCcCcchhhcCCccc
Confidence            45688999999999999999999     99999999999999886444554  7999999999    1         556


Q ss_pred             HHHhcC----CceeEEEEEEEEEEEeCC----EEEEEec--cC--CCCCCeEEEEec----CHHHHHHHH----HHcCCC
Q 003460          323 GLLDLG----YSVVASYKRASTYVVYGN----LSVSFET--ID--TLDETFMVLRGT----NRKTVGAEA----LRMGIN  382 (818)
Q Consensus       323 ~L~~LG----f~~~~~~~K~R~~~~~~~----~~i~lD~--v~--~lg~~fvEiE~~----~~~~i~~~~----~~Lgl~  382 (818)
                      ++.+++    +.|++++++.|+.|.+..    ++|++|.  |.  +--.|.-|||..    +...+.++|    ...|+.
T Consensus       105 ~~~~l~~~~~L~pvf~t~~~R~~~~l~~~~~~iEvalD~G~i~a~~~~~~i~EiElELk~G~~~~L~~la~~l~~~~~l~  184 (197)
T cd07756         105 LLEALAALAALVPLFTTDFERTVWLLRLGGSEIEVALDQGEIRAGDRSEPICEIELELKSGDPAALFALARRLAERLPLR  184 (197)
T ss_pred             CHhhhhccCCceEEEEEEEEEEEEEEcCCCcEEEEEEeeeEEEeCCCccceEeEEEEecCCCHHHHHHHHHHHHHhCCcc
Confidence            778884    999999999999999844    9999999  43  222357677655    445554444    445665


Q ss_pred             CCccch
Q 003460          383 GPWITK  388 (818)
Q Consensus       383 ~~~~~~  388 (818)
                      .....|
T Consensus       185 ~~~~SK  190 (197)
T cd07756         185 LSNRSK  190 (197)
T ss_pred             CCCcCH
Confidence            544443

This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosp

>PRK07261 topology modulation protein; Provisional

Probab=98.91  E-value=6.5e-09  Score=104.24  Aligned_cols=99  Identities=20%  Similarity=0.284  Sum_probs=71.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK  143 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~  143 (818)
                      .|+|.|++||||||+|+.|++.+|.++++.|.++.... +   ...+.+.+.+.+..+.                     
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-~---~~~~~~~~~~~~~~~~---------------------   56 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-W---QERDDDDMIADISNFL---------------------   56 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-c---ccCCHHHHHHHHHHHH---------------------
Confidence            58999999999999999999999999999999764211 1   1112222333222111                     


Q ss_pred             ccccCCccEEEEEecccch--hhhhcCCCEEEEEEcCHHHHHHHHHHhccC
Q 003460          144 VIKGASSGVVIVDGTYALD--ARLRSLLDIRVAVVGGVHFSLISKVQYDIG  192 (818)
Q Consensus       144 ~~~~~~~~vVIvEG~~l~~--~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~  192 (818)
                          .... +|+||.+.-.  +.....+|.+||++.|...++.|.++|...
T Consensus        57 ----~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~  102 (171)
T PRK07261         57 ----LKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLK  102 (171)
T ss_pred             ----hCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHH
Confidence                1122 8999998752  444467999999999999999999999754

>PRK00023 cmk cytidylate kinase; Provisional

Probab=98.90  E-value=4.8e-09  Score=109.88  Aligned_cols=172  Identities=15%  Similarity=0.160  Sum_probs=95.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceeccccc---CCCCCcccHHHHHHHHHhhhcC-------Ccccccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE---GNDLDSIDFDALVQNLQDLTEG-------KDTLIPM  131 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~---~~~~~~~d~~~l~~~L~~l~~~-------~~i~~p~  131 (818)
                      +.+|+|+|++||||||+|+.|++.+|+.++++|.+|+....   ....+..+.+.+.+.+..+...       ..+.+..
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVDLEDEEALVALAAHLDISFESDPGGQRVFLNG   83 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCCCCCHHHHHHHHhcCCeEEecCCCcceEEECC
Confidence            47899999999999999999999999999999999885321   1122222333343332221110       0011000


Q ss_pred             -----------chhh-----hhccccccc----cccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460          132 -----------FDYQ-----QKNRIGSKV----IKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       132 -----------~d~~-----~~~~~~~~~----~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                                 ++..     ..+.+....    .......-+|++|...... +.+..+++|||++|.+.+..|+..+..
T Consensus        84 ~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~~q~~ia~~~~~Vi~GR~~~~~-vl~~a~~~ifl~a~~e~R~~Rr~~~~~  162 (225)
T PRK00023         84 EDVTDEIRTEEVGNAASKVAAIPEVREALVERQRAFAREPGLVMDGRDIGTV-VFPDAELKIFLTASAEERAERRYKELQ  162 (225)
T ss_pred             cchHHhhChHHHHHHHHHHcCCHHHHHHHHHHHHHHhhCCCEEEEecChheE-EeCCCCEEEEEECCHHHHHHHHHHHHH
Confidence                       0000     000000000    0011223588999864432 334489999999999999888877643


Q ss_pred             CC--CcCHHHHHHh----hchhhhhccCCccccCc-EEEECCCCCChhhhh
Q 003460          192 GD--SCSLDSLIDS----IFPLFRKHIEPDLHHAQ-IRINNRFVSSFREAI  235 (818)
Q Consensus       192 ~~--~~s~e~~~~~----~~p~~~~~Iep~~~~AD-iII~N~~~~~~~~~~  235 (818)
                      ..  ..+.+++.+.    -.....+++.|.+..+| ++|+++ ..++++..
T Consensus       163 ~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~IDTs-~l~~ee~v  212 (225)
T PRK00023        163 AKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALLLDTS-GLSIEEVV  212 (225)
T ss_pred             hcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEEEECC-CCCHHHHH
Confidence            32  1344443332    22233455677777777 555555 45554443

>PRK08118 topology modulation protein; Reviewed

Probab=98.89  E-value=4.5e-09  Score=104.99  Aligned_cols=103  Identities=17%  Similarity=0.158  Sum_probs=73.6

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR  598 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r  598 (818)
                      -|.|.|++||||||+|+.|++.++.+++++|+.++..     +|....   -+...+.+..+.+                
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~-----~w~~~~---~~~~~~~~~~~~~----------------   58 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP-----NWEGVP---KEEQITVQNELVK----------------   58 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc-----CCcCCC---HHHHHHHHHHHhc----------------
Confidence            4788999999999999999999999999999988631     121111   1122222222111                


Q ss_pred             CCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCc
Q 003460          599 SGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC  656 (818)
Q Consensus       599 ~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~  656 (818)
                                 .+-+|+||.+... +...+..|..||+++|.+.++.|.+.|....+|.
T Consensus        59 -----------~~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~g~  106 (167)
T PRK08118         59 -----------EDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRRVQYRGK  106 (167)
T ss_pred             -----------CCCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHHHcCC
Confidence                       1237899988743 4445679999999999999999999997765554

>PRK07261 topology modulation protein; Provisional

Probab=98.88  E-value=5.3e-09  Score=104.89  Aligned_cols=105  Identities=24%  Similarity=0.255  Sum_probs=77.7

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR  598 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r  598 (818)
                      .|+|.|++||||||||+.|+..++..++++|++++...     +.   ..+.+.+.+.+..+.                 
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----~~---~~~~~~~~~~~~~~~-----------------   56 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----WQ---ERDDDDMIADISNFL-----------------   56 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----cc---cCCHHHHHHHHHHHH-----------------
Confidence            47899999999999999999999999999999876321     21   122333333333311                 


Q ss_pred             CCCcceeeecCCcEEEEEecccc-h-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCccc
Q 003460          599 SGFKELEVSEDCGVIIFEGVYAL-H-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM  658 (818)
Q Consensus       599 ~~~~~~~~~~~~~vvIvEG~~~~-~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~  658 (818)
                               .... +|+||.|.- . +...+.+|..||++.|...++.|.+.|+...+|...
T Consensus        57 ---------~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~rg~~r  108 (171)
T PRK07261         57 ---------LKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKYRGKTR  108 (171)
T ss_pred             ---------hCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHHcCCcC
Confidence                     1123 899999975 2 555567999999999999999999999987777653

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.87  E-value=1.4e-08  Score=123.32  Aligned_cols=173  Identities=16%  Similarity=0.149  Sum_probs=108.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc-----cCCCCC--cccHHHHHHHHHhhhcCCcccc------
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-----EGNDLD--SIDFDALVQNLQDLTEGKDTLI------  129 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~-----~~~~~~--~~d~~~l~~~L~~l~~~~~i~~------  129 (818)
                      .+|+|+|++||||||+|+.||+.||+.+++++.+|+...     .....+  ..|.+.+...+..+..+..+.+      
T Consensus         2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (712)
T PRK09518          2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEFFTGLHFDISVDPDS   81 (712)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHhCCcEEEecCCCC
Confidence            589999999999999999999999999999999998532     111121  2233444444443322111110      


Q ss_pred             -----------------------------ccchhhhhccccccccccCC-------ccEEEEEecccchhhhhcCCCEEE
Q 003460          130 -----------------------------PMFDYQQKNRIGSKVIKGAS-------SGVVIVDGTYALDARLRSLLDIRV  173 (818)
Q Consensus       130 -----------------------------p~~d~~~~~~~~~~~~~~~~-------~~vVIvEG~~l~~~~l~~~~D~~I  173 (818)
                                                   |.+......... .......       ..-+|+||--+.. .+.+.+|++|
T Consensus        82 ~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~qr-~~~~~~~~~~~~~~~~~~v~eGRdigt-vv~p~a~~K~  159 (712)
T PRK09518         82 PGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQR-AYIAREASADSFSGGLGIVAEGRDITT-VVAPDAEVRI  159 (712)
T ss_pred             cEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHHHH-HHHhhcCccccccccCcEEEecCccce-EEecCCCeEE
Confidence                                         000000000000 0000111       1259999987765 3346689999


Q ss_pred             EEEcCHHHHHHHHHHhccCCCcCHHHHHH----hhchhhhhccCCccccCcEEEECCCCCChhhhhhcccC
Q 003460          174 AVVGGVHFSLISKVQYDIGDSCSLDSLID----SIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKC  240 (818)
Q Consensus       174 ~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~----~~~p~~~~~Iep~~~~ADiII~N~~~~~~~~~~~~l~~  240 (818)
                      |++|+.++|.+||..+...  .+.+++.+    +-.... +.+.|.....|.++.++..+++++-+-.+..
T Consensus       160 ~l~A~~~~Ra~Rr~~~~~~--~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~da~~idts~~~~~~v~~~i~~  227 (712)
T PRK09518        160 LLTAREEVRQARRSGQDRS--ETPGVVLEDVAARDEADS-KVTSFLSAADGVTTLDNSDLDFDETLDLLIG  227 (712)
T ss_pred             EEECCHHHHHHHHHHhhhc--CCHHHHHHHHHHHhhhcc-cccCCCCCCCCeEEEECCCCCHHHHHHHHHH
Confidence            9999999999999998754  44444443    445556 7788988888877766667777766544444

>cd07891 CYTH-like_CthTTM-like_1 CYTH-like Clostridium thermocellum TTM-like subgroup 1

Probab=98.86  E-value=9.7e-09  Score=100.34  Aligned_cols=85  Identities=15%  Similarity=0.110  Sum_probs=69.9

Q ss_pred             chhhhccCCeeeEeeeCCEEEEEEcceeecCCCcccCceeEEEEec---cHHHHHHhcCCceeEEEEEEEEEEEeCCEEE
Q 003460          273 ATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---MTLGGLLDLGYSVVASYKRASTYVVYGNLSV  349 (818)
Q Consensus       273 ~~dea~~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v---~~~~~L~~LGf~~~~~~~K~R~~~~~~~~~i  349 (818)
                      ..++++     |||..++++.||||||+.   +   ++|.|+|+.|   ...+++.   +.....++|.|..|.+++..+
T Consensus        32 ~~~~~l-----RiR~~~~~~~lT~K~~~~---~---~~R~E~E~~i~~~~~~~l~~---~~~~~~I~K~R~~~~~~~~~~   97 (148)
T cd07891          32 DPERTV-----RVRIAGDRAYLTIKGPTN---G---LSRYEFEYEIPLADAEELLA---LCEGPVIEKTRYRVPHGGHTW   97 (148)
T ss_pred             CCCcEE-----EEEEeCCEEEEEEEeCCC---C---ceEEEEEEeCCHHHHHHHHh---cCCCCeEEEEEEEEEeCCEEE
Confidence            344567     999999999999998864   2   5899999999   3333443   677899999999999999999


Q ss_pred             EEeccCCCCCC--eEEEEecCHHH
Q 003460          350 SFETIDTLDET--FMVLRGTNRKT  371 (818)
Q Consensus       350 ~lD~v~~lg~~--fvEiE~~~~~~  371 (818)
                      +||.++|+|.+  |+|||..+++.
T Consensus        98 ~lD~~~g~~~gL~~~EiE~~~e~~  121 (148)
T cd07891          98 EVDVFHGENAGLVVAEIELPSEDE  121 (148)
T ss_pred             EEEEEcCCCCceEEEEEEcCCccc
Confidence            99999999875  99999986543

This subgroup contains the triphosphate tunnel metalloenzyme (TTM) from Clostridium thermocellum (CthTTM) and similar proteins. These are found primarily in bacteria. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. These enzymes are members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily, which have a unique active site located within an eight-stranded beta barrel.

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=98.83  E-value=1e-08  Score=101.94  Aligned_cols=114  Identities=22%  Similarity=0.287  Sum_probs=69.3

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccccc
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA  597 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~  597 (818)
                      .+|+|+|++||||||+|+.|++.+|..+++.|++++.... ..+.      +...+....   ..     .|.++.....
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~-~~g~------~~~~~~~~~---~~-----~~~~~~~~~~   65 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAA-KMGL------DLIEFLNYA---EE-----NPEIDKKIDR   65 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHH-HcCC------CHHHHHHHH---hc-----CcHHHHHHHH
Confidence            3799999999999999999999999999999988764211 1111      111100000   00     0000000000


Q ss_pred             cCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCc
Q 003460          598 RSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDK  651 (818)
Q Consensus       598 r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~  651 (818)
                      +.    .......+.+|+||.+..+ .+.+..|+.|||++|.+++..|...|+.
T Consensus        66 ~i----~~~~~~~~~~Vi~g~~~~~-~~~~~~d~~v~v~a~~~~r~~R~~~R~~  114 (171)
T TIGR02173        66 RI----HEIALKEKNVVLESRLAGW-IVREYADVKIWLKAPLEVRARRIAKREG  114 (171)
T ss_pred             HH----HHHHhcCCCEEEEecccce-eecCCcCEEEEEECCHHHHHHHHHHccC
Confidence            00    0001112457779988654 1245678999999999999999998863

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK08356 hypothetical protein; Provisional

Probab=98.82  E-value=2.4e-08  Score=102.20  Aligned_cols=152  Identities=16%  Similarity=0.149  Sum_probs=83.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-CCCcc----cHH------HHHHHH--HhhhcCCcc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-DLDSI----DFD------ALVQNL--QDLTEGKDT  127 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-~~~~~----d~~------~l~~~L--~~l~~~~~i  127 (818)
                      ..++|+|+|++||||||+|+.|++ +|..+|++++..+...... ....|    .+.      .+.+.-  ..-..|.++
T Consensus         4 ~~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~   82 (195)
T PRK08356          4 EKMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI   82 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence            346899999999999999999975 8999999998654211111 11111    111      111100  000001111


Q ss_pred             ccccchhhhhccccccccccCCccEEEEEecccch--hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC---cCHHHHHH
Q 003460          128 LIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD--ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS---CSLDSLID  202 (818)
Q Consensus       128 ~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~--~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~---~s~e~~~~  202 (818)
                      ..    ......     .  .....++++|.-...  ..+.......|||+++.+.+..|...|+...+   .+.+++.+
T Consensus        83 ~~----~~~~~~-----~--~~~~~ividG~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~  151 (195)
T PRK08356         83 LI----RLAVDK-----K--RNCKNIAIDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLK  151 (195)
T ss_pred             HH----HHHHHH-----h--ccCCeEEEcCcCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHH
Confidence            00    000000     1  112258999995544  23445457899999999999888888875433   14444432


Q ss_pred             hh---chhhhhccCCccccCcEEEECC
Q 003460          203 SI---FPLFRKHIEPDLHHAQIRINNR  226 (818)
Q Consensus       203 ~~---~p~~~~~Iep~~~~ADiII~N~  226 (818)
                      ..   ...|..  .-..+.||++|.|+
T Consensus       152 ~~~~~~~l~~~--~~~~~~aD~vI~N~  176 (195)
T PRK08356        152 FDEWEEKLYHT--TKLKDKADFVIVNE  176 (195)
T ss_pred             HHHHHHHhhhh--hhHHHhCcEEEECC
Confidence            21   121111  22347899999985

>KOG2878 consensus Predicted kinase [General function prediction only]

Probab=98.78  E-value=2.2e-08  Score=99.57  Aligned_cols=101  Identities=24%  Similarity=0.338  Sum_probs=77.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh--------CCeEEeccceeccccc----------------CCCCCcccHHHHHHH
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI--------GCTLISMENYRVGVDE----------------GNDLDSIDFDALVQN  117 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L--------g~~vI~~D~~~~~~~~----------------~~~~~~~d~~~l~~~  117 (818)
                      |++||++||.||||||++-+|-..+        .+..+|.||||...++                ++-++++|+..+.+.
T Consensus        31 Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~npnN~Llq~RGlaGtHD~kll~ev  110 (282)
T KOG2878|consen   31 PLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKNPNNALLQYRGLAGTHDLKLLVEV  110 (282)
T ss_pred             cEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeeechhHHHHHhhCCCChhhccCCCCCcccHHHHHHH
Confidence            8999999999999999999886644        2567999999885332                355789999999999


Q ss_pred             HHhhhcCC----ccccccchhhh----hcccc-ccccccCCccEEEEEecccch
Q 003460          118 LQDLTEGK----DTLIPMFDYQQ----KNRIG-SKVIKGASSGVVIVDGTYALD  162 (818)
Q Consensus       118 L~~l~~~~----~i~~p~~d~~~----~~~~~-~~~~~~~~~~vVIvEG~~l~~  162 (818)
                      |+.+..+.    .+.+|.|++..    ++|.. .+.....+..++|+||+++..
T Consensus       111 Lna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF  164 (282)
T KOG2878|consen  111 LNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGF  164 (282)
T ss_pred             HHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccc
Confidence            88876543    47889999864    34432 233344467899999999865

>cd07374 CYTH-like_Pase CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) Phosphatases

Probab=98.77  E-value=2.3e-08  Score=100.38  Aligned_cols=101  Identities=8%  Similarity=-0.023  Sum_probs=79.2

Q ss_pred             cccccccceeeccCCCCCcchhhhccCCeeeEeee--CCEEEEEEcceeecCCCcccCceeEEEEec----cHH------
Q 003460          254 QGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQS--GIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTL------  321 (818)
Q Consensus       254 ~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~--~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~------  321 (818)
                      .....+.|+|||+|++.  ..+.++     |||..  ++++.+|+|++.-.      +.|.|+|+.|    .+.      
T Consensus        29 ~~~~~~~~~YfDT~d~~--l~~~~l-----rlR~r~~~~~~~~TlK~~~~~------~~r~E~e~~l~~~~~~~~~~~~~   95 (174)
T cd07374          29 PETVQLRAIYFDTPDLR--LARAGL-----RLRRRTGGADAGWHLKLPGGI------SRRTEVRAPLGDAAAVAPLLLAA   95 (174)
T ss_pred             ccceeeeeeEecCccch--hhhCCc-----EEEEEcCCCccEEEEEccCCC------CCceEEEeecCCccCCcccccch
Confidence            34567899999999983  334555     66644  55889999976532      5789999999    222      


Q ss_pred             ----HHHHhcCCceeEEEEEEEEEEEeC-----CEEEEEeccCC-------CCCCeEEEEecC
Q 003460          322 ----GGLLDLGYSVVASYKRASTYVVYG-----NLSVSFETIDT-------LDETFMVLRGTN  368 (818)
Q Consensus       322 ----~~L~~LGf~~~~~~~K~R~~~~~~-----~~~i~lD~v~~-------lg~~fvEiE~~~  368 (818)
                          .++..+||.|++++.+.|+.|.++     .++|+||.++.       .++ ++|+|.++
T Consensus        96 ~~~~~~~~~~~l~p~~~~~~~R~~~~l~~~~~~~iei~lD~~~~~~~~~~~~~~-e~E~El~~  157 (174)
T cd07374          96 ALVLAVTRGLPLRPVATIETTRTVYRLLDAGGVLAELDLDTVTARVLDGGGTQY-WREVEVEL  157 (174)
T ss_pred             hheeeecCCCCceEEEEEEEEEEEEEecCCCceEEEEEecEEEEEEcCCCcceE-EEEEEEEE
Confidence                356779999999999999999987     49999999986       677 99999983

CYTH-like superfamily enzymes hydrolyze triphosphate-containing substrates and require metal cations as cofactors. They have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB), and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions.

>PRK01184 hypothetical protein; Provisional

Probab=98.77  E-value=2e-08  Score=101.60  Aligned_cols=155  Identities=21%  Similarity=0.212  Sum_probs=84.0

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhc--CCceecccccccc
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRN--GRRTKVPIFDLET  595 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~--g~~v~~P~yD~~~  595 (818)
                      .+|+|+|++||||||+++ +++.+|+.++++||..+..-.. .+.....    +.+.+....++.  +..+    +...+
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~-~~~~~~~----~~~g~~~~~~~~~~~~~~----~~~~~   71 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKK-RGLEPTD----ENIGKVAIDLRKELGMDA----VAKRT   71 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHH-cCCCCCc----HHHHHHHHHHHHHHChHH----HHHHH
Confidence            589999999999999987 6778999999999887753211 1111111    111111111111  0000    00001


Q ss_pred             cccCCCcceeeecCCcEEEEEecccch--HhhhhcCC---EEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcch
Q 003460          596 GARSGFKELEVSEDCGVIIFEGVYALH--PEIRKSLD---LWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPM  670 (818)
Q Consensus       596 ~~r~~~~~~~~~~~~~vvIvEG~~~~~--~~l~~~~D---~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~  670 (818)
                      +...     . ..+..++|++|+....  ..+++.++   ..|+++++.+.++.|...|+....+.+.+  ++.......
T Consensus        72 ~~~i-----~-~~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~--~~~~r~~~q  143 (184)
T PRK01184         72 VPKI-----R-EKGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWE--ELEERDERE  143 (184)
T ss_pred             HHHH-----H-hcCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHH--HHHHHHHHH
Confidence            1111     0 0234789999985432  34555555   89999999999999998886322122221  111111100


Q ss_pred             hhhhccccCCcccEEEeCCC
Q 003460          671 FQQHIEPHLVHAHLKIRNDF  690 (818)
Q Consensus       671 ~~~~I~p~~~~ADivI~n~~  690 (818)
                      ...=+.+....||++|+|+-
T Consensus       144 ~~~~~~~~~~~ad~vI~N~~  163 (184)
T PRK01184        144 LSWGIGEVIALADYMIVNDS  163 (184)
T ss_pred             hccCHHHHHHhcCEEEeCCC
Confidence            00001223367999999864

>PRK13949 shikimate kinase; Provisional

Probab=98.76  E-value=2.4e-08  Score=99.96  Aligned_cols=142  Identities=18%  Similarity=0.107  Sum_probs=77.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCC---CcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDL---DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR  139 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~---~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~  139 (818)
                      ..|.|.|++||||||+++.|++.+|+.++++|.+........-.   .....+.+.+.-..                  .
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~------------------~   63 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERN------------------M   63 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHH------------------H
Confidence            46999999999999999999999999999999875421111000   00111111111000                  0


Q ss_pred             ccccccccCCccEEEEEecccch----hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC-----cCHHHHHHhhchhhhh
Q 003460          140 IGSKVIKGASSGVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-----CSLDSLIDSIFPLFRK  210 (818)
Q Consensus       140 ~~~~~~~~~~~~vVIvEG~~l~~----~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-----~s~e~~~~~~~p~~~~  210 (818)
                      . .. +. .....||..|.+...    ..+....+++|||+++.+..++|...+. ..+     .+.+++.+.+...|.+
T Consensus        64 l-~~-l~-~~~~~vis~Ggg~~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri~~~~-~~RP~~~~~~~~~~~~~i~~l~~~  139 (169)
T PRK13949         64 L-HE-VA-EFEDVVISTGGGAPCFFDNMELMNASGTTVYLKVSPEVLFVRLRLAK-QQRPLLKGKSDEELLDFIIEALEK  139 (169)
T ss_pred             H-HH-HH-hCCCEEEEcCCcccCCHHHHHHHHhCCeEEEEECCHHHHHHHHhcCC-CCCCCCCCCChHHHHHHHHHHHHH
Confidence            0 00 11 112356667665543    2334457999999999999766654221 112     2223333222233333


Q ss_pred             ccCCccccCcEEEECCC
Q 003460          211 HIEPDLHHAQIRINNRF  227 (818)
Q Consensus       211 ~Iep~~~~ADiII~N~~  227 (818)
                      +...+.+ ||++|+.+.
T Consensus       140 R~~~Y~~-ad~~id~~~  155 (169)
T PRK13949        140 RAPFYRQ-AKIIFNADK  155 (169)
T ss_pred             HHHHHHh-CCEEEECCC
Confidence            3332333 899998763

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.74  E-value=1.1e-08  Score=101.80  Aligned_cols=40  Identities=20%  Similarity=0.249  Sum_probs=36.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG   99 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~   99 (818)
                      +.+..|.|+|++||||||+|+.|++.+|..+++.|.+...
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~   41 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEA   41 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence            4567899999999999999999999999999999997653

>PLN02200 adenylate kinase family protein

Probab=98.73  E-value=4.3e-08  Score=103.30  Aligned_cols=121  Identities=12%  Similarity=0.074  Sum_probs=73.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR  139 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~  139 (818)
                      +.+++|.|+|++||||||+|+.|++.+|+.+|+++++.+.......+   +...+...   +..|..+.-..........
T Consensus        41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~---~~~~i~~~---~~~G~~vp~e~~~~~l~~~  114 (234)
T PLN02200         41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSE---HGAMILNT---IKEGKIVPSEVTVKLIQKE  114 (234)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccCh---hHHHHHHH---HHcCCCCcHHHHHHHHHHH
Confidence            34689999999999999999999999999999999886532211111   11122222   2233321111111111111


Q ss_pred             ccccccccCCccEEEEEecccch-------hhhhcCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460          140 IGSKVIKGASSGVVIVDGTYALD-------ARLRSLLDIRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       140 ~~~~~~~~~~~~vVIvEG~~l~~-------~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                      .     ......-+|+||..--.       ..+....|.+||++++.++.+.|...|..
T Consensus       115 l-----~~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~  168 (234)
T PLN02200        115 M-----ESSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQ  168 (234)
T ss_pred             H-----hcCCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcC
Confidence            1     11123458999964322       11223578999999999999999888853

>PRK04182 cytidylate kinase; Provisional

Probab=98.72  E-value=2.9e-08  Score=99.48  Aligned_cols=112  Identities=28%  Similarity=0.352  Sum_probs=67.3

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR  598 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r  598 (818)
                      +|+|+|++||||||+|+.|++.+|..++++|++++..... .+.      +...+.+.      ++  ..|.++......
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~-~g~------~~~~~~~~------~~--~~~~~~~~~~~~   66 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKE-RGM------SLEEFNKY------AE--EDPEIDKEIDRR   66 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHH-cCC------CHHHHHHH------hh--cCchHHHHHHHH
Confidence            7999999999999999999999999999999887752211 111      11111110      00  011111111100


Q ss_pred             CCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcC
Q 003460          599 SGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       599 ~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                      .    .........+|++|.+..+ .+.+..++.||+++|.+.++.|...|+
T Consensus        67 ~----~~~~~~~~~~Vi~g~~~~~-~~~~~~~~~V~l~a~~e~~~~Rl~~r~  113 (180)
T PRK04182         67 Q----LEIAEKEDNVVLEGRLAGW-MAKDYADLKIWLKAPLEVRAERIAERE  113 (180)
T ss_pred             H----HHHHhcCCCEEEEEeecce-EecCCCCEEEEEECCHHHHHHHHHhcc
Confidence            0    0011012346778876543 112337899999999999999988875

>PRK00023 cmk cytidylate kinase; Provisional

Probab=98.72  E-value=1.9e-08  Score=105.44  Aligned_cols=132  Identities=14%  Similarity=0.165  Sum_probs=74.2

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcC-----Cceecccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNG-----RRTKVPIF  591 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g-----~~v~~P~y  591 (818)
                      +.+|+|+|++||||||+|+.|++.+|..+++.|++|+.........+-+ -.|.+.+.+.+..+...     ....+...
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVD-LEDEEALVALAAHLDISFESDPGGQRVFLN   82 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCC-CCCHHHHHHHHhcCCeEEecCCCcceEEEC
Confidence            5789999999999999999999999999999999998732211111111 11233333322221100     00000000


Q ss_pred             cccccc-------------cCCCcce--------eeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcC
Q 003460          592 DLETGA-------------RSGFKEL--------EVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       592 D~~~~~-------------r~~~~~~--------~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                      +.....             .......        .......-+|+||.+....-+.+ .+++||++++.+.|..|+..+.
T Consensus        83 ~~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~~q~~ia~~~~~Vi~GR~~~~~vl~~-a~~~ifl~a~~e~R~~Rr~~~~  161 (225)
T PRK00023         83 GEDVTDEIRTEEVGNAASKVAAIPEVREALVERQRAFAREPGLVMDGRDIGTVVFPD-AELKIFLTASAEERAERRYKEL  161 (225)
T ss_pred             CcchHHhhChHHHHHHHHHHcCCHHHHHHHHHHHHHHhhCCCEEEEecChheEEeCC-CCEEEEEECCHHHHHHHHHHHH
Confidence            000000             0000000        00012245899999855433333 7899999999999988877664

>PRK03839 putative kinase; Provisional

Probab=98.69  E-value=1.2e-07  Score=95.61  Aligned_cols=97  Identities=21%  Similarity=0.296  Sum_probs=63.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccC---CCCCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG---NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI  140 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~---~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~  140 (818)
                      .|.|+|++||||||+|+.|++.+|..++++|++++...-.   .......+..+...+..                    
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------   61 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGIGEEKDDEMEIDFDKLAYFIEE--------------------   61 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcCCcccCChhhhcCHHHHHHHHHH--------------------
Confidence            5899999999999999999999999999999986532100   00001111111111110                    


Q ss_pred             cccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          141 GSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       141 ~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                         .  . ....+|++|.+...    ...|++||++++.+....|...|.
T Consensus        62 ---~--~-~~~~vIidG~~~~l----~~~~~vi~L~~~~~~~~~Rl~~R~  101 (180)
T PRK03839         62 ---E--F-KEKNVVLDGHLSHL----LPVDYVIVLRAHPKIIKERLKERG  101 (180)
T ss_pred             ---h--c-cCCCEEEEeccccc----cCCCEEEEEECCHHHHHHHHHHcC
Confidence               0  0 11237888865421    247999999999999988877664

>PRK00625 shikimate kinase; Provisional

Probab=98.69  E-value=6.4e-08  Score=97.21  Aligned_cols=141  Identities=13%  Similarity=0.097  Sum_probs=79.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK  143 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~  143 (818)
                      .|.|+|.+||||||+++.|++.+|.+++++|.+...........+  ...+.+.     .|+.    .|........ . 
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~--i~eif~~-----~Ge~----~fr~~E~~~l-~-   68 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSS--PKEIYQA-----YGEE----GFCREEFLAL-T-   68 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCC--HHHHHHH-----HCHH----HHHHHHHHHH-H-
Confidence            489999999999999999999999999999997543222110000  0000000     0100    0000000000 0 


Q ss_pred             ccccCCccEEEEEe-cccchhhhh---cCCCEEEEEEcCHHHHHHHHHHhccCCC----cCHHHHHHhhchhhhhccCCc
Q 003460          144 VIKGASSGVVIVDG-TYALDARLR---SLLDIRVAVVGGVHFSLISKVQYDIGDS----CSLDSLIDSIFPLFRKHIEPD  215 (818)
Q Consensus       144 ~~~~~~~~vVIvEG-~~l~~~~l~---~~~D~~I~Vda~~e~~l~Rri~Rd~~~~----~s~e~~~~~~~p~~~~~Iep~  215 (818)
                      .+. . ...||..| .....+...   .....+||++++.+....|...|.....    ...++++++..|.|++     
T Consensus        69 ~l~-~-~~~VIs~GGg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y~~-----  141 (173)
T PRK00625         69 SLP-V-IPSIVALGGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDRMRS-----  141 (173)
T ss_pred             Hhc-c-CCeEEECCCCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHHHH-----
Confidence            011 1 22344444 333333222   2336899999999999888887765432    2233444555666654     


Q ss_pred             cccCcEEEECC
Q 003460          216 LHHAQIRINNR  226 (818)
Q Consensus       216 ~~~ADiII~N~  226 (818)
                        .||++|+.+
T Consensus       142 --~ad~~i~~~  150 (173)
T PRK00625        142 --IADYIFSLD  150 (173)
T ss_pred             --HCCEEEeCC
Confidence              799998766

>PRK05541 adenylylsulfate kinase; Provisional

Probab=98.68  E-value=5e-08  Score=97.98  Aligned_cols=137  Identities=17%  Similarity=0.132  Sum_probs=76.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceecccccCCCC--CcccHHHHHHHHHhhhcCCccccccc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDEGNDL--DSIDFDALVQNLQDLTEGKDTLIPMF  132 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~~~~~~--~~~d~~~l~~~L~~l~~~~~i~~p~~  132 (818)
                      .++.+|.++|++||||||+|+.|++.++     +.+++.|.++..+...+..  ...+.......+..            
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~~~~~~l~~------------   72 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGYDKQSRIEMALKRAKLAK------------   72 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCCCCHHHHHHHHHHHHHHHH------------
Confidence            4567999999999999999999999885     6778888876543222100  00000000001110            


Q ss_pred             hhhhhccccccccccCCccEEEEEecccch---hhhhcC--CCEEEEEEcCHHHHHHHHHHh--ccCCCcCHHHHHHhhc
Q 003460          133 DYQQKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSL--LDIRVAVVGGVHFSLISKVQY--DIGDSCSLDSLIDSIF  205 (818)
Q Consensus       133 d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~--~D~~I~Vda~~e~~l~Rri~R--d~~~~~s~e~~~~~~~  205 (818)
                                 .+ .....+||++|...+.   ...+..  -.+.||++++.++..+|...+  ....+..+.++...+.
T Consensus        73 -----------~l-~~~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~  140 (176)
T PRK05541         73 -----------FL-ADQGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDI  140 (176)
T ss_pred             -----------HH-HhCCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCC
Confidence                       01 1223477888876552   111111  147899999999887775321  0000112222333334


Q ss_pred             hhhhhccCCccccCcEEEECCC
Q 003460          206 PLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       206 p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      |.|..       .||++|+|+.
T Consensus       141 ~~~~~-------~Ad~vI~~~~  155 (176)
T PRK05541        141 PFDEP-------KADLVIDNSC  155 (176)
T ss_pred             cccCC-------CCCEEEeCCC
Confidence            44443       4899999984

>TIGR00017 cmk cytidylate kinase

Probab=98.65  E-value=4.1e-08  Score=102.23  Aligned_cols=127  Identities=20%  Similarity=0.248  Sum_probs=75.9

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhh--cccCCCcccccHHHHHHHHHHHh------cC-----
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK--DFKYDDFSSLDLSLLSKNISDIR------NG-----  583 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~--~~~~d~p~t~D~~ll~~~L~~L~------~g-----  583 (818)
                      +++|+|+||+||||||+++.|+..++..+++.|++|+.-...  ..+.+.   .|-..+.+.+..+.      .|     
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDL---TSEDALAELISHLDIRFIPTNGEVEVF   78 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCC---CCHHHHHHHHHhCCCEEecCCCceeEE
Confidence            468999999999999999999999999999999999753211  111111   12222222222110      00     


Q ss_pred             --------------------CceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHH
Q 003460          584 --------------------RRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHL  643 (818)
Q Consensus       584 --------------------~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl  643 (818)
                                          ....+|.+......+.     ......+-+|+||.+.++..+ +..+++||++++.+.|.
T Consensus        79 l~~~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~q-----r~~a~~~~~Vi~Gr~~~~~v~-~~a~~~ifl~a~~~~Ra  152 (217)
T TIGR00017        79 LNGEDVSEAIRTQEVANAASKVAVFPKVREALLKRQ-----QALAKNDGIIADGRDIGTVVF-PNAEVKIFLDASVEERA  152 (217)
T ss_pred             EcCcchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHH-----HHHhhcCCEEEEEcCcceEEe-CCCCEEEEEECCHHHHH
Confidence                                0011122111111111     000112349999998665433 33789999999999999


Q ss_pred             HHHHhcCcc
Q 003460          644 ISRVQRDKS  652 (818)
Q Consensus       644 ~Rri~Rd~~  652 (818)
                      .|+..|...
T Consensus       153 ~Rr~~~~~~  161 (217)
T TIGR00017       153 KRRYKQLQI  161 (217)
T ss_pred             HHHHHHHhc
Confidence            999888643

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>cd07761 CYTH-like_CthTTM-like Clostridium thermocellum (Cth)TTM and similar proteins, a subgroup of the CYTH-like superfamily

Probab=98.64  E-value=9.9e-08  Score=93.14  Aligned_cols=81  Identities=11%  Similarity=0.130  Sum_probs=68.3

Q ss_pred             hhhccCCeeeEeeeCCEEEEEEcceeecCCCcccCceeEEEEec---cHHHHHHhcCCceeEEEEEEEEEEEe-CCEEEE
Q 003460          275 EEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---MTLGGLLDLGYSVVASYKRASTYVVY-GNLSVS  350 (818)
Q Consensus       275 dea~~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v---~~~~~L~~LGf~~~~~~~K~R~~~~~-~~~~i~  350 (818)
                      ++++     |||..++++.|||||+.    +   +.|.|+|..|   .+.++|.   +.....++|.|..|.+ ++..++
T Consensus        32 ~~~v-----RvR~~~~~~~lT~K~~~----~---~~R~E~E~~I~~~~~~~ll~---~~~~~~I~K~R~~~~~~~~~~~~   96 (146)
T cd07761          32 NPEV-----RIRSKGEKYILTVKSGG----G---LVREEIEIEIDKKEFEHLLE---KTEGNLIEKTRYLIPLEGGLLAE   96 (146)
T ss_pred             CcEE-----EEEEECCEEEEEEEcCC----C---cceEEEEEeCCHHHHHHHHH---hCCCCeEEEEEEEEEeCCCcEEE
Confidence            4677     99999999999999874    5   6999999999   5556664   7788899999999999 999999


Q ss_pred             EeccCCCCC--CeEEEEecCHH
Q 003460          351 FETIDTLDE--TFMVLRGTNRK  370 (818)
Q Consensus       351 lD~v~~lg~--~fvEiE~~~~~  370 (818)
                      ||.++|.+.  .|+|||..+++
T Consensus        97 vD~~~g~~~gL~~~EvE~~se~  118 (146)
T cd07761          97 LDVFEGRLTGLVYAEVEFPSEE  118 (146)
T ss_pred             EEEEcCCCCCeEEEEEEcCCch
Confidence            999999872  28888887543

CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. Members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily have a unique active site located within an eight-stranded beta barrel.

>PRK06762 hypothetical protein; Provisional

Probab=98.63  E-value=1.5e-07  Score=93.55  Aligned_cols=106  Identities=22%  Similarity=0.256  Sum_probs=70.8

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHh--CCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIV--GCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE  594 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~l--g~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~  594 (818)
                      |.+|+|+|++||||||+|+.|++.+  ++.+++.|.+....   ...++.++....+.+.+.....              
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l---~~~~~~~~~~~~~~~~~~~~~~--------------   64 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM---LRVKDGPGNLSIDLIEQLVRYG--------------   64 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh---ccccCCCCCcCHHHHHHHHHHH--------------
Confidence            6789999999999999999999998  46678888776431   1112344444454444332221              


Q ss_pred             ccccCCCcceeeecCCcEEEEEecccch------HhhhhcCC---EEEEEEcChhHHHHHHHhcCc
Q 003460          595 TGARSGFKELEVSEDCGVIIFEGVYALH------PEIRKSLD---LWIAVVGGVHSHLISRVQRDK  651 (818)
Q Consensus       595 ~~~r~~~~~~~~~~~~~vvIvEG~~~~~------~~l~~~~D---~~I~v~~~~d~rl~Rri~Rd~  651 (818)
                                  .....++|+||.+.-.      ..+....+   ..||+++|.++++.|...|..
T Consensus        65 ------------~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~  118 (166)
T PRK06762         65 ------------LGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK  118 (166)
T ss_pred             ------------HhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc
Confidence                        1123577888886421      23333333   789999999999999988863

>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]

Probab=98.63  E-value=1.6e-07  Score=92.74  Aligned_cols=168  Identities=19%  Similarity=0.334  Sum_probs=121.7

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccch--hh-------h----hcccCCCcccccHHHHHHHHH
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKS--EQ-------V----KDFKYDDFSSLDLSLLSKNIS  578 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~--~~-------~----~~~~~d~p~t~D~~ll~~~L~  578 (818)
                      -.||+|+|.||+|-||.+......+.     +..+..|.|++-  .+       .    ....+-.|.+-|+..|.+.+.
T Consensus         5 hPiIavTGSSGAGTTTts~aFrKiF~~~~I~aa~iEGDsFHR~tRpeMd~~Irkar~~GrhisyFgpeANdf~~LE~~f~   84 (289)
T COG3954           5 HPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTFI   84 (289)
T ss_pred             CceEEEecCCCCCcccHHHHHHHHHHhcCccHhhhccccccccCchhHHHHHHHHHHcCCcceecCccccchHHHHHHHH
Confidence            34799999999999999998887764     557788999764  11       0    123345789999999999988


Q ss_pred             HHhcCCceecccc----c------ccccccCCCccee-eecCCcEEEEEecccch----HhhhhcCCEEEEEEcChhHHH
Q 003460          579 DIRNGRRTKVPIF----D------LETGARSGFKELE-VSEDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHL  643 (818)
Q Consensus       579 ~L~~g~~v~~P~y----D------~~~~~r~~~~~~~-~~~~~~vvIvEG~~~~~----~~l~~~~D~~I~v~~~~d~rl  643 (818)
                      ..-+...-....|    |      ...|.-.   .|+ ..++.|++..||++.+.    -.+.+.+|+.|-+..-.....
T Consensus        85 eYg~~G~Gr~R~YlHt~dEAvp~nq~PGTFT---pW~~lpe~sDvLFYEGLHGgvVt~~~nvAqHvDlliGvVPivNLEW  161 (289)
T COG3954          85 EYGQSGKGRSRKYLHTYDEAVPWNQVPGTFT---PWQPLPEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEW  161 (289)
T ss_pred             HhcccCCcchhhhhhchhhcCccCCCCCCCC---CcccCCCccceeeeeccccceecCcccHhhhhceeeeeeeEeeHHH
Confidence            7654222222222    2      2223333   343 24568999999999874    457889999998888788888


Q ss_pred             HHHHhcCccccCcccch-hhHHHhhcchhhhhccccCCcccEEEe
Q 003460          644 ISRVQRDKSRMGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIR  687 (818)
Q Consensus       644 ~Rri~Rd~~~rg~~~~~-~~~~~~v~p~~~~~I~p~~~~ADivI~  687 (818)
                      ...+.||-.+||++.+. .+-.-...+.|..||-|+-.+.|+-+.
T Consensus       162 IQK~~RDt~~RGhSrEAVmDsivRsMdDYinyItPQFSrThINFQ  206 (289)
T COG3954         162 IQKLIRDTSERGHSREAVMDSVVRSMDDYINYITPQFSRTHINFQ  206 (289)
T ss_pred             HHHHHhcccccCccHHHHHHHHHHhhhhHHhhcCcccccccccee
Confidence            89999999999999875 233334567899999999888887543

>PRK04040 adenylate kinase; Provisional

Probab=98.61  E-value=1.9e-07  Score=95.18  Aligned_cols=152  Identities=15%  Similarity=0.144  Sum_probs=82.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh--CCeEEeccceeccccc-CCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI--GCTLISMENYRVGVDE-GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN  138 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L--g~~vI~~D~~~~~~~~-~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~  138 (818)
                      +.+|+|+|++||||||+++.|++.+  +..+++.++++..... .+...  +.+.+.+    +.....   ..+......
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~--~~d~~r~----l~~~~~---~~~~~~a~~   72 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVE--HRDEMRK----LPPEEQ---KELQREAAE   72 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCC--CHHHHhh----CChhhh---HHHHHHHHH
Confidence            5789999999999999999999999  8999999998653221 11111  1121111    100000   000000001


Q ss_pred             cccccccccCCccEEEEEecccch-----------hhhhc-CCCEEEEEEcCHHHHHHHHHH---hccCCCcCHHHHHHh
Q 003460          139 RIGSKVIKGASSGVVIVDGTYALD-----------ARLRS-LLDIRVAVVGGVHFSLISKVQ---YDIGDSCSLDSLIDS  203 (818)
Q Consensus       139 ~~~~~~~~~~~~~vVIvEG~~l~~-----------~~l~~-~~D~~I~Vda~~e~~l~Rri~---Rd~~~~~s~e~~~~~  203 (818)
                      .    .........+|+||.+.+.           ..+.+ ..|..|++.++++..++||..   |+... .+.+.+..+
T Consensus        73 ~----i~~~~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~-es~e~I~~~  147 (188)
T PRK04040         73 R----IAEMAGEGPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDETRRRDV-ETEEDIEEH  147 (188)
T ss_pred             H----HHHhhcCCCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhcccccCCCC-CCHHHHHHH
Confidence            1    1111234458889876432           11122 358999999999988888774   22111 233332222


Q ss_pred             h--chhhhhccCCccccCcEEEECCC
Q 003460          204 I--FPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       204 ~--~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      +  ...+..++.......+.+|.|+.
T Consensus       148 ~~~a~~~a~~~a~~~g~~~~iI~N~d  173 (188)
T PRK04040        148 QEMNRAAAMAYAVLTGATVKIVENRE  173 (188)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEECCC
Confidence            1  12222223333455788888874

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=98.59  E-value=3.6e-07  Score=91.72  Aligned_cols=141  Identities=16%  Similarity=0.222  Sum_probs=77.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG  141 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~  141 (818)
                      +..|.|.|++||||||+++.|++.+|..++++|.........+      ...+.+.     .|..    .|...... .-
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~~------i~~~~~~-----~g~~----~fr~~e~~-~l   67 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGAD------IGWVFDV-----EGEE----GFRDREEK-VI   67 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCcC------HhHHHHH-----hCHH----HHHHHHHH-HH
Confidence            4569999999999999999999999999999998543222111      0000000     0000    00000000 00


Q ss_pred             ccccccCCccEEEEEecccc-hh---hhhcCCCEEEEEEcCHHHHHHHHHHhccCCC---cC----HHHHHHhhchhhhh
Q 003460          142 SKVIKGASSGVVIVDGTYAL-DA---RLRSLLDIRVAVVGGVHFSLISKVQYDIGDS---CS----LDSLIDSIFPLFRK  210 (818)
Q Consensus       142 ~~~~~~~~~~vVIvEG~~l~-~~---~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~---~s----~e~~~~~~~p~~~~  210 (818)
                      ... .. ...+++.-|.... .+   .+....+.+|||+++.+.++.|...+....-   ..    .+.+.+...|.|++
T Consensus        68 ~~l-~~-~~~~vi~~ggg~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~~Y~~  145 (172)
T PRK05057         68 NEL-TE-KQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPLYEE  145 (172)
T ss_pred             HHH-Hh-CCCEEEEcCCchhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            000 11 1224444443332 22   2334468999999999999888754432211   12    22333445666654


Q ss_pred             ccCCccccCcEEEECCC
Q 003460          211 HIEPDLHHAQIRINNRF  227 (818)
Q Consensus       211 ~Iep~~~~ADiII~N~~  227 (818)
                             .||++|+++.
T Consensus       146 -------~Ad~~idt~~  155 (172)
T PRK05057        146 -------IADVTIRTDD  155 (172)
T ss_pred             -------hCCEEEECCC
Confidence                   6999998773

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=98.58  E-value=2.6e-07  Score=93.12  Aligned_cols=117  Identities=16%  Similarity=0.104  Sum_probs=69.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK  143 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~  143 (818)
                      +|.|.|++||||||+|+.|++.+|+.+|+++++.+.......+  .. ..+.+.   +..|..+.-..........    
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~--~~-~~~~~~---~~~g~~~~~~~~~~ll~~~----   70 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSE--NG-ELIESM---IKNGKIVPSEVTVKLLKNA----   70 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCCh--HH-HHHHHH---HHCCCcCCHHHHHHHHHHH----
Confidence            5899999999999999999999999999998875532221111  00 111111   1122221110111111111    


Q ss_pred             ccccCCccEEEEEecccch---h---hhh---cCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460          144 VIKGASSGVVIVDGTYALD---A---RLR---SLLDIRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       144 ~~~~~~~~vVIvEG~~l~~---~---~l~---~~~D~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                       +.......+|+||..--.   .   .+.   ...|..||+++|.+..++|...|..
T Consensus        71 -~~~~~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~  126 (183)
T TIGR01359        71 -IQADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ  126 (183)
T ss_pred             -HhccCCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence             111114568999974322   1   111   2468999999999999999998875

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.56  E-value=1.6e-07  Score=91.68  Aligned_cols=137  Identities=19%  Similarity=0.224  Sum_probs=75.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccccc
Q 003460           65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKV  144 (818)
Q Consensus        65 IgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~~  144 (818)
                      |.|+|++||||||+|+.|++.+|+..++.|.+........      ...+.+..     +.+    .+...... ... .
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~~------~~~~~~~~-----~~~----~~~~~e~~-~~~-~   64 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMS------IPEIFAEE-----GEE----GFRELERE-VLL-L   64 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCCC------HHHHHHHH-----CHH----HHHHHHHH-HHH-H
Confidence            7899999999999999999999999999999865433221      11111000     000    00000000 000 0


Q ss_pred             cccCCccEEEEEecc-cchh---hhhcCCCEEEEEEcCHHHHHHHHHHhccCCC---cC---HHHHHHhhchhhhhccCC
Q 003460          145 IKGASSGVVIVDGTY-ALDA---RLRSLLDIRVAVVGGVHFSLISKVQYDIGDS---CS---LDSLIDSIFPLFRKHIEP  214 (818)
Q Consensus       145 ~~~~~~~vVIvEG~~-l~~~---~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~---~s---~e~~~~~~~p~~~~~Iep  214 (818)
                      .. .....||..|.. ....   ........+|||++|.+.+.+|...|+....   .+   ......+..+.|.     
T Consensus        65 ~~-~~~~~vi~~g~~~i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~r~~~Y~-----  138 (154)
T cd00464          65 LL-TKENAVIATGGGAVLREENRRLLLENGIVVWLDASPEELLERLARDKTRPLLQDEDPERLRELLEEREPLYR-----  138 (154)
T ss_pred             Hh-ccCCcEEECCCCccCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHHHHHH-----
Confidence            11 112344444432 2222   1123356899999999998888877652211   11   2233333344444     


Q ss_pred             ccccCcEEEECC
Q 003460          215 DLHHAQIRINNR  226 (818)
Q Consensus       215 ~~~~ADiII~N~  226 (818)
                        +.||++++.+
T Consensus       139 --~~ad~~i~~~  148 (154)
T cd00464         139 --EVADLTIDTD  148 (154)
T ss_pred             --HhCcEEEECC
Confidence              4699999877

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.54  E-value=1.2e-07  Score=94.30  Aligned_cols=38  Identities=16%  Similarity=0.307  Sum_probs=34.7

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK  553 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~  553 (818)
                      .+..|.++|++||||||+|+.|++.+|..+++.|++..
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~   40 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIE   40 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHH
Confidence            45689999999999999999999999999999998865

>PRK14737 gmk guanylate kinase; Provisional

Probab=98.53  E-value=5.1e-07  Score=91.83  Aligned_cols=157  Identities=10%  Similarity=0.036  Sum_probs=79.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc----cCCCCCcccHHHHHHHHHhhhcCCccccccchh-
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD----EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDY-  134 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~----~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~-  134 (818)
                      .++++|.|+||||||||||++.|.+...-...+...--+...    ++.+.--...+.+.+.   +..+.-+.+-.|.. 
T Consensus         2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~---i~~~~f~e~~~~~g~   78 (186)
T PRK14737          2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKG---IADGEFLEWAEVHDN   78 (186)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHH---HHcCCeEEEEEECCe
Confidence            357899999999999999999998764211111111101000    1111111122222222   22333333222221 


Q ss_pred             --hhhccccccccccCCccEEEEEecccchhhhhcCC-C--EEEEEEcC-HHHHHHHHHHhccCCCcCHHHHHHhhchhh
Q 003460          135 --QQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLL-D--IRVAVVGG-VHFSLISKVQYDIGDSCSLDSLIDSIFPLF  208 (818)
Q Consensus       135 --~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~-D--~~I~Vda~-~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~  208 (818)
                        .+.......  ......++|++.-.-....++..+ +  +.|||.+| .+....|...|+......++..++.+.+..
T Consensus        79 ~YGt~~~~i~~--~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~  156 (186)
T PRK14737         79 YYGTPKAFIED--AFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIEL  156 (186)
T ss_pred             eecCcHHHHHH--HHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence              111111111  123455777774433333344333 3  68999986 566677777776433344555555544443


Q ss_pred             hhccCCccccCcEEEECC
Q 003460          209 RKHIEPDLHHAQIRINNR  226 (818)
Q Consensus       209 ~~~Iep~~~~ADiII~N~  226 (818)
                      +.     .+.+|.||.|+
T Consensus       157 ~~-----~~~~D~vI~N~  169 (186)
T PRK14737        157 DE-----ANEFDYKIIND  169 (186)
T ss_pred             hh-----hccCCEEEECc
Confidence            33     57899999998

>PRK08356 hypothetical protein; Provisional

Probab=98.52  E-value=4.2e-07  Score=93.06  Aligned_cols=123  Identities=19%  Similarity=0.155  Sum_probs=67.7

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh---hhhcccCCCccc----ccHHHHHHHHHHHh--cCCce
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE---QVKDFKYDDFSS----LDLSLLSKNISDIR--NGRRT  586 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~---~~~~~~~d~p~t----~D~~ll~~~L~~L~--~g~~v  586 (818)
                      +..+|+|+||+||||||+|+.|++ +|+.++|+.+.++..   +..++.|.....    .+...+.+.=.-+.  -|..+
T Consensus         4 ~~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~   82 (195)
T PRK08356          4 EKMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI   82 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence            346799999999999999999975 899999999876541   111121111000    00011111000000  01110


Q ss_pred             ecccccccccccCCCcceeeecCCcEEEEEecccch--HhhhhcCCEEEEEEcChhHHHHHHHhcCc
Q 003460          587 KVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH--PEIRKSLDLWIAVVGGVHSHLISRVQRDK  651 (818)
Q Consensus       587 ~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~--~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~  651 (818)
                      .+    ...-++     .   .....++++|+-...  ..+.......||++++.+.+..|...|+.
T Consensus        83 ~~----~~~~~~-----~---~~~~~ividG~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~  137 (195)
T PRK08356         83 LI----RLAVDK-----K---RNCKNIAIDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGA  137 (195)
T ss_pred             HH----HHHHHH-----h---ccCCeEEEcCcCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCC
Confidence            00    000000     0   112358999995543  23444446899999999998888877763

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=98.52  E-value=8.6e-07  Score=86.48  Aligned_cols=36  Identities=28%  Similarity=0.466  Sum_probs=33.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG   99 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~   99 (818)
                      +|.|+|++||||||+|+.|++.+|+.+++.|.++..
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~   36 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPP   36 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccH
Confidence            478999999999999999999999999999998763

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK14528 adenylate kinase; Provisional

Probab=98.50  E-value=5.3e-07  Score=91.72  Aligned_cols=140  Identities=15%  Similarity=0.082  Sum_probs=78.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRI  140 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~~~  140 (818)
                      |..|.|.|++||||||+|+.|++.+|++++++|+..+.....+.+       +-..+.. +..|..+.-.........+.
T Consensus         1 ~~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~-------~g~~~~~~~~~g~lvp~~~~~~~~~~~l   73 (186)
T PRK14528          1 MKNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTA-------MGIEAKRYMDAGDLVPDSVVIGIIKDRI   73 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCH-------HHHHHHHHHhCCCccCHHHHHHHHHHHH
Confidence            356899999999999999999999999999999986542222111       1111122 12222111111111111111


Q ss_pred             cccccccCCccEEEEEecccch-------hhh---hcCCCEEEEEEcCHHHHHHHHHHhccCCC--cCHHHHHHhhchhh
Q 003460          141 GSKVIKGASSGVVIVDGTYALD-------ARL---RSLLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDSIFPLF  208 (818)
Q Consensus       141 ~~~~~~~~~~~vVIvEG~~l~~-------~~l---~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~--~s~e~~~~~~~p~~  208 (818)
                      .    .......+|+||.---.       ..+   ....|.+|++++|.+..+.|...|.....  .+-++.+.+.+..|
T Consensus        74 ~----~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y  149 (186)
T PRK14528         74 R----EADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNY  149 (186)
T ss_pred             h----CcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHH
Confidence            1    11123468999963211       111   13589999999999999999988854332  22233344333444


Q ss_pred             hhcc
Q 003460          209 RKHI  212 (818)
Q Consensus       209 ~~~I  212 (818)
                      ....
T Consensus       150 ~~~~  153 (186)
T PRK14528        150 NKKT  153 (186)
T ss_pred             HHHh
Confidence            4433

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.50  E-value=1.1e-06  Score=88.74  Aligned_cols=119  Identities=16%  Similarity=0.117  Sum_probs=70.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhh-cCCccccccchhhhhccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLT-EGKDTLIPMFDYQQKNRI  140 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~-~~~~i~~p~~d~~~~~~~  140 (818)
                      ..+|+|.|++||||||+|+.|++.+|..+++++++.+.......+    .   .+.+..+. .+.  ..|.  .......
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~----~---~~~~~~~~~~~~--~~~~--~~~~~~l   71 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSE----R---GKQLQAIMESGD--LVPL--DTVLDLL   71 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCH----H---HHHHHHHHHCCC--CCCH--HHHHHHH
Confidence            468999999999999999999999999999999875532111111    1   11122111 121  1111  0000001


Q ss_pred             ccccc-ccCCccEEEEEecccch---hhh---hcCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460          141 GSKVI-KGASSGVVIVDGTYALD---ARL---RSLLDIRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       141 ~~~~~-~~~~~~vVIvEG~~l~~---~~l---~~~~D~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                      ..... .......+|+||..--.   ..+   ....|+.||++++.+....|...|..
T Consensus        72 ~~~~~~~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~  129 (188)
T TIGR01360        72 KDAMVAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAE  129 (188)
T ss_pred             HHHHHcccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccc
Confidence            00000 12234578999974221   111   13478999999999999999888864

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=98.50  E-value=3e-07  Score=112.23  Aligned_cols=175  Identities=15%  Similarity=0.140  Sum_probs=103.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc-----cCCCC------CcccHHHHH-----HHHHhhhc---
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-----EGNDL------DSIDFDALV-----QNLQDLTE---  123 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~-----~~~~~------~~~d~~~l~-----~~L~~l~~---  123 (818)
                      ++|+|+||+||||||+|+.||+.||+.+|+++.+|+.+.     ..-.+      +..|.+.+.     ..+..+..   
T Consensus        35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (863)
T PRK12269         35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFTLAALRRVSELAVQACSPSPDPDAAVGCAAVPHATNLDTSYA  114 (863)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHcCCcccccccCCcCCHHHHhhhhhHHHHhhCceEec
Confidence            689999999999999999999999999999999999532     11100      122333332     22221110   


Q ss_pred             -----------------------------------CCcccc----ccchhhhhc-----ccccc----ccccCCccEEEE
Q 003460          124 -----------------------------------GKDTLI----PMFDYQQKN-----RIGSK----VIKGASSGVVIV  155 (818)
Q Consensus       124 -----------------------------------~~~i~~----p~~d~~~~~-----~~~~~----~~~~~~~~vVIv  155 (818)
                                                         +.++..    |..+.....     .+...    ........-+|+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dv~~~ir~~~v~~~vS~ia~~p~VR~~l~~~qr~~~~~~~~V~  194 (863)
T PRK12269        115 PLTAQKKVALFDEAYWVSFARTVALSYRAGVMYVGEENVESLLRSDEVESAVSYFAAMPAIRAIMTGKIRSAVCGARVVC  194 (863)
T ss_pred             ccccccccccccccccccccccccccccCceEEECCeEchhhhcchHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCEEE
Confidence                                               000000    000000000     00000    000011224888


Q ss_pred             EecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHH----hhchhhhhccCCccccCcEEEECCCCCCh
Q 003460          156 DGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID----SIFPLFRKHIEPDLHHAQIRINNRFVSSF  231 (818)
Q Consensus       156 EG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~----~~~p~~~~~Iep~~~~ADiII~N~~~~~~  231 (818)
                      ||-=+.. .+.+.+|++||++|+.+.|.+||...... ..+.+++.+    +-.....+-+.|.+...|.++.++..+++
T Consensus       195 eGRDigT-vVfPdA~~KifL~As~e~RA~RR~~e~~~-~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDts~l~i  272 (863)
T PRK12269        195 EGRDLTT-VVFVDADLKCYLDASIEARVARRWAQGTS-RLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDTSCLTI  272 (863)
T ss_pred             ECCCCcc-EECCCCCEEEEEECCHHHHHHHHHHhhhc-cCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEECCCCCH
Confidence            9875543 44577899999999999999999765432 245555444    33455556678999998987766667777


Q ss_pred             hhhhhccc
Q 003460          232 REAIYKLK  239 (818)
Q Consensus       232 ~~~~~~l~  239 (818)
                      ++-+-.+.
T Consensus       273 eevv~~i~  280 (863)
T PRK12269        273 EEVCERIA  280 (863)
T ss_pred             HHHHHHHH
Confidence            66554443

>PRK04040 adenylate kinase; Provisional

Probab=98.50  E-value=1.8e-07  Score=95.24  Aligned_cols=38  Identities=21%  Similarity=0.334  Sum_probs=35.2

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHh--CCcccccccccch
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIV--GCEVVSLESYFKS  554 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~l--g~~vis~Ddfy~~  554 (818)
                      |.+|+|+|++||||||+++.|++.+  +..+++.|+++..
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~   41 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLE   41 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHH
Confidence            6789999999999999999999999  7899999999865

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=98.50  E-value=4.2e-07  Score=92.31  Aligned_cols=117  Identities=21%  Similarity=0.087  Sum_probs=69.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccccc
Q 003460           65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKV  144 (818)
Q Consensus        65 IgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~~  144 (818)
                      |.|.|++||||||+|+.|++.+|+.++++|++.+.......+   ....+...+.   .+..+.-...........    
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~---~~~~~~~~~~---~g~~~~~~~~~~l~~~~l----   71 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTE---LGKKAKEYID---SGKLVPDEIVIKLLKERL----   71 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCCh---HHHHHHHHHH---cCCccCHHHHHHHHHHHH----
Confidence            789999999999999999999999999999986533221110   1111111111   122111111111111111    


Q ss_pred             cccCCccEEEEEecccch------hhhhc---CCCEEEEEEcCHHHHHHHHHHhcc
Q 003460          145 IKGASSGVVIVDGTYALD------ARLRS---LLDIRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       145 ~~~~~~~vVIvEG~~l~~------~~l~~---~~D~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                      .......-+|++|...-.      .....   ..++.|+++++.++.++|...|..
T Consensus        72 ~~~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~  127 (194)
T cd01428          72 KKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRI  127 (194)
T ss_pred             hcccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence            011123457889853321      12222   678999999999999999998874

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK14527 adenylate kinase; Provisional

Probab=98.49  E-value=6e-07  Score=91.55  Aligned_cols=142  Identities=18%  Similarity=0.105  Sum_probs=80.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhh-hcCCccccccchhhhhc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKN  138 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l-~~~~~i~~p~~d~~~~~  138 (818)
                      +.+.+|.|.|++||||||+|+.|++.+|+.++++|+..+.....+.+       +...+..+ ..+..+...........
T Consensus         4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~-------~~~~~~~~~~~g~~~p~~~~~~l~~~   76 (191)
T PRK14527          4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTE-------LGQRAKPIMEAGDLVPDELILALIRD   76 (191)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcH-------HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            35678999999999999999999999999999999986543221111       11111111 11221110001111111


Q ss_pred             cccccccccCCccEEEEEecccchh---hh-------hcCCCEEEEEEcCHHHHHHHHHHhccCCC--cCHHHHHHhhch
Q 003460          139 RIGSKVIKGASSGVVIVDGTYALDA---RL-------RSLLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDSIFP  206 (818)
Q Consensus       139 ~~~~~~~~~~~~~vVIvEG~~l~~~---~l-------~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~--~s~e~~~~~~~p  206 (818)
                      ..     .......+|+||..--..   .+       ...++..+|++++.+.++.|...|.....  .+-++.+.+.+.
T Consensus        77 ~l-----~~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~  151 (191)
T PRK14527         77 EL-----AGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQ  151 (191)
T ss_pred             HH-----hcCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHH
Confidence            11     111123489999643211   11       13467889999999999999998864322  223344444445


Q ss_pred             hhhhccC
Q 003460          207 LFRKHIE  213 (818)
Q Consensus       207 ~~~~~Ie  213 (818)
                      .|.+...
T Consensus       152 ~y~~~~~  158 (191)
T PRK14527        152 VYREQTQ  158 (191)
T ss_pred             HHHHHhH
Confidence            5554443

>PRK03839 putative kinase; Provisional

Probab=98.48  E-value=5.3e-07  Score=90.90  Aligned_cols=100  Identities=21%  Similarity=0.282  Sum_probs=66.1

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR  598 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r  598 (818)
                      .|.|+|++||||||+++.|++.++..++++|+++....... .++..+...+..+...+....                 
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-----------------   63 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGIGE-EKDDEMEIDFDKLAYFIEEEF-----------------   63 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcCCcc-cCChhhhcCHHHHHHHHHHhc-----------------
Confidence            47889999999999999999999999999999986432111 112222223333333322200                 


Q ss_pred             CCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcC
Q 003460          599 SGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       599 ~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                               . ...+|++|.+...    ...|..||++++.+....|...|.
T Consensus        64 ---------~-~~~vIidG~~~~l----~~~~~vi~L~~~~~~~~~Rl~~R~  101 (180)
T PRK03839         64 ---------K-EKNVVLDGHLSHL----LPVDYVIVLRAHPKIIKERLKERG  101 (180)
T ss_pred             ---------c-CCCEEEEeccccc----cCCCEEEEEECCHHHHHHHHHHcC
Confidence                     0 1226778865322    136889999999999988877664

>PRK13946 shikimate kinase; Provisional

Probab=98.47  E-value=3.7e-07  Score=92.64  Aligned_cols=113  Identities=17%  Similarity=0.243  Sum_probs=64.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI  140 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~  140 (818)
                      .+..|+++|++||||||+++.|++.||++++++|.........      ....+....     +..    .+.... ...
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g~------~~~e~~~~~-----ge~----~~~~~e-~~~   72 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAARM------TIAEIFAAY-----GEP----EFRDLE-RRV   72 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhCC------CHHHHHHHH-----CHH----HHHHHH-HHH
Confidence            3457999999999999999999999999999999854322211      001111100     000    000000 000


Q ss_pred             cccccccCCccEEEEEecccc-hhh---hhcCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460          141 GSKVIKGASSGVVIVDGTYAL-DAR---LRSLLDIRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       141 ~~~~~~~~~~~vVIvEG~~l~-~~~---l~~~~D~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                      -....  .....||..|...+ .+.   +....++.||+++|.+.+++|...|..
T Consensus        73 l~~l~--~~~~~Vi~~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~~  125 (184)
T PRK13946         73 IARLL--KGGPLVLATGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRRDT  125 (184)
T ss_pred             HHHHH--hcCCeEEECCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCCC
Confidence            00111  11235666554332 222   112357899999999999988876653

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.47  E-value=1.6e-07  Score=90.43  Aligned_cols=114  Identities=22%  Similarity=0.238  Sum_probs=66.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK  143 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~  143 (818)
                      +|.++|++||||||+|+.|++.++..+|+.|.++..+...+.+...+.......+....              .... ..
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~-~~   65 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQIL--------------NAAI-RK   65 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHH--------------HHHH-HH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHHHHHH--------------HHHH-HH
Confidence            58899999999999999999999999999999877655433322211111111111000              0000 00


Q ss_pred             ccccCCccEEEEEecccchh---hh---hcCC---CEEEEEEcCHHHHHHHHHHhccCCC
Q 003460          144 VIKGASSGVVIVDGTYALDA---RL---RSLL---DIRVAVVGGVHFSLISKVQYDIGDS  194 (818)
Q Consensus       144 ~~~~~~~~vVIvEG~~l~~~---~l---~~~~---D~~I~Vda~~e~~l~Rri~Rd~~~~  194 (818)
                      ... . ..-+|++..+....   .+   ....   -..|+++++.++..+|...|.....
T Consensus        66 ~l~-~-g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~  123 (143)
T PF13671_consen   66 ALR-N-GNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGD  123 (143)
T ss_dssp             HHH-T-T-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCT
T ss_pred             HHH-c-CCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCccc
Confidence            011 1 12366676655441   11   1111   2668999999999999888876543

...

>PLN02200 adenylate kinase family protein

Probab=98.47  E-value=5.6e-07  Score=94.88  Aligned_cols=121  Identities=15%  Similarity=0.170  Sum_probs=74.3

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE  594 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~  594 (818)
                      +.|.+|.|.|++||||||+|+.|++.+|+.+||++|..+.+-..    +   +.+..   .....+..|+.+.-......
T Consensus        41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~----~---s~~~~---~i~~~~~~G~~vp~e~~~~~  110 (234)
T PLN02200         41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIAS----N---SEHGA---MILNTIKEGKIVPSEVTVKL  110 (234)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhc----c---ChhHH---HHHHHHHcCCCCcHHHHHHH
Confidence            46889999999999999999999999999999999998753211    1   11111   12222334443221110000


Q ss_pred             ccccCCCcceeeecCCcEEEEEecccchH---hhh----hcCCEEEEEEcChhHHHHHHHhcCc
Q 003460          595 TGARSGFKELEVSEDCGVIIFEGVYALHP---EIR----KSLDLWIAVVGGVHSHLISRVQRDK  651 (818)
Q Consensus       595 ~~~r~~~~~~~~~~~~~vvIvEG~~~~~~---~l~----~~~D~~I~v~~~~d~rl~Rri~Rd~  651 (818)
                      ...+.     .. ....-+|+||......   .+.    ...|..|+++++.++.+.|...|..
T Consensus       111 l~~~l-----~~-~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~  168 (234)
T PLN02200        111 IQKEM-----ES-SDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQ  168 (234)
T ss_pred             HHHHH-----hc-CCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcC
Confidence            00111     00 0123489999653321   121    2478999999999999999888853

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=98.46  E-value=2e-07  Score=92.43  Aligned_cols=138  Identities=18%  Similarity=0.197  Sum_probs=81.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccH---HHHHHHHHhhhcCCccccccchhhhhcc
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDF---DALVQNLQDLTEGKDTLIPMFDYQQKNR  139 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~---~~l~~~L~~l~~~~~i~~p~~d~~~~~~  139 (818)
                      ..|.+.|++||||||+++.||+.||...+|+|..........-++-|+.   +.+.+.                  . ..
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~------------------E-~~   63 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRL------------------E-TE   63 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHH------------------H-HH
Confidence            4588999999999999999999999999999997553222211111110   111100                  0 00


Q ss_pred             ccccccccCCccEEEEEecccch-hhhhcCC---CEEEEEEcCHHHHHHHHHHhccCCC----cC----HHHHHHhhchh
Q 003460          140 IGSKVIKGASSGVVIVDGTYALD-ARLRSLL---DIRVAVVGGVHFSLISKVQYDIGDS----CS----LDSLIDSIFPL  207 (818)
Q Consensus       140 ~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~---D~~I~Vda~~e~~l~Rri~Rd~~~~----~s----~e~~~~~~~p~  207 (818)
                      +...... .. ..||.-|-.++. ++.+.++   -.+||++++.+...+|.- ++....    .+    ++++++...|.
T Consensus        64 vl~~l~~-~~-~~ViaTGGG~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~-~~~~RPll~~~~~~~~l~~L~~~R~~~  140 (172)
T COG0703          64 VLKELLE-ED-NAVIATGGGAVLSEENRNLLKKRGIVVYLDAPFETLYERLQ-RDRKRPLLQTEDPREELEELLEERQPL  140 (172)
T ss_pred             HHHHHhh-cC-CeEEECCCccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhc-cccCCCcccCCChHHHHHHHHHHHHHH
Confidence            0001111 11 255555555543 3333332   389999999999777665 332111    22    34555666788


Q ss_pred             hhhccCCccccCcEEEECCCCC
Q 003460          208 FRKHIEPDLHHAQIRINNRFVS  229 (818)
Q Consensus       208 ~~~~Iep~~~~ADiII~N~~~~  229 (818)
                      |++       .||++++.+..+
T Consensus       141 Y~e-------~a~~~~~~~~~~  155 (172)
T COG0703         141 YRE-------VADFIIDTDDRS  155 (172)
T ss_pred             HHH-------hCcEEecCCCCc
Confidence            776       699999887543

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.46  E-value=3.4e-07  Score=93.13  Aligned_cols=134  Identities=17%  Similarity=0.214  Sum_probs=78.1

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhc--CC--ceeccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRN--GR--RTKVPIFD  592 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~--g~--~v~~P~yD  592 (818)
                      .++|+|.||+||||||+|+.|+..||..+++..-+|+.-...... ...+-.|.+.+.+.+..+.-  ..  .+.+---|
T Consensus         4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~-~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~ged   82 (222)
T COG0283           4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALK-HGVDLDDEDALVALAKELDISFVNDDRVFLNGED   82 (222)
T ss_pred             ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHH-cCCCCccHHHHHHHHHhCCceecccceEEECCch
Confidence            389999999999999999999999999999999999873322111 11122344555544443210  00  01110001


Q ss_pred             cc-------ccccC------CC------c-ceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCcc
Q 003460          593 LE-------TGARS------GF------K-ELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKS  652 (818)
Q Consensus       593 ~~-------~~~r~------~~------~-~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~  652 (818)
                      -+       .+...      +.      . ........+=+|+||-=.+. .+.+-.+++||++++.+.|-+||.+....
T Consensus        83 vs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGT-vV~PdA~lKiFLtAS~e~RA~RR~~q~~~  161 (222)
T COG0283          83 VSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGT-VVFPDAELKIFLTASPEERAERRYKQLQA  161 (222)
T ss_pred             hhhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcc-eECCCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            10       00000      00      0 00001112448889876654 23345689999999999999999876533

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=98.45  E-value=1e-06  Score=86.71  Aligned_cols=98  Identities=23%  Similarity=0.296  Sum_probs=72.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec------ccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhh
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV------GVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ  136 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~------~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~  136 (818)
                      ++|+|+|.+|+||||+|+.|+ .+|..++++-++.+      +.++....-..|.+.+...+..+..             
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~~-------------   66 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELLR-------------   66 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCeeccCCccceEEeeHHHHHHHHHHHhc-------------
Confidence            369999999999999999999 79999999988744      2333323345677777666554321             


Q ss_pred             hccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          137 KNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       137 ~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                                   ....|+|+.+.   .+.+.+|++|.+.++++.-..|...|.
T Consensus        67 -------------~~~~Ivd~H~~---hl~~~~dlVvVLR~~p~~L~~RLk~RG  104 (180)
T COG1936          67 -------------EGSGIVDSHLS---HLLPDCDLVVVLRADPEVLYERLKGRG  104 (180)
T ss_pred             -------------cCCeEeechhh---hcCCCCCEEEEEcCCHHHHHHHHHHcC
Confidence                         12367888765   344578999999999999888877776

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.43  E-value=1.4e-06  Score=88.44  Aligned_cols=122  Identities=16%  Similarity=0.081  Sum_probs=64.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCC--CCcccHHHHHHHHHhhhcCCcc---ccccchhhhh
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGND--LDSIDFDALVQNLQDLTEGKDT---LIPMFDYQQK  137 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~--~~~~d~~~l~~~L~~l~~~~~i---~~p~~d~~~~  137 (818)
                      .+|+|.||+|||||||++.|+..++..++..|...........  .-.+..+.+.+.+.   .+.-.   ......+.+.
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~yg~~   79 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAG---QNLFALSWHANGLYYGVG   79 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHH---CCchhhHHHHhCCccCCc
Confidence            4789999999999999999999887777776665332111110  01112222222211   11000   0000001111


Q ss_pred             ccccccccccCCccEEEEEecccchhhhhcCC---CEEEEEEcCHHHHHHHHHHhc
Q 003460          138 NRIGSKVIKGASSGVVIVDGTYALDARLRSLL---DIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       138 ~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~---D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                      ..+. ..+  .....||++|.......++..+   -..||+++|.+...+|...|+
T Consensus        80 ~~~~-~~l--~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~  132 (186)
T PRK10078         80 IEID-LWL--HAGFDVLVNGSRAHLPQARARYQSALLPVCLQVSPEILRQRLENRG  132 (186)
T ss_pred             HHHH-HHH--hCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhC
Confidence            1111 111  1223567788866544333322   357899999999988888775

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=98.43  E-value=7.2e-07  Score=89.93  Aligned_cols=117  Identities=14%  Similarity=0.143  Sum_probs=69.1

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR  598 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r  598 (818)
                      +|.|.|++||||||+|+.|++.+|+.++|++|..+..-..    +.+   .-..+.+.   +.+|..+.--.........
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~----~~~---~~~~~~~~---~~~g~~~~~~~~~~ll~~~   70 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKS----GSE---NGELIESM---IKNGKIVPSEVTVKLLKNA   70 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhc----CCh---HHHHHHHH---HHCCCcCCHHHHHHHHHHH
Confidence            4789999999999999999999999999999998753211    000   00011111   1233322110100000000


Q ss_pred             CCCcceeeecCCcEEEEEecccch---H---hhh---hcCCEEEEEEcChhHHHHHHHhcCc
Q 003460          599 SGFKELEVSEDCGVIIFEGVYALH---P---EIR---KSLDLWIAVVGGVHSHLISRVQRDK  651 (818)
Q Consensus       599 ~~~~~~~~~~~~~vvIvEG~~~~~---~---~l~---~~~D~~I~v~~~~d~rl~Rri~Rd~  651 (818)
                      .     .... ..-+|++|..--.   .   .+.   ...|..|+++++.+..+.|...|..
T Consensus        71 ~-----~~~~-~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~  126 (183)
T TIGR01359        71 I-----QADG-SKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ  126 (183)
T ss_pred             H-----hccC-CCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence            0     0011 3568999974421   1   111   1467899999999999999988864

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=98.42  E-value=6.3e-07  Score=89.45  Aligned_cols=135  Identities=14%  Similarity=0.178  Sum_probs=75.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCC---CcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDL---DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR  139 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~---~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~  139 (818)
                      ..|.|+|++||||||+|+.||+.+|+++++.|.+..........   +..+.+.+.+.-..+                  
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~------------------   64 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAA------------------   64 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHH------------------
Confidence            35888999999999999999999999999999975432211100   011111111110000                  


Q ss_pred             ccccccccCCccEEEEEe-cccchh---hhhcCCCEEEEEEcCHHHHHHHHHHhccCC-C-----cC----HHHHHHhhc
Q 003460          140 IGSKVIKGASSGVVIVDG-TYALDA---RLRSLLDIRVAVVGGVHFSLISKVQYDIGD-S-----CS----LDSLIDSIF  205 (818)
Q Consensus       140 ~~~~~~~~~~~~vVIvEG-~~l~~~---~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~-~-----~s----~e~~~~~~~  205 (818)
                      .  ...  .....||.-| ..++.+   .+....+++||++++.+..+.|...|.... +     .+    ..+..+...
T Consensus        65 ~--~~~--~~~~~vi~~ggg~vl~~~~~~~l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~  140 (171)
T PRK03731         65 L--EAV--TAPSTVIATGGGIILTEENRHFMRNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAERE  140 (171)
T ss_pred             H--HHh--cCCCeEEECCCCccCCHHHHHHHHhCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHH
Confidence            0  000  1122344433 333332   222346799999999999988887663211 1     11    223333444


Q ss_pred             hhhhhccCCccccCcEEEECC
Q 003460          206 PLFRKHIEPDLHHAQIRINNR  226 (818)
Q Consensus       206 p~~~~~Iep~~~~ADiII~N~  226 (818)
                      +.|.+       .|+++|+++
T Consensus       141 ~~y~~-------~a~~~Id~~  154 (171)
T PRK03731        141 ALYRE-------VAHHIIDAT  154 (171)
T ss_pred             HHHHH-------hCCEEEcCC
Confidence            55543       567888776

>PRK14531 adenylate kinase; Provisional

Probab=98.42  E-value=1.2e-06  Score=88.72  Aligned_cols=117  Identities=17%  Similarity=0.136  Sum_probs=68.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhcccc
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRIG  141 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~~~~  141 (818)
                      ..|.|.|++||||||+|+.|++.+|+.+|+++++.+.-.....+       +-+.+.. +..|..+.-........... 
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~-------~~~~~~~~~~~G~~v~d~l~~~~~~~~l-   74 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSA-------LGQEAEAVMNRGELVSDALVLAIVESQL-   74 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCH-------HHHHHHHHHHcCCCCCHHHHHHHHHHHH-
Confidence            46899999999999999999999999999998876532111110       1111222 12232111000000011111 


Q ss_pred             ccccccCCccEEEEEecccchh---hh-------hcCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460          142 SKVIKGASSGVVIVDGTYALDA---RL-------RSLLDIRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       142 ~~~~~~~~~~vVIvEG~~l~~~---~l-------~~~~D~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                          ......-+|+||...-..   .+       ...+|..+++++|.++...|...|..
T Consensus        75 ----~~~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r  130 (183)
T PRK14531         75 ----KALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGR  130 (183)
T ss_pred             ----hhccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCC
Confidence                011123467799855431   11       12468899999999999999887753

>PRK13947 shikimate kinase; Provisional

Probab=98.41  E-value=9.5e-07  Score=88.06  Aligned_cols=37  Identities=19%  Similarity=0.314  Sum_probs=33.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecc
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG   99 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~   99 (818)
                      ..|.|+|++||||||+|+.||+.||+++++.|.+...
T Consensus         2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~   38 (171)
T PRK13947          2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEK   38 (171)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhh
Confidence            3599999999999999999999999999999997553

>PRK02496 adk adenylate kinase; Provisional

Probab=98.41  E-value=7.3e-07  Score=90.24  Aligned_cols=137  Identities=15%  Similarity=0.071  Sum_probs=75.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG  141 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~  141 (818)
                      |+.|.|.|++||||||+|+.|++.+|+.++++|+..+.......+..   ......   +..|..+.-.........+. 
T Consensus         1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g---~~~~~~---~~~g~~~~~~~~~~~l~~~l-   73 (184)
T PRK02496          1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLG---IKAQGY---MDKGELVPDQLVLDLVQERL-   73 (184)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhH---HHHHHH---HHCCCccCHHHHHHHHHHHH-
Confidence            35689999999999999999999999999999987553221111100   001111   11222111000111111111 


Q ss_pred             ccccccCCccEEEEEeccc-------chh---hhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhh
Q 003460          142 SKVIKGASSGVVIVDGTYA-------LDA---RLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRK  210 (818)
Q Consensus       142 ~~~~~~~~~~vVIvEG~~l-------~~~---~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~  210 (818)
                         .......-+|+||.--       +..   .+....|..|+++++.+....|...|...  ...++++.+.+..|.+
T Consensus        74 ---~~~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~--dd~~~~~~~r~~~y~~  147 (184)
T PRK02496         74 ---QQPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRK--DDTEEVIRRRLEVYRE  147 (184)
T ss_pred             ---hCcCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHH
Confidence               0111223589999832       111   11234689999999999999888877432  2233444444444444

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=98.40  E-value=5.8e-07  Score=76.25  Aligned_cols=56  Identities=36%  Similarity=0.631  Sum_probs=45.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHh---CCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI  140 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~L---g~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~  140 (818)
                      +|+|+|++||||||+++.|++.+   ++.+++.                                               
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~-----------------------------------------------   33 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE-----------------------------------------------   33 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE-----------------------------------------------
Confidence            48999999999999999999875   1222211                                               


Q ss_pred             cccccccCCccEEEEEecccchh----hhhcCCCEEEEEEc
Q 003460          141 GSKVIKGASSGVVIVDGTYALDA----RLRSLLDIRVAVVG  177 (818)
Q Consensus       141 ~~~~~~~~~~~vVIvEG~~l~~~----~l~~~~D~~I~Vda  177 (818)
                                 ++|+||.+....    .+...+|++||+++
T Consensus        34 -----------~~I~eg~~~~~~~~~~~~~~~~d~~Iyld~   63 (69)
T cd02019          34 -----------IVILEGLYASYKSRDARIRDLADLKIYLDA   63 (69)
T ss_pred             -----------EEEecchhhhhhhHHhhccccccEEEEEEe
Confidence                       899999999875    57789999999997

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK00625 shikimate kinase; Provisional

Probab=98.40  E-value=8.8e-07  Score=89.00  Aligned_cols=137  Identities=10%  Similarity=0.060  Sum_probs=76.9

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCc-------ccccHHHHH-HHHHHHhcCCceeccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDF-------SSLDLSLLS-KNISDIRNGRRTKVPI  590 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p-------~t~D~~ll~-~~L~~L~~g~~v~~P~  590 (818)
                      .|.++|.+||||||+++.|++.++..++++|++......... +...       +.--+..+. +.+..+          
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~-~~~i~eif~~~Ge~~fr~~E~~~l~~l----------   70 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGAL-YSSPKEIYQAYGEEGFCREEFLALTSL----------   70 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCC-CCCHHHHHHHHCHHHHHHHHHHHHHHh----------
Confidence            377899999999999999999999999999988653221110 0000       000000000 111111          


Q ss_pred             ccccccccCCCcceeeecCCcEEEEEecccchHhhhhc---CCEEEEEEcChhHHHHHHHhcCccccCcccch-hhHHHh
Q 003460          591 FDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKS---LDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-NDIMMT  666 (818)
Q Consensus       591 yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~---~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~-~~~~~~  666 (818)
                                      .....||...|.....++....   -...||++++.+....|...|........... .+.+..
T Consensus        71 ----------------~~~~~VIs~GGg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~  134 (173)
T PRK00625         71 ----------------PVIPSIVALGGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQ  134 (173)
T ss_pred             ----------------ccCCeEEECCCCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHH
Confidence                            0111244455555555443333   35799999999999888877754332211111 233333


Q ss_pred             hcchhhhhccccCCcccEEEeCC
Q 003460          667 VFPMFQQHIEPHLVHAHLKIRND  689 (818)
Q Consensus       667 v~p~~~~~I~p~~~~ADivI~n~  689 (818)
                      ..|.|+       +.||++|+.+
T Consensus       135 R~~~Y~-------~~ad~~i~~~  150 (173)
T PRK00625        135 RIDRMR-------SIADYIFSLD  150 (173)
T ss_pred             HHHHHH-------HHCCEEEeCC
Confidence            444444       4589988654

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.40  E-value=1.1e-07  Score=89.55  Aligned_cols=109  Identities=21%  Similarity=0.294  Sum_probs=58.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCeEEec---cceecccc---cCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460           65 VGIGGPSGSGKTSLAEKLASVIGCTLISM---ENYRVGVD---EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN  138 (818)
Q Consensus        65 IgI~G~sGSGKSTlA~~La~~Lg~~vI~~---D~~~~~~~---~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~  138 (818)
                      |+|+|++||||||+|+.|++.++..+.+.   +.......   .......++.+.....+..+.....            
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------   68 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLGDIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIR------------   68 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCHHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHH------------
T ss_pred             CEEECCCCCCHHHHHHHHHHHHCcHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhc------------
Confidence            79999999999999999999872111111   00000000   1112233343333333222211100            


Q ss_pred             cccccccccCCccEEEEEecccchhhhhcCCCEE-EEEEcCHHHHHHHHHHhccCC
Q 003460          139 RIGSKVIKGASSGVVIVDGTYALDARLRSLLDIR-VAVVGGVHFSLISKVQYDIGD  193 (818)
Q Consensus       139 ~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~-I~Vda~~e~~l~Rri~Rd~~~  193 (818)
                             .......+|+||...... .....+.. |||+|+.+++.+|...|....
T Consensus        69 -------~~~~~~~~iid~~~~~~~-~~~~~~~~~i~L~~~~e~~~~R~~~R~~~~  116 (129)
T PF13238_consen   69 -------RMNKGRNIIIDGILSNLE-LERLFDIKFIFLDCSPEELRKRLKKRGRKE  116 (129)
T ss_dssp             -------HHTTTSCEEEEESSEEEC-ETTEEEESSEEEE--HHHHHHHHHCTTTSC
T ss_pred             -------ccccCCcEEEecccchhc-ccccceeeEEEEECCHHHHHHHHHhCCCCC
Confidence                   123345689999887652 11122233 999999999999998887543

...

>PRK14530 adenylate kinase; Provisional

Probab=98.39  E-value=1.5e-06  Score=90.42  Aligned_cols=116  Identities=14%  Similarity=0.144  Sum_probs=67.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC--CCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN--DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG  141 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~--~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~  141 (818)
                      .|+|.|++||||||+|+.|++.+|+.+|++|++.+.....+  ..+. ........   +..|..+.-..........  
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~-~~~~~~~~---~~~g~~~~d~~~~~~l~~~--   78 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDT-EYDTPGEY---MDAGELVPDAVVNEIVEEA--   78 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccc-hHHHHHHH---HHcCCCCCHHHHHHHHHHH--
Confidence            68999999999999999999999999999999866322111  0110 00111111   1222211100001000010  


Q ss_pred             ccccccCCccEEEEEecccch---hhhh--cCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          142 SKVIKGASSGVVIVDGTYALD---ARLR--SLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       142 ~~~~~~~~~~vVIvEG~~l~~---~~l~--~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                         +  ....-+|++|..--.   ..+.  ...|++||++++.+..+.|...|.
T Consensus        79 ---l--~~~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~  127 (215)
T PRK14530         79 ---L--SDADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRR  127 (215)
T ss_pred             ---H--hcCCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCC
Confidence               0  112357889853322   1221  247999999999999998887774

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=98.37  E-value=1.7e-06  Score=95.13  Aligned_cols=144  Identities=13%  Similarity=0.164  Sum_probs=79.0

Q ss_pred             hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhh
Q 003460           58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK  137 (818)
Q Consensus        58 ~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~  137 (818)
                      +.+....|+|+|++||||||+++.|++.||++++++|.........      ....+...     .|..    .|.....
T Consensus       129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~------~i~ei~~~-----~G~~----~fr~~e~  193 (309)
T PRK08154        129 RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGL------SVSEIFAL-----YGQE----GYRRLER  193 (309)
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCC------CHHHHHHH-----HCHH----HHHHHHH
Confidence            4455678999999999999999999999999999999754321110      00110000     0110    0000000


Q ss_pred             ccccccccccCCccEEEEEecccch-h----hhhcCCCEEEEEEcCHHHHHHHHHHhccCC----C-cCHHH---HHHhh
Q 003460          138 NRIGSKVIKGASSGVVIVDGTYALD-A----RLRSLLDIRVAVVGGVHFSLISKVQYDIGD----S-CSLDS---LIDSI  204 (818)
Q Consensus       138 ~~~~~~~~~~~~~~vVIvEG~~l~~-~----~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~----~-~s~e~---~~~~~  204 (818)
                      .... .... ....+||..|..... +    .+.. -.+.|||+++.+.+.+|...|....    . ...+.   ..+..
T Consensus       194 ~~l~-~ll~-~~~~~VI~~Ggg~v~~~~~~~~l~~-~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R  270 (309)
T PRK08154        194 RALE-RLIA-EHEEMVLATGGGIVSEPATFDLLLS-HCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASR  270 (309)
T ss_pred             HHHH-HHHh-hCCCEEEECCCchhCCHHHHHHHHh-CCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHH
Confidence            0000 0111 112345555554322 1    2222 2478999999999999888775321    1 11222   22333


Q ss_pred             chhhhhccCCccccCcEEEECCC
Q 003460          205 FPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       205 ~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      .|.|+        +||++|+|+.
T Consensus       271 ~~~y~--------~ad~~I~t~~  285 (309)
T PRK08154        271 EPLYA--------RADAVVDTSG  285 (309)
T ss_pred             HHHHH--------hCCEEEECCC
Confidence            45553        4999999874

>PRK13948 shikimate kinase; Provisional

Probab=98.37  E-value=1.9e-06  Score=87.33  Aligned_cols=40  Identities=20%  Similarity=0.326  Sum_probs=35.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG   99 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~   99 (818)
                      +.+..|.++|.+||||||+++.|++.||..+|++|.+...
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~   47 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIER   47 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHH
Confidence            4567899999999999999999999999999999987553

>PRK05541 adenylylsulfate kinase; Provisional

Probab=98.37  E-value=9.9e-07  Score=88.60  Aligned_cols=39  Identities=23%  Similarity=0.241  Sum_probs=31.7

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccccc
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYF  552 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy  552 (818)
                      ..++.+|.+.|++||||||+|+.|+..++     +.+++.|++.
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r   47 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR   47 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHH
Confidence            34678999999999999999999999885     4566666654

>PRK14532 adenylate kinase; Provisional

Probab=98.37  E-value=2.6e-06  Score=86.40  Aligned_cols=116  Identities=16%  Similarity=0.140  Sum_probs=67.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhh-cCCccccccchhhhhccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLT-EGKDTLIPMFDYQQKNRIGS  142 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~-~~~~i~~p~~d~~~~~~~~~  142 (818)
                      .|.|.|++||||||+|+.|++.+|+.+|++|++.+.....+.    +   +...+..+. .|+.+.-..........   
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~----~---~~~~~~~~~~~g~~~~~~~~~~~~~~~---   71 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGS----E---LGQRVKGIMDRGELVSDEIVIALIEER---   71 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCC----H---HHHHHHHHHHCCCccCHHHHHHHHHHH---
Confidence            378999999999999999999999999999998664221111    0   111122211 23221110111111111   


Q ss_pred             cccccCCccEEEEEecccch-------hhh---hcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          143 KVIKGASSGVVIVDGTYALD-------ARL---RSLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       143 ~~~~~~~~~vVIvEG~~l~~-------~~l---~~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                       .........+|++|..--.       ..+   ....|..|++++|.+....|...|.
T Consensus        72 -~~~~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~  128 (188)
T PRK14532         72 -LPEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRF  128 (188)
T ss_pred             -HhCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCc
Confidence             1111223468889864321       111   1246899999999999888887774

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.34  E-value=3.5e-07  Score=85.97  Aligned_cols=110  Identities=19%  Similarity=0.275  Sum_probs=62.0

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh----hhcccCCCcccccHHHHHHHHHHHhcCCceecccccccc
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ----VKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET  595 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~----~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~  595 (818)
                      |+|+|++||||||+|+.|++.++  ....|.++....    .....+......+.+.....+..+.....          
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------   68 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLG--DIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIR----------   68 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC--HHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHH----------
T ss_pred             CEEECCCCCCHHHHHHHHHHHHC--cHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhc----------
Confidence            78999999999999999999873  122222221100    00011222334455554444444332111          


Q ss_pred             cccCCCcceeeecCCcEEEEEecccchHhhhhcCCEE-EEEEcChhHHHHHHHhcCcc
Q 003460          596 GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLW-IAVVGGVHSHLISRVQRDKS  652 (818)
Q Consensus       596 ~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~-I~v~~~~d~rl~Rri~Rd~~  652 (818)
                                .......+|++|++.... .....+.. |+++++.+++..|...|...
T Consensus        69 ----------~~~~~~~~iid~~~~~~~-~~~~~~~~~i~L~~~~e~~~~R~~~R~~~  115 (129)
T PF13238_consen   69 ----------RMNKGRNIIIDGILSNLE-LERLFDIKFIFLDCSPEELRKRLKKRGRK  115 (129)
T ss_dssp             ----------HHTTTSCEEEEESSEEEC-ETTEEEESSEEEE--HHHHHHHHHCTTTS
T ss_pred             ----------ccccCCcEEEecccchhc-ccccceeeEEEEECCHHHHHHHHHhCCCC
Confidence                      113346789999987642 11122223 99999999999999887643

...

>PRK00279 adk adenylate kinase; Reviewed

Probab=98.34  E-value=2e-06  Score=89.38  Aligned_cols=116  Identities=16%  Similarity=0.094  Sum_probs=67.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRIGS  142 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~~~~~  142 (818)
                      .|.|.|++||||||+|+.|++.+|+.+|++++..+.......+       ....+.. +..|..+.-.........+.  
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~-------~~~~~~~~~~~g~~~p~~~~~~~i~~~l--   72 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTE-------LGKEAKSYMDAGELVPDEIVIGLVKERL--   72 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccch-------HHHHHHHHHHcCCcCCHHHHHHHHHHHH--
Confidence            4899999999999999999999999999999876632222111       1111211 11222111101111111111  


Q ss_pred             cccccCCccEEEEEecccch---hhh----h---cCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          143 KVIKGASSGVVIVDGTYALD---ARL----R---SLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       143 ~~~~~~~~~vVIvEG~~l~~---~~l----~---~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                        .......-+|+||.---.   ..+    .   ...|..|+++++.+..+.|...|.
T Consensus        73 --~~~~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~  128 (215)
T PRK00279         73 --AQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRR  128 (215)
T ss_pred             --hccCccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCc
Confidence              011112258999953221   112    1   246899999999999999988885

>PRK13949 shikimate kinase; Provisional

Probab=98.33  E-value=1.6e-06  Score=86.76  Aligned_cols=141  Identities=13%  Similarity=0.114  Sum_probs=76.6

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcc--cCCCccccc-HHHHHHHHHHHhcCCceecccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDF--KYDDFSSLD-LSLLSKNISDIRNGRRTKVPIFDLET  595 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~--~~d~p~t~D-~~ll~~~L~~L~~g~~v~~P~yD~~~  595 (818)
                      -|.|.|++||||||+++.|++.++..++++|++.........  -+.+.+.-- .+.-.+.+..+..             
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~-------------   69 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHEVAE-------------   69 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHHHHh-------------
Confidence            378899999999999999999999999999987653211000  011111000 1111112222110             


Q ss_pred             cccCCCcceeeecCCcEEEEEecccc-h---HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccc----hhhHHHhh
Q 003460          596 GARSGFKELEVSEDCGVIIFEGVYAL-H---PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS----QNDIMMTV  667 (818)
Q Consensus       596 ~~r~~~~~~~~~~~~~vvIvEG~~~~-~---~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~----~~~~~~~v  667 (818)
                                   ..++||-.|-... .   ..+....++.||++++.+..+.|...+.   +++...    ...+...+
T Consensus        70 -------------~~~~vis~Ggg~~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri~~~~---~~RP~~~~~~~~~~~~~i  133 (169)
T PRK13949         70 -------------FEDVVISTGGGAPCFFDNMELMNASGTTVYLKVSPEVLFVRLRLAK---QQRPLLKGKSDEELLDFI  133 (169)
T ss_pred             -------------CCCEEEEcCCcccCCHHHHHHHHhCCeEEEEECCHHHHHHHHhcCC---CCCCCCCCCChHHHHHHH
Confidence                         1134555554432 2   2344556899999999998666653221   122111    12233334


Q ss_pred             cchhhhhccccCCcccEEEeCC
Q 003460          668 FPMFQQHIEPHLVHAHLKIRND  689 (818)
Q Consensus       668 ~p~~~~~I~p~~~~ADivI~n~  689 (818)
                      ...|..+..-+.. ||++|+.+
T Consensus       134 ~~l~~~R~~~Y~~-ad~~id~~  154 (169)
T PRK13949        134 IEALEKRAPFYRQ-AKIIFNAD  154 (169)
T ss_pred             HHHHHHHHHHHHh-CCEEEECC
Confidence            4445555333334 89988754

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=98.32  E-value=1.3e-06  Score=96.03  Aligned_cols=41  Identities=22%  Similarity=0.338  Sum_probs=35.4

Q ss_pred             cCCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK  553 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~  553 (818)
                      +.++...|+++|++||||||+++.|++.+|+.++++|....
T Consensus       129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~  169 (309)
T PRK08154        129 RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIE  169 (309)
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHH
Confidence            34456789999999999999999999999999999886643

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.32  E-value=5.2e-06  Score=83.50  Aligned_cols=122  Identities=16%  Similarity=0.144  Sum_probs=61.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCe--EEeccceec-ccc-cCCCCCcccHHHHHHHHHhhhcCCccccccc---hhh
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCT--LISMENYRV-GVD-EGNDLDSIDFDALVQNLQDLTEGKDTLIPMF---DYQ  135 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~--vI~~D~~~~-~~~-~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~---d~~  135 (818)
                      .+|+|+|++||||||+++.|+..++..  +.....+.. ... +.........+.+....   ..+.-..+..+   ...
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g   78 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHRE---DGGAFALSWQAHGLSYG   78 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHH---HCCCEEEEEeecCcccc
Confidence            368999999999999999999987532  111111111 111 11111112222222111   11111111111   111


Q ss_pred             hhccccccccccCCccEEEEEecccchhhhhcCC--CEEEEEEcCHHHHHHHHHHhc
Q 003460          136 QKNRIGSKVIKGASSGVVIVDGTYALDARLRSLL--DIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~--D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                      ..... ...  ......+|++|.......++..+  -..||++++.+...+|...|.
T Consensus        79 ~~~~i-~~~--~~~g~~vv~~g~~~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~  132 (179)
T TIGR02322        79 IPAEI-DQW--LEAGDVVVVNGSRAVLPEARQRYPNLLVVNITASPDVLAQRLAARG  132 (179)
T ss_pred             ChHHH-HHH--HhcCCEEEEECCHHHHHHHHHHCCCcEEEEEECCHHHHHHHHHHcC
Confidence            11111 111  12345688888766444444332  278999999999999988775

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.30  E-value=1.6e-06  Score=105.50  Aligned_cols=164  Identities=16%  Similarity=0.180  Sum_probs=93.7

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhh----cccCCCcccccHHHHHHHHHHHhcCCceec---cc
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK----DFKYDDFSSLDLSLLSKNISDIRNGRRTKV---PI  590 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~----~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~---P~  590 (818)
                      .+|+|+||+||||||+|+.|++.+|..+++...+|+.....    ..+.++ ...|.+.+.+.+..+..+-.+.+   |.
T Consensus         2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (712)
T PRK09518          2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDA-ELVDEQVVTEAVGEFFTGLHFDISVDPD   80 (712)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcch-hhhhhhhhHHHHHHHHhCCcEEEecCCC
Confidence            37999999999999999999999999999999999874321    111111 12344555665555543322221   10


Q ss_pred             c--------ccc------------------------ccccCCCcceeeecC-------CcEEEEEecccchHhhhhcCCE
Q 003460          591 F--------DLE------------------------TGARSGFKELEVSED-------CGVIIFEGVYALHPEIRKSLDL  631 (818)
Q Consensus       591 y--------D~~------------------------~~~r~~~~~~~~~~~-------~~vvIvEG~~~~~~~l~~~~D~  631 (818)
                      .        |-.                        ...+.  .......+       ..=+|+||--.+.-- .+-.|+
T Consensus        81 ~~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~q--r~~~~~~~~~~~~~~~~~~v~eGRdigtvv-~p~a~~  157 (712)
T PRK09518         81 SPGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQ--RAYIAREASADSFSGGLGIVAEGRDITTVV-APDAEV  157 (712)
T ss_pred             CcEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHHH--HHHHhhcCccccccccCcEEEecCccceEE-ecCCCe
Confidence            0        000                        00000  00000011       124999999887622 233699


Q ss_pred             EEEEEcChhHHHHHHHhcCccccCcccch--hhHHHhhcchhhhhccccCCccc-EEEeCC
Q 003460          632 WIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAH-LKIRND  689 (818)
Q Consensus       632 ~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~--~~~~~~v~p~~~~~I~p~~~~AD-ivI~n~  689 (818)
                      ++|++++.+.|..||..+...   .+.+.  .+....=.... +.+.|.....| ++|+++
T Consensus       158 K~~l~A~~~~Ra~Rr~~~~~~---~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~da~~idts  214 (712)
T PRK09518        158 RILLTAREEVRQARRSGQDRS---ETPGVVLEDVAARDEADS-KVTSFLSAADGVTTLDNS  214 (712)
T ss_pred             EEEEECCHHHHHHHHHHhhhc---CCHHHHHHHHHHHhhhcc-cccCCCCCCCCeEEEECC
Confidence            999999999999999988743   22221  11111111122 56677544444 556665

>TIGR01351 adk adenylate kinases

Probab=98.29  E-value=2.1e-06  Score=88.91  Aligned_cols=116  Identities=17%  Similarity=0.139  Sum_probs=69.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhcccccc
Q 003460           65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRIGSK  143 (818)
Q Consensus        65 IgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~~~~~~  143 (818)
                      |.|.|++||||||+|+.|++.+|+.+|+++++.+.......+       +...+.. +..|..+.-.........+... 
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~-------~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~-   73 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTP-------LGKKAKEYMEKGELVPDEIVNQLVKERLTQ-   73 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccH-------HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-
Confidence            789999999999999999999999999999976642222111       1111222 1223222111111111111110 


Q ss_pred             ccccCCccEEEEEecccch---hhhh---c-CCCEEEEEEcCHHHHHHHHHHhc
Q 003460          144 VIKGASSGVVIVDGTYALD---ARLR---S-LLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       144 ~~~~~~~~vVIvEG~~l~~---~~l~---~-~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                        ......-+|+||..--.   ..+.   . ..|..|++++|.+..+.|...|.
T Consensus        74 --~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~  125 (210)
T TIGR01351        74 --NQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRR  125 (210)
T ss_pred             --CcccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence              01113468999963322   1222   2 47899999999999999988774

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=98.28  E-value=1.1e-06  Score=74.62  Aligned_cols=26  Identities=38%  Similarity=0.542  Sum_probs=23.1

Q ss_pred             EEEEEecccchH----hhhhcCCEEEEEEc
Q 003460          612 VIIFEGVYALHP----EIRKSLDLWIAVVG  637 (818)
Q Consensus       612 vvIvEG~~~~~~----~l~~~~D~~I~v~~  637 (818)
                      ++|+||.+....    .+.+..|++||+++
T Consensus        34 ~~I~eg~~~~~~~~~~~~~~~~d~~Iyld~   63 (69)
T cd02019          34 IVILEGLYASYKSRDARIRDLADLKIYLDA   63 (69)
T ss_pred             EEEecchhhhhhhHHhhccccccEEEEEEe
Confidence            899999999874    57889999999987

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.28  E-value=4.1e-06  Score=84.57  Aligned_cols=117  Identities=19%  Similarity=0.210  Sum_probs=68.9

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHH-hcCCceeccc---cc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDI-RNGRRTKVPI---FD  592 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L-~~g~~v~~P~---yD  592 (818)
                      ..+|+|.|++||||||+|+.|++.+|..++++|++.+.....    ..+    .   .+.+..+ .+|..  .|.   +.
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~----~~~----~---~~~~~~~~~~~~~--~~~~~~~~   69 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVAS----GSE----R---GKQLQAIMESGDL--VPLDTVLD   69 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhc----CCH----H---HHHHHHHHHCCCC--CCHHHHHH
Confidence            347899999999999999999999999999999987642110    000    0   1111111 11211  110   00


Q ss_pred             ccccccCCCcceeeecCCcEEEEEecccch---Hhhh---hcCCEEEEEEcChhHHHHHHHhcCc
Q 003460          593 LETGARSGFKELEVSEDCGVIIFEGVYALH---PEIR---KSLDLWIAVVGGVHSHLISRVQRDK  651 (818)
Q Consensus       593 ~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~l~---~~~D~~I~v~~~~d~rl~Rri~Rd~  651 (818)
                      . ..+..    ........-+|+||..-..   ..+.   ...|..||++++.+..+.|...|..
T Consensus        70 ~-l~~~~----~~~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~  129 (188)
T TIGR01360        70 L-LKDAM----VAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAE  129 (188)
T ss_pred             H-HHHHH----HcccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccc
Confidence            0 00000    0011224567889965321   1121   2468999999999999999888763

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.28  E-value=1.7e-06  Score=84.98  Aligned_cols=104  Identities=23%  Similarity=0.272  Sum_probs=59.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ  135 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~  135 (818)
                      ++.+|-|+|.+||||||+|+.|.+.|   |  +.+++.|.+..++...-..+.-|.....+.+..+.             
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A-------------   67 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVA-------------   67 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHH-------------
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHH-------------
Confidence            36799999999999999999999988   3  67889999887654422222222222222211110             


Q ss_pred             hhccccccccccCCccEEEEEecccch---hhhhcCCC----EEEEEEcCHHHHHHH
Q 003460          136 QKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSLLD----IRVAVVGGVHFSLIS  185 (818)
Q Consensus       136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~~D----~~I~Vda~~e~~l~R  185 (818)
                              ........++|+..+-.+.   ...+..+.    +-|||+||.+++.+|
T Consensus        68 --------~ll~~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~R  116 (156)
T PF01583_consen   68 --------KLLADQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKR  116 (156)
T ss_dssp             --------HHHHHTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHH
T ss_pred             --------HHHHhCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHh
Confidence                    0111223466666665554   23343333    669999999998655

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.27  E-value=5.1e-06  Score=85.26  Aligned_cols=41  Identities=32%  Similarity=0.389  Sum_probs=34.3

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHh-----CCeEEeccceecc
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRVG   99 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~L-----g~~vI~~D~~~~~   99 (818)
                      ..++.+|+|+|.+||||||+++.|+..+     ++.+++.|++...
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~   66 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHG   66 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhh
Confidence            4667899999999999999999999977     3577888887643

>PRK14527 adenylate kinase; Provisional

Probab=98.27  E-value=4.6e-06  Score=85.01  Aligned_cols=120  Identities=15%  Similarity=0.159  Sum_probs=70.8

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHH-HhcCCceecccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDL  593 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~-L~~g~~v~~P~yD~  593 (818)
                      ..+.+|.|.|++||||||+|+.|++.+|...+++|+..+.....       ++    .+.+.+.. +.+|..+.......
T Consensus         4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~-------~~----~~~~~~~~~~~~g~~~p~~~~~~   72 (191)
T PRK14527          4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVAR-------GT----ELGQRAKPIMEAGDLVPDELILA   72 (191)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhc-------Cc----HHHHHHHHHHHcCCCCcHHHHHH
Confidence            45778999999999999999999999999999999998753211       00    01111111 12232211100000


Q ss_pred             cccccCCCcceeeecCCcEEEEEecccchH---hhh-------hcCCEEEEEEcChhHHHHHHHhcCc
Q 003460          594 ETGARSGFKELEVSEDCGVIIFEGVYALHP---EIR-------KSLDLWIAVVGGVHSHLISRVQRDK  651 (818)
Q Consensus       594 ~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~---~l~-------~~~D~~I~v~~~~d~rl~Rri~Rd~  651 (818)
                      ...++.     . ..+..-+|+||..--..   .+.       ..++..+|++++.++.+.|...|..
T Consensus        73 l~~~~l-----~-~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~  134 (191)
T PRK14527         73 LIRDEL-----A-GMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERAR  134 (191)
T ss_pred             HHHHHH-----h-cCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcc
Confidence            000110     0 00113488999653221   111       2367789999999999999998853

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=98.27  E-value=1e-07  Score=102.87  Aligned_cols=172  Identities=20%  Similarity=0.211  Sum_probs=93.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--ecccccCCC-CCcccHHHHHHHHHhhhcCCccccccchhhhh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGND-LDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK  137 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~~-~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~  137 (818)
                      .+.+|.|+||+|||||-+|-.||+.+|+.|||.|++  |++++-+.. |..-+.....++|-++..-.+ .+...++...
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e-~ysa~~f~~~   80 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTE-SYSAAEFQRD   80 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccc-cccHHHHHHH
Confidence            467899999999999999999999999999999996  888765432 322222222222222222111 1112222221


Q ss_pred             ccccccccccCCccEEEEEecccchhhhhc-CCCEEEEEEcCHHHHHHHHHHhccCCCc--CHHHHHHhhchhhhhccCC
Q 003460          138 NRIGSKVIKGASSGVVIVDGTYALDARLRS-LLDIRVAVVGGVHFSLISKVQYDIGDSC--SLDSLIDSIFPLFRKHIEP  214 (818)
Q Consensus       138 ~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~-~~D~~I~Vda~~e~~l~Rri~Rd~~~~~--s~e~~~~~~~p~~~~~Iep  214 (818)
                      .......+.....-.++|.|.+++...+.. +.+..   .++.+.  +++........+  .+.+.+....|        
T Consensus        81 a~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~~~p---~~~~~~--r~~~~~~~~~~g~~~L~~~L~~~Dp--------  147 (308)
T COG0324          81 ALAAIDDILARGKLPILVGGTGLYLKALLEGLSLLP---EADPEV--RRRLEAELAELGNDALHAELKKIDP--------  147 (308)
T ss_pred             HHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCCCCC---CCCHHH--HHHHHHHHHhcCHHHHHHHHHhhCH--------
Confidence            111111222333446899999998755443 22221   223333  232211111111  11222333333        


Q ss_pred             ccccCcEEEECCCCCChhhhhhcccCccc-CCcccccccccc
Q 003460          215 DLHHAQIRINNRFVSSFREAIYKLKCRSE-APGACSISAFQG  255 (818)
Q Consensus       215 ~~~~ADiII~N~~~~~~~~~~~~l~~~~~-~l~~~~~~~~~~  255 (818)
                        ..|.-|-+||       ++...++++. .++|++.+.+..
T Consensus       148 --~~a~~i~pnD-------~~Ri~RALEv~~~tGk~~s~~~~  180 (308)
T COG0324         148 --EAAAKIHPND-------PQRIIRALEVYYLTGKPISELQK  180 (308)
T ss_pred             --HHHHhcCCCc-------hhHHHHHHHHHHHHCCCHHHHhh
Confidence              3444566688       7888888887 777777666543

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.26  E-value=2.6e-06  Score=83.10  Aligned_cols=35  Identities=26%  Similarity=0.459  Sum_probs=32.1

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      |.|.|++||||||+|+.|++.+|...++.|.+...
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~   36 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQ   36 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHH
Confidence            67899999999999999999999999999988653

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PLN02199 shikimate kinase

Probab=98.26  E-value=6.1e-06  Score=88.71  Aligned_cols=58  Identities=22%  Similarity=0.353  Sum_probs=43.4

Q ss_pred             ccchhhHHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceeccc
Q 003460           40 SFDHGYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV  100 (818)
Q Consensus        40 s~~~~~~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~  100 (818)
                      ||++.  .+-+..+.... .-+...|.++|.+||||||+++.||+.+|+.+|++|.+....
T Consensus        83 ~~de~--~Lk~~a~~i~~-~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~  140 (303)
T PLN02199         83 PFDED--ILKRKAEEVKP-YLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQA  140 (303)
T ss_pred             CCCHH--HHHHHHHHHHH-HcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHH
Confidence            78764  24344444333 223456899999999999999999999999999999976643

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=98.25  E-value=8e-06  Score=80.84  Aligned_cols=34  Identities=29%  Similarity=0.483  Sum_probs=31.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460           65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV   98 (818)
Q Consensus        65 IgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~   98 (818)
                      |+|+|++||||||+|+.|+..+|..+++.|+++.
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~   34 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHP   34 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccC
Confidence            5789999999999999999999999999999854

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PTZ00088 adenylate kinase 1; Provisional

Probab=98.24  E-value=4.7e-06  Score=87.48  Aligned_cols=122  Identities=18%  Similarity=0.150  Sum_probs=72.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhh-cCCccccccchhhhhcc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLT-EGKDTLIPMFDYQQKNR  139 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~-~~~~i~~p~~d~~~~~~  139 (818)
                      .++.|.|.|++||||||+|+.|++.+|+.+|++|++.+........       +...+..+. .|..+.-.........+
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~-------lg~~i~~~~~~G~lvpd~iv~~lv~~~   77 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTT-------IGKEIQKVVTSGNLVPDNLVIAIVKDE   77 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCCh-------HHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence            4566999999999999999999999999999999987743222111       112222222 23211101111111111


Q ss_pred             ccccccccCCccEEEEEecccc-h--hhhh--cCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460          140 IGSKVIKGASSGVVIVDGTYAL-D--ARLR--SLLDIRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       140 ~~~~~~~~~~~~vVIvEG~~l~-~--~~l~--~~~D~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                      ...  ........+|+||.--- .  ..+.  ...|..++++++.+..+.|...|..
T Consensus        78 l~~--~~~~~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr~  132 (229)
T PTZ00088         78 IAK--VTDDCFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRRI  132 (229)
T ss_pred             HHh--hccccCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCcC
Confidence            100  00122456899996211 1  1111  3478999999999999988888753

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.24  E-value=4.4e-06  Score=83.96  Aligned_cols=28  Identities=32%  Similarity=0.417  Sum_probs=23.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeE
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTL   90 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~v   90 (818)
                      .+|+|.|++||||||+++.|+..++...
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~   29 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDPNLK   29 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCcccc
Confidence            4799999999999999999998665433

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=98.24  E-value=2e-07  Score=101.74  Aligned_cols=42  Identities=36%  Similarity=0.434  Sum_probs=37.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc--eeccccc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDE  102 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~--~~~~~~~  102 (818)
                      .+.+|+|+||+||||||+|..|++.+++.+|++|+  +|+++.-
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i   46 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDI   46 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccc
Confidence            35789999999999999999999999999999999  5887654

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=98.22  E-value=1.1e-05  Score=81.72  Aligned_cols=105  Identities=20%  Similarity=0.258  Sum_probs=62.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchh
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDY  134 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~  134 (818)
                      ..+.+|+|+|++||||||+++.|+..+   |  +.+++.|.+.+.+......   ..+...+.+..+.            
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~---~~~~~~~~~~~~~------------   80 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGF---SEEDRKENIRRIG------------   80 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCC---CHHHHHHHHHHHH------------
Confidence            556899999999999999999999887   2  5678888876543321111   1111111111110            


Q ss_pred             hhhccccccccccCCccEEEEEecccch---hhhhcCCC----EEEEEEcCHHHHHHH
Q 003460          135 QQKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSLLD----IRVAVVGGVHFSLIS  185 (818)
Q Consensus       135 ~~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~~D----~~I~Vda~~e~~l~R  185 (818)
                         . ..  ........+||++++....   ..++..+.    ..+|++++.+.+..|
T Consensus        81 ---~-~~--~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R  132 (184)
T TIGR00455        81 ---E-VA--KLFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR  132 (184)
T ss_pred             ---H-HH--HHHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh
Confidence               0 00  0011234578888876654   23333332    569999999988777

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=98.21  E-value=8.8e-06  Score=81.79  Aligned_cols=37  Identities=24%  Similarity=0.383  Sum_probs=31.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCe--EEeccceecc
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCT--LISMENYRVG   99 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~--vI~~D~~~~~   99 (818)
                      .+|.++|++||||||+|+.|++.++..  .++.|+|+..
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~   41 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA   41 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh
Confidence            479999999999999999999988754  4588887654

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=98.21  E-value=1.9e-06  Score=87.64  Aligned_cols=64  Identities=20%  Similarity=0.185  Sum_probs=45.9

Q ss_pred             cCCEEEEEEcChhHHHHHHHhcCccccCcccch------hhHHHhhcchhhhhccccCCcccEEEeCC-CCCccCc
Q 003460          628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRND-FDPVLSP  696 (818)
Q Consensus       628 ~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~------~~~~~~v~p~~~~~I~p~~~~ADivI~n~-~~~~l~~  696 (818)
                      .-|+.||++++.++-+.|-.+|     |+..+.      .+|+..+...|..|++-...+-++.|+.+ ++.....
T Consensus       126 ~PdllIyLd~~~e~~l~RI~~R-----gR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~~~  196 (216)
T COG1428         126 RPDLLIYLDASLETLLRRIAKR-----GRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGIDGDSIDFVNNE  196 (216)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHh-----CCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeeeccceecccCCH
Confidence            5689999999999877776554     555552      36888888888888887766777877643 4544333

>PRK13808 adenylate kinase; Provisional

Probab=98.20  E-value=3.7e-06  Score=92.34  Aligned_cols=115  Identities=18%  Similarity=0.125  Sum_probs=68.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhh-hcCCccccccchhhhhccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKNRIGS  142 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l-~~~~~i~~p~~d~~~~~~~~~  142 (818)
                      .|.|.||+||||||+|..|++.+|+.+|++|++.+.......+.    .   ..+..+ ..|..+.-.........+.. 
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~----g---~~~~~~~~~G~lVPdeiv~~li~e~l~-   73 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPV----G---LKAKDIMASGGLVPDEVVVGIISDRIE-   73 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChh----h---HHHHHHHHcCCCCCHHHHHHHHHHHHh-
Confidence            37889999999999999999999999999999876422221111    0   111111 12221111111111111111 


Q ss_pred             cccccCCccEEEEEecccchh---h----hh---cCCCEEEEEEcCHHHHHHHHHHh
Q 003460          143 KVIKGASSGVVIVDGTYALDA---R----LR---SLLDIRVAVVGGVHFSLISKVQY  189 (818)
Q Consensus       143 ~~~~~~~~~vVIvEG~~l~~~---~----l~---~~~D~~I~Vda~~e~~l~Rri~R  189 (818)
                         ......-+|+||.---..   .    +.   -..|++|++++|.++.+.|...|
T Consensus        74 ---~~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R  127 (333)
T PRK13808         74 ---QPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETR  127 (333)
T ss_pred             ---cccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcC
Confidence               111223589999643221   1    11   14799999999999999998877

>PRK14737 gmk guanylate kinase; Provisional

Probab=98.19  E-value=6.6e-06  Score=83.70  Aligned_cols=161  Identities=11%  Similarity=0.022  Sum_probs=81.5

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET  595 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~  595 (818)
                      ++++|.|+|||||||||+++.|.+...-...+...-=++...++.+-.+-.-.+.   .+....+..|+-++.-.|.-..
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~---~~F~~~i~~~~f~e~~~~~g~~   79 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTI---EEFKKGIADGEFLEWAEVHDNY   79 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCH---HHHHHHHHcCCeEEEEEECCee
Confidence            6788999999999999999999876532122221111111111111000000111   2223445566666665554322


Q ss_pred             cccCCCcce-eeecCCcEEEEEecccchHhhhhcCC---EEEEEEcCh-hHHHHHHHhcCccccCcccch-hhHHHhhcc
Q 003460          596 GARSGFKEL-EVSEDCGVIIFEGVYALHPEIRKSLD---LWIAVVGGV-HSHLISRVQRDKSRMGCFMSQ-NDIMMTVFP  669 (818)
Q Consensus       596 ~~r~~~~~~-~~~~~~~vvIvEG~~~~~~~l~~~~D---~~I~v~~~~-d~rl~Rri~Rd~~~rg~~~~~-~~~~~~v~p  669 (818)
                      ..-.. ... .......++|++.-.-+...++..+.   ..||+.+|. +....|+..|+..    +.+. .+.+....+
T Consensus        80 YGt~~-~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~----s~e~i~~Rl~~~~~  154 (186)
T PRK14737         80 YGTPK-AFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTD----SEESIEKRIENGII  154 (186)
T ss_pred             ecCcH-HHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCC----CHHHHHHHHHHHHH
Confidence            11100 111 12345678888865555455555543   689998865 5566666665421    2111 222222211


Q ss_pred             hhhhhccccCCcccEEEeCC
Q 003460          670 MFQQHIEPHLVHAHLKIRND  689 (818)
Q Consensus       670 ~~~~~I~p~~~~ADivI~n~  689 (818)
                       ..    .....+|.+|.|+
T Consensus       155 -e~----~~~~~~D~vI~N~  169 (186)
T PRK14737        155 -EL----DEANEFDYKIIND  169 (186)
T ss_pred             -HH----hhhccCCEEEECc
Confidence             11    2246799999997

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=98.19  E-value=3.2e-06  Score=85.83  Aligned_cols=117  Identities=18%  Similarity=0.109  Sum_probs=67.6

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccccccC
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARS  599 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r~  599 (818)
                      |.|.|++||||||+|+.|++.+|+.++++|+..+......       +.....+.+.   +.+|..+.-.........+.
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~-------~~~~~~~~~~---~~~g~~~~~~~~~~l~~~~l   71 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASG-------TELGKKAKEY---IDSGKLVPDEIVIKLLKERL   71 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcC-------ChHHHHHHHH---HHcCCccCHHHHHHHHHHHH
Confidence            6789999999999999999999999999999887532111       0001111111   11222111100000000000


Q ss_pred             CCcceeeecCCcEEEEEecccch------Hhhhh---cCCEEEEEEcChhHHHHHHHhcCc
Q 003460          600 GFKELEVSEDCGVIIFEGVYALH------PEIRK---SLDLWIAVVGGVHSHLISRVQRDK  651 (818)
Q Consensus       600 ~~~~~~~~~~~~vvIvEG~~~~~------~~l~~---~~D~~I~v~~~~d~rl~Rri~Rd~  651 (818)
                           .......-+|++|.-.-.      .....   ..+..|+++++.++.+.|...|..
T Consensus        72 -----~~~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~  127 (194)
T cd01428          72 -----KKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRI  127 (194)
T ss_pred             -----hcccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence                 000012457888854321      11222   568999999999999999988864

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=98.18  E-value=8.5e-06  Score=80.44  Aligned_cols=46  Identities=30%  Similarity=0.446  Sum_probs=39.3

Q ss_pred             hcCCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceecccccC
Q 003460           58 KKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEG  103 (818)
Q Consensus        58 ~~~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~~  103 (818)
                      .+.++.+|-+||.|||||||+|.+|.+.|   |  +.++|.|....++...
T Consensus        19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~d   69 (197)
T COG0529          19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRD   69 (197)
T ss_pred             hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCC
Confidence            45667999999999999999999999988   4  6789999998877644

>PRK14528 adenylate kinase; Provisional

Probab=98.17  E-value=9e-06  Score=82.70  Aligned_cols=118  Identities=14%  Similarity=0.090  Sum_probs=69.0

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR  598 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r  598 (818)
                      .|.|.|++||||||+|+.|++.+|+.++++|+..+..-...    .      ++..+.-.-+.+|+.+.-........++
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~----~------~~g~~~~~~~~~g~lvp~~~~~~~~~~~   72 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQ----T------AMGIEAKRYMDAGDLVPDSVVIGIIKDR   72 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcC----C------HHHHHHHHHHhCCCccCHHHHHHHHHHH
Confidence            47789999999999999999999999999999987521110    0      0000111112233322111111111111


Q ss_pred             CCCcceeeecCCcEEEEEecccch-------Hhhh---hcCCEEEEEEcChhHHHHHHHhcCc
Q 003460          599 SGFKELEVSEDCGVIIFEGVYALH-------PEIR---KSLDLWIAVVGGVHSHLISRVQRDK  651 (818)
Q Consensus       599 ~~~~~~~~~~~~~vvIvEG~~~~~-------~~l~---~~~D~~I~v~~~~d~rl~Rri~Rd~  651 (818)
                      ..     ......-+|+||.---.       ..+.   ...|..|+++++.+..+.|...|..
T Consensus        73 l~-----~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~  130 (186)
T PRK14528         73 IR-----EADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAE  130 (186)
T ss_pred             Hh-----CcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCcc
Confidence            10     00112458999953211       1111   2479999999999999999988854

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=98.17  E-value=3.3e-07  Score=99.39  Aligned_cols=172  Identities=13%  Similarity=0.014  Sum_probs=92.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--ecccccCC-CCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN  138 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~-~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~  138 (818)
                      +.+|.|+||+|||||.||-.||+. +..+||+|++  |++++-.. .|..-+.....++|-++....+. +...++....
T Consensus         4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~-~sv~~f~~~a   81 (300)
T PRK14729          4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKE-YNLGIFYKEA   81 (300)
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCc-eeHHHHHHHH
Confidence            358999999999999999999998 6799999995  88876543 23333333333344333322221 1111221111


Q ss_pred             cccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhhccCCcccc
Q 003460          139 RIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHH  218 (818)
Q Consensus       139 ~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~~Iep~~~~  218 (818)
                      ...-..+.......|++.|++++-..+..-++..  -..+.+.+  ..+..... ....+       ..+++..+-+...
T Consensus        82 ~~~i~~i~~~gk~PilvGGTglYi~all~gl~~~--p~~~~~~r--~~~~~~~~-~~g~~-------~l~~~L~~~DP~~  149 (300)
T PRK14729         82 LKIIKELRQQKKIPIFVGGSAFYFKHLKYGLPST--PPVSSKIR--IYVNNLFT-LKGKS-------YLLEELKRVDFIR  149 (300)
T ss_pred             HHHHHHHHHCCCCEEEEeCchHHHHHHHcCCCCC--CCCCHHHH--HHHHHHHH-hcCHH-------HHHHHHHhcCHHH
Confidence            1111122234455799999999886655322211  01233322  11211111 11111       1222222333345


Q ss_pred             CcEEEECCCCCChhhhhhcccCccc-CCccccccccc
Q 003460          219 AQIRINNRFVSSFREAIYKLKCRSE-APGACSISAFQ  254 (818)
Q Consensus       219 ADiII~N~~~~~~~~~~~~l~~~~~-~l~~~~~~~~~  254 (818)
                      |.-+-+||       ++.++++.+. ..+|...+.+.
T Consensus       150 A~~i~pnd-------~~Ri~RALEv~~~tG~~~s~~~  179 (300)
T PRK14729        150 YESINKND-------IYRIKRSLEVYYQTGIPISQFL  179 (300)
T ss_pred             HhhCCcCC-------HHHHHHHHHHHHHhCCChHhhh
Confidence            55566677       7889999888 56776665543

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=98.17  E-value=6.6e-06  Score=89.76  Aligned_cols=39  Identities=21%  Similarity=0.302  Sum_probs=34.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh-CCeEEeccceeccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGV  100 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L-g~~vI~~D~~~~~~  100 (818)
                      +.+|.++|++||||||+|+.|++.+ ++.+++.|.+...+
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~   41 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSL   41 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHh
Confidence            4688999999999999999999999 89999999986543

>PLN02165 adenylate isopentenyltransferase

Probab=98.17  E-value=2.9e-06  Score=92.91  Aligned_cols=44  Identities=27%  Similarity=0.299  Sum_probs=38.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--ecccccC
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEG  103 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~  103 (818)
                      ....+|+|.||+||||||||..||..++..+|++|.+  |+++.-.
T Consensus        41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIg   86 (334)
T PLN02165         41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKIT   86 (334)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccc
Confidence            3445899999999999999999999999999999996  7776544

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=98.15  E-value=1.4e-05  Score=80.65  Aligned_cols=117  Identities=20%  Similarity=0.229  Sum_probs=72.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRIGS  142 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~~~~~  142 (818)
                      .|.|.|+|||||||+|+.|++.++.+.||+|+++++......       .+...... +..++-+.-..+......+...
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t-------~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~   74 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERT-------ELGEEIKKYIDKGELVPDEIVNGLVKERLDE   74 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCC-------hHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence            588999999999999999999999999999999885433221       12222222 2223211111222333333221


Q ss_pred             cccccCCccEEEEEecccch-------hhhh---cCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460          143 KVIKGASSGVVIVDGTYALD-------ARLR---SLLDIRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       143 ~~~~~~~~~vVIvEG~~l~~-------~~l~---~~~D~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                      .   .... .+|++|.--..       ..+.   .-.|..+.++.+.+..+.|...|..
T Consensus        75 ~---d~~~-~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~  129 (178)
T COG0563          75 A---DCKA-GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV  129 (178)
T ss_pred             h---cccC-eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc
Confidence            1   1112 58888763322       1111   3568999999999888888888764

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.14  E-value=1e-05  Score=81.22  Aligned_cols=39  Identities=33%  Similarity=0.407  Sum_probs=32.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceecc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVG   99 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~   99 (818)
                      ...+|+|+|++||||||+|+.|+..+.     +.+++.|.+...
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~   46 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTN   46 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHH
Confidence            346899999999999999999999872     567899887554

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=98.13  E-value=2.3e-05  Score=76.33  Aligned_cols=36  Identities=25%  Similarity=0.453  Sum_probs=33.1

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      +|.++|++||||||+|+.|++.+++.+++.|++...
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~   36 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPP   36 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccH
Confidence            477899999999999999999999999999999864

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK13946 shikimate kinase; Provisional

Probab=98.12  E-value=7.1e-06  Score=83.22  Aligned_cols=37  Identities=19%  Similarity=0.355  Sum_probs=32.9

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF  552 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy  552 (818)
                      .+..|.++|++||||||+++.|++.||..+++.|...
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~   45 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEI   45 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHH
Confidence            3457889999999999999999999999999999753

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=98.12  E-value=5.8e-06  Score=82.54  Aligned_cols=36  Identities=25%  Similarity=0.465  Sum_probs=32.2

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      .|.|+|++||||||+++.|++.+|..+++.|.+...
T Consensus         4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~   39 (171)
T PRK03731          4 PLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQS   39 (171)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHH
Confidence            367789999999999999999999999999988653

>PRK14530 adenylate kinase; Provisional

Probab=98.12  E-value=6.3e-06  Score=85.66  Aligned_cols=118  Identities=14%  Similarity=0.170  Sum_probs=67.4

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR  598 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r  598 (818)
                      .|.|.|++||||||+|+.|++.+|+.++++|++.+.......+  +.++ .+.....   .+..|..+.-..........
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~--~~~~-~~~~~~~---~~~~g~~~~d~~~~~~l~~~   78 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDIS--DMDT-EYDTPGE---YMDAGELVPDAVVNEIVEEA   78 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcc--cccc-hHHHHHH---HHHcCCCCCHHHHHHHHHHH
Confidence            4788999999999999999999999999999998853211100  0000 0001111   12233221111100000000


Q ss_pred             CCCcceeeecCCcEEEEEecccch---Hhhh--hcCCEEEEEEcChhHHHHHHHhcC
Q 003460          599 SGFKELEVSEDCGVIIFEGVYALH---PEIR--KSLDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       599 ~~~~~~~~~~~~~vvIvEG~~~~~---~~l~--~~~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                              ....+-+|++|.-...   ..+.  ...|..|+++++.+..+.|...|.
T Consensus        79 --------l~~~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~  127 (215)
T PRK14530         79 --------LSDADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRR  127 (215)
T ss_pred             --------HhcCCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCC
Confidence                    0112357889843322   1222  237899999999999998887774

>PLN02674 adenylate kinase

Probab=98.12  E-value=2.4e-05  Score=82.64  Aligned_cols=120  Identities=12%  Similarity=-0.003  Sum_probs=72.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKN  138 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~  138 (818)
                      .....|.|.|++||||||+|+.|++.+|+.+|+++++.+.......+       +-..+.. +..|+-+.-.........
T Consensus        29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~-------~g~~i~~~~~~G~lvpd~iv~~lv~~  101 (244)
T PLN02674         29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTP-------LGIKAKEAMDKGELVSDDLVVGIIDE  101 (244)
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccCh-------hhHHHHHHHHcCCccCHHHHHHHHHH
Confidence            33466889999999999999999999999999999987643222211       1111121 123332221111111111


Q ss_pred             cccccccccCCccEEEEEecccch---hh----hh---cCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          139 RIGSKVIKGASSGVVIVDGTYALD---AR----LR---SLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       139 ~~~~~~~~~~~~~vVIvEG~~l~~---~~----l~---~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                      +..    ......-+|++|.=--.   ..    +.   -..|.+|+++++.+..++|...|.
T Consensus       102 ~l~----~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~  159 (244)
T PLN02674        102 AMK----KPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRW  159 (244)
T ss_pred             HHh----CcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccc
Confidence            111    11122468889873322   11    11   247899999999999999988874

>PRK14531 adenylate kinase; Provisional

Probab=98.10  E-value=1.7e-05  Score=80.42  Aligned_cols=115  Identities=14%  Similarity=0.179  Sum_probs=66.6

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHH-HhcCCceecccccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDLETGA  597 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~-L~~g~~v~~P~yD~~~~~  597 (818)
                      .|.|.|++||||||+|+.|++.+|+.++|++|..+.+....       +    .+.+.+.. +..|..+.-........+
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~-------~----~~~~~~~~~~~~G~~v~d~l~~~~~~~   72 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAG-------S----ALGQEAEAVMNRGELVSDALVLAIVES   72 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcC-------C----HHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            57889999999999999999999999999999988632111       0    01111111 122321110000000000


Q ss_pred             cCCCcceeeecCCcEEEEEecccchH---hhh-------hcCCEEEEEEcChhHHHHHHHhcC
Q 003460          598 RSGFKELEVSEDCGVIIFEGVYALHP---EIR-------KSLDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       598 r~~~~~~~~~~~~~vvIvEG~~~~~~---~l~-------~~~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                      +.     ... ...-+|+||...-..   .+.       ..+|..++++++.++...|...|.
T Consensus        73 ~l-----~~~-~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~  129 (183)
T PRK14531         73 QL-----KAL-NSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG  129 (183)
T ss_pred             HH-----hhc-cCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC
Confidence            00     000 123357798865321   111       135789999999999999988774

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=98.09  E-value=1.7e-05  Score=78.73  Aligned_cols=127  Identities=14%  Similarity=0.078  Sum_probs=78.4

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN  138 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~  138 (818)
                      ...+.||.|.|++||||-|.|..+++.+|..++|+++..+.-....  ++-....+.+.   +..|.-+.......-   
T Consensus         5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~--gse~g~~I~~~---i~~G~iVP~ei~~~L---   76 (195)
T KOG3079|consen    5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASA--GSERGALIKEI---IKNGDLVPVEITLSL---   76 (195)
T ss_pred             ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccc--cChHHHHHHHH---HHcCCcCcHHHHHHH---
Confidence            3567899999999999999999999999999999999866332221  11111122222   223332221111111   


Q ss_pred             cccccccccCCccEEEEEeccc-------chhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC
Q 003460          139 RIGSKVIKGASSGVVIVDGTYA-------LDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS  194 (818)
Q Consensus       139 ~~~~~~~~~~~~~vVIvEG~~l-------~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~  194 (818)
                       ..............++||.==       ++..+....|+++|++|+.++++.|.+.|....+
T Consensus        77 -L~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~  138 (195)
T KOG3079|consen   77 -LEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNS  138 (195)
T ss_pred             -HHHHHHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCC
Confidence             111111122223388888632       2233333579999999999999999999997633

>TIGR01351 adk adenylate kinases

Probab=98.09  E-value=6.3e-06  Score=85.37  Aligned_cols=116  Identities=19%  Similarity=0.210  Sum_probs=68.0

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHH-HhcCCceeccccccccccc
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDLETGAR  598 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~-L~~g~~v~~P~yD~~~~~r  598 (818)
                      |.|.|++||||||+|+.|++.+|+.+||++|..+..-...    .+       +.+.+.. +.+|..+.--.......++
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~----~~-------~~~~~~~~~~~g~~vp~~~~~~l~~~~   70 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAG----TP-------LGKKAKEYMEKGELVPDEIVNQLVKER   70 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccc----cH-------HHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence            5679999999999999999999999999999987521110    00       0111111 2233322111111111111


Q ss_pred             CCCcceeeecCCcEEEEEecccch---Hhhh---h-cCCEEEEEEcChhHHHHHHHhcC
Q 003460          599 SGFKELEVSEDCGVIIFEGVYALH---PEIR---K-SLDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       599 ~~~~~~~~~~~~~vvIvEG~~~~~---~~l~---~-~~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                      ..    .......-+|++|.---.   ..+.   . ..|..|+++++.+..+.|...|.
T Consensus        71 i~----~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~  125 (210)
T TIGR01351        71 LT----QNQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRR  125 (210)
T ss_pred             Hh----cCcccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence            10    000113458999953322   1222   2 46899999999999999988774

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=98.09  E-value=1.7e-05  Score=93.89  Aligned_cols=117  Identities=19%  Similarity=0.179  Sum_probs=68.2

Q ss_pred             HHHHHHHHH-hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------eEEeccceecccccCCCCCcccHHHHHHHHHhh
Q 003460           49 VKSIQELRE-KKGGIVTVGIGGPSGSGKTSLAEKLASVIGC------TLISMENYRVGVDEGNDLDSIDFDALVQNLQDL  121 (818)
Q Consensus        49 ~~~i~~~~~-~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~------~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l  121 (818)
                      ++.+....+ +..+..+|.|+|.+||||||+|+.|++.|+.      .+++.|.+.+.+.........+.+...+.+..+
T Consensus       378 ~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~  457 (568)
T PRK05537        378 VAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFV  457 (568)
T ss_pred             HHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHH
Confidence            333333333 4456789999999999999999999999985      889999886554322111112222111111100


Q ss_pred             hcCCccccccchhhhhccccccccccCCccEEEEEecccch---hhhhcC----CC-EEEEEEcCHHHHHHHH
Q 003460          122 TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSL----LD-IRVAVVGGVHFSLISK  186 (818)
Q Consensus       122 ~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~----~D-~~I~Vda~~e~~l~Rr  186 (818)
                                         ...  ......++|++.+..+.   +..+.+    -. +.||++++.+.+.+|.
T Consensus       458 -------------------a~~--v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~  509 (568)
T PRK05537        458 -------------------ASE--ITKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRD  509 (568)
T ss_pred             -------------------HHH--HHhCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhc
Confidence                               000  11223577777665544   222222    23 4799999999887663

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=98.07  E-value=4.6e-06  Score=84.83  Aligned_cols=59  Identities=7%  Similarity=-0.026  Sum_probs=41.4

Q ss_pred             CCCEEEEEEcCHHHHHHHHHHhccCCC-c---CHHHHHHhhchhhhhccCCccccCcEEEECC
Q 003460          168 LLDIRVAVVGGVHFSLISKVQYDIGDS-C---SLDSLIDSIFPLFRKHIEPDLHHAQIRINNR  226 (818)
Q Consensus       168 ~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~---s~e~~~~~~~p~~~~~Iep~~~~ADiII~N~  226 (818)
                      .-|+.||++|+.++-+.|..+|.+.-. .   .-....+.+...|..+++-.-..-++.|+.+
T Consensus       126 ~PdllIyLd~~~e~~l~RI~~RgR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~  188 (216)
T COG1428         126 RPDLLIYLDASLETLLRRIAKRGRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGIDGD  188 (216)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHhCCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeeeccc
Confidence            569999999999998888888875443 1   1135666666777777766655666777554

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=98.07  E-value=1.4e-05  Score=84.92  Aligned_cols=134  Identities=16%  Similarity=0.227  Sum_probs=72.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN  138 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~  138 (818)
                      +|.++|++||||||+|+.|++.++     +.+++.|.+...+..+..    ..+.   .+...              ...
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~----~~e~---~~~~~--------------~~~   59 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKE----KYEE---FIRDS--------------TLY   59 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhH----HhHH---HHHHH--------------HHH
Confidence            488999999999999999999873     455666665332211100    0010   00000              000


Q ss_pred             cccccccccCCccEEEEEecccch---hhhh------cCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhh
Q 003460          139 RIGSKVIKGASSGVVIVDGTYALD---ARLR------SLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFR  209 (818)
Q Consensus       139 ~~~~~~~~~~~~~vVIvEG~~l~~---~~l~------~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~  209 (818)
                      .+. ..+  .....||+||.....   ..+.      ..-.+.||+++|.+.+++|...|...  .+ ++.+..   .+.
T Consensus        60 ~i~-~~l--~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~--~~-~~~i~~---l~~  130 (249)
T TIGR03574        60 LIK-TAL--KNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEK--IP-NEVIKD---MYE  130 (249)
T ss_pred             HHH-HHH--hCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCC--CC-HHHHHH---HHH
Confidence            000 011  123468888876543   1222      11236789999999999998877531  22 333333   333


Q ss_pred             hccCCcc----ccCcEEEECCC
Q 003460          210 KHIEPDL----HHAQIRINNRF  227 (818)
Q Consensus       210 ~~Iep~~----~~ADiII~N~~  227 (818)
                      +|-+|..    ..++++|+.+.
T Consensus       131 r~e~p~~~~~wd~~~~~vd~~~  152 (249)
T TIGR03574       131 KFDEPGTKYSWDLPDLTIDTTK  152 (249)
T ss_pred             hhCCCCCCCCccCceEEecCCC
Confidence            3333432    34888887653

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK12338 hypothetical protein; Provisional

Probab=98.06  E-value=1.1e-05  Score=87.92  Aligned_cols=38  Identities=24%  Similarity=0.351  Sum_probs=32.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV   98 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~   98 (818)
                      .|.+|+|+|+|||||||+|+.||+.+|+..+..+|+.+
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r   40 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIR   40 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHH
Confidence            57899999999999999999999999998775555433

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=98.06  E-value=2.4e-05  Score=78.52  Aligned_cols=37  Identities=19%  Similarity=0.356  Sum_probs=32.5

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK  553 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~  553 (818)
                      +..|.|.|++||||||+++.|+..++..+++.|....
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~   40 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIE   40 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHH
Confidence            3358889999999999999999999999999997543

>PRK14532 adenylate kinase; Provisional

Probab=98.05  E-value=2.4e-05  Score=79.40  Aligned_cols=115  Identities=18%  Similarity=0.228  Sum_probs=65.7

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHH-HhcCCceeccccccccccc
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDLETGAR  598 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~-L~~g~~v~~P~yD~~~~~r  598 (818)
                      |.+.|++||||||+|+.|++.+|+.++|+||..+.+-..    +   + +   +.+.+.. +..|+.+.--........+
T Consensus         3 i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~----~---~-~---~~~~~~~~~~~g~~~~~~~~~~~~~~~   71 (188)
T PRK14532          3 LILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIAS----G---S-E---LGQRVKGIMDRGELVSDEIVIALIEER   71 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHc----C---C-H---HHHHHHHHHHCCCccCHHHHHHHHHHH
Confidence            667999999999999999999999999999998753110    0   0 0   0111111 1123222100000000000


Q ss_pred             CCCcceeeecCCcEEEEEecccchH---h----hh---hcCCEEEEEEcChhHHHHHHHhcC
Q 003460          599 SGFKELEVSEDCGVIIFEGVYALHP---E----IR---KSLDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       599 ~~~~~~~~~~~~~vvIvEG~~~~~~---~----l~---~~~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                      .     .......-+|++|..--..   .    +.   ...|..|++++|.++.+.|...|.
T Consensus        72 ~-----~~~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~  128 (188)
T PRK14532         72 L-----PEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRF  128 (188)
T ss_pred             H-----hCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCc
Confidence            0     0011234578898654221   1    11   235789999999999888887763

>PRK12338 hypothetical protein; Provisional

Probab=98.05  E-value=8.6e-06  Score=88.86  Aligned_cols=39  Identities=23%  Similarity=0.474  Sum_probs=35.0

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      +|.+|+|+|+|||||||+|+.|+..+|...+..+|+.+.
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~   41 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIRE   41 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHH
Confidence            589999999999999999999999999888877777665

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=98.05  E-value=3.7e-05  Score=74.18  Aligned_cols=39  Identities=23%  Similarity=0.345  Sum_probs=36.0

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV   98 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~   98 (818)
                      +-+.+|.|.|++||||||++++|++.||+..++.|+|+.
T Consensus        10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp   48 (191)
T KOG3354|consen   10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHP   48 (191)
T ss_pred             CCceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCC
Confidence            335689999999999999999999999999999999976

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=98.04  E-value=5.4e-06  Score=100.15  Aligned_cols=125  Identities=14%  Similarity=0.133  Sum_probs=77.2

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhh--cccCCCcccccHHHHHHHHHHHhc---CCcee---
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK--DFKYDDFSSLDLSLLSKNISDIRN---GRRTK---  587 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~--~~~~d~p~t~D~~ll~~~L~~L~~---g~~v~---  587 (818)
                      +..+|.|.||+||||||+|+.|++.||..+++.|.+|+.-...  +.+.   +-.|.+.+.+.+..+.-   +..+.   
T Consensus       441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  517 (661)
T PRK11860        441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGV---ALDDEAAIAALARGLPVRFEGDRIWLGG  517 (661)
T ss_pred             CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCc---CCCCHHHHHHHHhcCCeeecCCeEEECC
Confidence            3558999999999999999999999999999999999974221  1111   11244445554443221   00011   


Q ss_pred             ---------------------cccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHH
Q 003460          588 ---------------------VPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISR  646 (818)
Q Consensus       588 ---------------------~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rr  646 (818)
                                           .|.++.....+.    .... ...=+|+||=-.+.-- .+..|++||++++.+.|-.||
T Consensus       518 ~~~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~q----r~~~-~~~~~v~eGRdigtvv-~p~a~~kifl~a~~~~Ra~Rr  591 (661)
T PRK11860        518 EDVTDAIRTEAAGMGASRVSALPAVRAALLALQ----RSFR-RLPGLVADGRDMGTVI-FPDAALKVFLTASAEARAERR  591 (661)
T ss_pred             eEchhhhCcHHHHHHHHHHhCCHHHHHHHHHHH----HHHh-hCCCEEEECCCCccEE-CCCCCeEEEEECChhHHHHHH
Confidence                                 111111110000    0001 1224899998877522 234789999999999999999


Q ss_pred             Hhc
Q 003460          647 VQR  649 (818)
Q Consensus       647 i~R  649 (818)
                      ...
T Consensus       592 ~~~  594 (661)
T PRK11860        592 YKQ  594 (661)
T ss_pred             HHH
Confidence            875

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=98.04  E-value=1.7e-05  Score=76.01  Aligned_cols=104  Identities=21%  Similarity=0.249  Sum_probs=74.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec------ccccCCCCCcccHHHHHHHHHhhhcCCccccccchhh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV------GVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ  135 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~------~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~  135 (818)
                      .+-|.|+|-+|+||||+|.+||+.+|...|.+.++.+      ++++...---+|-+.+...|..+..+..         
T Consensus         7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg---------   77 (176)
T KOG3347|consen    7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEGG---------   77 (176)
T ss_pred             CCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhcCC---------
Confidence            3558999999999999999999999999999988743      5555544456777788877775432211         


Q ss_pred             hhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccC
Q 003460          136 QKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIG  192 (818)
Q Consensus       136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~  192 (818)
                                     .+|=--|.-+|-   ...+|+++.+.+|...-..|.-.|...
T Consensus        78 ---------------~IVDyHgCd~Fp---erwfdlVvVLr~~~s~LY~RL~sRgY~  116 (176)
T KOG3347|consen   78 ---------------NIVDYHGCDFFP---ERWFDLVVVLRTPNSVLYDRLKSRGYS  116 (176)
T ss_pred             ---------------cEEeecccCccc---hhheeEEEEEecCchHHHHHHHHcCCC
Confidence                           111112333322   256899999999999998888877643

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.02  E-value=5.8e-06  Score=79.59  Aligned_cols=36  Identities=33%  Similarity=0.624  Sum_probs=33.0

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      +|.+.|++||||||+|+.|+..++..+++.|++...
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~   36 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRR   36 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHH
Confidence            578899999999999999999999999999998764

...

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=98.02  E-value=2.3e-05  Score=81.86  Aligned_cols=58  Identities=9%  Similarity=-0.025  Sum_probs=37.7

Q ss_pred             CCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHHHHhhchhhhhccCC-ccccCcEEEECC
Q 003460          169 LDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHIEP-DLHHAQIRINNR  226 (818)
Q Consensus       169 ~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~~~~~p~~~~~Iep-~~~~ADiII~N~  226 (818)
                      .|+.||++++++.+.+|...|..... ....++++.+...|.+++.+ ....+++++.|.
T Consensus       143 Pd~~i~l~~~~~~~~~Ri~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~  202 (219)
T cd02030         143 PHLVIYLDVPVPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDW  202 (219)
T ss_pred             CCEEEEEeCCHHHHHHHHHHcCCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeC
Confidence            59999999999999999877764322 22234445555666555433 344677777653

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PRK02496 adk adenylate kinase; Provisional

Probab=98.01  E-value=2.3e-05  Score=79.31  Aligned_cols=36  Identities=22%  Similarity=0.277  Sum_probs=33.0

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      .|.|.|++||||||+|+.|++.+|+.++++|+..+.
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~   38 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQ   38 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHH
Confidence            477899999999999999999999999999998765

>PTZ00088 adenylate kinase 1; Provisional

Probab=98.00  E-value=1.4e-05  Score=83.96  Aligned_cols=123  Identities=13%  Similarity=0.182  Sum_probs=71.7

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHH-HhcCCceecccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDL  593 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~-L~~g~~v~~P~yD~  593 (818)
                      ..|+-|.|.||+||||||+|+.|++.+|+.++|+|+.++.+....   ..     +   .+.+.. +.+|..+.-.....
T Consensus         4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~---t~-----l---g~~i~~~~~~G~lvpd~iv~~   72 (229)
T PTZ00088          4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAK---TT-----I---GKEIQKVVTSGNLVPDNLVIA   72 (229)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcC---Ch-----H---HHHHHHHHHcCCcCCHHHHHH
Confidence            456668899999999999999999999999999999998632111   00     0   111111 22232111111000


Q ss_pred             cccccCCCcceeeecCCcEEEEEecccch---Hhhh--hcCCEEEEEEcChhHHHHHHHhcCc
Q 003460          594 ETGARSGFKELEVSEDCGVIIFEGVYALH---PEIR--KSLDLWIAVVGGVHSHLISRVQRDK  651 (818)
Q Consensus       594 ~~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~l~--~~~D~~I~v~~~~d~rl~Rri~Rd~  651 (818)
                      ...++..  .. ......-+|++|.---.   ..+.  ...|..++++.+.++.+.|...|..
T Consensus        73 lv~~~l~--~~-~~~~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr~  132 (229)
T PTZ00088         73 IVKDEIA--KV-TDDCFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRRI  132 (229)
T ss_pred             HHHHHHH--hh-ccccCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCcC
Confidence            0001100  00 01123568999953221   1121  2467899999999999999887753

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=97.99  E-value=5.9e-07  Score=96.95  Aligned_cols=170  Identities=18%  Similarity=0.130  Sum_probs=85.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc--eecccccCCC-CCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDEGND-LDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI  140 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~--~~~~~~~~~~-~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~  140 (818)
                      +|+|+||+|||||++|..|++.++..+|+.|+  +|+++.-... |..-+.+.+..+|-+.....+ .+..-++......
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~-~~~v~~f~~~a~~   79 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSE-SYSAADFQTLALN   79 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhh-eEcHHHHHHHHHH
Confidence            48999999999999999999999999999999  5887654322 221111111222221111111 0111111111111


Q ss_pred             cccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhhccCCccccCc
Q 003460          141 GSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQ  220 (818)
Q Consensus       141 ~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~~Iep~~~~AD  220 (818)
                      ....+......+|++.|..++-..+..-....  -..+.+.  +..+.+.. .....+.       .+++..+-+...|.
T Consensus        80 ~i~~~~~~g~~pi~vGGTg~Yi~all~g~~~~--p~~~~~~--r~~l~~~~-~~~g~~~-------l~~~L~~~DP~~a~  147 (287)
T TIGR00174        80 AIADITARGKIPLLVGGTGLYLKALLEGLSPT--PSADKLI--REQLEILA-EEQGWDF-------LYNELKKVDPVAAA  147 (287)
T ss_pred             HHHHHHhCCCCEEEEcCcHHHHHHHHcCCCCC--CCCCHHH--HHHHHHHH-HHcCHHH-------HHHHHHhcCHHHHH
Confidence            11112233445789999999876554322211  0112222  22222111 1111111       22222223334455


Q ss_pred             EEEECCCCCChhhhhhcccCccc-CCcccccccc
Q 003460          221 IRINNRFVSSFREAIYKLKCRSE-APGACSISAF  253 (818)
Q Consensus       221 iII~N~~~~~~~~~~~~l~~~~~-~l~~~~~~~~  253 (818)
                      -|-.||       ++.++++.+. ..+|+..+.+
T Consensus       148 ~i~~nd-------~~Ri~RALEi~~~tG~~~s~~  174 (287)
T TIGR00174       148 KIHPND-------TRRVQRALEVFYATGKPPSEL  174 (287)
T ss_pred             hcCCcc-------HHHHHHHHHHHHHHCCChHHH
Confidence            566677       7888888877 5566665554

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PRK00279 adk adenylate kinase; Reviewed

Probab=97.99  E-value=2.4e-05  Score=81.31  Aligned_cols=36  Identities=25%  Similarity=0.361  Sum_probs=33.2

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      .|.|.|++||||||+|+.|++.+|+.++|++|..+.
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~   37 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRA   37 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHH
Confidence            377899999999999999999999999999998774

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=97.97  E-value=2.6e-05  Score=74.95  Aligned_cols=104  Identities=22%  Similarity=0.235  Sum_probs=60.9

Q ss_pred             eCCCCCcHHHHHHHHHHHhCCeEEeccceecc-----cccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccc
Q 003460           68 GGPSGSGKTSLAEKLASVIGCTLISMENYRVG-----VDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS  142 (818)
Q Consensus        68 ~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~-----~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~  142 (818)
                      .|.+||||||++..||+.||+..|+.|+++..     +..+-....-|..-..+.+.+....                  
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~------------------   62 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAAS------------------   62 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHH------------------
Confidence            49999999999999999999999999999872     1111111222222222222211100                  


Q ss_pred             cccccCCccEEEEEeccc--chhhhhcCC-CE-EEEEEcCHHHHHHHHHHhcc
Q 003460          143 KVIKGASSGVVIVDGTYA--LDARLRSLL-DI-RVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       143 ~~~~~~~~~vVIvEG~~l--~~~~l~~~~-D~-~I~Vda~~e~~l~Rri~Rd~  191 (818)
                       ... ....+||+...+=  ++..++.-+ ++ -||++.+.++.+.|...|..
T Consensus        63 -~~~-~~~~~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~g  113 (161)
T COG3265          63 -LAQ-KNKHVVIACSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKG  113 (161)
T ss_pred             -hhc-CCCceEEecHHHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhccc
Confidence             000 1111344433322  224555444 33 37999999999888888763

>PLN02840 tRNA dimethylallyltransferase

Probab=97.95  E-value=3.8e-06  Score=94.70  Aligned_cols=108  Identities=20%  Similarity=0.237  Sum_probs=62.5

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--ecccccCC-CCCcccHHHHHHHHHhhhcCCccccccchhh
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ  135 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~-~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~  135 (818)
                      .....+|+|+||+||||||+|..|++.++..+|+.|++  |+++.... .|..-+.....++|-++..-.+. +...+|.
T Consensus        18 ~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~-ySv~~F~   96 (421)
T PLN02840         18 TKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDD-YSVGAFF   96 (421)
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCc-eeHHHHH
Confidence            34457899999999999999999999999999999994  77665432 22222222222222222221110 1111221


Q ss_pred             hhccccccccccCCccEEEEEecccchhhhhc
Q 003460          136 QKNRIGSKVIKGASSGVVIVDGTYALDARLRS  167 (818)
Q Consensus       136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~  167 (818)
                      .........+.......|||.|.+++...+..
T Consensus        97 ~~A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~  128 (421)
T PLN02840         97 DDARRATQDILNRGRVPIVAGGTGLYLRWYIY  128 (421)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCccHHHHHHhc
Confidence            11111111222334457999999998865543

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=97.94  E-value=1.8e-05  Score=81.21  Aligned_cols=36  Identities=28%  Similarity=0.347  Sum_probs=30.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY   96 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~   96 (818)
                      .+.+|.|+|.+||||||+|+.|++.+|..++...|+
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~   37 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDY   37 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHH
Confidence            357899999999999999999999999865544443

>PLN02748 tRNA dimethylallyltransferase

Probab=97.94  E-value=3.2e-06  Score=96.77  Aligned_cols=108  Identities=25%  Similarity=0.239  Sum_probs=65.2

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc--eecccccCCC-CCcccHHHHHHHHHhhhcCCccccccchhh
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDEGND-LDSIDFDALVQNLQDLTEGKDTLIPMFDYQ  135 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~--~~~~~~~~~~-~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~  135 (818)
                      .+...+|+|+||+||||||||..||..+++.+|++|.  +|+++..... +..-+...+.++|-++..-.+ .+...+|.
T Consensus        19 ~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e-~ysv~~F~   97 (468)
T PLN02748         19 KGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSV-EFTAKDFR   97 (468)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCC-cCcHHHHH
Confidence            3455689999999999999999999999999999997  5998765432 322232333333333322211 11122222


Q ss_pred             hhccccccccccCCccEEEEEecccchhhhhc
Q 003460          136 QKNRIGSKVIKGASSGVVIVDGTYALDARLRS  167 (818)
Q Consensus       136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~  167 (818)
                      .........+.....-.|||.|..+|...+..
T Consensus        98 ~~A~~~I~~I~~rgk~PIlVGGTglYi~aLl~  129 (468)
T PLN02748         98 DHAVPLIEEILSRNGLPVIVGGTNYYIQALVS  129 (468)
T ss_pred             HHHHHHHHHHHhcCCCeEEEcChHHHHHHHHc
Confidence            21111111223344557999999998866553

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=97.94  E-value=1.6e-05  Score=77.85  Aligned_cols=36  Identities=33%  Similarity=0.560  Sum_probs=29.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceecc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVG   99 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~   99 (818)
                      +|.|+|.+||||||+|+.|+..+   |  +.+++.|.+...
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~   41 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHG   41 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHh
Confidence            47899999999999999999988   5  455777777653

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.94  E-value=2.7e-05  Score=78.20  Aligned_cols=25  Identities=32%  Similarity=0.529  Sum_probs=22.3

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCC
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGC  543 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~  543 (818)
                      +|+|.||+||||||+++.|+..++.
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~~~   27 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEEDPN   27 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccCcc
Confidence            6889999999999999999986653

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.93  E-value=5.3e-05  Score=77.87  Aligned_cols=28  Identities=29%  Similarity=0.411  Sum_probs=24.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      ....+|+|.|++||||||+++.|+..++
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            3457899999999999999999998765

>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]

Probab=97.93  E-value=5.3e-05  Score=75.31  Aligned_cols=160  Identities=16%  Similarity=0.222  Sum_probs=113.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceec----ccc--------c-----CCCCCcccHHHHHHHH
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV----GVD--------E-----GNDLDSIDFDALVQNL  118 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~----~~~--------~-----~~~~~~~d~~~l~~~L  118 (818)
                      +..+|+|+|.||+|-||+...+.+.++     +.-|..|.|++    .++        .     ...+++-|+..|.+.+
T Consensus         4 KhPiIavTGSSGAGTTTts~aFrKiF~~~~I~aa~iEGDsFHR~tRpeMd~~Irkar~~GrhisyFgpeANdf~~LE~~f   83 (289)
T COG3954           4 KHPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTF   83 (289)
T ss_pred             CCceEEEecCCCCCcccHHHHHHHHHHhcCccHhhhccccccccCchhHHHHHHHHHHcCCcceecCccccchHHHHHHH
Confidence            457899999999999999999887664     45688899866    111        1     1347888999999888


Q ss_pred             HhhhcCCccccccchh----------hhhccccccccccCCccEEEEEecccch----hhhhcCCCEEEEEEcCHHHHHH
Q 003460          119 QDLTEGKDTLIPMFDY----------QQKNRIGSKVIKGASSGVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSLI  184 (818)
Q Consensus       119 ~~l~~~~~i~~p~~d~----------~~~~~~~~~~~~~~~~~vVIvEG~~l~~----~~l~~~~D~~I~Vda~~e~~l~  184 (818)
                      ...-....-....|-+          ..+...+++... .+.+++.-||.....    -.+..++|+.|-+.-=.+..+.
T Consensus        84 ~eYg~~G~Gr~R~YlHt~dEAvp~nq~PGTFTpW~~lp-e~sDvLFYEGLHGgvVt~~~nvAqHvDlliGvVPivNLEWI  162 (289)
T COG3954          84 IEYGQSGKGRSRKYLHTYDEAVPWNQVPGTFTPWQPLP-EPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEWI  162 (289)
T ss_pred             HHhcccCCcchhhhhhchhhcCccCCCCCCCCCcccCC-CccceeeeeccccceecCcccHhhhhceeeeeeeEeeHHHH
Confidence            7664432222222222          222233343332 236789999986643    4677899999988877888888


Q ss_pred             HHHHhccCCC-cCHHHHHHhh---chhhhhccCCccccCcE
Q 003460          185 SKVQYDIGDS-CSLDSLIDSI---FPLFRKHIEPDLHHAQI  221 (818)
Q Consensus       185 Rri~Rd~~~~-~s~e~~~~~~---~p~~~~~Iep~~~~ADi  221 (818)
                      .++.||...| .+.+.+++.+   ++.|-.||-|.-.+.|+
T Consensus       163 QK~~RDt~~RGhSrEAVmDsivRsMdDYinyItPQFSrThI  203 (289)
T COG3954         163 QKLIRDTSERGHSREAVMDSVVRSMDDYINYITPQFSRTHI  203 (289)
T ss_pred             HHHHhcccccCccHHHHHHHHHHhhhhHHhhcCcccccccc
Confidence            8899998888 5777777754   78888888888777766

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=97.92  E-value=3e-05  Score=76.77  Aligned_cols=35  Identities=23%  Similarity=0.429  Sum_probs=31.8

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      |.|.|++||||||+|+.|+..++..+++.|+|+..
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~   35 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPA   35 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccCh
Confidence            46889999999999999999999999999999753

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=97.92  E-value=1.9e-05  Score=93.19  Aligned_cols=40  Identities=18%  Similarity=0.146  Sum_probs=35.6

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV   98 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~   98 (818)
                      +.+...|.+.|.+||||||+++.||+.||.+++|+|.+..
T Consensus         3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie   42 (542)
T PRK14021          3 PTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIE   42 (542)
T ss_pred             CCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHH
Confidence            3445679999999999999999999999999999999754

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=97.92  E-value=5.1e-05  Score=77.27  Aligned_cols=58  Identities=10%  Similarity=0.061  Sum_probs=37.5

Q ss_pred             CCCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHHHHhhchhhhhccCC-ccccCcEEEEC
Q 003460          168 LLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHIEP-DLHHAQIRINN  225 (818)
Q Consensus       168 ~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~~~~~p~~~~~Iep-~~~~ADiII~N  225 (818)
                      ..|+.||++++++++++|...|..... ....+.++.+...|..++.. .+..+.+++.|
T Consensus       124 ~pd~~i~l~~~~~~~~~Ri~~R~r~~e~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~vid  183 (193)
T cd01673         124 PPDLVIYLDASPETCLKRIKKRGRPEEQGIPLDYLEDLHEAYEKWFLPQMYEKAPVLIID  183 (193)
T ss_pred             CCCEEEEEeCCHHHHHHHHHhcCcHhhhcCCHHHHHHHHHHHHHHHhhccCCCCCEEEEE
Confidence            478999999999999999877764222 11234556667777776654 23345555443

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK14526 adenylate kinase; Provisional

Probab=97.92  E-value=4.3e-05  Score=79.32  Aligned_cols=116  Identities=16%  Similarity=0.129  Sum_probs=66.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhh-hcCCccccccchhhhhccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKNRIGS  142 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l-~~~~~i~~p~~d~~~~~~~~~  142 (818)
                      .|+|.|++||||||+|+.|++.+|..+++++++.+.......+       +.+.+..+ ..|.-+.-.........+.. 
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~-------~g~~i~~~~~~g~lvpd~~~~~lv~~~l~-   73 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTP-------LGKEIKQIVENGQLVPDSITIKIVEDKIN-   73 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCCh-------hhHHHHHHHHcCccCChHHHHHHHHHHHh-
Confidence            3789999999999999999999999999999986632222111       11112221 12221110111111111111 


Q ss_pred             cccccCCccEEEEEecc-cch--hhhhcCC--CEEEEEEcCHHHHHHHHHHhc
Q 003460          143 KVIKGASSGVVIVDGTY-ALD--ARLRSLL--DIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       143 ~~~~~~~~~vVIvEG~~-l~~--~~l~~~~--D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                         ......-+|+||.- -..  ..+...+  +..++++++.++.+.|...|.
T Consensus        74 ---~~~~~~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~  123 (211)
T PRK14526         74 ---TIKNNDNFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRR  123 (211)
T ss_pred             ---cccccCcEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCC
Confidence               11123457889882 221  2232221  356788999999999988875

>PRK13948 shikimate kinase; Provisional

Probab=97.91  E-value=3.5e-05  Score=78.08  Aligned_cols=40  Identities=15%  Similarity=0.334  Sum_probs=35.3

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      ..+..|.+.|.+||||||+++.|++.+|..++++|.+...
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~   47 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIER   47 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHH
Confidence            3567788999999999999999999999999999976543

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=97.90  E-value=2.3e-05  Score=76.63  Aligned_cols=111  Identities=22%  Similarity=0.155  Sum_probs=64.2

Q ss_pred             EeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhcccccccc
Q 003460           67 IGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRIGSKVI  145 (818)
Q Consensus        67 I~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~~~~~~~~  145 (818)
                      |.||+||||||+|+.|++.+|..+|+++++.+.......       .+.+.+.. +..|+.+.-.........+...   
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s-------~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~---   70 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDS-------ELGKQIQEYLDNGELVPDELVIELLKERLEQ---   70 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTS-------HHHHHHHHHHHTTSS--HHHHHHHHHHHHHS---
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhh-------HHHHHHHHHHHhhccchHHHHHHHHHHHHhh---
Confidence            689999999999999999999999999998664322211       11122222 3344433322222222222211   


Q ss_pred             ccCCccEEEEEecccch------hh----hhcCCCEEEEEEcCHHHHHHHHHH
Q 003460          146 KGASSGVVIVDGTYALD------AR----LRSLLDIRVAVVGGVHFSLISKVQ  188 (818)
Q Consensus       146 ~~~~~~vVIvEG~~l~~------~~----l~~~~D~~I~Vda~~e~~l~Rri~  188 (818)
                       .....-+|+||.=--.      ..    .....+.+|+++++.+....|...
T Consensus        71 -~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~  122 (151)
T PF00406_consen   71 -PPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ  122 (151)
T ss_dssp             -GGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred             -hcccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence             1334678999973322      11    223457999999999987777554

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=97.90  E-value=0.00014  Score=74.03  Aligned_cols=26  Identities=31%  Similarity=0.396  Sum_probs=24.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      .++|+|.|++||||||+++.|++.++
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~   28 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQ   28 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            36899999999999999999999884

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK13975 thymidylate kinase; Provisional

Probab=97.86  E-value=0.00015  Score=73.94  Aligned_cols=26  Identities=35%  Similarity=0.408  Sum_probs=24.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGC   88 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~   88 (818)
                      .+|+|.|+.||||||+++.|++.++.
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~~   28 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLNA   28 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            58999999999999999999999985

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=97.84  E-value=5.1e-05  Score=76.27  Aligned_cols=37  Identities=22%  Similarity=0.455  Sum_probs=30.9

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCc--ccccccccch
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCE--VVSLESYFKS  554 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~--vis~Ddfy~~  554 (818)
                      .+|.++|++||||||+|+.|++.++..  .++.|+|+..
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~   41 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA   41 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh
Confidence            378899999999999999999988644  4578888654

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK13808 adenylate kinase; Provisional

Probab=97.83  E-value=5.7e-05  Score=83.07  Aligned_cols=114  Identities=17%  Similarity=0.187  Sum_probs=65.8

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHH-HhcCCceeccccccccccc
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDLETGAR  598 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~-L~~g~~v~~P~yD~~~~~r  598 (818)
                      |.|.||+||||||+|..|++.+|+.+||+||..+.+-..    ..+.       ...+.. +..|..+.--.......++
T Consensus         3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~----~s~~-------g~~~~~~~~~G~lVPdeiv~~li~e~   71 (333)
T PRK13808          3 LILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAA----GTPV-------GLKAKDIMASGGLVPDEVVVGIISDR   71 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhc----CChh-------hHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            567999999999999999999999999999998752111    1110       001111 1222221100000000011


Q ss_pred             CCCcceeeecCCcEEEEEecccchHh---h---hh----cCCEEEEEEcChhHHHHHHHhc
Q 003460          599 SGFKELEVSEDCGVIIFEGVYALHPE---I---RK----SLDLWIAVVGGVHSHLISRVQR  649 (818)
Q Consensus       599 ~~~~~~~~~~~~~vvIvEG~~~~~~~---l---~~----~~D~~I~v~~~~d~rl~Rri~R  649 (818)
                      ..     ......-+|+||.---..+   +   ..    ..|+.|+++++.++.+.|...|
T Consensus        72 l~-----~~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R  127 (333)
T PRK13808         72 IE-----QPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETR  127 (333)
T ss_pred             Hh-----cccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcC
Confidence            10     0011234788985533211   1   11    4799999999999999998877

>PLN02674 adenylate kinase

Probab=97.82  E-value=0.00012  Score=77.36  Aligned_cols=121  Identities=11%  Similarity=-0.028  Sum_probs=70.3

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE  594 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~  594 (818)
                      ..+..|.|.||+||||||+|+.|++.+|+..||++|..+.+-...    .+      +..+.-.-+.+|+.+.-......
T Consensus        29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~----s~------~g~~i~~~~~~G~lvpd~iv~~l   98 (244)
T PLN02674         29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAK----TP------LGIKAKEAMDKGELVSDDLVVGI   98 (244)
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhcc----Ch------hhHHHHHHHHcCCccCHHHHHHH
Confidence            334567789999999999999999999999999999998632110    00      00111111223333211111110


Q ss_pred             ccccCCCcceeeecCCcEEEEEecccch---Hhhh-------hcCCEEEEEEcChhHHHHHHHhcC
Q 003460          595 TGARSGFKELEVSEDCGVIIFEGVYALH---PEIR-------KSLDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       595 ~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~l~-------~~~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                      ..++..     ......-+|++|.=--.   ..+.       -..|..|+++.+.+..+.|...|.
T Consensus        99 v~~~l~-----~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~  159 (244)
T PLN02674         99 IDEAMK-----KPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRW  159 (244)
T ss_pred             HHHHHh-----CcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccc
Confidence            011110     00112457888865432   1121       247899999999999999988774

>PLN02459 probable adenylate kinase

Probab=97.80  E-value=7.4e-05  Score=79.50  Aligned_cols=120  Identities=17%  Similarity=0.111  Sum_probs=70.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRI  140 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~~~  140 (818)
                      ++.|.|.|++||||||+|+.|++.+|+.+|+++++.+.......+       +-..+.. +..|.-+.-.........+.
T Consensus        29 ~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~-------lg~~i~~~~~~G~lVPdeiv~~ll~~~l  101 (261)
T PLN02459         29 NVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGP-------LGAQLKEIVNQGKLVPDEIIFSLLSKRL  101 (261)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccch-------hHHHHHHHHHcCCccCHHHHHHHHHHHH
Confidence            356888999999999999999999999999999987642222111       1112222 22232221111111111111


Q ss_pred             cccccccCCccEEEEEecccch---hhhhc--CCCEEEEEEcCHHHHHHHHHHhc
Q 003460          141 GSKVIKGASSGVVIVDGTYALD---ARLRS--LLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       141 ~~~~~~~~~~~vVIvEG~~l~~---~~l~~--~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                      ..  ........+|+||.=--.   ..+..  ..|.+|+++++.+..+.|...|.
T Consensus       102 ~~--~~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~  154 (261)
T PLN02459        102 EA--GEEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRR  154 (261)
T ss_pred             hc--ccccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccc
Confidence            00  000123568999873222   12222  36899999999999999988874

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.80  E-value=3.4e-05  Score=77.89  Aligned_cols=34  Identities=32%  Similarity=0.467  Sum_probs=28.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh---CCeEEeccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI---GCTLISMEN   95 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L---g~~vI~~D~   95 (818)
                      |++|.++|.+||||||+|+.||+.|   +..++|...
T Consensus         1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k   37 (261)
T COG4088           1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK   37 (261)
T ss_pred             CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence            4689999999999999999999988   355555544

>PRK13947 shikimate kinase; Provisional

Probab=97.80  E-value=0.00011  Score=73.20  Aligned_cols=34  Identities=18%  Similarity=0.356  Sum_probs=31.5

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK  553 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~  553 (818)
                      |.|.|++||||||+|+.|++.||..+++.|.+..
T Consensus         4 I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~   37 (171)
T PRK13947          4 IVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIE   37 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhh
Confidence            7789999999999999999999999999998754

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.80  E-value=0.00018  Score=72.16  Aligned_cols=157  Identities=14%  Similarity=0.121  Sum_probs=74.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeE-Eeccce--ecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhh-
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTL-ISMENY--RVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ-  136 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~v-I~~D~~--~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~-  136 (818)
                      ...++.|+||||+||||+.+.|-+..+..+ ||+---  +.+=.++-+.--.+.+.+.+.   +..++-+.+..|.... 
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~---i~~~~fLE~a~~~gnyY   79 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEEL---IERDEFLEWAEYHGNYY   79 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHH---HhcCCcEEEEEEcCCcc
Confidence            457899999999999999999977653221 222110  111111111111111222222   2222222222222111 


Q ss_pred             hccc--cccccccCCccEEEEEecccchhhhhcCC-C-EEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhhcc
Q 003460          137 KNRI--GSKVIKGASSGVVIVDGTYALDARLRSLL-D-IRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHI  212 (818)
Q Consensus       137 ~~~~--~~~~~~~~~~~vVIvEG~~l~~~~l~~~~-D-~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~~I  212 (818)
                      +...  ..........-++-+|..++..  +++.+ | ..||+..|.-..++||+.+...+  +.+.+.++....... +
T Consensus        80 GT~~~~ve~~~~~G~~vildId~qGa~q--vk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtd--s~e~I~~Rl~~a~~E-i  154 (191)
T COG0194          80 GTSREPVEQALAEGKDVILDIDVQGALQ--VKKKMPNAVSIFILPPSLEELERRLKGRGTD--SEEVIARRLENAKKE-I  154 (191)
T ss_pred             cCcHHHHHHHHhcCCeEEEEEehHHHHH--HHHhCCCeEEEEEcCCCHHHHHHHHHccCCC--CHHHHHHHHHHHHHH-H
Confidence            1111  1112222333344455555543  33333 4 56999999999999988876443  333333332222111 1


Q ss_pred             CCccccCcEEEECC
Q 003460          213 EPDLHHAQIRINNR  226 (818)
Q Consensus       213 ep~~~~ADiII~N~  226 (818)
                      + .....|.+|.|+
T Consensus       155 ~-~~~~fdyvivNd  167 (191)
T COG0194         155 S-HADEFDYVIVND  167 (191)
T ss_pred             H-HHHhCCEEEECc
Confidence            1 123478999998

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.79  E-value=3.8e-05  Score=82.56  Aligned_cols=127  Identities=17%  Similarity=0.123  Sum_probs=73.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--ecccccCCC-CCcccHHHHHHHHHhhhcC-Cccccccchhhh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGND-LDSIDFDALVQNLQDLTEG-KDTLIPMFDYQQ  136 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~~-~~~~d~~~l~~~L~~l~~~-~~i~~p~~d~~~  136 (818)
                      +-++|+|+|++|||||-||--||.+++..+|+.|.+  |++++-... ....+...+.++|.....- .+.....|  ..
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F--~~   83 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEF--ED   83 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHH--HH
Confidence            457999999999999999999999999999999995  887643211 1111111222232221111 11111111  11


Q ss_pred             hccccccccccCCccEEEEEecccchhhhhcC---------------------CC-EEEEEEcCHHHHHHHHHHh
Q 003460          137 KNRIGSKVIKGASSGVVIVDGTYALDARLRSL---------------------LD-IRVAVVGGVHFSLISKVQY  189 (818)
Q Consensus       137 ~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~---------------------~D-~~I~Vda~~e~~l~Rri~R  189 (818)
                      ........+.....-.+|+.|...+-..+..-                     +| +.+||+++..+-..|.-+|
T Consensus        84 ~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~R  158 (348)
T KOG1384|consen   84 DASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKR  158 (348)
T ss_pred             HHHHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHH
Confidence            11111112233334457778877766433322                     33 6789999998877776555

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=97.78  E-value=7.3e-05  Score=75.08  Aligned_cols=151  Identities=19%  Similarity=0.117  Sum_probs=74.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCC--eEEeccceecccccC--CCCCcc-------cHHHH-HHHHHhhhcCCccccc
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGC--TLISMENYRVGVDEG--NDLDSI-------DFDAL-VQNLQDLTEGKDTLIP  130 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~--~vI~~D~~~~~~~~~--~~~~~~-------d~~~l-~~~L~~l~~~~~i~~p  130 (818)
                      .+|.+.|+|.|||||+|+.|++.+..  ..++.|.|...+..+  .....+       +.... ...+..+..+      
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------   75 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAA------   75 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHH------
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHH------
Confidence            47999999999999999999999964  568899986632211  001111       00111 1111111000      


Q ss_pred             cchhhhhccccccccccCCccEEEEEecccch----hhhhc---CCC-EEEEEEcCHHHHHHHHHHhccCCCcCHHHHHH
Q 003460          131 MFDYQQKNRIGSKVIKGASSGVVIVDGTYALD----ARLRS---LLD-IRVAVVGGVHFSLISKVQYDIGDSCSLDSLID  202 (818)
Q Consensus       131 ~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~----~~l~~---~~D-~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~  202 (818)
                               +   ..-.....-||+|..+.-.    +.+++   -++ +.|-|.||.++..+|-..|--...+ .   .+
T Consensus        76 ---------i---aa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~~G-~---a~  139 (174)
T PF07931_consen   76 ---------I---AAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRPIG-L---AA  139 (174)
T ss_dssp             ---------H---HHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTT-H---HH
T ss_pred             ---------H---HHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcchH-H---HH
Confidence                     0   0001123357778766543    22322   233 5678899999877777777521112 1   11


Q ss_pred             hhchhhhhccCCccccCcEEEECCCCCChhhhhhcccC
Q 003460          203 SIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKC  240 (818)
Q Consensus       203 ~~~p~~~~~Iep~~~~ADiII~N~~~~~~~~~~~~l~~  240 (818)
                      .   +++. +.. -..-|+.|+.+-.+..+++.-+++.
T Consensus       140 ~---q~~~-Vh~-~~~YDleVDTs~~sp~ecA~~I~~~  172 (174)
T PF07931_consen  140 W---QAEH-VHE-GGRYDLEVDTSATSPEECAREILAR  172 (174)
T ss_dssp             H---HTTG-GGT-T---SEEEETTSS-HHHHHHHHHTT
T ss_pred             H---HHhh-ccc-CCCCCEEEECCCCCHHHHHHHHHHH
Confidence            1   1221 111 2357899998877777777666554

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=97.78  E-value=0.0001  Score=79.95  Aligned_cols=39  Identities=33%  Similarity=0.515  Sum_probs=35.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCe-EEeccceec
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCT-LISMENYRV   98 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~-vI~~D~~~~   98 (818)
                      +.|++|.|+|++||||||+|..||..||.. +|++|.+..
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re  129 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIRE  129 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHH
Confidence            467999999999999999999999999986 899999864

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=97.78  E-value=0.00011  Score=75.52  Aligned_cols=39  Identities=31%  Similarity=0.409  Sum_probs=32.9

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      .+.+|.|+|.+||||||+|+.|+..+|..++..-|+.+.
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~   40 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLRE   40 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHH
Confidence            467999999999999999999999999876666666554

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=97.77  E-value=9.9e-05  Score=73.48  Aligned_cols=125  Identities=21%  Similarity=0.177  Sum_probs=77.6

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccc
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL  593 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~  593 (818)
                      .+.|.||.|.|++||||-|.|.++++.+|...||++|..+.+....      ++--..+   .-..+++|.-+..-....
T Consensus         5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~------gse~g~~---I~~~i~~G~iVP~ei~~~   75 (195)
T KOG3079|consen    5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASA------GSERGAL---IKEIIKNGDLVPVEITLS   75 (195)
T ss_pred             ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccc------cChHHHH---HHHHHHcCCcCcHHHHHH
Confidence            3568899999999999999999999999999999999998643221      1111111   122334454432222111


Q ss_pred             cccccCCCcceeeecCCcEEEEEecccc-------hHhhhhcCCEEEEEEcChhHHHHHHHhcCcc
Q 003460          594 ETGARSGFKELEVSEDCGVIIFEGVYAL-------HPEIRKSLDLWIAVVGGVHSHLISRVQRDKS  652 (818)
Q Consensus       594 ~~~~r~~~~~~~~~~~~~vvIvEG~~~~-------~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~  652 (818)
                      ...+     .........-+++||.=--       +..+....++.+|++++.++.+.|.+.|+..
T Consensus        76 LL~~-----am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~  136 (195)
T KOG3079|consen   76 LLEE-----AMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQS  136 (195)
T ss_pred             HHHH-----HHHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhccc
Confidence            1100     0000111122777875421       1223335689999999999999999999854

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=97.77  E-value=3.3e-05  Score=76.42  Aligned_cols=129  Identities=16%  Similarity=0.115  Sum_probs=68.9

Q ss_pred             CCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCC---cccHHHHHHHHHhhhcCCccccccchhhhhcccccccccc
Q 003460           71 SGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLD---SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKG  147 (818)
Q Consensus        71 sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~---~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~~~~~  147 (818)
                      +||||||+++.||+.||++++|+|.+........-.+   ..+.+.+.+.                  ..... .... .
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g~si~~i~~~~G~~~fr~~------------------E~~~l-~~l~-~   60 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTGMSISEIFAEEGEEAFREL------------------ESEAL-RELL-K   60 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTSHHHHHHHHHHHHHHHHH------------------HHHHH-HHHH-C
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHHhCCcHHHHHHcCChHHHHHH------------------HHHHH-HHHh-c
Confidence            6999999999999999999999999854322110000   0011111110                  00000 0011 1


Q ss_pred             CCccEEEEE-ecccchhhhh---cCCCEEEEEEcCHHHHHHHHHHhccCCC-cCHH------HHHHhhchhhhhccCCcc
Q 003460          148 ASSGVVIVD-GTYALDARLR---SLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLD------SLIDSIFPLFRKHIEPDL  216 (818)
Q Consensus       148 ~~~~vVIvE-G~~l~~~~l~---~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e------~~~~~~~p~~~~~Iep~~  216 (818)
                      .. ..||.- |..+..+..+   ...-.+|||+++.+...+|...++.... ....      ....+..|.|++      
T Consensus        61 ~~-~~VIa~GGG~~~~~~~~~~L~~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~~Y~~------  133 (158)
T PF01202_consen   61 EN-NCVIACGGGIVLKEENRELLKENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREPLYEQ------  133 (158)
T ss_dssp             SS-SEEEEE-TTGGGSHHHHHHHHHHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHHHHHH------
T ss_pred             cC-cEEEeCCCCCcCcHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHHHHh------
Confidence            11 345554 4444444333   2346899999999998888776664111 1111      122234566665      


Q ss_pred             ccCcEEEECCC
Q 003460          217 HHAQIRINNRF  227 (818)
Q Consensus       217 ~~ADiII~N~~  227 (818)
                       .||++++.+.
T Consensus       134 -~a~~~v~~~~  143 (158)
T PF01202_consen  134 -AADIVVDTDG  143 (158)
T ss_dssp             -HSSEEEETSS
T ss_pred             -cCeEEEeCCC
Confidence             6899998774

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PRK14529 adenylate kinase; Provisional

Probab=97.76  E-value=9.1e-05  Score=77.38  Aligned_cols=116  Identities=14%  Similarity=0.066  Sum_probs=70.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRIGS  142 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~~~~~  142 (818)
                      .|.|.|++||||||+|+.|++.+|...+++.++.+.....+.+       +.+.+.. +..|.-+.-.........+.. 
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~-------lg~~i~~~i~~G~lvpdei~~~lv~~~l~-   73 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTE-------LGKKAKEYIDRGDLVPDDITIPMILETLK-   73 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCCh-------HHHHHHHHHhccCcchHHHHHHHHHHHHh-
Confidence            4888999999999999999999999999998887643322111       1112222 122322221111111111111 


Q ss_pred             cccccCCccEEEEEecccch---hhh-------hcCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460          143 KVIKGASSGVVIVDGTYALD---ARL-------RSLLDIRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       143 ~~~~~~~~~vVIvEG~~l~~---~~l-------~~~~D~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                         ... ..-+|+||.=--.   ..+       .-..|.+|+++++.++.+.|...|..
T Consensus        74 ---~~~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~  128 (223)
T PRK14529         74 ---QDG-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRL  128 (223)
T ss_pred             ---ccC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCcc
Confidence               111 4468999973222   111       12478999999999999998887753

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=97.74  E-value=0.00018  Score=72.56  Aligned_cols=36  Identities=25%  Similarity=0.388  Sum_probs=32.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV   98 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~   98 (818)
                      -+++|.|++||||||+++.|+..++...++.|+++.
T Consensus         4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~   39 (176)
T PRK09825          4 ESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHP   39 (176)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCC
Confidence            368999999999999999999999998999998754

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=97.73  E-value=9e-05  Score=75.00  Aligned_cols=165  Identities=18%  Similarity=0.140  Sum_probs=76.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhC----CeEEeccceec-ccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIG----CTLISMENYRV-GVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ  136 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg----~~vI~~D~~~~-~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~  136 (818)
                      +.+|.|+||+|||||||++.|.+.+.    .++-++-.--+ +-.++.+.--.+.+.+.+.+   ..++-+.+..++...
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~---~~~~fie~~~~~g~~   78 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMI---KAGEFIEYGEYDGNY   78 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHH---HTTHEEEEEEETTEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhh---ccccEEEEeeecchh
Confidence            45788999999999999999988764    23333332211 11111111111222222222   223223332232211


Q ss_pred             hccc---cccccccCCccEEEEEecccchhhhh--cCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhhc
Q 003460          137 KNRI---GSKVIKGASSGVVIVDGTYALDARLR--SLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKH  211 (818)
Q Consensus       137 ~~~~---~~~~~~~~~~~vVIvEG~~l~~~~l~--~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~~  211 (818)
                      +.-.   .....  ....++|++.-.-.-..+.  ...-+.|||..+....+++++.+...  .+.+.+.++. ...++.
T Consensus        79 YGt~~~~i~~~~--~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~--~~~~~i~~r~-~~~~~~  153 (183)
T PF00625_consen   79 YGTSKSAIDKVL--EEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGD--ESEEEIEERL-ERAEKE  153 (183)
T ss_dssp             EEEEHHHHHHHH--HTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTH--CHHHHHHHHH-HHHHHH
T ss_pred             hhhccchhhHhh--hcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhcccc--ccHHHHHHHH-HHHHHH
Confidence            1110   01111  2344566654432223333  33447899998887778877655321  1222333322 122221


Q ss_pred             cCCccccCcEEEECCCCCChhhhhhcc
Q 003460          212 IEPDLHHAQIRINNRFVSSFREAIYKL  238 (818)
Q Consensus       212 Iep~~~~ADiII~N~~~~~~~~~~~~l  238 (818)
                      +..... .|.+|.|+   ++++....|
T Consensus       154 ~~~~~~-fd~vi~n~---~le~~~~~l  176 (183)
T PF00625_consen  154 FEHYNE-FDYVIVND---DLEEAVKEL  176 (183)
T ss_dssp             HGGGGG-SSEEEECS---SHHHHHHHH
T ss_pred             HhHhhc-CCEEEECc---CHHHHHHHH
Confidence            211112 89999987   455554444

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=97.73  E-value=0.00016  Score=69.57  Aligned_cols=106  Identities=15%  Similarity=0.168  Sum_probs=66.5

Q ss_pred             eCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCc-----ccccHHHHHHHHHHHhcCCceecccccccccc
Q 003460          523 GGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDF-----SSLDLSLLSKNISDIRNGRRTKVPIFDLETGA  597 (818)
Q Consensus       523 sG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p-----~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~  597 (818)
                      .|.+||||||++..|++.||+..+..|+|+-+.+..++.-+.|     ..--++.+...+..+..+..            
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~------------   68 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNK------------   68 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCC------------
Confidence            4899999999999999999999999999999876655544443     22223444444333222111            


Q ss_pred             cCCCcceeeecCCcEEEEEeccc--chHhhhhcC-C-EEEEEEcChhHHHHHHHhcCccc
Q 003460          598 RSGFKELEVSEDCGVIIFEGVYA--LHPEIRKSL-D-LWIAVVGGVHSHLISRVQRDKSR  653 (818)
Q Consensus       598 r~~~~~~~~~~~~~vvIvEG~~~--~~~~l~~~~-D-~~I~v~~~~d~rl~Rri~Rd~~~  653 (818)
                                   .+||.-..+=  +...+|... + ..||++++.++-+.|...|...+
T Consensus        69 -------------~~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHF  115 (161)
T COG3265          69 -------------HVVIACSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHF  115 (161)
T ss_pred             -------------ceEEecHHHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCC
Confidence                         1222211111  113344444 2 46789999999999988886443

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.72  E-value=0.00011  Score=74.00  Aligned_cols=125  Identities=16%  Similarity=0.143  Sum_probs=61.3

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCc--ccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccc-
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCE--VVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET-  595 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~--vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~-  595 (818)
                      +|.|+|+|||||||+++.|+..++..  +.....++..  ....+-.+-...+.+.+.   .....+.-..+..+-... 
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~   77 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITR--PASAGGENHIALSTEEFD---HREDGGAFALSWQAHGLSY   77 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEccc--CCCCCCccccccCHHHHH---HHHHCCCEEEEEeecCccc
Confidence            68899999999999999999987532  1100111110  000000000011111111   222233222222221000 


Q ss_pred             cccCCCcceeeecCCcEEEEEecccchHhhhhcCC--EEEEEEcChhHHHHHHHhcC
Q 003460          596 GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLD--LWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       596 ~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D--~~I~v~~~~d~rl~Rri~Rd  650 (818)
                      +...  ...........+|++|.-...+.++..+.  ..||++++.+....|...|.
T Consensus        78 g~~~--~i~~~~~~g~~vv~~g~~~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~  132 (179)
T TIGR02322        78 GIPA--EIDQWLEAGDVVVVNGSRAVLPEARQRYPNLLVVNITASPDVLAQRLAARG  132 (179)
T ss_pred             cChH--HHHHHHhcCCEEEEECCHHHHHHHHHHCCCcEEEEEECCHHHHHHHHHHcC
Confidence            0000  00011123457888887655455544332  78899999999998888763

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.72  E-value=0.00018  Score=73.79  Aligned_cols=41  Identities=20%  Similarity=0.255  Sum_probs=32.6

Q ss_pred             cCCCCEEEeeeCCCCccHHHHHHHHHHHh-----CCcccccccccc
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFK  553 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~l-----g~~vis~Ddfy~  553 (818)
                      ...+|.+|+|+|++||||||+++.|+..+     +..+++.|++..
T Consensus        20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~   65 (198)
T PRK03846         20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH   65 (198)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh
Confidence            34678999999999999999999999976     245566666543

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=97.72  E-value=0.00012  Score=76.02  Aligned_cols=41  Identities=37%  Similarity=0.552  Sum_probs=35.9

Q ss_pred             hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-eEEeccceec
Q 003460           58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIGC-TLISMENYRV   98 (818)
Q Consensus        58 ~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~-~vI~~D~~~~   98 (818)
                      ++..|.+|.|.|+||.||||+|..||..||+ .+|++|.+..
T Consensus        85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IRE  126 (299)
T COG2074          85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIRE  126 (299)
T ss_pred             ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHH
Confidence            4467899999999999999999999999997 5788888643

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.72  E-value=9.1e-05  Score=73.20  Aligned_cols=104  Identities=20%  Similarity=0.304  Sum_probs=72.7

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCC---cccccHHHHHHHHHHHhcCCceecccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDD---FSSLDLSLLSKNISDIRNGRRTKVPIFDLET  595 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~---p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~  595 (818)
                      .|+|+|.+|.||||+|+.|+ .+|..++++-+|.+....-. .++.   ---.|.+.+...+..+..             
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~-~~de~r~s~~vD~d~~~~~le~~~~-------------   66 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYT-EYDELRKSVIVDVDKLRKRLEELLR-------------   66 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCee-ccCCccceEEeeHHHHHHHHHHHhc-------------
Confidence            68999999999999999999 79999999888876522110 1111   223577777777666321             


Q ss_pred             cccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccc
Q 003460          596 GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS  659 (818)
Q Consensus       596 ~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~  659 (818)
                                    ..-.|+||.++-   +.+.+|+.|.+.++++.-..|...|     |++.+
T Consensus        67 --------------~~~~Ivd~H~~h---l~~~~dlVvVLR~~p~~L~~RLk~R-----Gy~~e  108 (180)
T COG1936          67 --------------EGSGIVDSHLSH---LLPDCDLVVVLRADPEVLYERLKGR-----GYSEE  108 (180)
T ss_pred             --------------cCCeEeechhhh---cCCCCCEEEEEcCCHHHHHHHHHHc-----CCCHH
Confidence                          134577776652   3347899999999998877777654     66654

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=97.71  E-value=5.2e-05  Score=93.04  Aligned_cols=39  Identities=31%  Similarity=0.681  Sum_probs=36.7

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE  555 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~  555 (818)
                      .++|+|+||+||||||+|+.|+..|++.+++++.+|+.-
T Consensus        34 ~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~   72 (863)
T PRK12269         34 TVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF   72 (863)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence            369999999999999999999999999999999999973

>PRK00698 tmk thymidylate kinase; Validated

Probab=97.70  E-value=0.0003  Score=71.98  Aligned_cols=25  Identities=28%  Similarity=0.436  Sum_probs=23.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ..+|+|.|++||||||+++.|++.+
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l   27 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELL   27 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999999987

>PLN02842 nucleotide kinase

Probab=97.68  E-value=0.00015  Score=83.61  Aligned_cols=114  Identities=16%  Similarity=0.086  Sum_probs=64.5

Q ss_pred             EeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhh-hcCCccccccchhhhhcccccccc
Q 003460           67 IGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKNRIGSKVI  145 (818)
Q Consensus        67 I~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l-~~~~~i~~p~~d~~~~~~~~~~~~  145 (818)
                      |.|++||||||+|+.|++.+|..+|++++..+.....+.+       +-+.+..+ ..|+.+.-..+.....++....  
T Consensus         2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~-------iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~--   72 (505)
T PLN02842          2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTD-------IGKRAKEFMNSGRLVPDEIVIAMVTGRLSRE--   72 (505)
T ss_pred             eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCH-------HHHHHHHHHhCCCCCcHHHHHHHHHHHHhCc--
Confidence            7899999999999999999999999999976532221111       11122222 2232111111111111111110  


Q ss_pred             ccCCccEEEEEecccch---hhh---hcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          146 KGASSGVVIVDGTYALD---ARL---RSLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       146 ~~~~~~vVIvEG~~l~~---~~l---~~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                       .....-+|+||.---.   ..+   ....|++|+++++.+..+.|...|.
T Consensus        73 -~~~~~G~ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~  122 (505)
T PLN02842         73 -DAKEKGWLLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRR  122 (505)
T ss_pred             -cccCCcEEEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccc
Confidence             0012236669952111   122   2346999999999999999977764

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.68  E-value=0.00027  Score=72.65  Aligned_cols=27  Identities=26%  Similarity=0.502  Sum_probs=23.7

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      ...+|+|.|||||||||+++.|+..++
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            446799999999999999999998764

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.67  E-value=2.4e-05  Score=79.00  Aligned_cols=117  Identities=21%  Similarity=0.214  Sum_probs=68.8

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHH-HhcCCceecccccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDLETGA  597 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~-L~~g~~v~~P~yD~~~~~  597 (818)
                      .|.|.|+|||||||+|+.|++.++.+.+|.||+++......       +    .+.+.... +.+|+-+.--.++.....
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~-------t----~lg~~~k~~i~~g~lv~d~i~~~~v~~   70 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAER-------T----ELGEEIKKYIDKGELVPDEIVNGLVKE   70 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccC-------C----hHHHHHHHHHHcCCccchHHHHHHHHH
Confidence            36789999999999999999999999999999998632111       1    01111111 233332222222222222


Q ss_pred             cCCCcceeeecCCcEEEEEecccch-------Hhhh---hcCCEEEEEEcChhHHHHHHHhcCc
Q 003460          598 RSGFKELEVSEDCGVIIFEGVYALH-------PEIR---KSLDLWIAVVGGVHSHLISRVQRDK  651 (818)
Q Consensus       598 r~~~~~~~~~~~~~vvIvEG~~~~~-------~~l~---~~~D~~I~v~~~~d~rl~Rri~Rd~  651 (818)
                      |...     .....-+|++|.=-.-       ..+.   ...|..+.++.+.+.-+.|...|..
T Consensus        71 rl~~-----~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~  129 (178)
T COG0563          71 RLDE-----ADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV  129 (178)
T ss_pred             HHHh-----hcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc
Confidence            2210     0111267888765432       1121   2468888888888888888887754

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.65  E-value=0.00028  Score=76.57  Aligned_cols=31  Identities=26%  Similarity=0.369  Sum_probs=25.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEE
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLI   91 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI   91 (818)
                      ..+.+|+|+|++||||||+++.|+. +|..++
T Consensus         4 ~~~~~i~i~G~~GsGKtt~~~~l~~-~g~~~~   34 (288)
T PRK05416          4 APMRLVIVTGLSGAGKSVALRALED-LGYYCV   34 (288)
T ss_pred             CCceEEEEECCCCCcHHHHHHHHHH-cCCeEE
Confidence            3456899999999999999999964 577665

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=97.64  E-value=0.00024  Score=76.49  Aligned_cols=111  Identities=15%  Similarity=0.129  Sum_probs=55.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ  136 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~  136 (818)
                      |.+|.|+|.+||||||+|+.|++.+.     +.+++-|++......  ..++.........+...               
T Consensus         1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~--y~~~~~Ek~~R~~l~s~---------------   63 (270)
T PF08433_consen    1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRND--YADSKKEKEARGSLKSA---------------   63 (270)
T ss_dssp             E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSS--S--GGGHHHHHHHHHHH---------------
T ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhh--hhchhhhHHHHHHHHHH---------------
Confidence            56899999999999999999999762     455665554411111  11222222222222210               


Q ss_pred             hccccccccccCCccEEEEEecccchh---------hhhcCCCEEEEEEcCHHHHHHHHHHhccCCCc
Q 003460          137 KNRIGSKVIKGASSGVVIVDGTYALDA---------RLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC  195 (818)
Q Consensus       137 ~~~~~~~~~~~~~~~vVIvEG~~l~~~---------~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~  195 (818)
                         +. +  ......+||+|+.+-+..         .-...--..||++++.+.++.|-..|....+.
T Consensus        64 ---v~-r--~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~  125 (270)
T PF08433_consen   64 ---VE-R--ALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERY  125 (270)
T ss_dssp             ---HH-H--HHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S
T ss_pred             ---HH-H--hhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCC
Confidence               00 0  012246999999985541         11122237799999999999999998755443

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.64  E-value=9e-05  Score=75.24  Aligned_cols=126  Identities=14%  Similarity=0.038  Sum_probs=61.4

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR  598 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r  598 (818)
                      +|+|.||+||||||+++.|+..++..++..|.+......... .+.. .+..   .+....+..+.-...-.++-..+. 
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~---~~~~~~~~~~~~~~~~~~~g~~yg-   77 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGS-ENHI-ALSE---QEFFTRAGQNLFALSWHANGLYYG-   77 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhH-Hhhe-eEcH---HHHHHHHHCCchhhHHHHhCCccC-
Confidence            688999999999999999998777555444444332110000 0000 0111   111222222211111111100000 


Q ss_pred             CCCcceeeecCCcEEEEEecccchHhhhhcC---CEEEEEEcChhHHHHHHHhcC
Q 003460          599 SGFKELEVSEDCGVIIFEGVYALHPEIRKSL---DLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       599 ~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~---D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                      .+............||+.|--.....++..+   -..||++++.+....|...|+
T Consensus        78 ~~~~~~~~l~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~  132 (186)
T PRK10078         78 VGIEIDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQVSPEILRQRLENRG  132 (186)
T ss_pred             CcHHHHHHHhCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhC
Confidence            0000000112234566777765544444443   256889999999888887764

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.63  E-value=0.00021  Score=75.39  Aligned_cols=122  Identities=19%  Similarity=0.317  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceecccccCCCCCcccHHHHHHHHHhhh
Q 003460           48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLT  122 (818)
Q Consensus        48 l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~  122 (818)
                      ....+..+.++..+..+|||+|++|+|||||...|...+   |  +.|+..|.=.. ...+.-.  -|.-.+.+    +.
T Consensus        15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp-~tGGAlL--GDRiRM~~----~~   87 (266)
T PF03308_consen   15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSP-FTGGALL--GDRIRMQE----LS   87 (266)
T ss_dssp             HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGG-CC---SS----GGGCHH----HH
T ss_pred             HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCC-CCCCccc--ccHHHhcC----cC
Confidence            344455555666678999999999999999999998876   3  56777776321 0000000  01111111    11


Q ss_pred             cCCcccccc---------chhhhhccccccccccCCccEEEEEecccch--hhhhcCCCEEEEEEcC
Q 003460          123 EGKDTLIPM---------FDYQQKNRIGSKVIKGASSGVVIVDGTYALD--ARLRSLLDIRVAVVGG  178 (818)
Q Consensus       123 ~~~~i~~p~---------~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~--~~l~~~~D~~I~Vda~  178 (818)
                      ....+++..         ....+.+  ..........++||+|-..+.+  ..+.+.+|..++|-.|
T Consensus        88 ~d~~vfIRS~atRG~lGGls~~t~~--~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~P  152 (266)
T PF03308_consen   88 RDPGVFIRSMATRGSLGGLSRATRD--AVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVP  152 (266)
T ss_dssp             TSTTEEEEEE---SSHHHHHHHHHH--HHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEES
T ss_pred             CCCCEEEeecCcCCCCCCccHhHHH--HHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecC
Confidence            111222211         0011111  1123344567899999888887  4677999999999887

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=97.61  E-value=9.3e-05  Score=80.73  Aligned_cols=37  Identities=24%  Similarity=0.212  Sum_probs=33.1

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHh-CCcccccccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFK  553 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~l-g~~vis~Ddfy~  553 (818)
                      +.+|.+.|++||||||+|+.|++.+ +..+++.|++..
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~   39 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQ   39 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHH
Confidence            4578889999999999999999999 899999998754

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=97.61  E-value=6.5e-05  Score=72.52  Aligned_cols=49  Identities=16%  Similarity=0.352  Sum_probs=41.8

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCC
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYD  563 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d  563 (818)
                      .-+.+|-|.|++||||||+++.|.+.||+..+..|||+-+.+...+..+
T Consensus        10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~G   58 (191)
T KOG3354|consen   10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQG   58 (191)
T ss_pred             CCceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcC
Confidence            3466888999999999999999999999999999999998765544433

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=97.61  E-value=0.00031  Score=73.39  Aligned_cols=56  Identities=11%  Similarity=0.025  Sum_probs=36.8

Q ss_pred             CCEEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcchhhhhccc-cCCcccEEE
Q 003460          629 LDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEP-HLVHAHLKI  686 (818)
Q Consensus       629 ~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p-~~~~ADivI  686 (818)
                      .|+.||++++.+..+.|...|....  .......|+..+...|.++..+ +...+++++
T Consensus       143 Pd~~i~l~~~~~~~~~Ri~~R~~~~--e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~  199 (219)
T cd02030         143 PHLVIYLDVPVPEVQKRIKKRGDPH--EMKVTSAYLQDIENAYKKTFLPEISEHSEVLQ  199 (219)
T ss_pred             CCEEEEEeCCHHHHHHHHHHcCCch--hhcccHHHHHHHHHHHHHHHHHhhccCCCEEE
Confidence            5899999999999999877664211  1111146777777888777654 334566654

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>smart00072 GuKc Guanylate kinase homologues

Probab=97.61  E-value=0.00038  Score=70.58  Aligned_cols=157  Identities=14%  Similarity=0.098  Sum_probs=72.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh----CCeEEeccceec-ccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI----GCTLISMENYRV-GVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ  136 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L----g~~vI~~D~~~~-~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~  136 (818)
                      +.+|.|.|||||||+|+++.|.+..    +..+.++-.-.+ +-.++.+..-...+.+.+.   +..|.-+.+..+....
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~---i~~g~fve~~~~~g~~   78 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDD---IKSGLFLEWGEYSGNY   78 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHH---HHcCCeEEEEEEcCcC
Confidence            3579999999999999999998764    222223222222 1111111111112222222   2223222222222111


Q ss_pred             h-ccccccccccCCccEEEEEecccchhhhhc-CCC-EEEEEEcCHHHHHHHHHH-hccCCCcCHHHHHHhhchhhhhcc
Q 003460          137 K-NRIGSKVIKGASSGVVIVDGTYALDARLRS-LLD-IRVAVVGGVHFSLISKVQ-YDIGDSCSLDSLIDSIFPLFRKHI  212 (818)
Q Consensus       137 ~-~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~-~~D-~~I~Vda~~e~~l~Rri~-Rd~~~~~s~e~~~~~~~p~~~~~I  212 (818)
                      + .....-........++|+++..-....+.. ..+ +.|||..+....+++|+. |..   .+.+.+.++....... .
T Consensus        79 YGt~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~---~~~~~i~~rl~~a~~~-~  154 (184)
T smart00072       79 YGTSKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGT---ETAERIQKRLAAAQKE-A  154 (184)
T ss_pred             cccCHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHH-H
Confidence            1 110000001123567888877544444443 233 889998665555555544 421   2333333332211111 1


Q ss_pred             CCccccCcEEEECC
Q 003460          213 EPDLHHAQIRINNR  226 (818)
Q Consensus       213 ep~~~~ADiII~N~  226 (818)
                      . ..+..|.+|.|+
T Consensus       155 ~-~~~~fd~~I~n~  167 (184)
T smart00072      155 Q-EYHLFDYVIVND  167 (184)
T ss_pred             h-hhccCCEEEECc
Confidence            1 125689999998

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=97.60  E-value=0.00054  Score=69.35  Aligned_cols=30  Identities=33%  Similarity=0.515  Sum_probs=25.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHh---CCeEEe
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVI---GCTLIS   92 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~L---g~~vI~   92 (818)
                      ++|+|.|+.||||||+++.|++.+   |..++.
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~   33 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVL   33 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            379999999999999999999988   544443

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=97.60  E-value=0.00014  Score=73.51  Aligned_cols=158  Identities=20%  Similarity=0.183  Sum_probs=71.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC----CCCcccHHHH-HHHHHhhhcCCc----ccccc---
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN----DLDSIDFDAL-VQNLQDLTEGKD----TLIPM---  131 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~----~~~~~d~~~l-~~~L~~l~~~~~----i~~p~---  131 (818)
                      ||.|+|..|||++++|+.||+.||+.+++-+-+.....+.+    ..+.++-... ...+..+..+..    ...+.   
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPYYDREIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDDK   80 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--EE-HHHHHHCT------------SS-HHH--HH---HHS--------------H
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCccCCHHHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHHH
Confidence            69999999999999999999999999999855433222211    1222332222 122222211100    01111   


Q ss_pred             chhhhhccccccccccCCccEEEEEecccchhhhhcC-CCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHh-------
Q 003460          132 FDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSL-LDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDS-------  203 (818)
Q Consensus       132 ~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~-~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~-------  203 (818)
                      +.......+    .......-+|+.|..+.. -+++. -.+.|||.+|.+.|++|.+.|...........+..       
T Consensus        81 ~~~~~~~~i----~~la~~~~~Vi~GR~a~~-il~~~~~~l~V~i~A~~~~Rv~ri~~~~~~s~~~A~~~i~~~D~~R~~  155 (179)
T PF13189_consen   81 IFRAQSEII----RELAAKGNCVIVGRCANY-ILRDIPNVLHVFIYAPLEFRVERIMEREGISEEEAEKLIKKEDKRRRA  155 (179)
T ss_dssp             HHHHHHHHH----HHHHH---EEEESTTHHH-HTTT-TTEEEEEEEE-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----HHHhccCCEEEEecCHhh-hhCCCCCeEEEEEECCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            111111111    111112246777766643 12222 13899999999999999999974443233333321       


Q ss_pred             hchhhhhccCCccccCcEEEECC
Q 003460          204 IFPLFRKHIEPDLHHAQIRINNR  226 (818)
Q Consensus       204 ~~p~~~~~Iep~~~~ADiII~N~  226 (818)
                      +...+-..-......-|++|+.+
T Consensus       156 ~~~~~~~~~~~d~~~YDLvint~  178 (179)
T PF13189_consen  156 YYKYYTGIDWGDPSNYDLVINTS  178 (179)
T ss_dssp             HHHHH-SS-TTBGGG-SEEEEES
T ss_pred             HHHHHhCCCCCCchhceEEEeCc
Confidence            11222121245567778988765

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=97.60  E-value=0.00033  Score=69.72  Aligned_cols=30  Identities=27%  Similarity=0.416  Sum_probs=27.9

Q ss_pred             eCCCCCcHHHHHHHHHHHhCCeEEecccee
Q 003460           68 GGPSGSGKTSLAEKLASVIGCTLISMENYR   97 (818)
Q Consensus        68 ~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~   97 (818)
                      .|+|||||||+++.|++.+|...++.|.++
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~   30 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLH   30 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccCC
Confidence            599999999999999999999999999864

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.60  E-value=0.00034  Score=74.75  Aligned_cols=122  Identities=20%  Similarity=0.279  Sum_probs=70.2

Q ss_pred             HHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceecccccCCCCCcccHHHHHHHHHhhhcC
Q 003460           50 KSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEG  124 (818)
Q Consensus        50 ~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~  124 (818)
                      ..+..+.....+..+|||||++|+||||+...|...|   |  +.||..|.=.. ...+.-.  -|.-.+.+    +...
T Consensus        39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp-~TGGsiL--GDRiRM~~----~~~~  111 (323)
T COG1703          39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP-FTGGSIL--GDRIRMQR----LAVD  111 (323)
T ss_pred             HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCC-CCCcccc--ccHhhHHh----hccC
Confidence            3344445566778899999999999999999998877   3  56777776311 0000000  01111111    1111


Q ss_pred             Ccccc-ccchh----hhhc--cccccccccCCccEEEEEecccch--hhhhcCCCEEEEEEcC
Q 003460          125 KDTLI-PMFDY----QQKN--RIGSKVIKGASSGVVIVDGTYALD--ARLRSLLDIRVAVVGG  178 (818)
Q Consensus       125 ~~i~~-p~~d~----~~~~--~~~~~~~~~~~~~vVIvEG~~l~~--~~l~~~~D~~I~Vda~  178 (818)
                      ..+++ |.-+.    ....  +.....+.....++||||-..+.+  ..+.+.+|..++|..|
T Consensus       112 ~~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~p  174 (323)
T COG1703         112 PGVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIP  174 (323)
T ss_pred             CCeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecC
Confidence            11211 11011    0111  111123455678899999988887  5677999999999877

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=97.59  E-value=0.00012  Score=75.28  Aligned_cols=42  Identities=29%  Similarity=0.425  Sum_probs=32.8

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHh---CCeEEeccceeccc
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVI---GCTLISMENYRVGV  100 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~L---g~~vI~~D~~~~~~  100 (818)
                      ...|.+|.+.|++||||||++..+...+   ++.+|+.|.|...+
T Consensus        12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~   56 (199)
T PF06414_consen   12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH   56 (199)
T ss_dssp             -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred             ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence            4678999999999999999999999986   58889999986543

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=97.58  E-value=9.9e-05  Score=73.47  Aligned_cols=35  Identities=14%  Similarity=0.323  Sum_probs=31.5

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      |.+.|+.||||||+.+.||+.|+...+++|...-.
T Consensus         5 IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~   39 (172)
T COG0703           5 IVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEK   39 (172)
T ss_pred             EEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHH
Confidence            55689999999999999999999999999988654

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=97.56  E-value=0.00048  Score=69.48  Aligned_cols=36  Identities=22%  Similarity=0.332  Sum_probs=32.8

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      +++|.|++||||||+++.|+..++...++.|+++..
T Consensus         5 ~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~   40 (176)
T PRK09825          5 SYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPA   40 (176)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCH
Confidence            688999999999999999999999888999988764

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=97.55  E-value=0.00026  Score=72.06  Aligned_cols=48  Identities=15%  Similarity=0.117  Sum_probs=34.0

Q ss_pred             cCCEEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcchhhhhccc
Q 003460          628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEP  677 (818)
Q Consensus       628 ~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p  677 (818)
                      ..|+.||++++.++++.|...|....  ......+|...+...|..++..
T Consensus       124 ~pd~~i~l~~~~~~~~~Ri~~R~r~~--e~~~~~~~~~~l~~~y~~~~~~  171 (193)
T cd01673         124 PPDLVIYLDASPETCLKRIKKRGRPE--EQGIPLDYLEDLHEAYEKWFLP  171 (193)
T ss_pred             CCCEEEEEeCCHHHHHHHHHhcCcHh--hhcCCHHHHHHHHHHHHHHHhh
Confidence            47899999999999998876664211  1111246777888888888765

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=97.55  E-value=0.00032  Score=84.63  Aligned_cols=107  Identities=21%  Similarity=0.247  Sum_probs=64.8

Q ss_pred             hcCCcEEEEEeCCCCCcHHHHHHHHHHHh-----CCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccc
Q 003460           58 KKGGIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMF  132 (818)
Q Consensus        58 ~~~~~~iIgI~G~sGSGKSTlA~~La~~L-----g~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~  132 (818)
                      ...++.+|.++|.+||||||+|+.|++.|     ++.+++.|.++..+....   .+..+.-...+..+..         
T Consensus       456 ~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~---~~~~~~r~~~~~~l~~---------  523 (632)
T PRK05506        456 KGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDL---GFSDADRVENIRRVAE---------  523 (632)
T ss_pred             hCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCC---CCCHHHHHHHHHHHHH---------
Confidence            34458999999999999999999999987     357899999987654321   1221111111111100         


Q ss_pred             hhhhhccccccccccCCccEEEEEecccch---hhhhcCC---C-EEEEEEcCHHHHHHH
Q 003460          133 DYQQKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSLL---D-IRVAVVGGVHFSLIS  185 (818)
Q Consensus       133 d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~~---D-~~I~Vda~~e~~l~R  185 (818)
                             .  .........+||++......   ..++.++   . ..+|++++.+.+.+|
T Consensus       524 -------~--a~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R  574 (632)
T PRK05506        524 -------V--ARLMADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEAR  574 (632)
T ss_pred             -------H--HHHHHhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhh
Confidence                   0  00001223467777765543   3333332   3 679999999988776

>PLN02459 probable adenylate kinase

Probab=97.55  E-value=0.00035  Score=74.42  Aligned_cols=122  Identities=15%  Similarity=0.084  Sum_probs=69.5

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET  595 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~  595 (818)
                      +++.|.|.||+||||||+|+.|++.+|...+|+++..+.+-...    .+      +..+.=.-+.+|+-+.--......
T Consensus        28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~----t~------lg~~i~~~~~~G~lVPdeiv~~ll   97 (261)
T PLN02459         28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSS----GP------LGAQLKEIVNQGKLVPDEIIFSLL   97 (261)
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhcc----ch------hHHHHHHHHHcCCccCHHHHHHHH
Confidence            44567778999999999999999999999999999997631110    00      001111112223222111100000


Q ss_pred             cccCCCcceeeecCCcEEEEEecccchH---hhhh--cCCEEEEEEcChhHHHHHHHhcC
Q 003460          596 GARSGFKELEVSEDCGVIIFEGVYALHP---EIRK--SLDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       596 ~~r~~~~~~~~~~~~~vvIvEG~~~~~~---~l~~--~~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                      .++..  .. ......-+|++|.=--..   .+..  ..|..|+++.+.++-+.|...|.
T Consensus        98 ~~~l~--~~-~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~  154 (261)
T PLN02459         98 SKRLE--AG-EEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRR  154 (261)
T ss_pred             HHHHh--cc-cccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccc
Confidence            00000  00 001235578888654321   1222  36899999999999999988775

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.55  E-value=0.00019  Score=70.78  Aligned_cols=38  Identities=26%  Similarity=0.379  Sum_probs=29.9

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFK  553 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddfy~  553 (818)
                      ++.+|-|+|.+||||||+|+.|...|   |  +.+|+.|.+-.
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~   43 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH   43 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence            47899999999999999999999988   3  44666665543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=97.54  E-value=9.9e-05  Score=81.65  Aligned_cols=35  Identities=20%  Similarity=0.362  Sum_probs=30.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhC------CeEEeccceec
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIG------CTLISMENYRV   98 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg------~~vI~~D~~~~   98 (818)
                      ++.++|++||||||+++.|+..|+      +.+++.|+++.
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~   41 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP   41 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence            367999999999999999998774      45899999985

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>COG0645 Predicted kinase [General function prediction only]

Probab=97.50  E-value=0.00067  Score=67.01  Aligned_cols=111  Identities=20%  Similarity=0.150  Sum_probs=70.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceeccccc-----CCCCCcccHHHHHHHHHhhhcCCccccccchhhhh
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE-----GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK  137 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~-----~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~  137 (818)
                      .++.+.|.+||||||+|+.|++.+|+..|.+|.+.+.+-.     +...+.+....-...              |+.-..
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~v--------------y~~l~~   67 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAV--------------YDELLG   67 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHH--------------HHHHHH
Confidence            4678999999999999999999999999999998764433     222222222211110              110000


Q ss_pred             ccccccccccCCccEEEEEecccch---hhhhcCCC------EEEEEEcCHHHHHHHHHHhcc
Q 003460          138 NRIGSKVIKGASSGVVIVDGTYALD---ARLRSLLD------IRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       138 ~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~~D------~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                          ..........-||+|+.+.-.   ...+.+++      +.|.+.++.++...|...|..
T Consensus        68 ----~A~l~l~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~  126 (170)
T COG0645          68 ----RAELLLSSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG  126 (170)
T ss_pred             ----HHHHHHhCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence                011112234468999998876   22222222      347889999999999988875

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=97.50  E-value=0.00043  Score=80.87  Aligned_cols=95  Identities=12%  Similarity=0.084  Sum_probs=64.4

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHH-hhhcCCccccccchhhhh
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQ-DLTEGKDTLIPMFDYQQK  137 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~-~l~~~~~i~~p~~d~~~~  137 (818)
                      ...+.+|.+.|.+||||||+|+.++...|+.+|+.|.+..            ...+..... .|..              
T Consensus       366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------~~~~~~~a~~~L~~--------------  419 (526)
T TIGR01663       366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------TQNCLTACERALDQ--------------  419 (526)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------HHHHHHHHHHHHhC--------------
Confidence            3567899999999999999999999988999999998621            111111111 1111              


Q ss_pred             ccccccccccCCccEEEEEecccchh---hhhcC-----CC-EEEEEEcCHHHHHHHHHHhcc
Q 003460          138 NRIGSKVIKGASSGVVIVDGTYALDA---RLRSL-----LD-IRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       138 ~~~~~~~~~~~~~~vVIvEG~~l~~~---~l~~~-----~D-~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                                  ..-||+|..++-..   .+..+     +. ..+|+++|.+++..|...|..
T Consensus       420 ------------G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~  470 (526)
T TIGR01663       420 ------------GKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL  470 (526)
T ss_pred             ------------CCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence                        23467788877642   11111     12 347889999999888888865

Note that the EC number for the kinase function is: 2.7.1.78

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=97.49  E-value=0.00043  Score=82.05  Aligned_cols=62  Identities=15%  Similarity=0.152  Sum_probs=47.0

Q ss_pred             cccCCCCcchhhhhHHHHHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCC------cccccccc
Q 003460          487 LVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGC------EVVSLESY  551 (818)
Q Consensus       487 ~~~~~~~~~~~e~~~~~~~~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~------~vis~Ddf  551 (818)
                      ....|+++..-|.....   .+....+.+++.+|.|+|.+||||||+|+.|+..++.      .+++.|..
T Consensus       365 G~~pP~~f~rpeV~~iL---~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v  432 (568)
T PRK05537        365 GLEIPEWFSFPEVVAEL---RRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV  432 (568)
T ss_pred             CCCCChhhcHHHHHHHH---HHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence            36778888777664322   2222345667889999999999999999999999974      67777766

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=97.49  E-value=0.00044  Score=80.54  Aligned_cols=35  Identities=23%  Similarity=0.421  Sum_probs=32.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV   98 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~   98 (818)
                      .|+|+|++||||||+++.|++.+|+.++++|.+..
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~   36 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIE   36 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHH
Confidence            48999999999999999999999999999999754

>PHA00729 NTP-binding motif containing protein

Probab=97.49  E-value=0.00091  Score=69.76  Aligned_cols=106  Identities=22%  Similarity=0.119  Sum_probs=65.8

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCC--cccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGC--EVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL  593 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~--~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~  593 (818)
                      ...-|.|+|++|+||||+|..|+..++.  ..++.|+-.....      ...--+|.+.+.+.|.....+.         
T Consensus        16 ~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~------~~~~fid~~~Ll~~L~~a~~~~---------   80 (226)
T PHA00729         16 GFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYV------QNSYFFELPDALEKIQDAIDND---------   80 (226)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcC------CcEEEEEHHHHHHHHHHHHhcC---------
Confidence            4567899999999999999999998752  2333331111110      0112357777777776543321         


Q ss_pred             cccccCCCcceeeecCCcEEEEEe---------ccc--------chHhhhhcCCEEEEEEcChhHHHHHHHhcC
Q 003460          594 ETGARSGFKELEVSEDCGVIIFEG---------VYA--------LHPEIRKSLDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       594 ~~~~r~~~~~~~~~~~~~vvIvEG---------~~~--------~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                                    ...+++|+|+         |+.        +.+.++..++..++...+.+....+...|.
T Consensus        81 --------------~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg  140 (226)
T PHA00729         81 --------------YRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKG  140 (226)
T ss_pred             --------------CCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCC
Confidence                          1125677777         451        345667778888888887777666655543

>PHA00729 NTP-binding motif containing protein

Probab=97.48  E-value=0.00049  Score=71.74  Aligned_cols=107  Identities=18%  Similarity=0.132  Sum_probs=66.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCC--eEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhh
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGC--TLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK  137 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~--~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~  137 (818)
                      .+...|+|+|++|+||||+|..|+..++.  ..++.|  +..+......--++.+.+.+.|.....+.            
T Consensus        15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~--~~~~d~~~~~~fid~~~Ll~~L~~a~~~~------------   80 (226)
T PHA00729         15 NGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTK--DDAWQYVQNSYFFELPDALEKIQDAIDND------------   80 (226)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccch--hhHHhcCCcEEEEEHHHHHHHHHHHHhcC------------
Confidence            34567999999999999999999998762  233333  22222222223456666666665432221            


Q ss_pred             ccccccccccCCccEEEEEecc-----------------cchhhhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          138 NRIGSKVIKGASSGVVIVDGTY-----------------ALDARLRSLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       138 ~~~~~~~~~~~~~~vVIvEG~~-----------------l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                                ...+++|+|+..                 .+.+.++..+++.++..++.+....+...|.
T Consensus        81 ----------~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg  140 (226)
T PHA00729         81 ----------YRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKG  140 (226)
T ss_pred             ----------CCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCC
Confidence                      012356777621                 1234566678999999998888777766654

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.48  E-value=0.00022  Score=75.90  Aligned_cols=23  Identities=22%  Similarity=0.534  Sum_probs=21.1

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHh
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      +|.++|++||||||+|+.|++.+
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l   23 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKL   23 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999987

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.47  E-value=0.0006  Score=70.51  Aligned_cols=28  Identities=32%  Similarity=0.489  Sum_probs=24.3

Q ss_pred             hcCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 003460           58 KKGGIVTVGIGGPSGSGKTSLAEKLASV   85 (818)
Q Consensus        58 ~~~~~~iIgI~G~sGSGKSTlA~~La~~   85 (818)
                      +++.+.+|.|+||||||||||++.|.+.
T Consensus         9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738          9 KPAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            3566789999999999999999999763

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=97.46  E-value=0.0013  Score=66.93  Aligned_cols=26  Identities=27%  Similarity=0.471  Sum_probs=23.7

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      ..+|.|.|+.||||||+++.|++.++
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~   28 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQ   28 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            36799999999999999999999885

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.44  E-value=0.00055  Score=65.96  Aligned_cols=102  Identities=20%  Similarity=0.360  Sum_probs=69.8

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhc-c--cCCCcccccHHHHHHHHHHHh-cCCceecccccccc
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKD-F--KYDDFSSLDLSLLSKNISDIR-NGRRTKVPIFDLET  595 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~-~--~~d~p~t~D~~ll~~~L~~L~-~g~~v~~P~yD~~~  595 (818)
                      |.|+|-+|+||||+|.+|++.+|...|.+.|+.+..+.-. +  .++.+ -+|-+.+...|..+. .|..|         
T Consensus        10 ILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~-i~DEdkv~D~Le~~m~~Gg~I---------   79 (176)
T KOG3347|consen   10 ILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCH-ILDEDKVLDELEPLMIEGGNI---------   79 (176)
T ss_pred             EEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCc-cccHHHHHHHHHHHHhcCCcE---------
Confidence            6689999999999999999999999999999988754321 1  12233 257777777776643 22221         


Q ss_pred             cccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCc
Q 003460          596 GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDK  651 (818)
Q Consensus       596 ~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~  651 (818)
                                       |=.-| |-++|+  ..||+.+.+.+|...-..|...|..
T Consensus        80 -----------------VDyHg-Cd~Fpe--rwfdlVvVLr~~~s~LY~RL~sRgY  115 (176)
T KOG3347|consen   80 -----------------VDYHG-CDFFPE--RWFDLVVVLRTPNSVLYDRLKSRGY  115 (176)
T ss_pred             -----------------Eeecc-cCccch--hheeEEEEEecCchHHHHHHHHcCC
Confidence                             11111 112332  3589999999999998888876653

>smart00072 GuKc Guanylate kinase homologues

Probab=97.44  E-value=0.0007  Score=68.63  Aligned_cols=122  Identities=18%  Similarity=0.192  Sum_probs=64.4

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhC----Ccccccccccchhhh--hcccCCCcccccHHHHHHHHHHHhcCCceecccc
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVG----CEVVSLESYFKSEQV--KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIF  591 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg----~~vis~Ddfy~~~~~--~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~y  591 (818)
                      .+|.|.|||||||+|+++.|.+...    ..+.++-..-++.+.  .++.|     .+.   .+.-..+..|+-++.-.|
T Consensus         3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~f-----vs~---~ef~~~i~~g~fve~~~~   74 (184)
T smart00072        3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHF-----VSR---EEFEDDIKSGLFLEWGEY   74 (184)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEE-----CCH---HHHHHHHHcCCeEEEEEE
Confidence            4677899999999999999988642    111111111111110  11111     111   222334455666665555


Q ss_pred             cccccccCCCcce-eeecCCcEEEEEecccchHhhhhc-CC-EEEEEEcChhHHHHHHHh
Q 003460          592 DLETGARSGFKEL-EVSEDCGVIIFEGVYALHPEIRKS-LD-LWIAVVGGVHSHLISRVQ  648 (818)
Q Consensus       592 D~~~~~r~~~~~~-~~~~~~~vvIvEG~~~~~~~l~~~-~D-~~I~v~~~~d~rl~Rri~  648 (818)
                      .-....-.- ... .......++|+++-.-+...+... .+ ..||+.++....+.+|+.
T Consensus        75 ~g~~YGt~~-~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~  133 (184)
T smart00072       75 SGNYYGTSK-ETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLR  133 (184)
T ss_pred             cCcCcccCH-HHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHH
Confidence            432211000 011 112346789999886665555543 34 789998777766666665

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK14526 adenylate kinase; Provisional

Probab=97.44  E-value=0.00056  Score=71.04  Aligned_cols=35  Identities=29%  Similarity=0.458  Sum_probs=32.6

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      |+|.|++||||||+|+.|+..++..++|+++..+.
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~   37 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRE   37 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceeecChHHHH
Confidence            67899999999999999999999999999999875

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.44  E-value=0.00098  Score=66.90  Aligned_cols=124  Identities=13%  Similarity=0.126  Sum_probs=65.4

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhh-----hcccCCCcccccHHHHHHHHHHHhcCCceeccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV-----KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPI  590 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~-----~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~  590 (818)
                      ...++.|+||||+||||+++.|-+..+ ..+|.-.-=++...     .+|.|-     +.   .++.+.+..++-+++..
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~SVS~TTR~pR~gEv~G~dY~Fv-----s~---~EF~~~i~~~~fLE~a~   73 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDK-LRFSVSATTRKPRPGEVDGVDYFFV-----TE---EEFEELIERDEFLEWAE   73 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcC-eEEEEEeccCCCCCCCcCCceeEeC-----CH---HHHHHHHhcCCcEEEEE
Confidence            356788999999999999999988653 22222111111111     122231     12   22333444555555554


Q ss_pred             ccccccccCCCc--ce-eeecCCcEEEEEecccchHhhhhcC-C-EEEEEEcChhHHHHHHHhcCc
Q 003460          591 FDLETGARSGFK--EL-EVSEDCGVIIFEGVYALHPEIRKSL-D-LWIAVVGGVHSHLISRVQRDK  651 (818)
Q Consensus       591 yD~~~~~r~~~~--~~-~~~~~~~vvIvEG~~~~~~~l~~~~-D-~~I~v~~~~d~rl~Rri~Rd~  651 (818)
                      |.-   ...+..  .. .......-||+|==.-+...+++.+ + ..||+.+|.-..|.+|+.+..
T Consensus        74 ~~g---nyYGT~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rg  136 (191)
T COG0194          74 YHG---NYYGTSREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRG  136 (191)
T ss_pred             EcC---CcccCcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccC
Confidence            433   111110  01 1111233444444333444455544 3 688999999999999987653

>PRK14529 adenylate kinase; Provisional

Probab=97.44  E-value=0.00062  Score=71.21  Aligned_cols=116  Identities=16%  Similarity=0.032  Sum_probs=67.3

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccccccC
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARS  599 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r~  599 (818)
                      |.|.||+||||||.|+.|++.++...+|..+..+.+-..    +.+      +..+.-.-+.+|..+.--.......++.
T Consensus         3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~----~t~------lg~~i~~~i~~G~lvpdei~~~lv~~~l   72 (223)
T PRK14529          3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGG----GTE------LGKKAKEYIDRGDLVPDDITIPMILETL   72 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccC----CCh------HHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence            667999999999999999999999999999888752110    000      1111111122333221111111011111


Q ss_pred             CCcceeeecCCcEEEEEecccchH---hhh-------hcCCEEEEEEcChhHHHHHHHhcCc
Q 003460          600 GFKELEVSEDCGVIIFEGVYALHP---EIR-------KSLDLWIAVVGGVHSHLISRVQRDK  651 (818)
Q Consensus       600 ~~~~~~~~~~~~vvIvEG~~~~~~---~l~-------~~~D~~I~v~~~~d~rl~Rri~Rd~  651 (818)
                      .     ... ..-+|++|.=--..   .+.       -..|..|+++++.+..+.|...|..
T Consensus        73 ~-----~~~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~  128 (223)
T PRK14529         73 K-----QDG-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRL  128 (223)
T ss_pred             h-----ccC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCcc
Confidence            0     001 24478888654321   111       2378999999999999999888754

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=97.41  E-value=0.00026  Score=71.20  Aligned_cols=37  Identities=27%  Similarity=0.469  Sum_probs=31.1

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhC--Ccccccccccch
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLESYFKS  554 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg--~~vis~Ddfy~~  554 (818)
                      .||.+.|+|.|||||+|+.|++.+.  ...+++|.|...
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~   40 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM   40 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh
Confidence            3789999999999999999999996  357889999873

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=97.41  E-value=0.00072  Score=72.42  Aligned_cols=127  Identities=20%  Similarity=0.202  Sum_probs=69.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG  141 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~  141 (818)
                      |.+|.|+|.|||||||..+.|.. +|..+||  .             +-...+.+.+..+..+.. ..        .   
T Consensus         1 m~~vIiTGlSGaGKs~Al~~lED-~Gy~cvD--N-------------lP~~Ll~~l~~~~~~~~~-~~--------~---   52 (284)
T PF03668_consen    1 MELVIITGLSGAGKSTALRALED-LGYYCVD--N-------------LPPSLLPQLIELLAQSNS-KI--------E---   52 (284)
T ss_pred             CeEEEEeCCCcCCHHHHHHHHHh-cCeeEEc--C-------------CcHHHHHHHHHHHHhcCC-CC--------c---
Confidence            46899999999999999999954 6665554  1             222333333332221110 00        0   


Q ss_pred             ccccccCCccEEEEEec---cc-----chhhhh-cCCC-EEEEEEcCHHHHHHHHHHhccCCC----c-CHHHHHHhhch
Q 003460          142 SKVIKGASSGVVIVDGT---YA-----LDARLR-SLLD-IRVAVVGGVHFSLISKVQYDIGDS----C-SLDSLIDSIFP  206 (818)
Q Consensus       142 ~~~~~~~~~~vVIvEG~---~l-----~~~~l~-~~~D-~~I~Vda~~e~~l~Rri~Rd~~~~----~-s~e~~~~~~~p  206 (818)
                              .-.+.+|.-   +.     ....+. ...+ -.+|++|+.++-++|.-.-....-    . ..+.     ..
T Consensus        53 --------~~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~-----I~  119 (284)
T PF03668_consen   53 --------KVAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEA-----IE  119 (284)
T ss_pred             --------eEEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHH-----HH
Confidence                    001222211   00     001222 2233 458999999987777644332211    1 2222     34


Q ss_pred             hhhhccCCccccCcEEEECCCCC
Q 003460          207 LFRKHIEPDLHHAQIRINNRFVS  229 (818)
Q Consensus       207 ~~~~~Iep~~~~ADiII~N~~~~  229 (818)
                      .+++.++|-+..||+||+.+..+
T Consensus       120 ~Er~~L~~lr~~Ad~vIDTs~l~  142 (284)
T PF03668_consen  120 KERELLEPLRERADLVIDTSNLS  142 (284)
T ss_pred             HHHHHHHHHHHhCCEEEECCCCC
Confidence            55667788899999999988543

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=97.40  E-value=0.00032  Score=79.90  Aligned_cols=39  Identities=41%  Similarity=0.513  Sum_probs=35.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCe-EEeccceec
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCT-LISMENYRV   98 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~-vI~~D~~~~   98 (818)
                      .+|.+|.++|++||||||+|..||..+|+. +|++|.+..
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~  292 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVRE  292 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHH
Confidence            458999999999999999999999999986 789999744

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=97.37  E-value=0.00043  Score=71.07  Aligned_cols=41  Identities=27%  Similarity=0.519  Sum_probs=31.4

Q ss_pred             cCCCCEEEeeeCCCCccHHHHHHHHHHHh---CCcccccccccc
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSLESYFK  553 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~l---g~~vis~Ddfy~  553 (818)
                      ....|.+|.++|++||||||++..+...+   ++.+|+.|+|-.
T Consensus        11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~   54 (199)
T PF06414_consen   11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ   54 (199)
T ss_dssp             --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred             cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence            34689999999999999999999999987   477899999844

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK13975 thymidylate kinase; Provisional

Probab=97.36  E-value=0.0011  Score=67.49  Aligned_cols=26  Identities=31%  Similarity=0.417  Sum_probs=24.3

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCC
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGC  543 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~  543 (818)
                      .+|.|.|+.||||||+++.|++.++.
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~~   28 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLNA   28 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            57999999999999999999999984

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=97.35  E-value=0.00018  Score=77.94  Aligned_cols=39  Identities=33%  Similarity=0.589  Sum_probs=35.0

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCc-cccccccc
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCE-VVSLESYF  552 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~-vis~Ddfy  552 (818)
                      .+.|++|.|+|++||||||+|..|+..+|.. +++.|.+-
T Consensus        89 ~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~r  128 (301)
T PRK04220         89 SKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIR  128 (301)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHH
Confidence            3579999999999999999999999999876 78888775

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=97.34  E-value=0.00013  Score=73.76  Aligned_cols=129  Identities=16%  Similarity=0.141  Sum_probs=57.2

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHH-HHHHHHHhcCCc----eecccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLL-SKNISDIRNGRR----TKVPIFDL  593 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll-~~~L~~L~~g~~----v~~P~yD~  593 (818)
                      ||.|++..|||++|+|+.|++.||..+++-+-+...........+....+|-... ...+..+..+..    ...+..+.
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPYYDREIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDDK   80 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--EE-HHHHHHCT------------SS-HHH--HH---HHS--------------H
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCccCCHHHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHHH
Confidence            7899999999999999999999998886542221111111111112222333222 222233222110    01111110


Q ss_pred             cccccCCCcceeeecCCcEEEEEecccchHhhhhc-CCEEEEEEcChhHHHHHHHhcC
Q 003460          594 ETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKS-LDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       594 ~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~-~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                      . ..... +.+......+-+|+.|.++.+ -+++. -.+.||+.+|.+.|..|.+.|.
T Consensus        81 ~-~~~~~-~~i~~la~~~~~Vi~GR~a~~-il~~~~~~l~V~i~A~~~~Rv~ri~~~~  135 (179)
T PF13189_consen   81 I-FRAQS-EIIRELAAKGNCVIVGRCANY-ILRDIPNVLHVFIYAPLEFRVERIMERE  135 (179)
T ss_dssp             H-HHHHH-HHHHHHHH---EEEESTTHHH-HTTT-TTEEEEEEEE-HHHHHHHHHHHH
T ss_pred             H-HHHHH-HHHHHHhccCCEEEEecCHhh-hhCCCCCeEEEEEECCHHHHHHHHHHHc
Confidence            0 00000 001111113467888999865 12222 2389999999999999999885

>PLN02199 shikimate kinase

Probab=97.34  E-value=0.00077  Score=72.79  Aligned_cols=36  Identities=22%  Similarity=0.412  Sum_probs=33.0

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      -|.++|.+||||||+++.|++.+|+.++++|.+...
T Consensus       104 ~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~  139 (303)
T PLN02199        104 SMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQ  139 (303)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHH
Confidence            567899999999999999999999999999988765

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=97.32  E-value=0.00051  Score=67.33  Aligned_cols=34  Identities=26%  Similarity=0.445  Sum_probs=26.2

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHh---CCc--cccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIV---GCE--VVSLESYF  552 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~l---g~~--vis~Ddfy  552 (818)
                      +|.|.|.+||||||+|+.|+..+   +..  +++.|.+.
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r   39 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR   39 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence            47789999999999999999988   533  44445443

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=97.30  E-value=0.0016  Score=65.90  Aligned_cols=40  Identities=25%  Similarity=0.329  Sum_probs=31.7

Q ss_pred             cCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccccc
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYF  552 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy  552 (818)
                      ....+.+|+|+|++||||||+++.|...+.     +.+++.|++-
T Consensus        14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r   58 (184)
T TIGR00455        14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR   58 (184)
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence            345678999999999999999999998872     3456666554

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=97.30  E-value=0.00016  Score=80.00  Aligned_cols=35  Identities=17%  Similarity=0.369  Sum_probs=30.4

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhC------Ccccccccccch
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVG------CEVVSLESYFKS  554 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg------~~vis~Ddfy~~  554 (818)
                      +.++|++||||||+++.|+..++      +.++++|||+..
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~   42 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPE   42 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccc
Confidence            56799999999999999998775      459999999964

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.30  E-value=0.0002  Score=78.37  Aligned_cols=39  Identities=36%  Similarity=0.609  Sum_probs=35.6

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccc--ccch
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES--YFKS  554 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Dd--fy~~  554 (818)
                      .+.+|.|+||+||||||+|..|++.+++.+||.|+  +|+.
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~   43 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRG   43 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeec
Confidence            35689999999999999999999999999999999  5765

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=97.28  E-value=0.00048  Score=81.42  Aligned_cols=38  Identities=18%  Similarity=0.219  Sum_probs=33.4

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      ...|.+.|.+||||||+++.|++.||..++++|++.-.
T Consensus         6 ~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~   43 (542)
T PRK14021          6 RPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIER   43 (542)
T ss_pred             CccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHH
Confidence            34566789999999999999999999999999997654

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=97.26  E-value=0.00057  Score=66.84  Aligned_cols=112  Identities=21%  Similarity=0.153  Sum_probs=62.6

Q ss_pred             eeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccccccCCC
Q 003460          522 IGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGF  601 (818)
Q Consensus       522 IsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r~~~  601 (818)
                      |.||+||||||+|+.|++.+|...||+++..+..-..    +   +   ++..+.-..+.+|+.+.-...-.....+.. 
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~----~---s---~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~-   69 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKS----D---S---ELGKQIQEYLDNGELVPDELVIELLKERLE-   69 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHT----T---S---HHHHHHHHHHHTTSS--HHHHHHHHHHHHH-
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhh----h---h---HHHHHHHHHHHhhccchHHHHHHHHHHHHh-
Confidence            5799999999999999999999999999988753211    0   0   111112222344544322221111111110 


Q ss_pred             cceeeecCCcEEEEEecccch---Hhhh-------hcCCEEEEEEcChhHHHHHHHh
Q 003460          602 KELEVSEDCGVIIFEGVYALH---PEIR-------KSLDLWIAVVGGVHSHLISRVQ  648 (818)
Q Consensus       602 ~~~~~~~~~~vvIvEG~~~~~---~~l~-------~~~D~~I~v~~~~d~rl~Rri~  648 (818)
                          ......-+|++|.=--.   ..+.       ...+..|+++++.+....|...
T Consensus        70 ----~~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~  122 (151)
T PF00406_consen   70 ----QPPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ  122 (151)
T ss_dssp             ----SGGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred             ----hhcccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence                01223568888876432   1222       2347899999999888777655

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=97.23  E-value=0.0015  Score=64.85  Aligned_cols=41  Identities=20%  Similarity=0.312  Sum_probs=32.9

Q ss_pred             cCCCCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccccc
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFK  553 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddfy~  553 (818)
                      +..++.+|=++|.|||||||+|.+|.+.|   |  +.+++.|+.-.
T Consensus        19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~   64 (197)
T COG0529          19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRH   64 (197)
T ss_pred             hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhh
Confidence            44578999999999999999999999987   4  44666665543

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.22  E-value=0.0018  Score=64.82  Aligned_cols=37  Identities=32%  Similarity=0.370  Sum_probs=30.6

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYF  552 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy  552 (818)
                      +..+|+|+|++||||||+|+.|+..+.     +.+++.|.+.
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~   44 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR   44 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence            456899999999999999999999873     4567777664

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=97.22  E-value=0.00062  Score=68.91  Aligned_cols=125  Identities=18%  Similarity=0.112  Sum_probs=64.6

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCC----cccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccc
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGC----EVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL  593 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~----~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~  593 (818)
                      .+|.|+||+||||||+++.|.+.++-    .+-++-.--+   .++.+-.+   +.+-.-.+....+.+|+-++.-.|+-
T Consensus         3 r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r---~~E~~g~~---y~fvs~~~f~~~~~~~~fie~~~~~g   76 (183)
T PF00625_consen    3 RPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPR---PGEVDGVD---YHFVSKEEFERMIKAGEFIEYGEYDG   76 (183)
T ss_dssp             SEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GG---TTS-TTTS---EEE--HHHHHHHHHTTHEEEEEEETT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCc---ccccCCcc---eEEEeechhhhhhccccEEEEeeecc
Confidence            35667999999999999999987751    1111111111   11111000   11111122223345566676666653


Q ss_pred             cccccCCCcce-eeecCCcEEEEEecccchHhhhhc--CCEEEEEEcChhHHHHHHHhc
Q 003460          594 ETGARSGFKEL-EVSEDCGVIIFEGVYALHPEIRKS--LDLWIAVVGGVHSHLISRVQR  649 (818)
Q Consensus       594 ~~~~r~~~~~~-~~~~~~~vvIvEG~~~~~~~l~~~--~D~~I~v~~~~d~rl~Rri~R  649 (818)
                      ....-. .... .......++|++.-..+...++..  .-+.||+.++....+.+++.+
T Consensus        77 ~~YGt~-~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~  134 (183)
T PF00625_consen   77 NYYGTS-KSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRR  134 (183)
T ss_dssp             EEEEEE-HHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHT
T ss_pred             hhhhhc-cchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhc
Confidence            321100 0011 122345677777654444455443  237899998888888888755

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=97.17  E-value=0.0004  Score=68.62  Aligned_cols=29  Identities=24%  Similarity=0.471  Sum_probs=27.0

Q ss_pred             CCccHHHHHHHHHHHhCCcccccccccch
Q 003460          526 SGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       526 sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      +||||||+++.|+..||..++++|+++-.
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~   29 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEE   29 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHH
Confidence            69999999999999999999999998754

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>COG4639 Predicted kinase [General function prediction only]

Probab=97.17  E-value=0.00082  Score=65.37  Aligned_cols=101  Identities=18%  Similarity=0.275  Sum_probs=62.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc--cCCCCC-c---ccHHHHHHHHHh-hhcCCccccccchh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD--EGNDLD-S---IDFDALVQNLQD-LTEGKDTLIPMFDY  134 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~--~~~~~~-~---~d~~~l~~~L~~-l~~~~~i~~p~~d~  134 (818)
                      ..+|++.|.+||||||+|+..  .+.+.+++.|++...+.  ...... .   .-++.+.+.+.. +..           
T Consensus         2 ~~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~-----------   68 (168)
T COG4639           2 RILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRR-----------   68 (168)
T ss_pred             ceEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHc-----------
Confidence            357999999999999999985  35799999999977441  111000 0   111222222222 222           


Q ss_pred             hhhccccccccccCCccEEEEEecccchh---------hhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          135 QQKNRIGSKVIKGASSGVVIVDGTYALDA---------RLRSLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       135 ~~~~~~~~~~~~~~~~~vVIvEG~~l~~~---------~l~~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                                     .+.-|+|...+-.+         .-..+.+..|+++.|...+..|-..|.
T Consensus        69 ---------------Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~  118 (168)
T COG4639          69 ---------------GKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRE  118 (168)
T ss_pred             ---------------CCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccc
Confidence                           23456666654431         222455677999999999998865443

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=97.14  E-value=0.0013  Score=64.68  Aligned_cols=37  Identities=22%  Similarity=0.299  Sum_probs=32.4

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh-CCeEEeccce
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENY   96 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L-g~~vI~~D~~   96 (818)
                      +++++|.|+|.+|+||||+.+.+.+.+ +..+++-.++
T Consensus         2 k~~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~   39 (189)
T COG2019           2 KGRKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDL   39 (189)
T ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHH
Confidence            347899999999999999999999988 7778887776

>PLN02842 nucleotide kinase

Probab=97.12  E-value=0.00092  Score=77.30  Aligned_cols=115  Identities=15%  Similarity=0.101  Sum_probs=63.6

Q ss_pred             eeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccccccCCC
Q 003460          522 IGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGF  601 (818)
Q Consensus       522 IsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r~~~  601 (818)
                      |.|++||||||+|+.|++.++..++++++..+.+...       ++---..+.+.   +.+|+.+.-........++...
T Consensus         2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~-------~T~iG~~Ire~---l~~G~lvPdeiv~~ll~drl~~   71 (505)
T PLN02842          2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSA-------GTDIGKRAKEF---MNSGRLVPDEIVIAMVTGRLSR   71 (505)
T ss_pred             eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhcc-------CCHHHHHHHHH---HhCCCCCcHHHHHHHHHHHHhC
Confidence            6899999999999999999999999999988753111       01001111111   1223221111111111111100


Q ss_pred             cceeeecCCcEEEEEecccch---Hhhh---hcCCEEEEEEcChhHHHHHHHhcC
Q 003460          602 KELEVSEDCGVIIFEGVYALH---PEIR---KSLDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       602 ~~~~~~~~~~vvIvEG~~~~~---~~l~---~~~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                        .. ... .-+|+||.---.   ..+.   ...|+.|+++.+.++.+.|...|.
T Consensus        72 --~~-~~~-~G~ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~  122 (505)
T PLN02842         72 --ED-AKE-KGWLLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRR  122 (505)
T ss_pred             --cc-ccC-CcEEEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccc
Confidence              00 011 225669842211   1222   236899999999999999987774

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=97.09  E-value=0.0032  Score=62.67  Aligned_cols=31  Identities=26%  Similarity=0.338  Sum_probs=28.2

Q ss_pred             eCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460          523 GGPSGSGKTSLAHKMANIVGCEVVSLESYFK  553 (818)
Q Consensus       523 sG~sGSGKTTla~~L~~~lg~~vis~Ddfy~  553 (818)
                      .|+|||||||+++.|+..+|...++.|.++.
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~   31 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHP   31 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccCCc
Confidence            4999999999999999999999999988764

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=97.08  E-value=0.0022  Score=61.83  Aligned_cols=51  Identities=29%  Similarity=0.421  Sum_probs=39.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceecccccCCCCCccc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSID  110 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~~~~~~~~d  110 (818)
                      .+-.+|-|+|.|||||||+|-+|.+.|   |  +.+++.|....++...-...+-|
T Consensus        29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~d   84 (207)
T KOG0635|consen   29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAED   84 (207)
T ss_pred             CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhh
Confidence            345789999999999999999999877   3  56789999988765433333333

>PRK13973 thymidylate kinase; Provisional

Probab=97.06  E-value=0.0036  Score=65.04  Aligned_cols=31  Identities=23%  Similarity=0.389  Sum_probs=27.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHh---CCeEEec
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVI---GCTLISM   93 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~L---g~~vI~~   93 (818)
                      .+|+|-|+.||||||.++.|++.|   |..++.+
T Consensus         4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~   37 (213)
T PRK13973          4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT   37 (213)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            689999999999999999999999   7777655

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.05  E-value=0.0019  Score=66.80  Aligned_cols=28  Identities=36%  Similarity=0.630  Sum_probs=24.5

Q ss_pred             cCCCCEEEeeeCCCCccHHHHHHHHHHH
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLAHKMANI  540 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~  540 (818)
                      +.+.+.+|.|+|||||||||+++.|.+.
T Consensus         9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738          9 KPAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            4567889999999999999999999763

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.03  E-value=0.002  Score=70.04  Aligned_cols=27  Identities=26%  Similarity=0.399  Sum_probs=22.5

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGC  543 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~  543 (818)
                      ...+|+|+|++||||||+++.|.. +|.
T Consensus         5 ~~~~i~i~G~~GsGKtt~~~~l~~-~g~   31 (288)
T PRK05416          5 PMRLVIVTGLSGAGKSVALRALED-LGY   31 (288)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHH-cCC
Confidence            345899999999999999999964 453

>PLN02840 tRNA dimethylallyltransferase

Probab=97.02  E-value=0.00055  Score=77.47  Aligned_cols=37  Identities=32%  Similarity=0.546  Sum_probs=34.0

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY  551 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf  551 (818)
                      ....+|.|+||+||||||+|..|++.++..+||.|.+
T Consensus        19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~   55 (421)
T PLN02840         19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSV   55 (421)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEecccc
Confidence            4566899999999999999999999999999999985

>PLN02165 adenylate isopentenyltransferase

Probab=97.01  E-value=0.00055  Score=75.24  Aligned_cols=36  Identities=28%  Similarity=0.410  Sum_probs=33.2

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY  551 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf  551 (818)
                      +..+|+|.||+||||||||..|+..++..++++|..
T Consensus        42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~   77 (334)
T PLN02165         42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM   77 (334)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence            445899999999999999999999999999999987

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=97.01  E-value=0.0011  Score=77.47  Aligned_cols=38  Identities=21%  Similarity=0.260  Sum_probs=34.6

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY  551 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf  551 (818)
                      ...|.+|.+.|++||||||+|+.++...|..+++.|.+
T Consensus       366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l  403 (526)
T TIGR01663       366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL  403 (526)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH
Confidence            35788999999999999999999999889999999976

Note that the EC number for the kinase function is: 2.7.1.78

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=96.93  E-value=0.0034  Score=63.43  Aligned_cols=42  Identities=38%  Similarity=0.660  Sum_probs=34.4

Q ss_pred             cCCCC-EEEeeeCCCCccHHHHHHHHHHHh----CCcccccccccch
Q 003460          513 NKGLP-VIVGIGGPSGSGKTSLAHKMANIV----GCEVVSLESYFKS  554 (818)
Q Consensus       513 ~~~~p-~iIgIsG~sGSGKTTla~~L~~~l----g~~vis~Ddfy~~  554 (818)
                      ..++| +.|++.||+|||||||..++...|    ...||.-|=|+..
T Consensus         8 ~~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~   54 (202)
T COG0378           8 EKNRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKE   54 (202)
T ss_pred             HhcCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechh
Confidence            44567 999999999999999998877666    5778888888755

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.91  E-value=0.001  Score=73.63  Aligned_cols=41  Identities=22%  Similarity=0.416  Sum_probs=33.4

Q ss_pred             HHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccc
Q 003460          511 LENKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY  551 (818)
Q Consensus       511 ~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddf  551 (818)
                      ....+++++|||+|++|||||||+..|...+.     +.+++.|.-
T Consensus        50 ~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~   95 (332)
T PRK09435         50 LPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPS   95 (332)
T ss_pred             hhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCC
Confidence            33467899999999999999999999887762     567777764

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=96.91  E-value=0.0015  Score=70.36  Aligned_cols=105  Identities=15%  Similarity=0.148  Sum_probs=53.0

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhC-----CcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL  593 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~  593 (818)
                      +|.|+|.+||||||+|+.|++.+.     +.+++-|++....  ..  |.++  .....+...+.....           
T Consensus         3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~--~~--y~~~--~~Ek~~R~~l~s~v~-----------   65 (270)
T PF08433_consen    3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDR--ND--YADS--KKEKEARGSLKSAVE-----------   65 (270)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TT--SS--S--G--GGHHHHHHHHHHHHH-----------
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccch--hh--hhch--hhhHHHHHHHHHHHH-----------
Confidence            577999999999999999999863     4456644444211  11  2222  222222222222000           


Q ss_pred             cccccCCCcceeeecCCcEEEEEecccch---Hh---hhhcC---CEEEEEEcChhHHHHHHHhcCc
Q 003460          594 ETGARSGFKELEVSEDCGVIIFEGVYALH---PE---IRKSL---DLWIAVVGGVHSHLISRVQRDK  651 (818)
Q Consensus       594 ~~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~---l~~~~---D~~I~v~~~~d~rl~Rri~Rd~  651 (818)
                                 .......+||+++.+-.-   -+   +....   -..||++++.+.++.|...|..
T Consensus        66 -----------r~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~  121 (270)
T PF08433_consen   66 -----------RALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPE  121 (270)
T ss_dssp             -----------HHHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-
T ss_pred             -----------HhhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCC
Confidence                       001224799999988432   11   11112   2689999999999999988763

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.90  E-value=0.00084  Score=70.85  Aligned_cols=45  Identities=24%  Similarity=0.570  Sum_probs=32.3

Q ss_pred             HHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh-----CCcccccc
Q 003460          505 QAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLE  549 (818)
Q Consensus       505 ~~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~l-----g~~vis~D  549 (818)
                      ..++.+....++..+|||+||+|+|||||...|...+     .+.|+..|
T Consensus        17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVD   66 (266)
T PF03308_consen   17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVD   66 (266)
T ss_dssp             HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred             HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEEC
Confidence            3445555567788999999999999999999999876     24466555

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=96.87  E-value=0.0017  Score=75.77  Aligned_cols=36  Identities=14%  Similarity=0.404  Sum_probs=32.9

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      .|.|+|++||||||+++.|++.+|+.++++|++...
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~   37 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIER   37 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHH
Confidence            378999999999999999999999999999988643

>PRK13973 thymidylate kinase; Provisional

Probab=96.84  E-value=0.0057  Score=63.56  Aligned_cols=32  Identities=22%  Similarity=0.403  Sum_probs=26.6

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHh---CCccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSL  548 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~l---g~~vis~  548 (818)
                      ..+|.|-|+.||||||.++.|++.|   |..++.+
T Consensus         3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~   37 (213)
T PRK13973          3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT   37 (213)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            3678899999999999999999998   5555543

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.82  E-value=0.0013  Score=70.36  Aligned_cols=120  Identities=21%  Similarity=0.275  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh---C--CcccccccccchhhhhcccCCCcccc--cHHHHHH
Q 003460          503 SVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFKSEQVKDFKYDDFSSL--DLSLLSK  575 (818)
Q Consensus       503 ~~~~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddfy~~~~~~~~~~d~p~t~--D~~ll~~  575 (818)
                      +.+++..+....+++.+|||+|++|+||||+..+|...|   |  +.||+.|==-.-         .-+++  |.-.|. 
T Consensus        37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~---------TGGsiLGDRiRM~-  106 (323)
T COG1703          37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF---------TGGSILGDRIRMQ-  106 (323)
T ss_pred             HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCC---------CCccccccHhhHH-
Confidence            445666777788999999999999999999999999877   2  556666621100         00111  111111 


Q ss_pred             HHHHHhcCCceecccccccccccC---CC--cce-----eeecCCcEEEEEecccch--HhhhhcCCEEEEEEcCh
Q 003460          576 NISDIRNGRRTKVPIFDLETGARS---GF--KEL-----EVSEDCGVIIFEGVYALH--PEIRKSLDLWIAVVGGV  639 (818)
Q Consensus       576 ~L~~L~~g~~v~~P~yD~~~~~r~---~~--~~~-----~~~~~~~vvIvEG~~~~~--~~l~~~~D~~I~v~~~~  639 (818)
                         .+.....    .|-.+...|.   +-  ..+     ......|+||+|-.-++.  -.+.++.|..+++..|.
T Consensus       107 ---~~~~~~~----vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg  175 (323)
T COG1703         107 ---RLAVDPG----VFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPG  175 (323)
T ss_pred             ---hhccCCC----eEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCC
Confidence               1111111    1111111111   00  001     012367999999999986  56789999999997653

>COG4639 Predicted kinase [General function prediction only]

Probab=96.80  E-value=0.0017  Score=63.24  Aligned_cols=36  Identities=31%  Similarity=0.428  Sum_probs=29.8

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      +.+|.+.|.|||||||+|+..  ...+.++|+||+-..
T Consensus         2 ~~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~   37 (168)
T COG4639           2 RILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLL   37 (168)
T ss_pred             ceEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHH
Confidence            457889999999999999974  346889999999763

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.79  E-value=0.0018  Score=65.77  Aligned_cols=24  Identities=33%  Similarity=0.555  Sum_probs=21.8

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhC
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      +|.++|++||||||+|+.|+..|.
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L~   26 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKELR   26 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHHHHH
Confidence            567899999999999999999883

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.79  E-value=0.0014  Score=61.56  Aligned_cols=32  Identities=38%  Similarity=0.699  Sum_probs=27.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460           65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENY   96 (818)
Q Consensus        65 IgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~   96 (818)
                      |.|.|++|+||||+++.+++.++.+++..+..
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~   32 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGS   32 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETT
T ss_pred             CEEECcCCCCeeHHHHHHHhhccccccccccc
Confidence            67999999999999999999999887666553

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PLN02748 tRNA dimethylallyltransferase

Probab=96.77  E-value=0.001  Score=76.51  Aligned_cols=40  Identities=33%  Similarity=0.567  Sum_probs=36.0

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccc--ccch
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES--YFKS  554 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Dd--fy~~  554 (818)
                      +.+.+|.|+||+||||||||..|+..+++.+|+.|.  +|+.
T Consensus        20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrg   61 (468)
T PLN02748         20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSG   61 (468)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCC
Confidence            455689999999999999999999999999999996  6875

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.75  E-value=0.0021  Score=71.06  Aligned_cols=44  Identities=25%  Similarity=0.528  Sum_probs=34.5

Q ss_pred             HHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccce
Q 003460           53 QELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENY   96 (818)
Q Consensus        53 ~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~   96 (818)
                      +.+.....++.+|||+|++|||||||+..|...+   |  +.+|+.|.-
T Consensus        47 ~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~   95 (332)
T PRK09435         47 DALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPS   95 (332)
T ss_pred             HHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCC
Confidence            3333445678999999999999999999988766   3  567888873

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=96.72  E-value=0.00097  Score=72.26  Aligned_cols=36  Identities=33%  Similarity=0.623  Sum_probs=33.0

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCccccccc--ccch
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLES--YFKS  554 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Dd--fy~~  554 (818)
                      +|.|+||+|||||++|..|++.++..+||+|+  +|+.
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~   38 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKG   38 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeee
Confidence            47899999999999999999999999999998  5765

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.67  E-value=0.0014  Score=61.68  Aligned_cols=33  Identities=30%  Similarity=0.596  Sum_probs=27.6

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCccccccccc
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF  552 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy  552 (818)
                      |.|.||+|+||||+++.+++.++.+++.+|...
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~   33 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSE   33 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTH
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccccccc
Confidence            568999999999999999999997776655443

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>COG3025 Uncharacterized conserved protein [Function unknown]

Probab=96.66  E-value=0.0019  Score=72.09  Aligned_cols=118  Identities=14%  Similarity=0.078  Sum_probs=85.5

Q ss_pred             ccccceeeccCCCCCcchhhhccCCeeeEeeeCCEEEEEEcceeecCCCcccCceeEEEEec--cHH------------H
Q 003460          257 EAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR--MTL------------G  322 (818)
Q Consensus       257 ~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v--~~~------------~  322 (818)
                      ....++|||.|.+.++..+-.+     |||+.++++.+|.|-.=-+.+|+  -.|.|+++.+  ...            .
T Consensus        34 ~~L~n~YyDTpd~~L~~~~~gL-----RIR~~~~~y~~TlKtaG~v~gGl--H~RpEyn~~L~~~~~~~~~~p~~~~p~~  106 (432)
T COG3025          34 QQLANIYYDTPDNWLRRHDMGL-----RIRREGGQYEQTLKTAGGVVGGL--HQRPEYNVPLPEDTLDLAELPRDRWPAG  106 (432)
T ss_pred             hhHhhhhcCCchHHHHhCCceE-----EEeccCCeEEEEEEecCcccccc--ccCccccccCCCCCcchhhChhhhcccc
Confidence            3456999999999999999999     99999999999999432223343  6799999999  111            1


Q ss_pred             H---HHhcCCceeEEEEEEEEEEEe--C--CEEEEEeccC----CCCCCeEEEEec----CHHHHHHHHHHcCC
Q 003460          323 G---LLDLGYSVVASYKRASTYVVY--G--NLSVSFETID----TLDETFMVLRGT----NRKTVGAEALRMGI  381 (818)
Q Consensus       323 ~---L~~LGf~~~~~~~K~R~~~~~--~--~~~i~lD~v~----~lg~~fvEiE~~----~~~~i~~~~~~Lgl  381 (818)
                      +   ....-..|+++.+=.|+.|..  |  .++|.||...    +.-.|+-|||-.    +...+.++++.|-.
T Consensus       107 ~~~~~~~~~L~PlFstdf~R~~w~v~~g~s~iEvALD~G~v~Age~q~picElElELKsG~~~aL~~la~~L~~  180 (432)
T COG3025         107 IFPLDLGSELQPLFSTDFKREKWLVALGGSVIEVALDQGKVKAGERQEPICELELELKSGTPQALLALARTLAE  180 (432)
T ss_pred             cCCcccccccccceeeeeeeeeeeeecCCeEEEEEecccccccCcccCchhheehhhhcCCHHHHHHHHHHHHH
Confidence            1   123345788999999999975  3  6788899874    555667677654    55666666666543

>TIGR00318 cyaB adenylyl cyclase CyaB, putative

Probab=96.65  E-value=0.0018  Score=65.17  Aligned_cols=86  Identities=19%  Similarity=0.295  Sum_probs=69.6

Q ss_pred             ccceeeecCCCCCCCCCCCCCCeEEEEEeCceeEEEEecccccCCceeccccceEEe--hhhHHHHHhhhhHHHHHHhhh
Q 003460          729 NFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGNFIIQPKVDFDIS--ISTVAGLLNLGYQAVAYIEAS  806 (818)
Q Consensus       729 ~y~~~Yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~l~~~g~~~~~~~~~~  806 (818)
                      ...+.|+-.|+-.   ....+.|||+|+.+|++.|.+-.|..++.+.+++.++++|+  -.+...|.+|||+.++.++..
T Consensus        32 ~q~D~Yfd~p~~~---l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E~e~~v~d~~~~~~iL~~LG~~~~~~v~K~  108 (174)
T TIGR00318        32 FQHDIYFSNPCRD---FASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKEIEFKIEDIENALQILKKLGFKKVYEVIKK  108 (174)
T ss_pred             ceEEEeecCCCcc---hhhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEEEEEEECCHHHHHHHHHHCCCeEEEEEEEE
Confidence            4557776666422   23456799999999999999999999999999999999995  667778889999999888888


Q ss_pred             heeeecceEEe
Q 003460          807 AFIYQDGKVRL  817 (818)
Q Consensus       807 ~~~~~~~~~~~  817 (818)
                      ..+|..+.++|
T Consensus       109 R~~~~l~~~~i  119 (174)
T TIGR00318       109 RRIYQTNELNV  119 (174)
T ss_pred             EEEEEECCEEE
Confidence            88888776544

The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).

>PRK07933 thymidylate kinase; Validated

Probab=96.63  E-value=0.0045  Score=64.44  Aligned_cols=25  Identities=32%  Similarity=0.609  Sum_probs=22.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      ++|+|-|+.||||||+++.|++.|.
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~   25 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALE   25 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3699999999999999999999883

>PLN02772 guanylate kinase

Probab=96.63  E-value=0.013  Score=65.86  Aligned_cols=26  Identities=35%  Similarity=0.477  Sum_probs=22.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ...+|.|+||||||||||.+.|.+.+
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~  159 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEF  159 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhc
Confidence            45689999999999999999997754

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=96.58  E-value=0.011  Score=62.24  Aligned_cols=39  Identities=33%  Similarity=0.463  Sum_probs=33.4

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCC---eEEeccceec
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGC---TLISMENYRV   98 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~---~vI~~D~~~~   98 (818)
                      ....+|.+.|++|||||+||+.||+.||.   +-+.+|+.|.
T Consensus        69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyv  110 (393)
T KOG3877|consen   69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYV  110 (393)
T ss_pred             ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceee
Confidence            45789999999999999999999999995   4467888754

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.57  E-value=0.0016  Score=66.97  Aligned_cols=38  Identities=29%  Similarity=0.559  Sum_probs=32.8

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccch
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKS  554 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~  554 (818)
                      |.+|.+.||+|+||||.+.+|+..+.     +.++++|.|--.
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~g   43 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIG   43 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCcc
Confidence            78999999999999999999998772     668899888654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=96.57  E-value=0.0025  Score=65.33  Aligned_cols=40  Identities=35%  Similarity=0.492  Sum_probs=30.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--ecccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVD  101 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~  101 (818)
                      |.++.|.||+|+|||.+|-.||+.+|++||+.|.+  |.++.
T Consensus         1 M~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~   42 (233)
T PF01745_consen    1 MKVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELS   42 (233)
T ss_dssp             -EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGT
T ss_pred             CcEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccc
Confidence            56899999999999999999999999999999996  66543

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=96.52  E-value=0.006  Score=65.50  Aligned_cols=55  Identities=11%  Similarity=0.055  Sum_probs=34.8

Q ss_pred             EEEEEEcChhHHHHHHHhcCccccCcccchh-hHHHhhcchhhhhccccCCcccEEEeCC
Q 003460          631 LWIAVVGGVHSHLISRVQRDKSRMGCFMSQN-DIMMTVFPMFQQHIEPHLVHAHLKIRND  689 (818)
Q Consensus       631 ~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~-~~~~~v~p~~~~~I~p~~~~ADivI~n~  689 (818)
                      ..+|++++.++-+.|.-.-.   |.+.+... ...+. ...+.+.++|-++.||+||+.+
T Consensus        84 ~ilFLdA~d~~LirRy~eTR---R~HPL~~~~~~le~-I~~Er~~L~~lr~~Ad~vIDTs  139 (284)
T PF03668_consen   84 RILFLDASDEVLIRRYSETR---RRHPLSSDGSLLEA-IEKERELLEPLRERADLVIDTS  139 (284)
T ss_pred             EEEEEECChHHHHHHHHhcc---CCCCCCCCCCcHHH-HHHHHHHHHHHHHhCCEEEECC
Confidence            46799999988777764321   22223221 11222 3356677788899999999976

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=96.50  E-value=0.0078  Score=62.95  Aligned_cols=39  Identities=38%  Similarity=0.630  Sum_probs=33.9

Q ss_pred             cCCCCEEEeeeCCCCccHHHHHHHHHHHhCCc-ccccccc
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCE-VVSLESY  551 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~-vis~Ddf  551 (818)
                      +...|.||.|.|+||.||||+|..||..||.. +++.|..
T Consensus        85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~I  124 (299)
T COG2074          85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSI  124 (299)
T ss_pred             ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHH
Confidence            45679999999999999999999999999954 7777754

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.45  E-value=0.0054  Score=58.90  Aligned_cols=44  Identities=20%  Similarity=0.273  Sum_probs=32.3

Q ss_pred             HHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCe-EEeccce
Q 003460           53 QELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCT-LISMENY   96 (818)
Q Consensus        53 ~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~-vI~~D~~   96 (818)
                      +.+.+.-+...+|++.|..|||||||++.+++.+|+. .+++--|
T Consensus        13 ~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPTf   57 (133)
T TIGR00150        13 KAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSPTF   57 (133)
T ss_pred             HHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCCcccCCCe
Confidence            3333444556689999999999999999999999853 3444443

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PLN02924 thymidylate kinase

Probab=96.45  E-value=0.018  Score=60.28  Aligned_cols=28  Identities=25%  Similarity=0.293  Sum_probs=25.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      ....+|+|.|+.||||||+++.|++.|.
T Consensus        14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~   41 (220)
T PLN02924         14 SRGALIVLEGLDRSGKSTQCAKLVSFLK   41 (220)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3457899999999999999999999885

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=96.45  E-value=0.023  Score=59.79  Aligned_cols=59  Identities=14%  Similarity=0.007  Sum_probs=38.3

Q ss_pred             EEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhhccCCccccCcEEEECCCCC
Q 003460          171 IRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVS  229 (818)
Q Consensus       171 ~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~~Iep~~~~ADiII~N~~~~  229 (818)
                      -.+|++|+.++-+.|.-.-....--+.......-...++++++|.+..||.||+.+..+
T Consensus        85 ~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~~vIDTs~ls  143 (286)
T COG1660          85 RVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLREIADLVIDTSELS  143 (286)
T ss_pred             eEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHHHhhhEeecccCC
Confidence            34799999999877775433222212222122334567778899999999999988533

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.44  E-value=0.0028  Score=65.15  Aligned_cols=38  Identities=42%  Similarity=0.749  Sum_probs=32.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceecc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVG   99 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~   99 (818)
                      |.+|++.||+|+||||.+.+||..+   |  +.++++|.|+-+
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~g   43 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIG   43 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCcc
Confidence            5789999999999999999999876   2  678999988653

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.43  E-value=0.0044  Score=59.54  Aligned_cols=30  Identities=27%  Similarity=0.410  Sum_probs=26.1

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGC  543 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~  543 (818)
                      .....+|.+.|+.|||||||++.+++.+|.
T Consensus        19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~   48 (133)
T TIGR00150        19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLGI   48 (133)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            344568999999999999999999999984

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.43  E-value=0.0025  Score=63.04  Aligned_cols=32  Identities=34%  Similarity=0.544  Sum_probs=23.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV   98 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~   98 (818)
                      .|+|+|++|||||||++.|++. |+.++  ..+.+
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar   32 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAR   32 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHH
Confidence            3899999999999999999998 98888  55544

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.40  E-value=0.0055  Score=58.05  Aligned_cols=32  Identities=25%  Similarity=0.320  Sum_probs=26.8

Q ss_pred             HhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460           57 EKKGGIVTVGIGGPSGSGKTSLAEKLASVIGC   88 (818)
Q Consensus        57 ~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~   88 (818)
                      +.-++..+|.+.|.-|||||||++.+++.+|.
T Consensus        10 ~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~   41 (123)
T PF02367_consen   10 QILKPGDVILLSGDLGAGKTTFVRGLARALGI   41 (123)
T ss_dssp             HHHSS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred             HhCCCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            34466689999999999999999999999974

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=96.36  E-value=0.069  Score=52.52  Aligned_cols=151  Identities=17%  Similarity=0.184  Sum_probs=79.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCe-EEeccceecccccC-----CCCCcccHHHHHHHHHhhhcCC-cccc--ccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCT-LISMENYRVGVDEG-----NDLDSIDFDALVQNLQDLTEGK-DTLI--PMF  132 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~-vI~~D~~~~~~~~~-----~~~~~~d~~~l~~~L~~l~~~~-~i~~--p~~  132 (818)
                      -.+|.+.|||||||-||...+...+... -++.  .++-+...     .+-++.+...+.+.-.   .|. .+.+  -..
T Consensus         5 G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~f--vrRvITRpa~ag~EdH~avs~~eF~~~a~---~g~FAlsWqAhGL   79 (192)
T COG3709           5 GRLIAVVGPSGAGKDTLLDAARARLAGRPRLHF--VRRVITRPADAGGEDHDALSEAEFNTRAG---QGAFALSWQAHGL   79 (192)
T ss_pred             ceEEEEECCCCCChHHHHHHHHHHhccCCceEE--EEEEecccCCCCcccccccCHHHHHHHhh---cCceeEEehhcCc
Confidence            3679999999999999999998877321 0100  01111111     1223333332222111   110 0000  001


Q ss_pred             hhhhhccccccccccCCccEEEEEecccchhhhhcCC-C-EEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhh
Q 003460          133 DYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLL-D-IRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRK  210 (818)
Q Consensus       133 d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~-D-~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~  210 (818)
                      .+.....+.   .......+||+.|.-+..+..+..+ + .++.|.+++++-.+|...|-.   .+.+++..+.......
T Consensus        80 ~Ygip~eId---~wl~~G~vvl~NgSRa~Lp~arrry~~Llvv~ita~p~VLaqRL~~RGR---Es~eeI~aRL~R~a~~  153 (192)
T COG3709          80 SYGIPAEID---LWLAAGDVVLVNGSRAVLPQARRRYPQLLVVCITASPEVLAQRLAERGR---ESREEILARLARAARY  153 (192)
T ss_pred             cccCchhHH---HHHhCCCEEEEeccHhhhHHHHHhhhcceeEEEecCHHHHHHHHHHhcc---CCHHHHHHHHHhhccc
Confidence            111111111   1123456899999999887666433 3 568899999999888888863   4566666655433332


Q ss_pred             ccCCccccCcE-EEECCC
Q 003460          211 HIEPDLHHAQI-RINNRF  227 (818)
Q Consensus       211 ~Iep~~~~ADi-II~N~~  227 (818)
                      -    ..-.|+ .|+|+-
T Consensus       154 ~----~~~~dv~~idNsG  167 (192)
T COG3709         154 T----AGPGDVTTIDNSG  167 (192)
T ss_pred             c----cCCCCeEEEcCCC
Confidence            1    123454 456653

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.36  E-value=0.0031  Score=63.37  Aligned_cols=28  Identities=29%  Similarity=0.396  Sum_probs=24.8

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      ..+.+++|+|++|||||||++.|...+.
T Consensus         4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          4 TMIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence            4577999999999999999999998774

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=96.34  E-value=0.012  Score=71.10  Aligned_cols=40  Identities=23%  Similarity=0.259  Sum_probs=33.9

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccc
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK  553 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~  553 (818)
                      ..+|.+|.++|.+||||||+|+.|++.|+     +.+++.|++..
T Consensus       457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~  501 (632)
T PRK05506        457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRH  501 (632)
T ss_pred             CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhh
Confidence            34689999999999999999999999873     46788888765

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=96.32  E-value=0.022  Score=59.05  Aligned_cols=59  Identities=8%  Similarity=-0.056  Sum_probs=36.7

Q ss_pred             CCCEEEEEEcCHHHHHHHHHHhccC-CCcCHH--HHHHhhchhhhhccCCccccCcEEEECCC
Q 003460          168 LLDIRVAVVGGVHFSLISKVQYDIG-DSCSLD--SLIDSIFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       168 ~~D~~I~Vda~~e~~l~Rri~Rd~~-~~~s~e--~~~~~~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      .-|+++|+|+++++.++|...|... .+-..+  .+.+.+...|.+....... .=++|+++.
T Consensus       127 ~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~~~~f~~kvr~~Y~~la~~~~~-r~~vIda~~  188 (208)
T COG0125         127 KPDLTLYLDVPPEVALERIRKRGELRDRFEKEDDEFLEKVREGYLELAAKFPE-RIIVIDASR  188 (208)
T ss_pred             CCCEEEEEeCCHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHhhCCC-eEEEEECCC
Confidence            4599999999999999999998755 442222  2455555566654422222 124455553

>PRK07933 thymidylate kinase; Validated

Probab=96.30  E-value=0.013  Score=60.94  Aligned_cols=49  Identities=8%  Similarity=-0.017  Sum_probs=33.4

Q ss_pred             cCCEEEEEEcChhHHHHHHHhcCccccC---cccch-hhHHHhhcchhhhhcc
Q 003460          628 SLDLWIAVVGGVHSHLISRVQRDKSRMG---CFMSQ-NDIMMTVFPMFQQHIE  676 (818)
Q Consensus       628 ~~D~~I~v~~~~d~rl~Rri~Rd~~~rg---~~~~~-~~~~~~v~p~~~~~I~  676 (818)
                      .-|+.||++.+.+..+.|.-.|.....+   ...+. ..|...++..|..+..
T Consensus       132 ~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E~~~~f~~~v~~~Y~~~~~  184 (213)
T PRK07933        132 VPDLQVLLDVPVELAAERARRRAAQDADRARDAYERDDGLQQRTGAVYAELAA  184 (213)
T ss_pred             CCCEEEEecCCHHHHHHHHHhhccccCCcccccccccHHHHHHHHHHHHHHHH
Confidence            3699999999999999998777532111   11221 3677778888887754

>smart00763 AAA_PrkA PrkA AAA domain

Probab=96.29  E-value=0.006  Score=67.83  Aligned_cols=28  Identities=29%  Similarity=0.355  Sum_probs=25.3

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      .+..++++.||+||||||+|+.|+..++
T Consensus        76 ~~r~il~L~GPPGsGKStla~~La~~l~  103 (361)
T smart00763       76 ERKQILYLLGPVGGGKSSLVECLKRGLE  103 (361)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3568899999999999999999999885

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=96.28  E-value=0.006  Score=67.86  Aligned_cols=44  Identities=23%  Similarity=0.250  Sum_probs=32.3

Q ss_pred             hhHHHHHHHHHHHHh-cCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           44 GYYLLVKSIQELREK-KGGIVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        44 ~~~~l~~~i~~~~~~-~~~~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      ....++..++..... ..+..+++|.||+||||||+|+.|+..++
T Consensus        59 ~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~  103 (361)
T smart00763       59 AIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE  103 (361)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            444455555544432 34568899999999999999999999774

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.28  E-value=0.0032  Score=62.16  Aligned_cols=23  Identities=39%  Similarity=0.804  Sum_probs=20.7

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHh
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      .|+|+||||||||||-+.++...
T Consensus        31 ~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          31 FIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             eEEEeCCCCccHHHHHHHHHhcc
Confidence            58999999999999999999843

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=96.23  E-value=0.0037  Score=68.05  Aligned_cols=39  Identities=41%  Similarity=0.730  Sum_probs=35.5

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc--cch
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKS  554 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf--y~~  554 (818)
                      .+.+|.|.||+|||||-+|-.|++.+|..+||+|+.  |+.
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~   42 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRG   42 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCC
Confidence            367899999999999999999999999999999987  654

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=96.16  E-value=0.0049  Score=70.47  Aligned_cols=39  Identities=38%  Similarity=0.500  Sum_probs=34.7

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCc-ccccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCE-VVSLESYFK  553 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~-vis~Ddfy~  553 (818)
                      .+|.+|.+.|++||||||+|..|+..+|.. +++.|.+-.
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~  292 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVRE  292 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHH
Confidence            469999999999999999999999999976 778887643

>PHA03132 thymidine kinase; Provisional

Probab=96.15  E-value=0.041  Score=64.93  Aligned_cols=30  Identities=23%  Similarity=0.442  Sum_probs=25.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEE
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLI   91 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI   91 (818)
                      .++|.|-|+.||||||+++.|++.+|..++
T Consensus       257 ~~fIv~EGidGsGKTTlik~L~e~lg~~Vi  286 (580)
T PHA03132        257 ACFLFLEGVMGVGKTTLLNHMRGILGDNVL  286 (580)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHhCCceE
Confidence            678999999999999999999998854433

>PRK13976 thymidylate kinase; Provisional

Probab=96.15  E-value=0.022  Score=59.14  Aligned_cols=25  Identities=32%  Similarity=0.470  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      +.|+|-|.-||||||+++.|++.|.
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~   25 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLS   25 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3689999999999999999999874

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.11  E-value=0.0056  Score=60.05  Aligned_cols=27  Identities=33%  Similarity=0.417  Sum_probs=24.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      .++.|+|+|++|+||||++..+++.|.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~   30 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLR   30 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence            457899999999999999999998873

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.11  E-value=0.0055  Score=61.57  Aligned_cols=28  Identities=36%  Similarity=0.411  Sum_probs=24.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      ..+.+|+|+|++|||||||++.|...|.
T Consensus         4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          4 TMIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence            3567999999999999999999987773

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.09  E-value=0.0069  Score=59.84  Aligned_cols=23  Identities=48%  Similarity=0.787  Sum_probs=20.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHh
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .|+|+||||||||||.+.+|...
T Consensus        31 ~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          31 FIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             eEEEeCCCCccHHHHHHHHHhcc
Confidence            49999999999999999998743

>COG2954 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.06  E-value=0.011  Score=56.16  Aligned_cols=93  Identities=14%  Similarity=0.039  Sum_probs=68.9

Q ss_pred             eeEeeeCCEEEEEEcceeecCCCcccCceeEEEEeccHHHHHHhcCCceeEEEEEEEEEEEeCCEEEEEeccCCC--CCC
Q 003460          283 IKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTL--DET  360 (818)
Q Consensus       283 lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v~~~~~L~~LGf~~~~~~~K~R~~~~~~~~~i~lD~v~~l--g~~  360 (818)
                      +|||..|.+.+||.||..   .+   -+|.|||-.+-+....+-|-+.+...++|+|.....+|.+-.+|...|-  |=.
T Consensus        39 VRVRi~g~~A~LTiK~~~---~~---~~R~EfEY~iPl~DA~e~l~~~~g~~IEK~R~~v~~~G~~wEVDvF~G~n~gLv  112 (156)
T COG2954          39 VRVRIVGDRAYLTIKGGA---SG---LSRSEFEYEIPLADAEEMLTTACGRVIEKTRYPVRHGGFLWEVDVFLGDNAGLV  112 (156)
T ss_pred             EEEEEecceEEEEEEccc---cc---eeeeeeeecccccCHHHHHHHhcchheeeeEeeeeeCCEEEEEeeecCcccceE
Confidence            499999999999999655   33   5899999999444444444445566899999999999999999999643  333


Q ss_pred             eEEEEecCHHHHHHHHHHcCC
Q 003460          361 FMVLRGTNRKTVGAEALRMGI  381 (818)
Q Consensus       361 fvEiE~~~~~~i~~~~~~Lgl  381 (818)
                      -.|+|-.++.+-..+-.-||-
T Consensus       113 vAEvEl~~e~~~~~lP~WLGr  133 (156)
T COG2954         113 VAEVELPDENADFDLPDWLGR  133 (156)
T ss_pred             EEEEEcCccccCCcCccccCc
Confidence            578887766555555555654

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.05  E-value=0.0041  Score=61.52  Aligned_cols=32  Identities=34%  Similarity=0.522  Sum_probs=23.1

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      |+|+|++|||||||++.|++. |+.++  ..+.+.
T Consensus         2 I~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~   33 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR-GYPVV--PEYARE   33 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHH
Confidence            789999999999999999998 87766  555554

>PRK13974 thymidylate kinase; Provisional

Probab=95.99  E-value=0.032  Score=57.93  Aligned_cols=26  Identities=23%  Similarity=0.298  Sum_probs=23.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      ..+|++-|+.||||||.++.|++.+.
T Consensus         3 g~~i~~eG~dGsGKsT~~~~l~~~l~   28 (212)
T PRK13974          3 GKFIVLEGIDGCGKTTQIDHLSKWLP   28 (212)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            36899999999999999999999874

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=95.99  E-value=0.0053  Score=66.97  Aligned_cols=37  Identities=27%  Similarity=0.458  Sum_probs=32.6

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc--cch
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKS  554 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf--y~~  554 (818)
                      +.+|.|+||+|||||.||-.|+.. +..+||.|..  |+.
T Consensus         4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~   42 (300)
T PRK14729          4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKE   42 (300)
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCC
Confidence            348899999999999999999999 5699999987  665

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.97  E-value=0.018  Score=62.32  Aligned_cols=36  Identities=33%  Similarity=0.524  Sum_probs=29.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG   99 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~   99 (818)
                      ..+|.+.||+|+||||||++||+.|.+.  ..|.|+++
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLSIR--~~~~y~~~  212 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLSIR--TNDRYYKG  212 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhheee--ecCccccc
Confidence            4679999999999999999999988655  44556553

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=95.95  E-value=0.0095  Score=56.46  Aligned_cols=29  Identities=24%  Similarity=0.403  Sum_probs=25.5

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      .+..-+|.+.|+-|||||||++.++..+|
T Consensus        12 l~~g~vi~L~GdLGaGKTtf~r~l~~~lg   40 (123)
T PF02367_consen   12 LKPGDVILLSGDLGAGKTTFVRGLARALG   40 (123)
T ss_dssp             HSS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence            34567899999999999999999999997

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK06761 hypothetical protein; Provisional

Probab=95.94  E-value=0.0098  Score=64.35  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=27.0

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCccccccc
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES  550 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Dd  550 (818)
                      .+|.|+|++||||||+++.|++.++...++.+.
T Consensus         4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~   36 (282)
T PRK06761          4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL   36 (282)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence            478999999999999999999998754444444

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=95.92  E-value=0.0087  Score=65.04  Aligned_cols=38  Identities=37%  Similarity=0.628  Sum_probs=31.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh----C---CeEEeccceec
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI----G---CTLISMENYRV   98 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L----g---~~vI~~D~~~~   98 (818)
                      ++.+|+|+||+||||||++..|+..+    |   +.+|++|.|+-
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~  237 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI  237 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence            45799999999999999999998755    3   46789988653

>PRK10646 ADP-binding protein; Provisional

Probab=95.90  E-value=0.018  Score=56.57  Aligned_cols=35  Identities=20%  Similarity=0.385  Sum_probs=28.4

Q ss_pred             HHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460           54 ELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGC   88 (818)
Q Consensus        54 ~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~   88 (818)
                      .+.+.-+...+|.+.|.-|||||||++.+++.||+
T Consensus        20 ~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~   54 (153)
T PRK10646         20 RVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH   54 (153)
T ss_pred             HHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            33333445568999999999999999999999985

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=95.90  E-value=0.0073  Score=68.91  Aligned_cols=38  Identities=29%  Similarity=0.391  Sum_probs=32.4

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cccccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYF  552 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddfy  552 (818)
                      ++|.+|+++|++||||||++..|+..+   |  +.++++|.|-
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R  140 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR  140 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence            458999999999999999999999877   3  5678888665

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=95.88  E-value=0.0062  Score=56.64  Aligned_cols=26  Identities=50%  Similarity=0.663  Sum_probs=23.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGC   88 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~   88 (818)
                      ..+.|.|++||||||+++.|+..++.
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            46899999999999999999998753

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK06761 hypothetical protein; Provisional

Probab=95.88  E-value=0.0078  Score=65.12  Aligned_cols=34  Identities=29%  Similarity=0.388  Sum_probs=28.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY   96 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~   96 (818)
                      .+|.|+|++||||||+++.|++.++..-++.+.+
T Consensus         4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~   37 (282)
T PRK06761          4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELY   37 (282)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEE
Confidence            5799999999999999999999987544444444

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=95.86  E-value=0.03  Score=58.03  Aligned_cols=159  Identities=14%  Similarity=0.117  Sum_probs=80.8

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------hhc--ccC---CCccc------ccHHH-HH
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------VKD--FKY---DDFSS------LDLSL-LS  574 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~---------~~~--~~~---d~p~t------~D~~l-l~  574 (818)
                      ..++|.|-|.-||||||.++.|++.|...-+   +.+.+.+         .+.  .+.   .+|.+      -|... +.
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~---~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~   78 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGI---KVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLE   78 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCC---eEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999998842211   1112111         111  110   01111      11111 22


Q ss_pred             HHHH-HHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhh---cCCEEEEEEcChhHHHHHHHhcC
Q 003460          575 KNIS-DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRK---SLDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       575 ~~L~-~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~---~~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                      +.+. .+..|..|-..+|..+.--..+.     ...   +-++....++ ....   .-|+++|++.+.+..++|...|.
T Consensus        79 ~~i~pal~~g~vVI~DRy~~Ss~AYQg~-----~~~---~~~~~~~~l~-~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~  149 (208)
T COG0125          79 EVIKPALKEGKVVICDRYVDSSLAYQGG-----GRG---LDLDWVLALN-EFAPGGLKPDLTLYLDVPPEVALERIRKRG  149 (208)
T ss_pred             HHHHHhhcCCCEEEECCcccHHHHhhhh-----ccC---CCHHHHHHHH-HhccCCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence            2222 24456666666666664211100     000   0000000111 1111   45899999999999999998886


Q ss_pred             ccccCcccch--hhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460          651 KSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRND  689 (818)
Q Consensus       651 ~~~rg~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n~  689 (818)
                      .. .+ ..+.  ..+...++..|..+...... .=++|+.+
T Consensus       150 ~~-~~-r~E~~~~~f~~kvr~~Y~~la~~~~~-r~~vIda~  187 (208)
T COG0125         150 EL-RD-RFEKEDDEFLEKVREGYLELAAKFPE-RIIVIDAS  187 (208)
T ss_pred             Cc-cc-hhhhHHHHHHHHHHHHHHHHHhhCCC-eEEEEECC
Confidence            44 11 1222  23667777788777554322 22455554

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=95.85  E-value=0.0095  Score=55.00  Aligned_cols=33  Identities=36%  Similarity=0.294  Sum_probs=25.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY   96 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~   96 (818)
                      ..+++|.|+|||||||+++.+.  -|...+..|+.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di   47 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI--KRKHRLVGDDN   47 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeH
Confidence            4679999999999999999986  34444555554

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=95.85  E-value=0.0058  Score=59.00  Aligned_cols=24  Identities=33%  Similarity=0.631  Sum_probs=21.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      +|+|.||+||||||+++.|++.+.
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCC
Confidence            478999999999999999998764

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=95.84  E-value=0.0079  Score=60.36  Aligned_cols=27  Identities=33%  Similarity=0.487  Sum_probs=23.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCe
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCT   89 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~   89 (818)
                      .+|.|+|++||||||+|..|+..++..
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~~~   28 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSGLQ   28 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcCCC
Confidence            368999999999999999999887643

>TIGR00101 ureG urease accessory protein UreG

Probab=95.83  E-value=0.0079  Score=61.94  Aligned_cols=36  Identities=33%  Similarity=0.675  Sum_probs=27.9

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhC----Cccccccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVG----CEVVSLESYF  552 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg----~~vis~Ddfy  552 (818)
                      |+.|+|+|++||||||+.+.+...+.    +.++..|-++
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~   40 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYT   40 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCC
Confidence            67899999999999999999988753    3445544444

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=95.82  E-value=0.0064  Score=56.53  Aligned_cols=25  Identities=48%  Similarity=0.741  Sum_probs=22.5

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      ..+.|.||+||||||+++.|+..++
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccC
Confidence            4688999999999999999998875

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=95.82  E-value=0.02  Score=59.80  Aligned_cols=42  Identities=24%  Similarity=0.475  Sum_probs=33.7

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceeccc
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGV  100 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~  100 (818)
                      ..++.+|...|.||.|||++|+.|+..|   |  +.+++.++|.+..
T Consensus         9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~   55 (222)
T PF01591_consen    9 HAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKL   55 (222)
T ss_dssp             ----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecc
Confidence            4568999999999999999999999876   3  6899999997743

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.80  E-value=0.021  Score=61.34  Aligned_cols=88  Identities=19%  Similarity=0.373  Sum_probs=55.6

Q ss_pred             hHHHHHHhhcCCccccccCCCCCC----------CCccccccCCcc-cccch-hhHHHHHHHHHHHHhcCCcEEEEEeCC
Q 003460            3 DGVVQRVFEEGGRDYFQQQPSTSS----------SSPSILQSLPVH-ASFDH-GYYLLVKSIQELREKKGGIVTVGIGGP   70 (818)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~p~~~~----------~~~~~~~~~~~~-~s~~~-~~~~l~~~i~~~~~~~~~~~iIgI~G~   70 (818)
                      ++--+++-+.+--||.+.-|...-          ..+-.++..|.. .+|+. +...++..+.     ....-+|.++||
T Consensus        59 ~~q~~~~~~~~E~Dfs~~~~~~~RfRvN~f~qr~~~a~vlR~Ip~~i~~~e~LglP~i~~~~~-----~~~~GLILVTGp  133 (353)
T COG2805          59 DDQRKILEENGELDFSYTLPGVARFRVNAFKQRGGYALVLRLIPSKIPTLEELGLPPIVRELA-----ESPRGLILVTGP  133 (353)
T ss_pred             HHHHHHHHHhcceeEEEecCCcceEEeehhhhcCCcEEEEeccCccCCCHHHcCCCHHHHHHH-----hCCCceEEEeCC
Confidence            344455666666688777665421          233444555543 34666 4445554433     234468999999


Q ss_pred             CCCcHHHHHHHHHHHhC----CeEEeccc
Q 003460           71 SGSGKTSLAEKLASVIG----CTLISMEN   95 (818)
Q Consensus        71 sGSGKSTlA~~La~~Lg----~~vI~~D~   95 (818)
                      +||||||....+-..+|    ..+|...|
T Consensus       134 TGSGKSTTlAamId~iN~~~~~HIlTIED  162 (353)
T COG2805         134 TGSGKSTTLAAMIDYINKHKAKHILTIED  162 (353)
T ss_pred             CCCcHHHHHHHHHHHHhccCCcceEEecC
Confidence            99999998877777775    56777766

>TIGR00750 lao LAO/AO transport system ATPase

Probab=95.80  E-value=0.011  Score=64.90  Aligned_cols=45  Identities=29%  Similarity=0.518  Sum_probs=34.9

Q ss_pred             HHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEecccee
Q 003460           53 QELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR   97 (818)
Q Consensus        53 ~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~   97 (818)
                      .........+.+|+|+|++||||||++..|+..+   |  +.+|+.|...
T Consensus        25 ~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~   74 (300)
T TIGR00750        25 DRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS   74 (300)
T ss_pred             HhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            3333445678999999999999999999998866   3  5678888643

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=95.79  E-value=0.0079  Score=59.03  Aligned_cols=39  Identities=23%  Similarity=0.349  Sum_probs=30.5

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      .+.-|+|+|++|+||||++.++++.|.-.-+..-.||-+
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~   42 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITP   42 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEee
Confidence            467799999999999999999999885333445556554

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=95.78  E-value=0.0091  Score=67.98  Aligned_cols=33  Identities=36%  Similarity=0.336  Sum_probs=28.4

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEe
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLIS   92 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~   92 (818)
                      ..+..|+|+|++|||||||++.|++.+|+..+.
T Consensus       217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~  249 (399)
T PRK08099        217 FFVRTVAILGGESSGKSTLVNKLANIFNTTSAW  249 (399)
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence            446789999999999999999999998876543

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=95.76  E-value=0.0069  Score=61.21  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=22.4

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      ++|.|.|+.||||||+++.|++.+
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l   24 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERL   24 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            378999999999999999999988

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=95.76  E-value=0.0083  Score=65.17  Aligned_cols=38  Identities=26%  Similarity=0.489  Sum_probs=31.3

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh----C---Ccccccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV----G---CEVVSLESYFK  553 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l----g---~~vis~Ddfy~  553 (818)
                      ++.+|++.||+||||||++..|+..+    |   +.++++|.|..
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~  237 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI  237 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence            46799999999999999999998765    2   45788888753

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=95.75  E-value=0.0062  Score=58.82  Aligned_cols=24  Identities=29%  Similarity=0.649  Sum_probs=21.2

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhC
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      +|+|.||+||||||+++.|++.+.
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCC
Confidence            378899999999999999998764

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.74  E-value=0.0066  Score=62.38  Aligned_cols=22  Identities=45%  Similarity=0.641  Sum_probs=19.4

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      -+|.|.||||||||||.+.|..
T Consensus        29 evv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          29 EVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
Confidence            4788899999999999998864

>TIGR00750 lao LAO/AO transport system ATPase

Probab=95.70  E-value=0.0093  Score=65.38  Aligned_cols=41  Identities=27%  Similarity=0.453  Sum_probs=33.4

Q ss_pred             HcCCCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cccccccccc
Q 003460          512 ENKGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYF  552 (818)
Q Consensus       512 ~~~~~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddfy  552 (818)
                      ...+.+.+|+|+|++|||||||+..|...+   |  +.++++|..+
T Consensus        29 ~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~   74 (300)
T TIGR00750        29 PYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS   74 (300)
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            345678999999999999999999998866   2  5578888654

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.69  E-value=0.0079  Score=62.81  Aligned_cols=25  Identities=44%  Similarity=0.514  Sum_probs=21.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      --.|+|.||||||||||.+.++...
T Consensus        31 Ge~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          31 GEFVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccc
Confidence            3479999999999999999998644

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=95.69  E-value=0.007  Score=63.21  Aligned_cols=24  Identities=46%  Similarity=0.666  Sum_probs=21.3

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.|+||||||||++.|+-..
T Consensus        34 e~lgivGeSGsGKSTL~r~l~Gl~   57 (252)
T COG1124          34 ETLGIVGESGSGKSTLARLLAGLE   57 (252)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhccc
Confidence            478999999999999999998644

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=95.69  E-value=0.028  Score=59.24  Aligned_cols=56  Identities=11%  Similarity=0.099  Sum_probs=37.6

Q ss_pred             EEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460          631 LWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRND  689 (818)
Q Consensus       631 ~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p~~~~ADivI~n~  689 (818)
                      ..+|++++.++-+.|...-   +|.+.+...+....-...+.++..|-+..||+||+..
T Consensus        85 ~iLFLeA~~~~Lv~RY~et---RR~HPL~~~~~l~~~I~~ERelL~pLk~~A~~vIDTs  140 (286)
T COG1660          85 RVLFLEADDETLVRRYSET---RRSHPLSEDGLLLEAIAKERELLAPLREIADLVIDTS  140 (286)
T ss_pred             eEEEEECchhHHHHHHhhh---hhcCCCCccCcHHHHHHHHHHHHHHHHHHhhhEeecc
Confidence            3568999988877776432   2444444333233334467778899999999999865

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.68  E-value=0.0074  Score=63.00  Aligned_cols=24  Identities=42%  Similarity=0.656  Sum_probs=21.1

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -+|+|.||||||||||.+.|....
T Consensus        32 e~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          32 EFVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            479999999999999999887644

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=95.66  E-value=0.012  Score=63.68  Aligned_cols=39  Identities=28%  Similarity=0.383  Sum_probs=32.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceec
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRV   98 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~   98 (818)
                      .++.+|+++|++|+||||++..||..+   |  +.++++|-|+.
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~  113 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA  113 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence            456899999999999999999999876   3  56688887644

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=95.66  E-value=0.021  Score=59.66  Aligned_cols=50  Identities=20%  Similarity=0.208  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHh-----CCeEEeccce
Q 003460           47 LLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENY   96 (818)
Q Consensus        47 ~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~L-----g~~vI~~D~~   96 (818)
                      .++..+............+.|.|++|+|||++|+.++..+     .+.++++.+.
T Consensus        27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~   81 (227)
T PRK08903         27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP   81 (227)
T ss_pred             HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence            3445555544433344568899999999999999998865     3556666554

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=95.65  E-value=0.011  Score=48.91  Aligned_cols=23  Identities=35%  Similarity=0.707  Sum_probs=20.8

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHh
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      +..|+|++||||||+..+++-.|
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999998765

>PRK00698 tmk thymidylate kinase; Validated

Probab=95.64  E-value=0.0099  Score=60.75  Aligned_cols=25  Identities=20%  Similarity=0.468  Sum_probs=23.1

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      ..+|.|.|++||||||+++.|++.+
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l   27 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELL   27 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999999987

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=95.63  E-value=0.0076  Score=63.82  Aligned_cols=29  Identities=28%  Similarity=0.613  Sum_probs=23.3

Q ss_pred             EeCCCCCcHHHHHHHHHHHhC-----CeEEeccc
Q 003460           67 IGGPSGSGKTSLAEKLASVIG-----CTLISMEN   95 (818)
Q Consensus        67 I~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~   95 (818)
                      |.||+||||||+++.+++.+.     +.+|++|.
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDP   34 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDP   34 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--T
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcch
Confidence            689999999999999999874     56888887

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=95.63  E-value=0.0084  Score=62.66  Aligned_cols=26  Identities=50%  Similarity=0.574  Sum_probs=22.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      +--++||.|.||||||||++.|+...
T Consensus        32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~   57 (252)
T COG1124          32 RGETLGIVGESGSGKSTLARLLAGLE   57 (252)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence            34579999999999999999998744

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=95.61  E-value=0.01  Score=61.66  Aligned_cols=32  Identities=19%  Similarity=0.324  Sum_probs=26.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeE-Eeccc
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTL-ISMEN   95 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~v-I~~D~   95 (818)
                      ++|||+|.+||||||+|+.+.+ .|..+ +++.+
T Consensus         1 miI~i~G~~gsGKstva~~~~~-~g~~~~~~~~d   33 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFIIE-NYNAVKYQLAD   33 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHh-cCCcEEEehhH
Confidence            3899999999999999999976 46666 77766

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.59  E-value=0.0089  Score=61.47  Aligned_cols=24  Identities=46%  Similarity=0.482  Sum_probs=20.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHH
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.-++.|+||||||||||.+.|..
T Consensus        27 ~Gevv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          27 KGEVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHC
Confidence            345799999999999999999954

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=95.57  E-value=0.053  Score=54.74  Aligned_cols=45  Identities=7%  Similarity=-0.113  Sum_probs=30.1

Q ss_pred             CCCEEEEEEcCHHHHHHHHHHhccCCC--cCHHHHHHhhchhhhhcc
Q 003460          168 LLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDSIFPLFRKHI  212 (818)
Q Consensus       168 ~~D~~I~Vda~~e~~l~Rri~Rd~~~~--~s~e~~~~~~~p~~~~~I  212 (818)
                      .-|+.+|++++++++++|...|+....  ....+...+....|.+..
T Consensus       118 ~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~~~~~~~~y~~l~  164 (186)
T PF02223_consen  118 KPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEYLRRVREAYLELA  164 (186)
T ss_dssp             E-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHH
Confidence            559999999999999999999987222  222334444445555533

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=95.56  E-value=0.014  Score=48.34  Aligned_cols=23  Identities=39%  Similarity=0.733  Sum_probs=20.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHh
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      +..|+|++||||||+..++.-.|
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999997755

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=95.55  E-value=0.011  Score=59.23  Aligned_cols=26  Identities=27%  Similarity=0.491  Sum_probs=23.1

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCE  544 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~  544 (818)
                      +|.|+|++||||||+|..++..++..
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~~~~   28 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQSGLQ   28 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHcCCC
Confidence            68899999999999999999887643

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=95.55  E-value=0.015  Score=66.43  Aligned_cols=39  Identities=33%  Similarity=0.457  Sum_probs=33.0

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceec
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRV   98 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~   98 (818)
                      .++.+|+++|++||||||++..||..+   |  +.++++|.|..
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~  141 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA  141 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence            347899999999999999999999876   4  57789998754

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=95.54  E-value=0.009  Score=55.17  Aligned_cols=22  Identities=50%  Similarity=0.505  Sum_probs=19.9

Q ss_pred             CEEEeeeCCCCccHHHHHHHHH
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMA  538 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~  538 (818)
                      --+++|.|+||||||||++.+.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            3678999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.48  E-value=0.015  Score=55.81  Aligned_cols=26  Identities=46%  Similarity=0.787  Sum_probs=23.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCeE
Q 003460           65 VGIGGPSGSGKTSLAEKLASVIGCTL   90 (818)
Q Consensus        65 IgI~G~sGSGKSTlA~~La~~Lg~~v   90 (818)
                      |.|.|++|+|||++++.+++.++..+
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~~~   27 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGRPV   27 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhcce
Confidence            67999999999999999999997554

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR00101 ureG urease accessory protein UreG

Probab=95.48  E-value=0.017  Score=59.56  Aligned_cols=35  Identities=37%  Similarity=0.692  Sum_probs=27.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhC----CeEEeccce
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIG----CTLISMENY   96 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg----~~vI~~D~~   96 (818)
                      |+.|+|+|+.||||||+.+.+...+.    +.++..|.+
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~   39 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIY   39 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcC
Confidence            57899999999999999999987653    345555543

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=95.47  E-value=0.012  Score=65.31  Aligned_cols=36  Identities=28%  Similarity=0.464  Sum_probs=32.0

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE  549 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D  549 (818)
                      -+.|.++||-||+|+|||.+|+.++..+|+..|.++
T Consensus       145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vs  180 (413)
T PLN00020        145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMS  180 (413)
T ss_pred             CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEE
Confidence            467999999999999999999999999998766554

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=95.47  E-value=0.033  Score=54.23  Aligned_cols=35  Identities=31%  Similarity=0.391  Sum_probs=29.2

Q ss_pred             HHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           53 QELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        53 ~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      +.+.+.-+..-+|.+.|.-|||||||++.+++.||
T Consensus        16 ~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg   50 (149)
T COG0802          16 ERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLG   50 (149)
T ss_pred             HHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence            33334456778999999999999999999999887

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=95.47  E-value=0.039  Score=64.79  Aligned_cols=33  Identities=36%  Similarity=0.503  Sum_probs=28.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISME   94 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D   94 (818)
                      +.-+.+.||+|+|||++|+.++..++++++..+
T Consensus        88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i~  120 (495)
T TIGR01241        88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS  120 (495)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHcCCCeeecc
Confidence            455899999999999999999999887766543

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=95.46  E-value=0.013  Score=60.29  Aligned_cols=34  Identities=41%  Similarity=0.613  Sum_probs=28.2

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY  551 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf  551 (818)
                      .++.|.||+|+|||.+|-.|++.+|.++|+.|..
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dri   35 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRI   35 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SG
T ss_pred             cEEEEECCCCCChhHHHHHHHHHhCCCEEEecce
Confidence            4788999999999999999999999999999987

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=95.45  E-value=0.021  Score=57.91  Aligned_cols=37  Identities=38%  Similarity=0.707  Sum_probs=30.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh----CCeEEeccceec
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI----GCTLISMENYRV   98 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L----g~~vI~~D~~~~   98 (818)
                      ++.|++.||+|||||||...+.+.|    ...||..|-|..
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~   53 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTK   53 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeech
Confidence            5899999999999999988876666    577888887754

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=95.43  E-value=0.019  Score=53.97  Aligned_cols=25  Identities=44%  Similarity=0.670  Sum_probs=22.0

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      ...+.|.|++|+||||+++.++..+
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3457789999999999999999887

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=95.43  E-value=0.013  Score=63.40  Aligned_cols=40  Identities=25%  Similarity=0.390  Sum_probs=32.3

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccccc
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFK  553 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddfy~  553 (818)
                      .+++.+|+++|++|+||||++..|+..+   |  +.++++|-|..
T Consensus        69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~  113 (272)
T TIGR00064        69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA  113 (272)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence            3457899999999999999999999876   3  55788887544

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=95.43  E-value=0.015  Score=64.16  Aligned_cols=38  Identities=29%  Similarity=0.371  Sum_probs=31.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEecccee
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR   97 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~   97 (818)
                      .++.+|++.||+||||||++..||..+   |  +.++++|-|.
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r  154 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR  154 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence            356899999999999999999999876   3  4567777654

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=95.43  E-value=0.012  Score=64.90  Aligned_cols=37  Identities=22%  Similarity=0.345  Sum_probs=29.9

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY  551 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddf  551 (818)
                      +++.+|++.||+||||||++..|+..+.     +.++.+|-|
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~  153 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF  153 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence            4578999999999999999999998772     445666654

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=95.41  E-value=0.025  Score=66.41  Aligned_cols=35  Identities=29%  Similarity=0.388  Sum_probs=29.6

Q ss_pred             hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEe
Q 003460           58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLIS   92 (818)
Q Consensus        58 ~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~   92 (818)
                      ......++.++||+||||||+.+.||+.+|..++.
T Consensus        41 ~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E   75 (519)
T PF03215_consen   41 GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE   75 (519)
T ss_pred             cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence            33445699999999999999999999999977654

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=95.40  E-value=0.0079  Score=63.71  Aligned_cols=28  Identities=32%  Similarity=0.642  Sum_probs=21.3

Q ss_pred             eeCCCCccHHHHHHHHHHHhC-----Ccccccc
Q 003460          522 IGGPSGSGKTSLAHKMANIVG-----CEVVSLE  549 (818)
Q Consensus       522 IsG~sGSGKTTla~~L~~~lg-----~~vis~D  549 (818)
                      |.||+||||||+++.+++.+.     +.++.+|
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD   33 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD   33 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence            579999999999999999874     3455555

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=95.39  E-value=0.015  Score=58.04  Aligned_cols=35  Identities=37%  Similarity=0.563  Sum_probs=29.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceec
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRV   98 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~   98 (818)
                      +++++|++||||||++..++..+   |  +.++++|.+..
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~   41 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP   41 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence            68999999999999999998866   4  46788887643

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.38  E-value=0.02  Score=64.32  Aligned_cols=38  Identities=29%  Similarity=0.463  Sum_probs=31.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEecccee
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR   97 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~   97 (818)
                      .++.+|++.|++||||||++..||..+   |  +.++++|.|.
T Consensus       239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R  281 (436)
T PRK11889        239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR  281 (436)
T ss_pred             cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence            345789999999999999999999766   2  5678888764

>PRK14974 cell division protein FtsY; Provisional

Probab=95.35  E-value=0.016  Score=64.32  Aligned_cols=39  Identities=31%  Similarity=0.497  Sum_probs=30.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceec
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRV   98 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~   98 (818)
                      .++.+|+++|++||||||++..|+..+   |  +.++++|-|..
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~  181 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA  181 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH
Confidence            457899999999999999988888765   3  44577776643

>PRK09087 hypothetical protein; Validated

Probab=95.34  E-value=0.027  Score=59.17  Aligned_cols=34  Identities=35%  Similarity=0.407  Sum_probs=30.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY   96 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~   96 (818)
                      ..+.|.|++|||||+|++.+++..++.+++.+++
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~   78 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEI   78 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHc
Confidence            4589999999999999999998888888888665

>PRK14974 cell division protein FtsY; Provisional

Probab=95.34  E-value=0.014  Score=64.89  Aligned_cols=38  Identities=32%  Similarity=0.580  Sum_probs=29.4

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccc
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESY  551 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddf  551 (818)
                      .++|.+|+++|++||||||++..|+..+   |  +.++..|-|
T Consensus       137 ~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~  179 (336)
T PRK14974        137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF  179 (336)
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence            3468999999999999999999988766   2  335555544

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=95.33  E-value=0.029  Score=52.67  Aligned_cols=26  Identities=35%  Similarity=0.523  Sum_probs=23.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ....+.|.|++|+||||+++.++..+
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            34578899999999999999999877

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK10646 ADP-binding protein; Provisional

Probab=95.32  E-value=0.026  Score=55.53  Aligned_cols=30  Identities=20%  Similarity=0.329  Sum_probs=26.2

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGC  543 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~  543 (818)
                      ....-+|.+.|.-|||||||++.|++.||+
T Consensus        25 l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~   54 (153)
T PRK10646         25 CDGATVIYLYGDLGAGKTTFSRGFLQALGH   54 (153)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            344568999999999999999999999984

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=95.31  E-value=0.017  Score=57.39  Aligned_cols=25  Identities=48%  Similarity=0.701  Sum_probs=23.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      |.+|+|+|++||||||++..|...+
T Consensus         1 m~vi~i~G~~gsGKTTli~~L~~~l   25 (159)
T cd03116           1 MKVIGFVGYSGSGKTTLLEKLIPAL   25 (159)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999999999999877

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=95.31  E-value=0.016  Score=58.06  Aligned_cols=106  Identities=21%  Similarity=0.212  Sum_probs=58.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh----CCeEEecccee------ccc----ccC---------------C----CCC
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI----GCTLISMENYR------VGV----DEG---------------N----DLD  107 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L----g~~vI~~D~~~------~~~----~~~---------------~----~~~  107 (818)
                      ..-+++|.|+||||||||.+.+|...    |...|+..+.-      ++.    .+.               -    ...
T Consensus        24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~  103 (231)
T COG3840          24 AGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLN  103 (231)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccccC
Confidence            34579999999999999999999744    45566665541      110    000               0    113


Q ss_pred             cccHHHHHHHHHhhhc-CCcccc-ccchhhhhccccccccccCCccEEEEEecccch-hhhh
Q 003460          108 SIDFDALVQNLQDLTE-GKDTLI-PMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLR  166 (818)
Q Consensus       108 ~~d~~~l~~~L~~l~~-~~~i~~-p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~  166 (818)
                      +.+.+.+...+...-- +..-.. +..+.....|+.-...-..+..|+++|-+|+.. +.++
T Consensus       104 a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR  165 (231)
T COG3840         104 AEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALR  165 (231)
T ss_pred             HHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHH
Confidence            3444444433332111 111111 235666666665444445666788898887754 4333

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.31  E-value=0.015  Score=65.45  Aligned_cols=38  Identities=24%  Similarity=0.256  Sum_probs=31.1

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYF  552 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy  552 (818)
                      ++|.+|++.||.||||||++..|+..+.     +.++++|-|-
T Consensus       239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R  281 (436)
T PRK11889        239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR  281 (436)
T ss_pred             cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence            3568999999999999999999997662     5577888664

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=95.31  E-value=0.014  Score=66.46  Aligned_cols=32  Identities=34%  Similarity=0.379  Sum_probs=27.6

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcc
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEV  545 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~v  545 (818)
                      ......|+|.|++|||||||++.|+..+|...
T Consensus       216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~  247 (399)
T PRK08099        216 PFFVRTVAILGGESSGKSTLVNKLANIFNTTS  247 (399)
T ss_pred             hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence            34567899999999999999999999988553

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=95.30  E-value=0.033  Score=58.03  Aligned_cols=51  Identities=29%  Similarity=0.420  Sum_probs=34.0

Q ss_pred             ccch--hhHHHHHHHHHHHH----hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeE
Q 003460           40 SFDH--GYYLLVKSIQELRE----KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTL   90 (818)
Q Consensus        40 s~~~--~~~~l~~~i~~~~~----~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~v   90 (818)
                      +|++  |-..+........+    +.....-+.+.||+|.||||||+.+|+.+|+.+
T Consensus        22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~   78 (233)
T PF05496_consen   22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNF   78 (233)
T ss_dssp             SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--E
T ss_pred             CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCe
Confidence            5666  55566665554433    223456799999999999999999999998655

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=95.26  E-value=0.13  Score=53.22  Aligned_cols=107  Identities=21%  Similarity=0.135  Sum_probs=59.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhC------CeEEeccceecccccC-CCCCcccHHHHHHHHHhhhcCCccccccchh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIG------CTLISMENYRVGVDEG-NDLDSIDFDALVQNLQDLTEGKDTLIPMFDY  134 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg------~~vI~~D~~~~~~~~~-~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~  134 (818)
                      |.+|.|+|-++|||||.|+.|++.|.      ...|+-|. ..++... ..-++-+-.++...|..-             
T Consensus         1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~de-slg~~~ns~y~~s~~EK~lRg~L~S~-------------   66 (281)
T KOG3062|consen    1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDE-SLGIEKNSNYGDSQAEKALRGKLRSA-------------   66 (281)
T ss_pred             CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechh-hcCCCCcccccccHHHHHHHHHHHHH-------------
Confidence            56899999999999999999999872      22333333 1222221 111222222333332210             


Q ss_pred             hhhccccccccccCCccEEEEEecccch---------hhhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          135 QQKNRIGSKVIKGASSGVVIVDGTYALD---------ARLRSLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       135 ~~~~~~~~~~~~~~~~~vVIvEG~~l~~---------~~l~~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                              .........+||+|...-..         .....---++|+..+|.+.+.++--.|.
T Consensus        67 --------v~R~Lsk~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~  123 (281)
T KOG3062|consen   67 --------VDRSLSKGDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSERE  123 (281)
T ss_pred             --------HHhhcccCcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCC
Confidence                    01123445688888653322         1111112367899999999988876555

>COG0645 Predicted kinase [General function prediction only]

Probab=95.24  E-value=0.015  Score=57.73  Aligned_cols=37  Identities=32%  Similarity=0.497  Sum_probs=33.2

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      .++.+.|.+||||||+|+.|++.+|+..|+.|..-+.
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~   38 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKR   38 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHH
Confidence            4677899999999999999999999999999987664

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=95.23  E-value=0.019  Score=64.98  Aligned_cols=34  Identities=32%  Similarity=0.535  Sum_probs=31.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN   95 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~   95 (818)
                      |.-|.+.||+|+||||+|+.|++.+++++++.|.
T Consensus        47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda   80 (441)
T TIGR00390        47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   80 (441)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence            4678999999999999999999999999999985

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.22  E-value=0.013  Score=61.59  Aligned_cols=24  Identities=42%  Similarity=0.639  Sum_probs=21.3

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      =+|+|.||||||||||-+.++-..
T Consensus        30 EfvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          30 EFVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999998754

>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]

Probab=95.22  E-value=0.013  Score=58.94  Aligned_cols=46  Identities=13%  Similarity=0.148  Sum_probs=34.8

Q ss_pred             cCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccc
Q 003460          608 EDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSR  653 (818)
Q Consensus       608 ~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~  653 (818)
                      ...++.|.+-||-+- ....=.+|..||+.+++++++.|..+|--.+
T Consensus       132 ~e~e~~iy~eW~d~i~~~~~v~~dgiIYLrasPetc~~Ri~~R~R~E  178 (244)
T KOG4235|consen  132 NEVEYVIYQEWFDWILRSMDVSLDGIIYLRASPETCYKRIYLRAREE  178 (244)
T ss_pred             ccchhhhHHHHHHHHHhccccccceEEEeecChHHHHHHHHHHhhhh
Confidence            345788888888653 2333457899999999999999999986444

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=95.20  E-value=0.016  Score=57.86  Aligned_cols=34  Identities=32%  Similarity=0.488  Sum_probs=27.8

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHh---C--Cccccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYF  552 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddfy  552 (818)
                      ++++.|++||||||++..++..+   |  +.++++|.+.
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~   40 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR   40 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence            68899999999999999998876   3  4567777653

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=95.20  E-value=0.017  Score=60.99  Aligned_cols=39  Identities=26%  Similarity=0.451  Sum_probs=33.6

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCC---cccccccccch
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGC---EVVSLESYFKS  554 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~---~vis~Ddfy~~  554 (818)
                      ...+|.+.|+.|||||+||+.||+.||.   +-+.||+.|.+
T Consensus        70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvd  111 (393)
T KOG3877|consen   70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVD  111 (393)
T ss_pred             cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeec
Confidence            4578999999999999999999999994   45578888876

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=95.16  E-value=0.018  Score=65.31  Aligned_cols=34  Identities=32%  Similarity=0.535  Sum_probs=31.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN   95 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~   95 (818)
                      +..|.+.||+|+||||+|+.|++.++++++..|.
T Consensus        50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~   83 (443)
T PRK05201         50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   83 (443)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence            4679999999999999999999999998888876

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.15  E-value=0.028  Score=56.44  Aligned_cols=36  Identities=42%  Similarity=0.609  Sum_probs=28.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCC----eE--Eecccee
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGC----TL--ISMENYR   97 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~----~v--I~~D~~~   97 (818)
                      ...+.++||+|+|||.+|+.|++.+..    .+  +++-.|-
T Consensus         3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~   44 (171)
T PF07724_consen    3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYS   44 (171)
T ss_dssp             SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHC
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccc
Confidence            467899999999999999999999984    44  4555553

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>CHL00195 ycf46 Ycf46; Provisional

Probab=95.14  E-value=0.042  Score=64.17  Aligned_cols=61  Identities=16%  Similarity=0.166  Sum_probs=41.3

Q ss_pred             CCcccccch--hhHHHHHHHHHHH-------Hh--cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460           35 LPVHASFDH--GYYLLVKSIQELR-------EK--KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN   95 (818)
Q Consensus        35 ~~~~~s~~~--~~~~l~~~i~~~~-------~~--~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~   95 (818)
                      .+...+|++  |...+.+.+....       .+  -+.+.-|.+.||+|+|||.+|+.+|..+|.+++..|.
T Consensus       221 ~~~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~  292 (489)
T CHL00195        221 YSVNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDV  292 (489)
T ss_pred             cCCCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEh
Confidence            344566776  4444444443321       11  1345678999999999999999999999988766553

>cd01131 PilT Pilus retraction ATPase PilT

Probab=95.13  E-value=0.016  Score=59.49  Aligned_cols=24  Identities=33%  Similarity=0.638  Sum_probs=21.0

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhC
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      +|.|+||+||||||+.+.|...+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            688999999999999998877653

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=95.11  E-value=0.017  Score=56.13  Aligned_cols=23  Identities=43%  Similarity=0.694  Sum_probs=21.6

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHh
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      +|+|.|+++||||||++.|.+.+
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            78999999999999999999877

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=95.09  E-value=0.073  Score=50.54  Aligned_cols=41  Identities=17%  Similarity=0.262  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHH--hcCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           46 YLLVKSIQELRE--KKGGIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        46 ~~l~~~i~~~~~--~~~~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ..+++++..+..  ++++|+++..-|++|+|||.+++.||+.+
T Consensus        35 ~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   35 EVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             HHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence            345666666664  35678999999999999999999999975

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=95.08  E-value=0.017  Score=65.18  Aligned_cols=28  Identities=32%  Similarity=0.409  Sum_probs=25.6

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      .+|.+|+|+|.+|||||||+..|...|+
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~   30 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRLS   30 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence            3689999999999999999999998875

>PRK10867 signal recognition particle protein; Provisional

Probab=95.06  E-value=0.02  Score=65.63  Aligned_cols=38  Identities=29%  Similarity=0.436  Sum_probs=31.1

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHh----C--Cccccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIV----G--CEVVSLESYF  552 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~l----g--~~vis~Ddfy  552 (818)
                      ++|.+|.++|++||||||++..|+..+    |  +.++++|.|-
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R  141 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR  141 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence            458999999999999999998888755    3  5678888753

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=95.05  E-value=0.14  Score=62.41  Aligned_cols=40  Identities=25%  Similarity=0.387  Sum_probs=31.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceeccc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGV  100 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~  100 (818)
                      +..+|.+.|.+|+||||+|+.|++.|+     +.+++.|.+.+.+
T Consensus       214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~  258 (664)
T PTZ00322        214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRL  258 (664)
T ss_pred             cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhh
Confidence            457899999999999999999999985     4555556655544

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.04  E-value=0.04  Score=62.07  Aligned_cols=50  Identities=26%  Similarity=0.305  Sum_probs=38.0

Q ss_pred             cccch--hhHHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460           39 ASFDH--GYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGC   88 (818)
Q Consensus        39 ~s~~~--~~~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~   88 (818)
                      -+|++  |-..+++.+.......+-+-.+.+.||+|+||||+|+.+++.++|
T Consensus        13 ~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c   64 (363)
T PRK14961         13 QYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC   64 (363)
T ss_pred             CchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence            34555  455566666665555555667899999999999999999998875

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=95.04  E-value=0.041  Score=61.81  Aligned_cols=39  Identities=33%  Similarity=0.590  Sum_probs=34.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhC-------CeEEeccceecc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIG-------CTLISMENYRVG   99 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg-------~~vI~~D~~~~~   99 (818)
                      +..+|++.||+|+||||....||.++.       +.+|++|.|+-+
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIG  247 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIG  247 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhh
Confidence            478999999999999999999988763       789999999764

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.04  E-value=0.017  Score=60.69  Aligned_cols=25  Identities=40%  Similarity=0.489  Sum_probs=22.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      --+|+|.||||||||||.+.+|...
T Consensus        29 GEfvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          29 GEFVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3469999999999999999999855

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=95.03  E-value=0.023  Score=63.09  Aligned_cols=30  Identities=40%  Similarity=0.522  Sum_probs=26.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEE
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLI   91 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI   91 (818)
                      ...|+|.|++|||||||++.|+..+|..++
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v  191 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA  191 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence            357999999999999999999998887763

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=95.03  E-value=0.02  Score=58.89  Aligned_cols=24  Identities=33%  Similarity=0.555  Sum_probs=21.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      +|.|+||+||||||+.+.|...+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            689999999999999998877653

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=95.02  E-value=0.02  Score=55.65  Aligned_cols=24  Identities=42%  Similarity=0.596  Sum_probs=21.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ++|+|+|+++||||||++.|...|
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            479999999999999999998876

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.02  E-value=0.02  Score=64.93  Aligned_cols=38  Identities=42%  Similarity=0.605  Sum_probs=30.8

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh----C--CeEEeccceec
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI----G--CTLISMENYRV   98 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L----g--~~vI~~D~~~~   98 (818)
                      ++.+|+++|++||||||++..||..+    |  +.++++|.|..
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~  265 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI  265 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence            35789999999999999999999754    3  56788887644

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.01  E-value=0.018  Score=55.15  Aligned_cols=26  Identities=46%  Similarity=0.769  Sum_probs=22.4

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCcc
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEV  545 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~v  545 (818)
                      |.|.|++|+|||++++.+++.++..+
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~~~   27 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGRPV   27 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhcce
Confidence            56799999999999999999986443

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF13173 AAA_14: AAA domain

Probab=95.00  E-value=0.029  Score=53.28  Aligned_cols=35  Identities=29%  Similarity=0.405  Sum_probs=28.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhC----CeEEeccce
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIG----CTLISMENY   96 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg----~~vI~~D~~   96 (818)
                      ..++.|.|+.|+||||+++.+++.+.    +..++.|+.
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~   40 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDP   40 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCH
Confidence            35789999999999999999997664    566777775

>TIGR00959 ffh signal recognition particle protein

Probab=94.98  E-value=0.022  Score=65.38  Aligned_cols=37  Identities=32%  Similarity=0.498  Sum_probs=30.9

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHh----C--Ccccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIV----G--CEVVSLESY  551 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~l----g--~~vis~Ddf  551 (818)
                      ++|.+|.++|++||||||++..|+..+    |  +.++++|-|
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~  139 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY  139 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence            468999999999999999999998764    2  567888864

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.97  E-value=0.014  Score=59.83  Aligned_cols=26  Identities=27%  Similarity=0.422  Sum_probs=22.3

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHH
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      -.+..|.++.||||||||||.+.|-.
T Consensus        30 i~~~~VTAlIGPSGcGKST~LR~lNR   55 (253)
T COG1117          30 IPKNKVTALIGPSGCGKSTLLRCLNR   55 (253)
T ss_pred             ccCCceEEEECCCCcCHHHHHHHHHh
Confidence            34567899999999999999998865

>PRK13768 GTPase; Provisional

Probab=94.96  E-value=0.028  Score=60.05  Aligned_cols=35  Identities=29%  Similarity=0.511  Sum_probs=29.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccce
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENY   96 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~   96 (818)
                      +.+|.|.|++||||||++..++..+   |  +.+|+.|.-
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~   41 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA   41 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence            4789999999999999999998766   3  567888863

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=94.94  E-value=0.023  Score=56.40  Aligned_cols=25  Identities=40%  Similarity=0.614  Sum_probs=22.8

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      .+|+|+|++||||||++.+|...+.
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~   26 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALS   26 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999998773

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=94.93  E-value=0.023  Score=55.75  Aligned_cols=28  Identities=43%  Similarity=0.596  Sum_probs=25.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCe
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCT   89 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~   89 (818)
                      +++|+|.||-.||||||+++||+.+|..
T Consensus         8 ~K~VailG~ESsGKStLv~kLA~~fnt~   35 (187)
T COG3172           8 VKTVAILGGESSGKSTLVNKLANIFNTT   35 (187)
T ss_pred             heeeeeecCcccChHHHHHHHHHHhCCC
Confidence            5789999999999999999999998754

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=94.92  E-value=0.04  Score=67.01  Aligned_cols=27  Identities=37%  Similarity=0.382  Sum_probs=23.0

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ++--.|||.|.||||||||++.|...+
T Consensus       497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly  523 (709)
T COG2274         497 PPGEKVAIVGRSGSGKSTLLKLLLGLY  523 (709)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344579999999999999999998754

>PF13173 AAA_14: AAA domain

Probab=94.92  E-value=0.026  Score=53.64  Aligned_cols=36  Identities=25%  Similarity=0.361  Sum_probs=27.6

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhC----Ccccccccccc
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVG----CEVVSLESYFK  553 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg----~~vis~Ddfy~  553 (818)
                      .++.|.||.|+||||+++.+++.+.    ...+++|+...
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~   42 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD   42 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH
Confidence            4688999999999999999997654    44555555543

>PRK08084 DNA replication initiation factor; Provisional

Probab=94.91  E-value=0.047  Score=57.66  Aligned_cols=59  Identities=14%  Similarity=0.265  Sum_probs=37.1

Q ss_pred             Ccccccch---h-hHHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccc
Q 003460           36 PVHASFDH---G-YYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMEN   95 (818)
Q Consensus        36 ~~~~s~~~---~-~~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~   95 (818)
                      |...+||+   + -...+..++...... ....+.|.||+|||||+++..++..+.     +.+++.+.
T Consensus        16 ~~~~~fd~f~~~~n~~a~~~l~~~~~~~-~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         16 PDDETFASFYPGDNDSLLAALQNALRQE-HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             CCcCCccccccCccHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            33445655   1 233445555444333 334688999999999999999987653     34555554

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=94.91  E-value=0.029  Score=62.47  Aligned_cols=36  Identities=28%  Similarity=0.317  Sum_probs=31.4

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN   95 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~   95 (818)
                      +.|.+++|-||+|+|||.+|+.++..+|+.+|.++.
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa  181 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSA  181 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEH
Confidence            568999999999999999999999999987655544

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.88  E-value=0.021  Score=64.91  Aligned_cols=37  Identities=32%  Similarity=0.453  Sum_probs=29.5

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh----C--Cccccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV----G--CEVVSLESYF  552 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l----g--~~vis~Ddfy  552 (818)
                      ++.+|+++||+||||||++..|+..+    |  +.++++|-|-
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R  264 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR  264 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence            46789999999999999999999754    2  4567777643

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=94.86  E-value=0.024  Score=55.59  Aligned_cols=28  Identities=39%  Similarity=0.494  Sum_probs=25.1

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCE  544 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~  544 (818)
                      ..+|.|.||-+||||||+++|++.++.+
T Consensus         8 ~K~VailG~ESsGKStLv~kLA~~fnt~   35 (187)
T COG3172           8 VKTVAILGGESSGKSTLVNKLANIFNTT   35 (187)
T ss_pred             heeeeeecCcccChHHHHHHHHHHhCCC
Confidence            4689999999999999999999999854

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.84  E-value=0.024  Score=63.49  Aligned_cols=39  Identities=18%  Similarity=0.300  Sum_probs=32.3

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFK  553 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddfy~  553 (818)
                      .++.+|++.||+||||||++..|+..+   |  +.++++|.|--
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~  247 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS  247 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence            357899999999999999999999766   2  56788887744

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=94.84  E-value=0.022  Score=56.55  Aligned_cols=25  Identities=44%  Similarity=0.591  Sum_probs=23.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      +.+++|+|.++||||||...|...|
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L   26 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKL   26 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHH
Confidence            6799999999999999999998877

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.84  E-value=0.031  Score=63.34  Aligned_cols=38  Identities=34%  Similarity=0.600  Sum_probs=31.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh---------CCeEEeccceec
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI---------GCTLISMENYRV   98 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L---------g~~vI~~D~~~~   98 (818)
                      ++.+|++.|++|+||||++..||..+         .+.++++|.|.-
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~  219 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI  219 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence            46799999999999999999999765         256789998744

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=94.82  E-value=0.022  Score=65.43  Aligned_cols=37  Identities=35%  Similarity=0.510  Sum_probs=31.2

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESY  551 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddf  551 (818)
                      .+|.+|.++|++||||||++..|+..+   |  +.++++|.|
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~  134 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY  134 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence            468899999999999999999999877   2  557777765

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=94.82  E-value=0.02  Score=56.75  Aligned_cols=26  Identities=38%  Similarity=0.483  Sum_probs=23.5

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      +.|++|+|.++||||||..+|...|.
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L~   27 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKLK   27 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHHH
Confidence            56899999999999999999988773

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=94.79  E-value=0.054  Score=51.40  Aligned_cols=40  Identities=28%  Similarity=0.462  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHc--CCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          502 LSVQAIQALLEN--KGLPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       502 ~~~~~i~~l~~~--~~~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      .++.++..+.++  .++|+++..-|++|+|||.+++.||+.+
T Consensus        36 ~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   36 VVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             HHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence            355666666654  6689999999999999999999999975

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=94.79  E-value=0.02  Score=58.10  Aligned_cols=20  Identities=25%  Similarity=0.602  Sum_probs=0.0

Q ss_pred             EEeeeCCCCccHHHHHHHHH
Q 003460          519 IVGIGGPSGSGKTSLAHKMA  538 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~  538 (818)
                      ++||.|++|||||||.+.|+
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~   39 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLN   39 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHh

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=94.79  E-value=0.021  Score=56.46  Aligned_cols=23  Identities=35%  Similarity=0.671  Sum_probs=21.1

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHh
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      ||+|+|++||||||++.+|...+
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l   23 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKAL   23 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999876

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK10867 signal recognition particle protein; Provisional

Probab=94.78  E-value=0.035  Score=63.70  Aligned_cols=39  Identities=31%  Similarity=0.407  Sum_probs=31.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh----C--CeEEeccceec
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI----G--CTLISMENYRV   98 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L----g--~~vI~~D~~~~   98 (818)
                      .++.+|.++|++||||||++..||..+    |  +.++++|.|..
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~  142 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP  142 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence            447899999999999999888888755    3  56789998744

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=94.77  E-value=0.021  Score=59.35  Aligned_cols=35  Identities=26%  Similarity=0.329  Sum_probs=26.6

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCcc-cccccccc
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEV-VSLESYFK  553 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~v-is~Ddfy~  553 (818)
                      ++|||+|.+||||||+|+.+.+. |..+ ++|-|--+
T Consensus         1 miI~i~G~~gsGKstva~~~~~~-g~~~~~~~~d~ik   36 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFIIEN-YNAVKYQLADPIK   36 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHhc-CCcEEEehhHHHH
Confidence            38999999999999999988764 5444 66554433

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=94.76  E-value=0.035  Score=57.81  Aligned_cols=30  Identities=37%  Similarity=0.432  Sum_probs=22.7

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEV  545 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~v  545 (818)
                      ...-+.+.||+|.||||||+.+++.+++.+
T Consensus        49 ~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~   78 (233)
T PF05496_consen   49 ALDHMLFYGPPGLGKTTLARIIANELGVNF   78 (233)
T ss_dssp             ---EEEEESSTTSSHHHHHHHHHHHCT--E
T ss_pred             CcceEEEECCCccchhHHHHHHHhccCCCe
Confidence            344567899999999999999999998553

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK09087 hypothetical protein; Validated

Probab=94.75  E-value=0.02  Score=60.13  Aligned_cols=34  Identities=29%  Similarity=0.328  Sum_probs=28.4

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK  553 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~  553 (818)
                      +.|.|++|||||+|++.+++..++.+++.++|-.
T Consensus        47 l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~   80 (226)
T PRK09087         47 VVLAGPVGSGKTHLASIWREKSDALLIHPNEIGS   80 (226)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCEEecHHHcch
Confidence            5789999999999999999888877777765443

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=94.75  E-value=0.024  Score=64.20  Aligned_cols=34  Identities=29%  Similarity=0.601  Sum_probs=30.9

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCccccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES  550 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Dd  550 (818)
                      |.-|.+.||+||||||+|+.|+..++++++..|.
T Consensus        50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~   83 (443)
T PRK05201         50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   83 (443)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence            5678899999999999999999999998888885

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.75  E-value=0.025  Score=64.00  Aligned_cols=39  Identities=28%  Similarity=0.476  Sum_probs=32.1

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhC---------Ccccccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVG---------CEVVSLESYFK  553 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg---------~~vis~Ddfy~  553 (818)
                      .+|.+|.+.||+|+||||++..|+..+.         +.++++|.|.-
T Consensus       172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~  219 (388)
T PRK12723        172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI  219 (388)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence            4578999999999999999999997652         55888887743

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=94.74  E-value=0.018  Score=54.89  Aligned_cols=20  Identities=55%  Similarity=0.891  Sum_probs=0.0

Q ss_pred             EEeeeCCCCccHHHHHHHHH
Q 003460          519 IVGIGGPSGSGKTSLAHKMA  538 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~  538 (818)
                      +++|.|++|||||||.+.|+
T Consensus        13 ~~~i~G~nGsGKStLl~~l~   32 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALA   32 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHT
T ss_pred             EEEEEccCCCccccceeeec

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=94.73  E-value=0.021  Score=59.20  Aligned_cols=20  Identities=30%  Similarity=0.484  Sum_probs=0.0

Q ss_pred             EEeeeCCCCccHHHHHHHHH
Q 003460          519 IVGIGGPSGSGKTSLAHKMA  538 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~  538 (818)
                      ++||.|++|||||||.+.|+
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~   50 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLIL   50 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHh

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.73  E-value=0.034  Score=62.30  Aligned_cols=39  Identities=23%  Similarity=0.382  Sum_probs=32.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceec
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRV   98 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~   98 (818)
                      .+..+|+++||+||||||++..|+..+   |  +.+|++|.|.-
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~  247 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS  247 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence            346789999999999999999998766   3  56799998744

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=94.72  E-value=0.03  Score=56.85  Aligned_cols=37  Identities=24%  Similarity=0.248  Sum_probs=0.0

Q ss_pred             HHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          505 QAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       505 ~~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      ...+.+...-.....|+|+|++||||||+.+.|...+
T Consensus        13 ~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          13 LQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	818
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	6e-39
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	8e-26
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	4e-33
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	1e-27
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	4e-29
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	5e-25
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	5e-26
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	8e-24
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	6e-24
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	6e-18
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	2e-19
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	2e-14
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	2e-17
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	1e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	5e-13
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	3e-10
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	3e-11
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	1e-10
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	6e-10
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	2e-09
1yem_A	179	Hypothetical protein; structural genomics, southea	6e-06
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	1e-05
2hf9_A	226	Probable hydrogenase nickel incorporation protein	2e-05
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	3e-04
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	8e-04
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	4e-04
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	4e-04

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Length = 252

 Score =  144 bits (364), Expect = 6e-39
 Identities = 50/211 (23%), Positives = 94/211 (44%), Gaps = 24/211 (11%)

Query: 503 SVQAIQALLE-NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCE----------VVSLESY 551
           S Q +Q   + N G P ++G+ G + SGK+S+  K+  ++G            ++S +S+
Sbjct: 7   SEQTLQNHQQPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF 66

Query: 552 FKS--------EQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKE 603
           ++              F +D   + D  L+ K + +I  G+  ++P++D  + +R    E
Sbjct: 67  YRVLTSEQKAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKE--E 124

Query: 604 LEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-- 660
                   V++FEG+ A +  E+R    + + V     + L  RV RD S  G  + Q  
Sbjct: 125 TVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQIL 184

Query: 661 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691
           +  +  V P F++   P   +A + I    D
Sbjct: 185 SQYITFVKPAFEEFCLPTKKYADVIIPRGAD 215

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Length = 252

 Score =  106 bits (266), Expect = 8e-26
 Identities = 40/205 (19%), Positives = 89/205 (43%), Gaps = 30/205 (14%)

Query: 50  KSIQELREKKGG-IVTVGIGGPSGSGKTSLAEKLASVIG----------CTLISMENYRV 98
           +++Q  ++  GG    +G+ G + SGK+S+  K+  ++G            ++S +++  
Sbjct: 9   QTLQNHQQPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68

Query: 99  GVDEG------------NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIK 146
            +               +  D+ D + +++ L+++TEGK   IP++D+   +R   + + 
Sbjct: 69  VLTSEQKAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKE-ETVT 127

Query: 147 GASSGVVIVDGTYAL-DARLRSLLDIRVAVVGGVHFSLISKVQYDIGD-SCSLDSLIDSI 204
              + VV+ +G  A     +R L  +++ V       L  +V  DI +    L+ ++   
Sbjct: 128 VYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQY 187

Query: 205 F----PLFRKHIEPDLHHAQIRINN 225
                P F +   P   +A + I  
Sbjct: 188 ITFVKPAFEEFCLPTKKYADVIIPR 212

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Length = 211

 Score =  125 bits (317), Expect = 4e-33
 Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 13/186 (6%)

Query: 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVV--SLESYFKS------EQVKDFKYDDFSSL 568
           P ++GI G + SGKT+LA  +A  +G  V    ++ Y+K       E+     YD   + 
Sbjct: 6   PFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAF 65

Query: 569 DLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRK 627
           DL+L  ++   +  G   ++P++D     RS  +         V+I EG+  L+  E+R 
Sbjct: 66  DLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAP--VVILEGILVLYPKELRD 123

Query: 628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLK 685
            +DL + V        I R++RD    G  +       +  V PM    +EP   +A + 
Sbjct: 124 LMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVI 183

Query: 686 IRNDFD 691
           +     
Sbjct: 184 VPRGGQ 189

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Length = 211

 Score =  110 bits (276), Expect = 1e-27
 Identities = 44/180 (24%), Positives = 85/180 (47%), Gaps = 21/180 (11%)

Query: 65  VGIGGPSGSGKTSLAEKLASVIG--CTLISMENY-----RVGVDEGN-----DLDSIDFD 112
           +GI G + SGKT+LA+ LA  +G    L+ M++Y      + ++E         D+ D  
Sbjct: 9   IGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLA 68

Query: 113 ALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKV-IKGASSGVVIVDGTYAL-DARLRSLLD 170
             +++ Q L  G    +P++D++   R   +  ++ A   VVI++G   L    LR L+D
Sbjct: 69  LYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAP--VVILEGILVLYPKELRDLMD 126

Query: 171 IRVAVVGGVHFSLISKVQYDIGD-SCSLDSLIDSIF----PLFRKHIEPDLHHAQIRINN 225
           ++V V        I +++ D+ +   SL+ ++        P+    +EP   +A + +  
Sbjct: 127 LKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPR 186

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Length = 245

 Score =  115 bits (290), Expect = 4e-29
 Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 24/196 (12%)

Query: 517 PVIVGIGGPSGSGKTSLAHKMANIVG----------CEVVSLESYFK----SEQVKDFK- 561
           P ++G+ G + SGK+++  K+  ++G            ++S + ++K     ++ K  K 
Sbjct: 25  PFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKG 84

Query: 562 ---YDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGV 618
              +D   + D  L+ + + +I  G+  +VP +D  T +R     +    D  V++FEG+
Sbjct: 85  QYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPAD--VVLFEGI 142

Query: 619 YALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHI 675
              +  EIR    L + V       L  RV RD  R G  + Q        V P F++  
Sbjct: 143 LVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVRR-GRDLEQILTQYTTFVKPAFEEFC 201

Query: 676 EPHLVHAHLKIRNDFD 691
            P   +A + I    D
Sbjct: 202 LPTKKYADVIIPRGVD 217

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Length = 245

 Score =  103 bits (259), Expect = 5e-25
 Identities = 35/200 (17%), Positives = 79/200 (39%), Gaps = 28/200 (14%)

Query: 53  QELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG----------CTLISMENYRVGVDE 102
           + L  +      +G+ G + SGK+++ EK+  ++G            ++S + +   +  
Sbjct: 16  ENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTA 75

Query: 103 G------------NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASS 150
                        +  D+ D D + + L+++ EGK   +P +D+   +R+  +      +
Sbjct: 76  EQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLP-ETTVVYPA 134

Query: 151 GVVIVDGTYAL-DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIF---- 205
            VV+ +G        +R +  +R+ V       L  +V  D+     L+ ++        
Sbjct: 135 DVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVRRGRDLEQILTQYTTFVK 194

Query: 206 PLFRKHIEPDLHHAQIRINN 225
           P F +   P   +A + I  
Sbjct: 195 PAFEEFCLPTKKYADVIIPR 214

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201

 Score =  105 bits (264), Expect = 5e-26
 Identities = 33/199 (16%), Positives = 71/199 (35%), Gaps = 26/199 (13%)

Query: 506 AIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKS------ 554
               L       +++GI G S SGKT+LA++++  +        V  ++ +         
Sbjct: 11  CKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYH 70

Query: 555 EQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVI 613
              +++    +   D+  L+  +   ++   +  +P +D ET   S         D  +I
Sbjct: 71  TGNEEWFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSK--RTVYLSDSDMI 128

Query: 614 IFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMG----CFMSQNDIMMTVFP 669
           + EGV+    E R   D  +     +      R  R+  ++      F+++         
Sbjct: 129 MIEGVFLQRKEWRPFFDFVVY----LDCPREIRFARENDQVKQNIQKFINR---YWKAED 181

Query: 670 MFQQHIEPHLVHAHLKIRN 688
            + +  EP    A +    
Sbjct: 182 YYLETEEPIK-RADVVFDM 199

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201

 Score = 99.0 bits (247), Expect = 8e-24
 Identities = 31/190 (16%), Positives = 69/190 (36%), Gaps = 24/190 (12%)

Query: 55  LREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENY--------RVGVD 101
           L  K  G + +GI G S SGKT+LA +L+  +        +  M+++          G +
Sbjct: 15  LAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNE 74

Query: 102 EGN--DLDSIDFDALVQNL-QDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGT 158
           E         D + L   L + L       +P +D++       + +  + S +++++G 
Sbjct: 75  EWFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGV 133

Query: 159 YALDARLRSLLDIRVAVVGGVHFSLISKVQYDIG-DSCSLDSLIDSIFPLFRKHIEPDL- 216
           +      R   D  V     +      +   +      ++   I+  +     ++E +  
Sbjct: 134 FLQRKEWRPFFDFVVY----LDCPREIRFARENDQVKQNIQKFINRYWKAEDYYLETEEP 189

Query: 217 -HHAQIRINN 225
              A +  + 
Sbjct: 190 IKRADVVFDM 199

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Length = 207

 Score = 99.5 bits (248), Expect = 6e-24
 Identities = 36/193 (18%), Positives = 68/193 (35%), Gaps = 22/193 (11%)

Query: 505 QAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG-CEVVSLESYFK------SEQV 557
                L+       I+GI G + SGKT+LA  +   +  C V+S + +FK      +++ 
Sbjct: 9   HHSSGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKN 68

Query: 558 KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEG 617
              +YD   +L++  +   IS      R  V   D E+            E+  ++I EG
Sbjct: 69  GFLQYDVLEALNMEKMMSAISCWMESARHSVVSTDQESA-----------EEIPILIIEG 117

Query: 618 VYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIE 676
               +   +    +    +          R  R   +        D    V+PM+ ++ +
Sbjct: 118 FLLFNYKPLDTIWNRSYFLTIPYEECKRRRSTRVY-QPPDSPGYFD--GHVWPMYLKYRQ 174

Query: 677 PHLVHAHLKIRND 689
                    +  D
Sbjct: 175 EMQDITWEVVYLD 187

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Length = 207

 Score = 82.2 bits (203), Expect = 6e-18
 Identities = 24/175 (13%), Positives = 62/175 (35%), Gaps = 22/175 (12%)

Query: 57  EKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-CTLISMENY-----RVGVDEGN-----D 105
            +      +GI G + SGKT+LA+ L   +  C++IS +++      +  D+        
Sbjct: 16  PRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDV 75

Query: 106 LDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DAR 164
           L++++ + ++  +    E     +   D +    I           ++I++G        
Sbjct: 76  LEALNMEKMMSAISCWMESARHSVVSTDQESAEEI----------PILIIEGFLLFNYKP 125

Query: 165 LRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHA 219
           L ++ +    +          +         S       ++P++ K+ +      
Sbjct: 126 LDTIWNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYRQEMQDIT 180

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Length = 290

 Score = 88.6 bits (219), Expect = 2e-19
 Identities = 28/241 (11%), Positives = 73/241 (30%), Gaps = 36/241 (14%)

Query: 517 PVIVGIGGPSGSGKTSLAHKMANIVGCE-----VVSLESYFK--------------SEQV 557
             I+ + G SG+G +++ H    I   E      +  +++ +              +   
Sbjct: 5   HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGD 64

Query: 558 KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKEL--------EVSED 609
             F +  + + +L  L +   +     + +   +  +    +             +   D
Sbjct: 65  ATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSD 124

Query: 610 CGVIIFEGVYAL----HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM 665
             ++ +EG++         I    DL I VV  ++   I ++ RD++  G   +   +  
Sbjct: 125 SHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWIQKIHRDRATRG--YTTEAVTD 182

Query: 666 TVF---PMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAK 722
            +      +   I P      +  +       S       + +  +       +      
Sbjct: 183 VILRRMHAYVHCIVPQFSQTDINFQRVPVVDTSNPFIARWIPTADESVVVIRFRNPRGID 242

Query: 723 F 723
           F
Sbjct: 243 F 243

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Length = 290

 Score = 73.9 bits (181), Expect = 2e-14
 Identities = 24/200 (12%), Positives = 61/200 (30%), Gaps = 40/200 (20%)

Query: 65  VGIGGPSGSGKTSLAEKLASVIG-----CTLISMENY----------------RVGVDEG 103
           + + G SG+G +++      +          I  + +                  G    
Sbjct: 8   ISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATF 67

Query: 104 NDL--DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKG---------ASSGV 152
           +    ++ +   L +  ++  E        + +       + V  G         + S +
Sbjct: 68  SHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHL 127

Query: 153 VIVDGTYAL----DARLRSLLDIRVAVVGGVHFSLISKVQYDIGD-SCSLDSLIDSIF-- 205
           +  +G +      +  +  L D+++ VV  ++   I K+  D      + +++ D I   
Sbjct: 128 LFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILRR 187

Query: 206 -PLFRKHIEPDLHHAQIRIN 224
              +   I P      I   
Sbjct: 188 MHAYVHCIVPQFSQTDINFQ 207

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Length = 208

 Score = 80.5 bits (199), Expect = 2e-17
 Identities = 35/205 (17%), Positives = 72/205 (35%), Gaps = 22/205 (10%)

Query: 502 LSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCE-----VVSLESYFKSEQ 556
           L    ++ L   +    +V + G  GSGK++L++ +A  +  +     VV ++ +    +
Sbjct: 7   LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNR 66

Query: 557 VKDFK-----YDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCG 611
           + + +          + D     +    +++  R   P+FD            EV  +C 
Sbjct: 67  LLEPRGLLPRKGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIA-GAAEVGPECR 125

Query: 612 VIIFEGVYALHP-----EIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIM-- 664
           V I EG Y L       ++    D+ I +   +       VQR        ++ +  +  
Sbjct: 126 VAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRWLDH---GLNHDAAVAR 182

Query: 665 -MTVFPMFQQHIEPHLVHAHLKIRN 688
                    + IE   + A L    
Sbjct: 183 AQGNDLANARAIEAARLPADLTWPQ 207

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Length = 208

 Score = 78.2 bits (193), Expect = 1e-16
 Identities = 29/148 (19%), Positives = 59/148 (39%), Gaps = 19/148 (12%)

Query: 47  LLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGC-----TLISMENY----- 96
           L    ++ L  ++ G   V + G  GSGK++L+  LA+ +        ++ M+ +     
Sbjct: 7   LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNR 66

Query: 97  ----RVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGV 152
               R  +      ++ DF+   +    L   +  + P+FD  +   I      G    V
Sbjct: 67  LLEPRGLLPRKGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRV 126

Query: 153 VIVDGTYAL-----DARLRSLLDIRVAV 175
            I++G Y L        L ++ D+ + +
Sbjct: 127 AIIEGNYLLFDAPGWRDLTAIWDVSIRL 154

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 83.4 bits (205), Expect = 2e-16
 Identities = 105/710 (14%), Positives = 206/710 (29%), Gaps = 219/710 (30%)

Query: 184 ISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVSSFREA--IYKLKCR 241
             + QY   D          I  +F      +     ++   + + S  E   I   K  
Sbjct: 11  TGEHQYQYKD----------ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60

Query: 242 SEAPGACSISAFQGNEAQTDNFIEMYLRPPSATEEARIN-DWI------KMRQSGIRY-- 292
                    +     E     F+E  LR          N  ++      + RQ  +    
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRI---------NYKFLMSPIKTEQRQPSMMTRM 111

Query: 293 YLS-----IGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYSVVASYKRASTYV-VYGN 346
           Y+        D ++  K  + R +   ++ +     LL+L         R +  V + G 
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ----ALLEL---------RPAKNVLIDG- 157

Query: 347 LSVSFETIDTLDETFMVLRGTNRKTV-GAEALR-------MGINGPWIT-------KSYL 391
                          ++  G+  KT    +          M     W+        ++ L
Sbjct: 158 ---------------VL--GSG-KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 392 EMV--LEKKGVPRLNTPPLFPNTPTTSNQESVIAAPRPI---RTNPN--LVMKLEDLSQP 444
           EM+  L  +  P   +     +        S+ A  R +   +   N  LV  L ++   
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIK-LRIHSIQAELRRLLKSKPYENCLLV--LLNVQNA 256

Query: 445 WTRSP--TKSKMEPVLATWHFISSDPSHAGSSVI--GSSSFRDTVKLVPMPDSYDFD--R 498
              +      K   +L T    +         V    S++    + L     +   D  +
Sbjct: 257 KAWNAFNLSCK---ILLT----TRF-----KQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 499 GLLLSV--QAIQAL--LENKGLP-VIVGIG-----GPSGSG--KTSLAHKMANIVGCEVV 546
            LLL       Q L        P  +  I      G +     K     K+  I+     
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE---S 361

Query: 547 SLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEV 606
           SL     +E  K F         LS+   +           +P   L            +
Sbjct: 362 SLNVLEPAEYRKMFD-------RLSVFPPS---------AHIPTILLSL-----IWFDVI 400

Query: 607 SEDCGVIIFE----------------GVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD 650
             D  V++ +                 + +++ E++  L+   A+    H  ++      
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL----HRSIVDHYNIP 456

Query: 651 KSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVA 710
           K+        +D++    P   Q+   H+ H HLK     +       +LF     + V 
Sbjct: 457 KTF-----DSDDLIP---PYLDQYFYSHIGH-HLKNIEHPE-----RMTLF-----RMV- 496

Query: 711 YQDILKILDPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCI------RVRIC--EGRFA 762
           + D                F++  +R      N   +  + +      +  IC  + ++ 
Sbjct: 497 FLDF--------------RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542

Query: 763 LLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQD 812
            L+   L   +F+  PK++ ++  S    LL +   A         I+++
Sbjct: 543 RLVNAIL---DFL--PKIEENLICSKYTDLLRIALMA-----EDEAIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 3e-10
 Identities = 65/400 (16%), Positives = 121/400 (30%), Gaps = 106/400 (26%)

Query: 5   VVQRVFEEGGR-DY-F--------QQQPSTSS-----------SSPSILQSLPVHASFDH 43
           +VQ+  EE  R +Y F        Q+QPS  +           +   +     V  S   
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQ 135

Query: 44  GYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGC---TLISMENYRVG- 99
            Y  L +++ ELR  K     V I G  GSGKT +A     V  C    +    ++++  
Sbjct: 136 PYLKLRQALLELRPAKN----VLIDGVLGSGKTWVA---LDV--CLSYKVQCKMDFKIFW 186

Query: 100 VDEGNDLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSKVIKGASS-------- 150
           ++  N       + +++ LQ L    D       D+    ++    I+            
Sbjct: 187 LNLKNCNSP---ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 151 --GVVIVDGTY------ALDARLRSLL---DIRVA-VVGGVHFSLISKVQYDIGDSCSLD 198
              ++++          A +   + LL     +V   +     + IS   + +  +   +
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-E 302

Query: 199 SLIDSIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKCRSEAPGACSISAF--QGN 256
               S+   +      DL    +  N R +S   E+I       +              N
Sbjct: 303 VK--SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD---------NWKHVN 351

Query: 257 EAQTDNFIEM---YLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPK-- 311
             +    IE     L P     E R            + +  +    +   +  I     
Sbjct: 352 CDKLTTIIESSLNVLEP----AEYR------------KMFDRLS---VFPPSAHIPTILL 392

Query: 312 ------AEFEVGRMTLGGLLDLGYSVVASYKRASTYVVYG 345
                        + +  L    YS+V    + ST  +  
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHK--YSLVEKQPKESTISIPS 430

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 2e-07
 Identities = 47/339 (13%), Positives = 100/339 (29%), Gaps = 92/339 (27%)

Query: 15  RDYFQQQPSTSS-------SSPSILQSLPVHASFDHGYYLLV----KSIQE-LREKKGGI 62
           R   + +P  +         +     +      F+    +L+    K + + L       
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNA------FNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 63  VTVGIGGPSGSGKTSLAEKLASVIGCT--------------LISM------------ENY 96
           +++            +   L   + C                +S+            +N+
Sbjct: 289 ISL-DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 97  R-VGVDE-----GNDLDSIDFDALVQNLQDLT--EGKDTLIPM---------FDYQQKNR 139
           + V  D+      + L+ ++     +    L+        IP                  
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-PSAHIPTILLSLIWFDVIKSDVMV 406

Query: 140 IGSK------VIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGD 193
           + +K      V K      + +    ++   L+  L+   A+    H S++    Y+I  
Sbjct: 407 VVNKLHKYSLVEKQPKESTISI---PSIYLELKVKLENEYAL----HRSIVD--HYNIPK 457

Query: 194 S-CSLDSLIDSIFPLFRKHIEPDLHH-AQIRINNRFVSSFREAIY------KLKCRSEAP 245
           +  S D +   +   F  HI    HH   I    R  + FR  ++      + K R ++ 
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIG---HHLKNIEHPERM-TLFRM-VFLDFRFLEQKIRHDST 512

Query: 246 GACSISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIK 284
            A + S    N  Q   F + Y+       E  +N  + 
Sbjct: 513 -AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Length = 312

 Score = 69.9 bits (171), Expect = 5e-13
 Identities = 31/218 (14%), Positives = 66/218 (30%), Gaps = 39/218 (17%)

Query: 512 ENKGLPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQVKD----- 559
            ++ +P I+G+ G    GK++ A  +  ++         ++V+ + +             
Sbjct: 85  PDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLM 144

Query: 560 FKYDDFSSLDLSLLSKNISDIRNGRRT-KVPIFDLETGARSGFKELEVSEDCGVIIFEGV 618
            +     S +   L + ++ +++G      P++             +V     ++I EG+
Sbjct: 145 HRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPG-AEQVVRHPDILILEGL 203

Query: 619 YALHP----EIRKSLDLWIAVVGGVHSHLISRVQRD-KSRMGCFMSQNDIM--------- 664
             L       +    D  + V   +       V R    R   F                
Sbjct: 204 NVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFADPESHFHHYAAFSDS 263

Query: 665 -----------MTVFPMFQQHIEPHLVHAHLKIRNDFD 691
                          P   ++I P    A L +R D D
Sbjct: 264 QAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDAD 301

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Length = 312

 Score = 61.1 bits (148), Expect = 3e-10
 Identities = 29/199 (14%), Positives = 66/199 (33%), Gaps = 22/199 (11%)

Query: 65  VGIGGPSGSGKTSLAEKLASVIG-------CTLISMENY---------RVGVDEGNDLDS 108
           +G+ G    GK++ A  L +++          L++ + +         R  +      +S
Sbjct: 93  IGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPES 152

Query: 109 IDFDALVQNLQDLTEGKDTL-IPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD----A 163
            +  AL++ +  +  G D    P++ +   + I           ++I++G   L      
Sbjct: 153 YNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTL 212

Query: 164 RLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRI 223
            +  L D  + V   +       V   +    +  +  +S F  +    +     A   I
Sbjct: 213 MVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFADPESHFHHYAAFSDSQAVVAAREI 272

Query: 224 NNRFVS-SFREAIYKLKCR 241
                  +  E I   + R
Sbjct: 273 WRTINRPNLVENILPTRPR 291

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Length = 321

 Score = 64.2 bits (156), Expect = 3e-11
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 18/173 (10%)

Query: 56  REKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-------CTLISMENY--RVGVDEGNDL 106
           + +      +GI G    GK++ +  L +++          +I+ + +       E   L
Sbjct: 86  KPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGL 145

Query: 107 -------DSIDFDALVQNLQDLTEGKDTL-IPMFDYQQKNRIGSKVIKGASSGVVIVDGT 158
                  +S D  +L++ L  +  G+  + IP++ +   + +  +        +VI++G 
Sbjct: 146 MKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGL 205

Query: 159 YAL-DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRK 210
             L     ++L  ++V V     FSL    Q  +     +D ++      F+ 
Sbjct: 206 NILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTTFKD 258

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Length = 321

 Score = 62.7 bits (152), Expect = 1e-10
 Identities = 38/243 (15%), Positives = 79/243 (32%), Gaps = 46/243 (18%)

Query: 494 YDFDRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVV 546
           Y   R  L              +P I+GI G    GK++ +  +  ++         EV+
Sbjct: 69  YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVI 128

Query: 547 SLESYFKS----EQVKDFKYDDF-SSLDLSLLSKNISDIRNGRRT-KVPIFDLETGARSG 600
           + + +  S    E+    K   F  S D+  L + ++ I++G+R  ++P++         
Sbjct: 129 TTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVR 188

Query: 601 FKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVG--------GVHSHLISRVQRDK 651
             + E+ +   ++I EG+  L     +    L + V             + +I +   D+
Sbjct: 189 G-QYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDR 247

Query: 652 SRMGCFMSQNDI-----------------------MMTVFPMFQQHIEPHLVHAHLKIRN 688
                  +  D                                 ++I P+   A L +  
Sbjct: 248 VLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEK 307

Query: 689 DFD 691
             D
Sbjct: 308 AAD 310

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Length = 308

 Score = 60.3 bits (146), Expect = 6e-10
 Identities = 32/225 (14%), Positives = 66/225 (29%), Gaps = 46/225 (20%)

Query: 512 ENKGLPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV---KDFK 561
             + +P I+ I G    GK++ A  +  ++         E+++ + +    QV   +   
Sbjct: 75  NGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLM 134

Query: 562 YD-DF-SSLDLSLLSKNISDIRNGRRT-KVPIFDLETGARSGFKELEVSEDCGVIIFEGV 618
               F  S D+  L K +SD+++G      P++             +      ++I EG+
Sbjct: 135 KKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIP-DGDKTVVQPDILILEGL 193

Query: 619 YALHPE-----------IRKSLDLWIAVVGGVHSHLISRVQRDKSRMG------------ 655
             L              +   +D  I V           + R                  
Sbjct: 194 NVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHN 253

Query: 656 ---------CFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691
                       +        +   +Q+I P    A L +    +
Sbjct: 254 YAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSAN 298

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Length = 308

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 24/139 (17%), Positives = 49/139 (35%), Gaps = 28/139 (20%)

Query: 65  VGIGGPSGSGKTSLAEKLASVIG-------CTLISMENY--RVGVDEGNDL-------DS 108
           + I G    GK++ A  L +++          LI+ + +     V +   L       +S
Sbjct: 83  ISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPES 142

Query: 109 IDFDALVQNLQDLTEGKDTL-IPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL------ 161
            D   LV+ + DL  G   +  P++ +   + I           ++I++G   L      
Sbjct: 143 YDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDY 202

Query: 162 -----DARLRSLLDIRVAV 175
                   +   +D  + V
Sbjct: 203 PHDPHHVFVSDFVDFSIYV 221

>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2 Length = 179

 Score = 46.5 bits (110), Expect = 6e-06
 Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 19/155 (12%)

Query: 253 FQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKA 312
           F   E Q D    +Y   P           +++R         +  + I+D+N     + 
Sbjct: 33  FVRYEEQED----VYFEVPR-------PKLLRIRGVHNLKKYYLTFKEILDENNEEFYEV 81

Query: 313 EFEV--GRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLD-----ETFMVLR 365
           EFE+      +     LG+ + A+ K+         +++    ++ +      E      
Sbjct: 82  EFEIGDFEKAVEVFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIGDFVDIEVISDSP 141

Query: 366 GTNRKTVGAEALRMGINGPW-ITKSYLEMVLEKKG 399
              ++ +   A  +G+       + YLE++ E  G
Sbjct: 142 EEAKEKIWEVAKMLGLKEEDVEPRLYLELINELSG 176

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} Length = 221

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 10/63 (15%)

Query: 53  QELRE--KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSID 110
           ++ RE  ++ G V V I G  GSGKT L E+    IG         ++G     D+ S  
Sbjct: 19  EKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG------NEVKIGAML-GDVVS-K 70

Query: 111 FDA 113
            D 
Sbjct: 71  ADY 73

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* Length = 226

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 10/63 (15%)

Query: 53  QELRE--KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSID 110
            + R+   K G+V     G  GSGKT L EKL   +       + Y++      D+ +  
Sbjct: 27  DKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK------DKYKIACIA-GDVIA-K 78

Query: 111 FDA 113
           FDA
Sbjct: 79  FDA 81

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 8/31 (25%), Positives = 18/31 (58%)

Query: 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 547
           P ++ + G   +GKT+L+  +A  +   ++S
Sbjct: 5   PALIIVTGHPATGKTTLSQALATGLRLPLLS 35

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 40.3 bits (94), Expect = 8e-04
 Identities = 16/118 (13%), Positives = 46/118 (38%), Gaps = 19/118 (16%)

Query: 67  IGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKD 126
           + G   +GKT+L++ LA+ +   L+S + ++  + +G      ++    + +        
Sbjct: 10  VTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWS---RRVGATA---- 62

Query: 127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSLLDIRVAVVGGVHF 181
                          + +++   S  +I++  + +D    R+++L  I       +  
Sbjct: 63  -------IMMLYHTAATILQSGQS--LIMESNFRVDLDTERMQNLHTIAPFTPIQIRC 111

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Length = 180

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 65  VGIGGPSGSGKTSLAEKLASVIGCT------LISMENYRVGVDEGNDLDSIDFDALVQNL 118
           + + G  G GKT+L ++LAS  G        L   E    G DE  D   +D D +V  L
Sbjct: 14  ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDEL 73

Query: 119 QDLTEGKDTLI 129
            +       ++
Sbjct: 74  DNQMREGGVIV 84

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* Length = 230

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 20/148 (13%), Positives = 38/148 (25%), Gaps = 16/148 (10%)

Query: 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFK-----YDDFSSLDLS 571
           P  V I G  GSGKT+  +          +  E   K   V         Y D     + 
Sbjct: 20  PFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMP 79

Query: 572 L----------LSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL 621
                           ++ +     +           +  +   + +     + E    +
Sbjct: 80  FQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFI 139

Query: 622 HPEIRKSLDLWIAVVGGVHSHLISRVQR 649
              I    DL I  +         R+++
Sbjct: 140 EESIHVQADL-IIYLRTSPEVAYERIRQ 166

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	818
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	99.94
3ghx_A	179	Adenylate cyclase CYAB; CYTH domain, antiparallel	99.88
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	99.88
1yem_A	179	Hypothetical protein; structural genomics, southea	99.87
2een_A	183	Hypothetical protein PH1819; dimer, NPPSFA, nation	99.86
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.84
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	99.84
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.84
3n10_A	179	Adenylate cyclase 2; CYTH domain, antiparallel bar	99.84
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.82
2dc4_A	165	PH1012 protein, 165AA long hypothetical protein; d	99.81
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.81
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	99.78
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.78
2aca_A	189	Putative adenylate cyclase; NESG, VPR19, Q87NV8, s	99.77
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	99.76
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.76
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.75
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.74
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.72
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	99.71
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	99.7
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.7
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.69
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	99.69
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.66
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.65
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.64
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.62
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.59
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.51
3bhd_A	234	Thtpase, thiamine triphosphatase; hydrolase, struc	99.48
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.48
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.43
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.4
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.4
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.39
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.37
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.36
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.33
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.3
3v85_A	210	CYTH-like phosphatase; CYTH domain, hydrolase; HET	99.26
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	99.25
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.24
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.21
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.2
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	99.19
3tj7_A	195	GBAA_1210 protein; structural genomics, adenosine	99.19
2gfg_A	193	BH2851; antiparallel barrel, structural genomics,	99.15
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	99.14
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.12
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.1
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.09
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.09
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.08
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.08
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.08
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.06
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	98.98
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	98.96
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	98.96
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.95
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	98.93
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.92
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	98.92
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	98.91
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.9
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	98.89
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.88
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	98.88
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.87
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	98.87
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	98.87
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	98.85
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	98.84
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.83
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	98.83
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.82
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.81
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	98.8
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	98.78
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	98.76
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	98.76
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	98.75
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	98.73
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	98.72
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.72
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	98.69
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	98.67
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.66
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	98.65
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	98.64
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	98.64
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	98.63
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	98.63
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	98.62
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	98.61
1via_A	175	Shikimate kinase; structural genomics, transferase	98.6
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.6
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.58
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.58
2fbl_A	153	Hypothetical protein NE1496; APC5855, PSI, protein	98.57
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	98.57
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.57
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	98.56
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.54
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.54
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.54
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	98.53
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.53
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.52
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	98.52
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.52
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.51
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	98.5
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	98.5
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	98.5
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	98.5
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	98.5
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	98.48
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.47
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.47
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.47
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	98.46
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	98.46
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	98.45
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	98.44
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	98.42
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	98.41
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	98.41
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.4
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	98.39
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	98.38
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.38
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	98.37
2vli_A	183	Antibiotic resistance protein; transferase, tunica	98.35
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.34
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.32
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.32
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.31
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	98.3
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	98.3
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	98.3
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.29
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	98.29
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	98.29
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	98.28
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.27
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.27
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	98.27
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.26
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	98.26
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	98.26
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	98.26
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	98.26
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.24
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.24
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.24
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.23
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	98.23
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.23
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	98.21
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	98.21
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.18
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	98.18
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	98.17
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.17
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.17
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.17
1via_A	175	Shikimate kinase; structural genomics, transferase	98.15
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.15
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.14
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.14
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.14
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	98.12
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	98.11
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.1
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	98.08
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	98.08
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.06
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	98.06
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.05
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	98.03
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.03
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	98.02
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.0
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	98.0
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	98.0
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.97
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.96
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.96
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.94
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.93
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.91
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.9
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.9
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.83
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.82
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.77
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	97.77
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.77
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	97.75
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.74
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.73
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.72
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.67
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.65
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.65
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.61
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.61
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.6
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.58
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	97.57
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.49
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	97.43
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	97.42
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.41
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.41
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.35
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.34
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.34
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.29
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.27
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.27
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.25
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.24
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.22
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.21
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.15
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	97.15
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.13
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.12
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.11
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.11
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.08
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.07
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	97.03
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.03
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.95
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.92
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.91
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.91
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.91
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	96.9
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.79
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	96.76
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.71
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.65
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.55
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.49
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.45
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.44
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	96.37
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.35
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.34
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.33
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.32
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.32
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.16
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.15
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.14
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.08
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.06
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.02
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.01
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.0
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.97
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.97
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.93
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.92
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.91
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.9
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.89
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.86
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.85
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.84
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	95.81
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	95.79
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.77
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.71
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	95.71
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.68
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	95.65
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.64
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.64
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.62
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	95.61
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.58
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	95.57
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.56
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.56
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.53
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.5
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	95.49
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.47
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.45
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.45
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	95.44
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.41
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.41
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.4
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.4
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	95.38
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.36
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	95.36
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.36
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.36
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.35
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	95.34
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.33
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.33
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.32
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.31
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.3
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	95.27
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	95.26
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	95.25
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.24
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.24
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.24
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.21
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.21
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.21
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.21
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.2
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.2
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.17
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.15
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.15
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.14
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.09
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.07
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.05
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.05
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.04
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	95.03
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	95.03
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.01
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	95.01
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.0
4a74_A	231	DNA repair and recombination protein RADA; hydrola	94.98
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	94.97
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	94.95
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	94.95
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	94.95
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	94.94
2og2_A	359	Putative signal recognition particle receptor; nuc	94.93
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	94.92
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	94.91
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	94.9
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	94.9
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	94.9
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	94.9
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	94.88
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	94.87
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.87
3bos_A	242	Putative DNA replication factor; P-loop containing	94.86
4a74_A	231	DNA repair and recombination protein RADA; hydrola	94.86
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	94.85
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	94.84
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	94.83
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	94.83
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	94.82
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	94.81
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	94.8
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	94.78
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	94.77
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.77
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	94.77
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	94.77
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	94.74
2og2_A	359	Putative signal recognition particle receptor; nuc	94.72
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	94.71
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	94.71
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	94.71
1b0u_A	262	Histidine permease; ABC transporter, transport pro	94.7
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	94.7
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	94.68
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	94.68
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	94.68
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	94.68
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	94.66
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	94.66
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	94.65
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	94.63
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	94.62
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	94.59
1ji0_A	240	ABC transporter; ATP binding protein, structural g	94.59
1g6h_A	257	High-affinity branched-chain amino acid transport	94.57
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	94.55
1b0u_A	262	Histidine permease; ABC transporter, transport pro	94.55
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	94.54
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	94.54
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	94.53
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	94.53
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	94.52
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	94.51
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	94.51
3bos_A	242	Putative DNA replication factor; P-loop containing	94.51
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	94.5
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	94.5
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	94.5
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	94.5
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.49
1sgw_A	214	Putative ABC transporter; structural genomics, P p	94.49
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	94.48
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	94.45
1ji0_A	240	ABC transporter; ATP binding protein, structural g	94.42
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	94.4
2ghi_A	260	Transport protein; multidrug resistance protein, M	94.4
1g6h_A	257	High-affinity branched-chain amino acid transport	94.4
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	94.39
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	94.39
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	94.37
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	94.37
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	94.35
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	94.35
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	94.34
1sgw_A	214	Putative ABC transporter; structural genomics, P p	94.34
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	94.34
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	94.31
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	94.31
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	94.31
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	94.3
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	94.3
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	94.29
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	94.28
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	94.25
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	94.25
2ghi_A	260	Transport protein; multidrug resistance protein, M	94.25
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	94.24
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	94.24
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	94.24
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	94.24
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	94.22
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	94.21
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	94.2
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	94.19
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	94.19
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	94.18
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	94.17
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	94.16
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	94.14
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	94.13
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	94.13
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	94.13
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	94.11
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	94.1
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	94.08
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	94.08
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	94.05
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	94.04
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	94.03
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	94.02
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	94.01
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	94.0
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	93.99
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	93.97
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	93.94
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	93.92
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	93.91
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	93.9
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	93.9
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	93.9
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	93.9
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	93.89
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	93.89
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	93.88
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	93.87
2cvh_A	220	DNA repair and recombination protein RADB; filamen	93.85
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	93.84
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	93.84
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	93.83
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	93.82
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	93.81
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	93.8
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	93.79
2ewv_A	372	Twitching motility protein PILT; pilus retraction	93.76
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	93.76
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	93.75
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	93.74
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	93.73
3kta_A	182	Chromosome segregation protein SMC; structural mai	93.72
3kta_A	182	Chromosome segregation protein SMC; structural mai	93.71
2ewv_A	372	Twitching motility protein PILT; pilus retraction	93.7
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	93.7
2hf9_A	226	Probable hydrogenase nickel incorporation protein	93.66
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	93.65
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	93.64
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	93.64
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	93.63
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	93.62
2cvh_A	220	DNA repair and recombination protein RADB; filamen	93.62
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	93.6
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	93.59
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	93.56
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	93.56
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	93.55
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	93.52
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	93.52

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=99.94  E-value=6.1e-27  Score=254.67  Aligned_cols=241  Identities=17%  Similarity=0.219  Sum_probs=178.5

Q ss_pred             cccccccceecccCCCCCCc--ccccCCCcccceecccCCCCc-chhhhhHHHHHHHHHH-------HH--cCCCCEEEe
Q 003460          454 MEPVLATWHFISSDPSHAGS--SVIGSSSFRDTVKLVPMPDSY-DFDRGLLLSVQAIQAL-------LE--NKGLPVIVG  521 (818)
Q Consensus       454 ~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~i~~l-------~~--~~~~p~iIg  521 (818)
                      +.....+|+.+..+.+++|+  ++.+..++.+.+.+..+.+-| ++.+.+.+.....+.+       ..  ..+.|++||
T Consensus        17 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~pl~rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iig   96 (321)
T 3tqc_A           17 LQFNRQQWGNFRKDTPLTLTESDLDKLQGQIEIVSLKEVTEIYLPLSRLLSFYVTARQTLQQATYQFLGKPEPKVPYIIG   96 (321)
T ss_dssp             EEEEHHHHTC------CCCCHHHHHHTTTTHHHHCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEE
T ss_pred             eEECHHHHHHHhcCCCCCCCHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhccCCCCCCEEEE
Confidence            45788999966666676666  566667777777664443433 3333333333222222       12  245789999


Q ss_pred             eeCCCCccHHHHHHHHHHHhC-------Ccccccccccchhhh----h-cccCCCcccccHHHHHHHHHHHhcCC-ceec
Q 003460          522 IGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----K-DFKYDDFSSLDLSLLSKNISDIRNGR-RTKV  588 (818)
Q Consensus       522 IsG~sGSGKTTla~~L~~~lg-------~~vis~Ddfy~~~~~----~-~~~~d~p~t~D~~ll~~~L~~L~~g~-~v~~  588 (818)
                      |+||+||||||+++.|+..++       +.++++|+||.+...    . ..+++.|+++|.+++.+.|..+++|+ .+.+
T Consensus        97 I~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~  176 (321)
T 3tqc_A           97 IAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRI  176 (321)
T ss_dssp             EECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEE
T ss_pred             EECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHHHhhhcccccccc
Confidence            999999999999999999875       567999999987432    1 12467899999999999999999999 8999


Q ss_pred             ccccccccccCCCcceeeecCCcEEEEEecccchHh-----------hhhcCCEEEEEEcChhHHHHHHHhcCccccCcc
Q 003460          589 PIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-----------IRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCF  657 (818)
Q Consensus       589 P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~-----------l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~  657 (818)
                      |.||+.++++.+. .+....+.+|||+||++++++.           +.+.+|++|||+++.++++.|++.||...+|..
T Consensus       177 P~yd~~~~~r~~~-~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~r~~a  255 (321)
T 3tqc_A          177 PVYSHHYYDIVRG-QYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTT  255 (321)
T ss_dssp             EEEETTTTEEEEE-EEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTG
T ss_pred             chhhhhccccccC-ceeeccCCCEEEEEccccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHHHHhcchhhhhh
Confidence            9999999998742 3444567899999999999844           889999999999999999999999998877632


Q ss_pred             cc---------------h------hhHHHhhcchhhhhccccCCcccEEEeCCCCCccC
Q 003460          658 MS---------------Q------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLS  695 (818)
Q Consensus       658 ~~---------------~------~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~  695 (818)
                      ..               +      .+|.....|.+++||.|++.+||+||+.+-+....
T Consensus       256 ~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~Adlil~~g~~~~v~  314 (321)
T 3tqc_A          256 FKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKAADHSIQ  314 (321)
T ss_dssp             GGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEEECTTSCEE
T ss_pred             ccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccCceEEEecCCCCcEE
Confidence            11               0      12223346999999999999999999887666443

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=99.88  E-value=2.8e-22  Score=217.99  Aligned_cols=198  Identities=15%  Similarity=0.178  Sum_probs=161.0

Q ss_pred             cccCCcccccch---hhHHHHHHHHHHH--------------H--hcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----
Q 003460           32 LQSLPVHASFDH---GYYLLVKSIQELR--------------E--KKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----   87 (818)
Q Consensus        32 ~~~~~~~~s~~~---~~~~l~~~i~~~~--------------~--~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----   87 (818)
                      ++++++.+|.++   +|.++++.+....              +  ....+++|||+|++||||||+++.|+..++     
T Consensus        43 ~~~~~~~~~~~~v~~~y~pl~rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~  122 (321)
T 3tqc_A           43 LQGQIEIVSLKEVTEIYLPLSRLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDH  122 (321)
T ss_dssp             TTTTHHHHCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTC
T ss_pred             hhCCCCCcCHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCC
Confidence            678889999876   8999998885433              1  124578999999999999999999999874     


Q ss_pred             --CeEEeccceecc---------cccCCCCCcccHHHHHHHHHhhhcCC-ccccccchhhhhccccccccccCCccEEEE
Q 003460           88 --CTLISMENYRVG---------VDEGNDLDSIDFDALVQNLQDLTEGK-DTLIPMFDYQQKNRIGSKVIKGASSGVVIV  155 (818)
Q Consensus        88 --~~vI~~D~~~~~---------~~~~~~~~~~d~~~l~~~L~~l~~~~-~i~~p~~d~~~~~~~~~~~~~~~~~~vVIv  155 (818)
                        +.++++|+||..         ....+.|+++|.+.+.+.|..+..|+ .+.+|.|++..+++...........+++|+
T Consensus       123 ~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIv  202 (321)
T 3tqc_A          123 PNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVIL  202 (321)
T ss_dssp             CCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEE
T ss_pred             CeEEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEE
Confidence              577999999752         12356789999999999999999998 899999999999987544445566789999


Q ss_pred             Eecccchhh-----------hhcCCCEEEEEEcCHHHHHHHHHHhccCCC----------------cCHHHHHH---h--
Q 003460          156 DGTYALDAR-----------LRSLLDIRVAVVGGVHFSLISKVQYDIGDS----------------CSLDSLID---S--  203 (818)
Q Consensus       156 EG~~l~~~~-----------l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~----------------~s~e~~~~---~--  203 (818)
                      ||+++++..           +.+++|++|||+++.++++.|++.||...+                .+.+++.+   .  
T Consensus       203 EGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w  282 (321)
T 3tqc_A          203 EGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVW  282 (321)
T ss_dssp             ECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHH
T ss_pred             EccccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHHHHhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHH
Confidence            999999854           889999999999999999999999994321                23333332   1  


Q ss_pred             ---hchhhhhccCCccccCcEEEECCCCC
Q 003460          204 ---IFPLFRKHIEPDLHHAQIRINNRFVS  229 (818)
Q Consensus       204 ---~~p~~~~~Iep~~~~ADiII~N~~~~  229 (818)
                         ..|+++++|.|++.+||+|++.+-..
T Consensus       283 ~~~~~pn~~~~I~ptr~~Adlil~~g~~~  311 (321)
T 3tqc_A          283 NEINKVNLMENILPYKNRAQLILEKAADH  311 (321)
T ss_dssp             HHTHHHHHHHHTGGGGGGCSEEEEECTTS
T ss_pred             HhccccCHHHhCccCccCceEEEecCCCC
Confidence               26899999999999999999877543

>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2

Probab=99.87  E-value=3.6e-22  Score=199.69  Aligned_cols=135  Identities=18%  Similarity=0.264  Sum_probs=115.7

Q ss_pred             ccccccccccccceeeccCCCCCcchhhhccCCeeeEee--eCCEEEEEEcceeecCCCcccCceeEEEEec----cHHH
Q 003460          249 SISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQ--SGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLG  322 (818)
Q Consensus       249 ~~~~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~--~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~  322 (818)
                      .++.+.....|.|.||+.|++           .|||||.  .+++..||||||. + +..  +.+.|+|+.|    .|.+
T Consensus        29 lg~~~~~~~~Q~d~Yfd~p~~-----------~~LRIR~~~~~~~~~lT~K~p~-~-g~~--k~~~E~e~~v~d~~~~~~   93 (179)
T 1yem_A           29 FNPEFVRYEEQEDVYFEVPRP-----------KLLRIRGVHNLKKYYLTFKEIL-D-ENN--EEFYEVEFEIGDFEKAVE   93 (179)
T ss_dssp             TCCEEEEEEEEEEEEECCCTT-----------EEEEEEEETTTTEEEEEEEEEC-S-SSS--CEEEEEEEEESCHHHHHH
T ss_pred             cCCccCcceEEEEEEEcCCCC-----------CEEEEEEEcCCCeEEEEEeccC-C-CCc--cceeEEEEEeCCHHHHHH
Confidence            344667778899999999876           4569995  4889999999998 4 443  9999999999    7889


Q ss_pred             HHHhcCCceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEecC------HHHHHHHHHHcCCCCCc-cchhHHHHHH
Q 003460          323 GLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTN------RKTVGAEALRMGINGPW-ITKSYLEMVL  395 (818)
Q Consensus       323 ~L~~LGf~~~~~~~K~R~~~~~~~~~i~lD~v~~lg~~fvEiE~~~------~~~i~~~~~~Lgl~~~~-~~~sYlel~l  395 (818)
                      +|..|||.+...++|.|..|.+++++|+||+++|+|. |+|||...      .+.+.+++++|||+.+. +++||+||++
T Consensus        94 iL~~LG~~~~~~i~K~R~~~~~~~~~i~lD~~~~lG~-f~EIE~~~~~~e~~~~~~~~ll~~LGi~~~~~~~~sY~eLl~  172 (179)
T 1yem_A           94 VFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIGD-FVDIEVISDSPEEAKEKIWEVAKMLGLKEEDVEPRLYLELIN  172 (179)
T ss_dssp             HHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECSCHHHHHHHHHHHHHHTTCCGGGBCCSCTTTTC-
T ss_pred             HHHHCCCcEEEEEEEEEEEEEECCEEEEEEecCCCCC-EEEEEEecCChHHHHHHHHHHHHHcCCChhhceehhHHHHHH
Confidence            9999999999999999999999999999999999997 99999874      57899999999999874 9999999998


Q ss_pred             hhcC
Q 003460          396 EKKG  399 (818)
Q Consensus       396 ~~~~  399 (818)
                      ++.+
T Consensus       173 ~~~~  176 (179)
T 1yem_A          173 ELSG  176 (179)
T ss_dssp             ----
T ss_pred             hhhc
Confidence            8654

>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}

Probab=99.86  E-value=1e-21  Score=197.34  Aligned_cols=142  Identities=20%  Similarity=0.313  Sum_probs=123.3

Q ss_pred             cccccccccccceeeccCCCCCcchhhhccCCeeeEe----eeCCEEEEEEcceeecCCCcccCceeEEEEecc-----H
Q 003460          250 ISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMR----QSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRM-----T  320 (818)
Q Consensus       250 ~~~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR----~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v~-----~  320 (818)
                      ++.+.....|.|+|||+|+++++.++.++     |||    ..+++..+|||||..++..   +.|.|+|+.|.     +
T Consensus        21 ~~~~~~~~~q~d~YfDtp~~~L~~~~~~L-----RiR~~~~~~~~~~~lT~K~p~~~~~~---~~r~E~e~~v~~~~~~~   92 (183)
T 2een_A           21 TFEFMRKEIHEDIYYQHPCRDFSKTDEAL-----RIRIKRFNGHNEVFLTYKGPKIDEKS---KTRLEIEVEIQEDVDKY   92 (183)
T ss_dssp             TSEEEEEEEEEEEEEECSSSCHHHHTCEE-----EEEEEEETTEEEEEEEEEEEECCTTS---CCEEEEEEEECSCHHHH
T ss_pred             cCccCccEEEEEeEEcCCCccHHhCCeEE-----EEeeeecCCCCEEEEEECCCcCCCCc---eeEEEEEEeecCCHHHH
Confidence            34555667899999999999999999888     999    4467899999999875443   89999999996     8


Q ss_pred             HHHHHhcCCceeEEEEEEEEEEEeC-CEEEEEeccCCCCCCeEEEEec--C-------HHHHHHHHHHcCCCCCccchhH
Q 003460          321 LGGLLDLGYSVVASYKRASTYVVYG-NLSVSFETIDTLDETFMVLRGT--N-------RKTVGAEALRMGINGPWITKSY  390 (818)
Q Consensus       321 ~~~L~~LGf~~~~~~~K~R~~~~~~-~~~i~lD~v~~lg~~fvEiE~~--~-------~~~i~~~~~~Lgl~~~~~~~sY  390 (818)
                      .++|..|||.++++++|.|+.|.++ +++|+||+++++|. |+|||..  +       .+.+.+++++||| .+.+++||
T Consensus        93 ~~~L~~lgl~~~~~~~k~R~~~~~~~~~~v~lD~~~~lg~-f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi-~~~~~~sY  170 (183)
T 2een_A           93 FELLDRLGFKEVLKVVKTREKYYVEKGVTITLDEVEGLGK-FIEIETLVKEKDEIPEAVEKLEKILRELGV-EKFERRSY  170 (183)
T ss_dssp             HHHHHHTTCEEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECSSGGGHHHHHHHHHHHHHHHTC-CCBCCSCH
T ss_pred             HHHHHHCCCeEEEEEEEEEEEEEeCCCEEEEEEeecCCee-EEEEEEecCCcccHHHHHHHHHHHHHHcCC-CCceeccH
Confidence            9999999999999999999999999 99999999999999 9999986  1       2678999999999 66799999


Q ss_pred             HHHHHhhcCCC
Q 003460          391 LEMVLEKKGVP  401 (818)
Q Consensus       391 lel~l~~~~~~  401 (818)
                      ++|++++.+.+
T Consensus       171 ~ell~~~~~~~  181 (183)
T 2een_A          171 LELLLEKRTEL  181 (183)
T ss_dssp             HHHHHHTC---
T ss_pred             HHHHHhhhhhc
Confidence            99999876543

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.84  E-value=3.5e-21  Score=209.13  Aligned_cols=176  Identities=19%  Similarity=0.193  Sum_probs=142.6

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhC-------Ccccccccccchhhh-h---c-ccCCCcccccHHHHHHHHHHHhc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV-K---D-FKYDDFSSLDLSLLSKNISDIRN  582 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg-------~~vis~Ddfy~~~~~-~---~-~~~d~p~t~D~~ll~~~L~~L~~  582 (818)
                      +++.+|||+|++|||||||++.|+..++       +.++++|+++.+... .   - ..++.+.++|...+...+..+..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l~~  157 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKS  157 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEeecCCCCCCccHHHHHHHHHHHhC
Confidence            5678999999999999999999999876       668899999875321 1   1 13566889999999999999999


Q ss_pred             CCc-eecccccccccccCCCcceeeecCCcEEEEEecccchH-----------hhhhcCCEEEEEEcChhHHHHHHHhcC
Q 003460          583 GRR-TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP-----------EIRKSLDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       583 g~~-v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~-----------~l~~~~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                      |+. +.+|.||+..+++.+. .+....+.++||+||++++++           .+.+.+|.+|||++|.+.++.|++.|+
T Consensus       158 ~~~~i~~P~~~~~~~~~~~~-~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~  236 (308)
T 1sq5_A          158 GVPNVTAPVYSHLIYDVIPD-GDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRF  236 (308)
T ss_dssp             TCSCEEECCEETTTTEECTT-CCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHH
T ss_pred             CCCceecccccccccCcccc-cceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHHH
Confidence            988 9999999999988753 233334568999999999975           688999999999999999999999997


Q ss_pred             ccc---------------cCcccch------hhHHHhhcchhhhhccccCCcccEEEeCCCC
Q 003460          651 KSR---------------MGCFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD  691 (818)
Q Consensus       651 ~~~---------------rg~~~~~------~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~  691 (818)
                      ...               +|.+.++      .||...++|++.+||+|++.+||+||+|+-+
T Consensus       237 ~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~~~  298 (308)
T 1sq5_A          237 LKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSAN  298 (308)
T ss_dssp             HHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECGG
T ss_pred             HHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEEeCCC
Confidence            532               2444332      3455667899999999999999999998743

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=99.84  E-value=2.2e-21  Score=208.95  Aligned_cols=174  Identities=15%  Similarity=0.284  Sum_probs=135.5

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccc-hhhh---------h--cccCCC--cccccHHHHHH
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK-SEQV---------K--DFKYDD--FSSLDLSLLSK  575 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~-~~~~---------~--~~~~d~--p~t~D~~ll~~  575 (818)
                      .++++|||+||+||||||+|+.|++.+|     +.++++|+||+ +...         .  ..+++.  |+++|.+.+.+
T Consensus         3 ~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~   82 (290)
T 1a7j_A            3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELER   82 (290)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHH
Confidence            3577899999999999999999999887     78999999997 2211         1  124444  99999999999


Q ss_pred             HHHHHhcCCceecccccc-----cccccCCC--cceeee-cCCcEEEEEecccc----hHhhhhcCCEEEEEEcChhHHH
Q 003460          576 NISDIRNGRRTKVPIFDL-----ETGARSGF--KELEVS-EDCGVIIFEGVYAL----HPEIRKSLDLWIAVVGGVHSHL  643 (818)
Q Consensus       576 ~L~~L~~g~~v~~P~yD~-----~~~~r~~~--~~~~~~-~~~~vvIvEG~~~~----~~~l~~~~D~~I~v~~~~d~rl  643 (818)
                      .+..+..++.+..|.|++     ..+.+...  ..|... .+.+++|+||++++    +..+.+.+|++|||+++.++++
T Consensus        83 ~l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl  162 (290)
T 1a7j_A           83 VFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEW  162 (290)
T ss_dssp             HHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHH
T ss_pred             HHHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHH
Confidence            999999999999999965     33433321  112222 35789999999998    3568889999999999999999


Q ss_pred             HHHHhcCccccCcccch--hhHHHhhcchhhhhccccCCcccE------EEeCC
Q 003460          644 ISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHL------KIRND  689 (818)
Q Consensus       644 ~Rri~Rd~~~rg~~~~~--~~~~~~v~p~~~~~I~p~~~~ADi------vI~n~  689 (818)
                      .|++.||..+||.+.++  ..+... .|.+.+||+|.+..||+      +|+|+
T Consensus       163 ~Rrl~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~~~~~~~vIDns  215 (290)
T 1a7j_A          163 IQKIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDINFQRVPVVDTS  215 (290)
T ss_dssp             HHHHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSEEEEEEESSCCS
T ss_pred             HHHhhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCEeeccCceecCC
Confidence            99999999999988775  334444 89999999999999999      66665

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.84  E-value=8.4e-21  Score=199.90  Aligned_cols=172  Identities=27%  Similarity=0.496  Sum_probs=142.0

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCc----------ccccccccch---h-----hhhcccCCCcccccHHHHHH
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCE----------VVSLESYFKS---E-----QVKDFKYDDFSSLDLSLLSK  575 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~----------vis~Ddfy~~---~-----~~~~~~~d~p~t~D~~ll~~  575 (818)
                      .++|++|||+|++||||||+|+.|++.+|..          ++++|+||+.   .     ..+...|++|+++|.+++.+
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~   98 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILK   98 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHH
Confidence            4578999999999999999999999999977          7999999974   1     12346788999999999999


Q ss_pred             HHHHHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccc-hHhhhhcCCEEEEEEcChhHHHHHHHhcCcccc
Q 003460          576 NISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM  654 (818)
Q Consensus       576 ~L~~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~-~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~r  654 (818)
                      .|..+..|..+..|.||+.++.+..  .+....+.++||+||++++ .+.+.+.+|.+||++++.++++.|+..|+...+
T Consensus        99 ~L~~l~~~~~v~~~~~d~~~~~~~~--~~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~r  176 (252)
T 1uj2_A           99 TLKEITEGKTVQIPVYDFVSHSRKE--ETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISER  176 (252)
T ss_dssp             HHHHHHTTCCEEEEEEETTTTEEEE--EEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHcCCeeecCccccccccCCC--ceeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999999987762  2333345689999999997 578888899999999999999999999986556


Q ss_pred             Ccccch--hhHHHhhcchhhhhccccCCcccEEEe
Q 003460          655 GCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIR  687 (818)
Q Consensus       655 g~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~  687 (818)
                      |.+.+.  .++.....+.+..+++|.+..||++|+
T Consensus       177 g~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~  211 (252)
T 1uj2_A          177 GRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIP  211 (252)
T ss_dssp             CCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEE
T ss_pred             CCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEe
Confidence            655443  244445667788899999999999994

>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A

Probab=99.84  E-value=8.8e-21  Score=189.87  Aligned_cols=129  Identities=12%  Similarity=0.151  Sum_probs=114.6

Q ss_pred             ccccccccccceeeccCCCCCcchhhhccCCeeeEeee--CCEEEEEEcceeecCCCcccCceeEEEEec----cHHHHH
Q 003460          251 SAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQS--GIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGL  324 (818)
Q Consensus       251 ~~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~--~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~~L  324 (818)
                      ..+.....|.|+||++|+++++.++.++     |||..  +...++|||||         +.+.|.++.|    .+..+|
T Consensus        33 ~~~~~~~~q~d~Yfd~p~~~l~~~~~~l-----RiR~~~~~~~~~lt~kg~---------~~~~e~e~~v~~~~~~~~~l   98 (179)
T 3n10_A           33 TAFTLNNHEKDIYLDANGQDLAKQQISM-----VLREMNPSGIRLWIVKGP---------GAERCEASNIEDVSKVQSML   98 (179)
T ss_dssp             EEEEEEEEEEEEEEECTTCTTGGGTCEE-----EEEEEETTCCEEEEEECS---------SSSBEEEEECSCHHHHHHHH
T ss_pred             ccccceEEEEEEEEeCCChhHHhCCceE-----EEEecCCCceEEEEEcCC---------ccccceeeccCCHHHHHHHH
Confidence            3556677899999999999999988888     99976  45788999976         3567888888    899999


Q ss_pred             HhcCCceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec--CH-------HHHHHHHHHcCCCCCc-cchhHHHHH
Q 003460          325 LDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR-------KTVGAEALRMGINGPW-ITKSYLEMV  394 (818)
Q Consensus       325 ~~LGf~~~~~~~K~R~~~~~~~~~i~lD~v~~lg~~fvEiE~~--~~-------~~i~~~~~~Lgl~~~~-~~~sYlel~  394 (818)
                      ..|||.++++++|.|++|.+++++|+||+|+++|. |+|||..  +.       +.+.+++++|||+.+. +++||+|||
T Consensus        99 ~~lg~~~~~~~~k~R~~~~~~~~~v~lD~v~~lG~-f~EiE~e~~~~~~~~~~~~~~~~l~~~LGl~~~~~~~~sY~eLL  177 (179)
T 3n10_A           99 ATLGYHPAFTIEKQRSIYFVGKFHITVDHLTGLGD-FAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSYRQLL  177 (179)
T ss_dssp             HHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCHHHHH
T ss_pred             HhCCCeEEEEEEEEEEEEEECCEEEEEEeccCCCc-EEEEEEEeCCCccHHHHHHHHHHHHHHcCcChhhcceecHHHHh
Confidence            99999999999999999999999999999999999 9999987  22       5689999999999866 899999997

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.82  E-value=2.1e-20  Score=201.17  Aligned_cols=179  Identities=18%  Similarity=0.277  Sum_probs=136.5

Q ss_pred             cCCCCEEEeeeCCCCccHHHHHHHHHHHhC-------Cccc-ccccccchhhhh-cc-----------cCCCcccccHHH
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVV-SLESYFKSEQVK-DF-----------KYDDFSSLDLSL  572 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~lg-------~~vi-s~Ddfy~~~~~~-~~-----------~~d~p~t~D~~l  572 (818)
                      ..+++.+|||+|+|||||||+++.|+..++       +.++ ++|+||.+.... ..           .++.|+++|.++
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~  106 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKL  106 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHH
Confidence            456789999999999999999999998874       4456 999999874321 11           134699999999


Q ss_pred             HHHHHHHHhcC------Cceecccccccc----cccCCCcceeeecCCcEEEEEecccch-Hh-----------------
Q 003460          573 LSKNISDIRNG------RRTKVPIFDLET----GARSGFKELEVSEDCGVIIFEGVYALH-PE-----------------  624 (818)
Q Consensus       573 l~~~L~~L~~g------~~v~~P~yD~~~----~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~-----------------  624 (818)
                      +.+.|..|+.|      +.+.+|.||+..    ++|.+...+... +.+|+|+||++++. +.                 
T Consensus       107 l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~~~~~~~~~~~~l~~~  185 (290)
T 1odf_A          107 LQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQGIENNDLLTGDMVDV  185 (290)
T ss_dssp             HHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCSCTTTCSSSCTTHHHH
T ss_pred             HHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccchhhhhcccchhhHHHH
Confidence            99999999998      778999999999    888765445555 78999999999853 32                 


Q ss_pred             ----------hhhcCCEE---EEEEcChhHHHHH-HHhc--C-cccc--Ccccch-hhHHHhhcchhhhhccccC-----
Q 003460          625 ----------IRKSLDLW---IAVVGGVHSHLIS-RVQR--D-KSRM--GCFMSQ-NDIMMTVFPMFQQHIEPHL-----  679 (818)
Q Consensus       625 ----------l~~~~D~~---I~v~~~~d~rl~R-ri~R--d-~~~r--g~~~~~-~~~~~~v~p~~~~~I~p~~-----  679 (818)
                                +++++|++   |||+++.+.++.| |++|  | ..++  |.+.++ .+|...++|+|+.|++|..     
T Consensus       186 n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v~~~~~~~~p~y~~~~~~~~~~~~~  265 (290)
T 1odf_A          186 NAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDRYMPSYKLYLNDFVRSESL  265 (290)
T ss_dssp             HHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHHHHHHTTHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchHHHHhHHHHHhccC
Confidence                      34445555   9999988777776 8888  5 3345  676665 5788889998888876532     


Q ss_pred             -CcccEEEeCCCCC
Q 003460          680 -VHAHLKIRNDFDP  692 (818)
Q Consensus       680 -~~ADivI~n~~~~  692 (818)
                       ..||+++..+-+.
T Consensus       266 ~~~adlvl~~~~~~  279 (290)
T 1odf_A          266 GSIATLTLGIDSNR  279 (290)
T ss_dssp             SSSEEEEEEECTTS
T ss_pred             CCCCCEEEEECCCC
Confidence             3799998755443

>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii}

Probab=99.81  E-value=1.1e-19  Score=179.58  Aligned_cols=129  Identities=19%  Similarity=0.263  Sum_probs=112.3

Q ss_pred             cccccccccceeeccCCCCCcchhhhccCCeeeEee--eCCEEEEEEcceeecCCCcccCceeEEEEec----cHHHHHH
Q 003460          252 AFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQ--SGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGLL  325 (818)
Q Consensus       252 ~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~--~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~~L~  325 (818)
                      .+.....|.|.||++|++           .+||||.  .++++.||||||. + +..  +.+.|+|+.|    .+.++|.
T Consensus        24 ~~~~~~~q~d~Yfdt~~~-----------~~LRiR~~~~~~~~~lT~K~~~-~-g~~--~~~~E~e~~i~~~~~~~~~L~   88 (165)
T 2dc4_A           24 KFFGIEEQEDVYFELPSP-----------KLLRVRKINNTGKSYITYKEIL-D-KRN--EEFYELEFEVQDPEGAIELFK   88 (165)
T ss_dssp             EEEEEEEEEEEEECCSTT-----------EEEEEEEETTTTEEEEEEEEEC-S-SSS--CEEEEEEEEBSCHHHHHHHHH
T ss_pred             CcCcceeEEEEEEcCCCC-----------CEEEEEEEcCCCEEEEEEeCcC-C-CCc--eeeeEEEEEcCCHHHHHHHHH
Confidence            344456799999999876           3559995  4899999999988 4 443  8999999999    7888999


Q ss_pred             hcCCceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEecC------HHHHHHHHHHcCCCCCc-cchhHHHHHHh
Q 003460          326 DLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTN------RKTVGAEALRMGINGPW-ITKSYLEMVLE  396 (818)
Q Consensus       326 ~LGf~~~~~~~K~R~~~~~~~~~i~lD~v~~lg~~fvEiE~~~------~~~i~~~~~~Lgl~~~~-~~~sYlel~l~  396 (818)
                      .|||.+...++|.|..|.+++++++||.++|+|. |+|||...      .+.+.+++++|||+.+. +++||++|+++
T Consensus        89 ~lg~~~~~~~~k~R~~~~~~~~~i~lD~~~~~g~-~~EiE~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~ell~~  165 (165)
T 2dc4_A           89 RLGFKVQGVVKKRRWIYKLNNVTFELNRVEKAGD-FLDIEVITSNPEEGKKIIWDVARRLGLKEEDVEPKLYIELING  165 (165)
T ss_dssp             HTTCCEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEECCSCHHHHHHHHHHHHHHTTCCGGGBCCSCHHHHCC-
T ss_pred             HcCCcEEEEEEEEEEEEEECCEEEEEEecCCCcc-EEEEEEEcCCHHHHHHHHHHHHHHcCCCcccceehhHHHHhhC
Confidence            9999999999999999999999999999999997 99999874      47899999999999874 99999999864

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.81  E-value=2.2e-19  Score=195.19  Aligned_cols=238  Identities=18%  Similarity=0.247  Sum_probs=169.4

Q ss_pred             cccccccceecccCCCCCCc--ccccCCCcccceecccCCCCc-chhhhhHHHHHHHHHHH-------------HcCCCC
Q 003460          454 MEPVLATWHFISSDPSHAGS--SVIGSSSFRDTVKLVPMPDSY-DFDRGLLLSVQAIQALL-------------ENKGLP  517 (818)
Q Consensus       454 ~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~i~~l~-------------~~~~~p  517 (818)
                      ......+|+.++...+..++  +.....++.+.+.+..+-..| +..+.+.+.+.+.+.+.             ...+.+
T Consensus        11 ~~~~r~~~~~l~~~~~~~~~~~~~~~l~~~~~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g   90 (312)
T 3aez_A           11 VEFDRRQWRALRMSTPLALTEEELVGLRGLGEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVP   90 (312)
T ss_dssp             EEEEHHHHHGGGTTCCCCCCHHHHHTTCCTTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCC
T ss_pred             eeECHHHHHHHHhcCCCCCCHHHHHhccCCCCeEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCC
Confidence            45778999955555555554  444444566655554333333 22222222222222222             014678


Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhC-------Ccccccccccchhhh----hcc-cCCCcccccHHHHHHHHHHHhcCCc
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----KDF-KYDDFSSLDLSLLSKNISDIRNGRR  585 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg-------~~vis~Ddfy~~~~~----~~~-~~d~p~t~D~~ll~~~L~~L~~g~~  585 (818)
                      .+|||.||+|||||||++.|+..+.       +.++++|+||.+...    ... .++.|.++|.+.+.+.|..+..|..
T Consensus        91 ~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~  170 (312)
T 3aez_A           91 FIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSD  170 (312)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCS
T ss_pred             EEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcc
Confidence            9999999999999999999998763       458899999876421    111 2467889999999999999987765


Q ss_pred             -eecccccccccccCCCcceeeecCCcEEEEEecccch----HhhhhcCCEEEEEEcChhHHHHHHHhcCcccc------
Q 003460          586 -TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM------  654 (818)
Q Consensus       586 -v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~----~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~r------  654 (818)
                       ...|.|++..+.|... ......+.+|+|+||++++.    +.+.+.+|++|||+++.+.++.|++.|+...|      
T Consensus       171 ~~~~~~lS~G~~qRv~~-a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r~  249 (312)
T 3aez_A          171 YACAPVYSHLHYDIIPG-AEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFAD  249 (312)
T ss_dssp             CEEEEEEETTTTEEEEE-EEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGGS
T ss_pred             cCCcccCChhhhhhhhh-HHHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhccccC
Confidence             8889999999888753 23345567999999999986    57899999999999999999999998854322      


Q ss_pred             ---------Ccccch------hhHHHhhcchhhhhccccCCcccEEEeCCCCC
Q 003460          655 ---------GCFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDP  692 (818)
Q Consensus       655 ---------g~~~~~------~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~  692 (818)
                               |.+.++      .+|...+.|++.+||.|++.+||+||+++-+.
T Consensus       250 ~~~~~~~~~g~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~~~  302 (312)
T 3aez_A          250 PESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDADH  302 (312)
T ss_dssp             TTSTTGGGTTCCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECTTS
T ss_pred             cchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCCCC
Confidence                     222222      24555678999999999999999999987554

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=99.78  E-value=1.8e-19  Score=196.76  Aligned_cols=140  Identities=16%  Similarity=0.166  Sum_probs=113.6

Q ss_pred             ccccccccchhhh---------hcccCCCcccccHHHHHHHHHHHhcC-----------------------------Cce
Q 003460          545 VVSLESYFKSEQV---------KDFKYDDFSSLDLSLLSKNISDIRNG-----------------------------RRT  586 (818)
Q Consensus       545 vis~Ddfy~~~~~---------~~~~~d~p~t~D~~ll~~~L~~L~~g-----------------------------~~v  586 (818)
                      +++||+||++...         ...+++.|++||..+|.+.+..|++|                             +.+
T Consensus       158 vi~mDgFh~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v  237 (359)
T 2ga8_A          158 IVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDI  237 (359)
T ss_dssp             EEEGGGGBCCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCCE
T ss_pred             EEecCcCCCCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCceE
Confidence            6899999988432         24578999999999999999999887                             578


Q ss_pred             ecccccccccccCCCcceeeecCCcEEEEEecccchH-----hhhhcCC-----EEEEEEcChhHHHHHHHhcCccccCc
Q 003460          587 KVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP-----EIRKSLD-----LWIAVVGGVHSHLISRVQRDKSRMGC  656 (818)
Q Consensus       587 ~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~-----~l~~~~D-----~~I~v~~~~d~rl~Rri~Rd~~~rg~  656 (818)
                      .+|.||+.++++.+. ...+..+.++||+||++++++     .+++++|     ++|||+++.+++++|++.|+.. +|.
T Consensus       238 ~~P~yD~~~~d~~~~-~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~-~Gl  315 (359)
T 2ga8_A          238 FVPGFNHALKDPTPD-QYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQ-SGL  315 (359)
T ss_dssp             EEEEEETTTTEEEEE-EEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHH-TTS
T ss_pred             eeccccCccCCCCCC-ceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhc-cCC
Confidence            999999999998753 233334469999999888863     4678899     9999999999999999999874 466


Q ss_pred             --ccch--hhHHHhhcchhhhhccccCCcccEEEe
Q 003460          657 --FMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIR  687 (818)
Q Consensus       657 --~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~  687 (818)
                        +.++  .++.....|+. +||+|++..||+|+.
T Consensus       316 ~~s~eea~~r~~~~d~pN~-~~I~~~~~~ad~i~~  349 (359)
T 2ga8_A          316 VTTIAEGREKFRSNDLLNG-RDIDNHLIKVDNIVH  349 (359)
T ss_dssp             CSSHHHHHHHHHHCTTTSS-HHHHHTBCCCTTEEE
T ss_pred             CCCHHHHHHHHHhcCchhh-HhHhhcCCCCCEEEE
Confidence              5444  35556778877 899999999999874

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.78  E-value=1.5e-18  Score=188.35  Aligned_cols=194  Identities=15%  Similarity=0.195  Sum_probs=146.7

Q ss_pred             cCCcccccch---hhHHHHHHHHHHH----------------HhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-------
Q 003460           34 SLPVHASFDH---GYYLLVKSIQELR----------------EKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-------   87 (818)
Q Consensus        34 ~~~~~~s~~~---~~~~l~~~i~~~~----------------~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg-------   87 (818)
                      ..+..+++++   .|..+++.+....                ....++.+|||+|++|||||||++.|+..++       
T Consensus        33 ~~~~~i~~~~v~~~y~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~  112 (308)
T 1sq5_A           33 GINEDLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR  112 (308)
T ss_dssp             HHCTTCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred             CCccccchHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence            3445566665   6666666665433                1225678999999999999999999999876       


Q ss_pred             CeEEeccceecc--------c-ccCCCCCcccHHHHHHHHHhhhcCCc-cccccchhhhhccccccccccCCccEEEEEe
Q 003460           88 CTLISMENYRVG--------V-DEGNDLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSKVIKGASSGVVIVDG  157 (818)
Q Consensus        88 ~~vI~~D~~~~~--------~-~~~~~~~~~d~~~l~~~L~~l~~~~~-i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG  157 (818)
                      +.+|++|+++..        + ...+.+.+++...+...+..+..+.. +.+|.|++..+.+............+||+||
T Consensus       113 i~vi~~d~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG  192 (308)
T 1sq5_A          113 VELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEG  192 (308)
T ss_dssp             EEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEEC
T ss_pred             EEEEecCCccCcHHHHHhCCEeecCCCCCCccHHHHHHHHHHHhCCCCceecccccccccCcccccceecCCCCEEEECc
Confidence            678999998642        1 12344577888888888888888887 8999999999887654333334467999999


Q ss_pred             cccchh-----------hhhcCCCEEEEEEcCHHHHHHHHHHhccC-----C-----------CcCHHHHHHh-------
Q 003460          158 TYALDA-----------RLRSLLDIRVAVVGGVHFSLISKVQYDIG-----D-----------SCSLDSLIDS-------  203 (818)
Q Consensus       158 ~~l~~~-----------~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~-----~-----------~~s~e~~~~~-------  203 (818)
                      +++++.           .+.+++|.+|||++|.+.+++|++.|+..     .           ..+.+++.+.       
T Consensus       193 ~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~  272 (308)
T 1sq5_A          193 LNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKE  272 (308)
T ss_dssp             TTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHH
T ss_pred             hhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHh
Confidence            999985           68889999999999999999999998731     0           2344544332       


Q ss_pred             -hchhhhhccCCccccCcEEEECCC
Q 003460          204 -IFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       204 -~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                       ..|++.+||+|.+++||+||+|+.
T Consensus       273 ~~~~~~~~~i~~~~~~AD~vI~n~~  297 (308)
T 1sq5_A          273 INWLNLKQNILPTRERASLILTKSA  297 (308)
T ss_dssp             THHHHHHHTTGGGGGGCSEEEEECG
T ss_pred             ccHHHHHHHcccccccCcEEEEeCC
Confidence             246788999999999999999984

>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2

Probab=99.77  E-value=4e-19  Score=179.37  Aligned_cols=131  Identities=15%  Similarity=0.170  Sum_probs=112.3

Q ss_pred             ccccccccceeeccCCCCCcchhhhccCCeeeEeeeC--CEEEEEEcceeecCCCcccCceeEEEEec----cHHHHHHh
Q 003460          253 FQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSG--IRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGLLD  326 (818)
Q Consensus       253 ~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~--~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~~L~~  326 (818)
                      +.....|.|+|||+|+++++.++.++     |||..+  +...+|+|||+.++         +.|+.|    .+.++|..
T Consensus        37 ~~~~~~q~d~YfDtp~~~L~~~~~aL-----RiR~~~~~~~~~~t~Kgp~~~~---------~~e~~v~d~~~~~~~L~~  102 (189)
T 2aca_A           37 MFENNQESDWFYDTPQRTLTQQGKSL-----VLREIQPAGIKLWIVKGPEADR---------CEATNITKLDSAQSMLEN  102 (189)
T ss_dssp             EEEEEEEEEEEEECTTCHHHHTTCEE-----EEEEEETTTEEEEEEECSSTTB---------EEEEEBSCHHHHHHHHHH
T ss_pred             cCcceEEEEEEEeCCCcchhhCCeEE-----EEEEecCCCcEEEEEcCCCcCc---------eEEEecCCHHHHHHHHHH
Confidence            44566799999999999999999998     999763  36899999987532         235666    88999999


Q ss_pred             cCCceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec--C-------HHHHHHHHHHcCCCCCc-cchhHHHHHHh
Q 003460          327 LGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--N-------RKTVGAEALRMGINGPW-ITKSYLEMVLE  396 (818)
Q Consensus       327 LGf~~~~~~~K~R~~~~~~~~~i~lD~v~~lg~~fvEiE~~--~-------~~~i~~~~~~Lgl~~~~-~~~sYlel~l~  396 (818)
                      |||.++++++|.|++|.+++++|+||+++++|. |+|||..  +       .+.+.+++++|||..+. +++||++|+++
T Consensus       103 lgl~~~~~~~k~R~~~~~~~~~v~lD~~~~lg~-f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~~ll~~  181 (189)
T 2aca_A          103 MGYEVIQCSKKIRSIFFVGEFHITLDFLDGFGH-FAEFAIMTDDETALARYRERLVALAQQFHLSEADREHRSYKEILSA  181 (189)
T ss_dssp             TTCEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEEESCSGGGTTHHHHHHHHHHHTTCCGGGBCCSCTTTSSCC
T ss_pred             cCCcEEEEEEEEEEEEEECCEEEEEEcccCCee-EEEEEEEcCCccchHHHHHHHHHHHHHcCcCccccchhhHHHHHHh
Confidence            999999999999999999999999999999998 9999976  2       37889999999999865 89999999876


Q ss_pred             hc
Q 003460          397 KK  398 (818)
Q Consensus       397 ~~  398 (818)
                      ..
T Consensus       182 ~~  183 (189)
T 2aca_A          182 LE  183 (189)
T ss_dssp             --
T ss_pred             hh
Confidence            44

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=99.76  E-value=8.9e-19  Score=188.52  Aligned_cols=167  Identities=12%  Similarity=0.207  Sum_probs=125.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceecc-cc---------------cCCC--CCcccHHHHHHH
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVG-VD---------------EGND--LDSIDFDALVQN  117 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~-~~---------------~~~~--~~~~d~~~l~~~  117 (818)
                      ++++|||+|++||||||+|+.|++.+|     +.+|++|+||+. ..               ..+.  ++++|.+.+.+.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~~   83 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERV   83 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHHH
Confidence            467899999999999999999999887     799999999862 21               1223  678888888888


Q ss_pred             HHhhhcCCccccccchh-----hhhccccccc---ccc-CCccEEEEEecccc----hhhhhcCCCEEEEEEcCHHHHHH
Q 003460          118 LQDLTEGKDTLIPMFDY-----QQKNRIGSKV---IKG-ASSGVVIVDGTYAL----DARLRSLLDIRVAVVGGVHFSLI  184 (818)
Q Consensus       118 L~~l~~~~~i~~p~~d~-----~~~~~~~~~~---~~~-~~~~vVIvEG~~l~----~~~l~~~~D~~I~Vda~~e~~l~  184 (818)
                      +..+..++.+..|.|++     ..+.+.....   ... ....++|+||.+++    +..+.+.+|++|||+++.+++++
T Consensus        84 l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl~  163 (290)
T 1a7j_A           84 FREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWI  163 (290)
T ss_dssp             HHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHHH
T ss_pred             HHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHHH
Confidence            88888888888888854     2222221111   111 34679999999997    45778899999999999999999


Q ss_pred             HHHHhccCCC----cCHHHHHHhhchhhhhccCCccccCcE------EEECCC
Q 003460          185 SKVQYDIGDS----CSLDSLIDSIFPLFRKHIEPDLHHAQI------RINNRF  227 (818)
Q Consensus       185 Rri~Rd~~~~----~s~e~~~~~~~p~~~~~Iep~~~~ADi------II~N~~  227 (818)
                      |++.||...+    ....+.+..++|.+.+|++|.+++||+      +|+|+.
T Consensus       164 Rrl~Rd~~~RG~s~e~v~~~i~~r~~~~~r~i~p~~~~AD~~~~~~~vIDns~  216 (290)
T 1a7j_A          164 QKIHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQFSQTDINFQRVPVVDTSN  216 (290)
T ss_dssp             HHHHHTSSSCCSCCCCHHHHHHHHHHHHHHHTGGGGGTCSEEEEEEESSCCSC
T ss_pred             HHhhhhhhhcCCChHHHHHHHHHhCccHHHhhhhhhccCCEeeccCceecCCC
Confidence            9999996554    233333334489999999999999999      788873

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.76  E-value=5.1e-18  Score=172.98  Aligned_cols=175  Identities=26%  Similarity=0.436  Sum_probs=145.4

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhC--Ccccccccccchh------hhhcccCCCcccccHHHHHHHHHHHhcCCce
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLESYFKSE------QVKDFKYDDFSSLDLSLLSKNISDIRNGRRT  586 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg--~~vis~Ddfy~~~------~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v  586 (818)
                      .++.+|||+||+||||||+++.|+..++  +.++++|.+|...      +...+.++.|+++|.+.+.+.+..+..++.+
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   83 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPV   83 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCCCc
Confidence            4678999999999999999999999988  8899999998741      2233456778889999999999999988889


Q ss_pred             ecccccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch--hhH
Q 003460          587 KVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDI  663 (818)
Q Consensus       587 ~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~--~~~  663 (818)
                      ..|.++++.+.+..  ........+++++||.+++. +.+...+|.+||+|++.+.++.|++.|+...+|.+...  +++
T Consensus        84 ~~~~~~~s~g~~~~--~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~  161 (211)
T 3asz_A           84 EMPVYDFRAYTRSP--RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY  161 (211)
T ss_dssp             EECCEETTTTEECS--SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             CCCcccCcccCCCC--CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            99999999887653  22223456899999999986 66888999999999999999999999987777776553  456


Q ss_pred             HHhhcchhhhhccccCCcccEEEeCCCC
Q 003460          664 MMTVFPMFQQHIEPHLVHAHLKIRNDFD  691 (818)
Q Consensus       664 ~~~v~p~~~~~I~p~~~~ADivI~n~~~  691 (818)
                      ...+.|.|.+|++|.+..||+||+|+-+
T Consensus       162 ~~~~~~~~~~~~~~~~~~aD~ii~~~~~  189 (211)
T 3asz_A          162 LEQVKPMHLHFVEPTKRYADVIVPRGGQ  189 (211)
T ss_dssp             HHTHHHHHHHTTGGGGGGCSEEEESTTS
T ss_pred             HHhhhhhHHHhcccchhcCeEEEeCCCc
Confidence            6678899999999999999999998743

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.75  E-value=4e-18  Score=174.07  Aligned_cols=171  Identities=19%  Similarity=0.213  Sum_probs=135.6

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccchhhhh----cc-cCCCcccccHHHHHHHHHHHhcC
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQVK----DF-KYDDFSSLDLSLLSKNISDIRNG  583 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~~~~~----~~-~~d~p~t~D~~ll~~~L~~L~~g  583 (818)
                      .++..+|||.||+|||||||++.|+..+.     ..++++|+|+......    .+ ..+.|.++|...+.+.+..+..|
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~   98 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQ   98 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHHHC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHhcC
Confidence            45678999999999999999999999875     5789999998763221    11 24578899999999999999999


Q ss_pred             CceecccccccccccCCCcceeeecCC-cEEEEEecccch-----HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcc
Q 003460          584 RRTKVPIFDLETGARSGFKELEVSEDC-GVIIFEGVYALH-----PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCF  657 (818)
Q Consensus       584 ~~v~~P~yD~~~~~r~~~~~~~~~~~~-~vvIvEG~~~~~-----~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~  657 (818)
                      +.+..|.||+..+.+.+  ........ +++|+||++++.     ..+.+.+|.+||++++.+.++.|++.|+ .++|.+
T Consensus        99 ~~i~~p~~d~~~~~~~g--~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~-~~~g~t  175 (208)
T 3c8u_A           99 ERVIYPLFDRARDIAIA--GAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRW-LDHGLN  175 (208)
T ss_dssp             SCEEEEEEETTTTEEEE--EEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHH-HHTTCC
T ss_pred             CceecccCCccccCCCC--CceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHH-HhcCCC
Confidence            99999999999887654  22233343 899999999854     2567889999999999999999999996 345766


Q ss_pred             cch--hhHHHhhcchhhhhccccCCcccEEEeC
Q 003460          658 MSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRN  688 (818)
Q Consensus       658 ~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n  688 (818)
                      .+.  ..+.....|++ +|++|.+..||+||+.
T Consensus       176 ~~~~~~~~~~~~~~~~-~~i~~~~~~aD~vi~~  207 (208)
T 3c8u_A          176 HDAAVARAQGNDLANA-RAIEAARLPADLTWPQ  207 (208)
T ss_dssp             HHHHHHHHHTHHHHHH-HHHHTTBCCCSEEEC-
T ss_pred             HHHHHHHHHhccHHHH-HHHHhCCCCCCEEeeC
Confidence            554  23433467766 7999999999999974

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.74  E-value=6.4e-18  Score=177.85  Aligned_cols=164  Identities=23%  Similarity=0.454  Sum_probs=130.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCe----------EEeccceecccc------------cCCCCCcccHHHHHHH
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCT----------LISMENYRVGVD------------EGNDLDSIDFDALVQN  117 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~----------vI~~D~~~~~~~------------~~~~~~~~d~~~l~~~  117 (818)
                      .++++|||+|++||||||+|+.|++.+|+.          ++++|+||+.+.            ..+.++++|.+.+.+.
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~~   99 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKT   99 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHHH
Confidence            467899999999999999999999999976          899999987322            2235788999999999


Q ss_pred             HHhhhcCCccccccchhhhhccccccccccCCccEEEEEecccc-hhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC-c
Q 003460          118 LQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-C  195 (818)
Q Consensus       118 L~~l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~-~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~  195 (818)
                      |..+..+..+..|.|++..+.++.. ........+||+||++++ .+.+.+.+|.+|||+++.+++++|+..|+...+ .
T Consensus       100 L~~l~~~~~v~~~~~d~~~~~~~~~-~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~rg~  178 (252)
T 1uj2_A          100 LKEITEGKTVQIPVYDFVSHSRKEE-TVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGR  178 (252)
T ss_dssp             HHHHHTTCCEEEEEEETTTTEEEEE-EEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHcCCeeecCccccccccCCCc-eeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhhhCC
Confidence            9999888888889999988876632 222334679999999987 577888899999999999999999999873222 3


Q ss_pred             CHHHHHHh----hchhhhhccCCccccCcEEEE
Q 003460          196 SLDSLIDS----IFPLFRKHIEPDLHHAQIRIN  224 (818)
Q Consensus       196 s~e~~~~~----~~p~~~~~Iep~~~~ADiII~  224 (818)
                      +.+.+.++    ..+.+.++++|.+..||++|+
T Consensus       179 ~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~  211 (252)
T 1uj2_A          179 DLEQILSQYITFVKPAFEEFCLPTKKYADVIIP  211 (252)
T ss_dssp             CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEE
T ss_pred             CHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEe
Confidence            55554443    345678888899999999994

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.72  E-value=6.1e-17  Score=175.87  Aligned_cols=199  Identities=16%  Similarity=0.157  Sum_probs=151.6

Q ss_pred             ccccCCcccccch---hhHHHHHHHHHHHH--------------------hcCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           31 ILQSLPVHASFDH---GYYLLVKSIQELRE--------------------KKGGIVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        31 ~~~~~~~~~s~~~---~~~~l~~~i~~~~~--------------------~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      .+.+++..+++++   .|.++.+.+.....                    ..+...+|||.|++|||||||++.|+..+.
T Consensus        36 ~l~~~~~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           36 GLRGLGEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             TTCCTTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             hccCCCCeEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence            3556677788877   78777776654310                    145678999999999999999999998762


Q ss_pred             -------CeEEeccceeccc--------c-cCCCCCcccHHHHHHHHHhhhcCCc-cccccchhhhhccccccccccCCc
Q 003460           88 -------CTLISMENYRVGV--------D-EGNDLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSKVIKGASS  150 (818)
Q Consensus        88 -------~~vI~~D~~~~~~--------~-~~~~~~~~d~~~l~~~L~~l~~~~~-i~~p~~d~~~~~~~~~~~~~~~~~  150 (818)
                             +.++++|+++...        . ..+.++++|.+.+.+.|..+..+.. ...|.|++..+.++..........
T Consensus       116 ~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p  195 (312)
T 3aez_A          116 RWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHP  195 (312)
T ss_dssp             TSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSC
T ss_pred             ccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCC
Confidence                   5689999986421        1 1345678888888888888875544 677899999999886544445567


Q ss_pred             cEEEEEecccch----hhhhcCCCEEEEEEcCHHHHHHHHHHhccC-----C-----------CcCHHHHHHh-------
Q 003460          151 GVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSLISKVQYDIG-----D-----------SCSLDSLIDS-------  203 (818)
Q Consensus       151 ~vVIvEG~~l~~----~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~-----~-----------~~s~e~~~~~-------  203 (818)
                      +++|+||++++.    ..+.+.+|++|||+++.+.+..|++.|...     .           ..+.+++.+.       
T Consensus       196 ~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r~~~~~~~~~~g~s~e~a~~~v~~~~~~  275 (312)
T 3aez_A          196 DILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFADPESHFHHYAAFSDSQAVVAAREIWRT  275 (312)
T ss_dssp             SEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGGSTTSTTGGGTTCCHHHHHHHHHHHHHH
T ss_pred             CEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhccccCcchhhhcccCCCHHHHHHHHHHHHHh
Confidence            899999999986    578899999999999999999999888431     1           2344444422       


Q ss_pred             -hchhhhhccCCccccCcEEEECCCCC
Q 003460          204 -IFPLFRKHIEPDLHHAQIRINNRFVS  229 (818)
Q Consensus       204 -~~p~~~~~Iep~~~~ADiII~N~~~~  229 (818)
                       ..|++++||+|++.+||+||+|+...
T Consensus       276 ~~~p~~~~~i~p~~~~ADlii~~~~~~  302 (312)
T 3aez_A          276 INRPNLVENILPTRPRATLVLRKDADH  302 (312)
T ss_dssp             THHHHHHHTTGGGGGGCSEEEEECTTS
T ss_pred             ccHHHHHHhccCCCCCCeEEEecCCCC
Confidence             36889999999999999999988543

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=99.71  E-value=9.1e-18  Score=170.61  Aligned_cols=168  Identities=17%  Similarity=0.258  Sum_probs=115.5

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccccchhhh-hcccCC-----CcccccHHHHHHHH-HHHh
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFKSEQV-KDFKYD-----DFSSLDLSLLSKNI-SDIR  581 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddfy~~~~~-~~~~~d-----~p~t~D~~ll~~~L-~~L~  581 (818)
                      ...+.+|||+|++||||||+++.|+..+   +  +.++++|.++++... ...+..     .++++|.+.|.+.+ ..+.
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~   98 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLK   98 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTT
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHh
Confidence            4567999999999999999999999876   4  345678999886321 111111     14789999998765 7788


Q ss_pred             cCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccchh
Q 003460          582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQN  661 (818)
Q Consensus       582 ~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~  661 (818)
                      .|+.+.+|.|++..+.+..  ......+.++||+||++++.+.+.+.+|..|||++|.++++.|++.|+     .. ...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~~~~R~~~R~-----~~-~~~  170 (201)
T 1rz3_A           99 ASHQLTLPFYDHETDTHSK--RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQV-----KQ-NIQ  170 (201)
T ss_dssp             TCSEEEEEEEETTTTEEEE--EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC--------------------CHH
T ss_pred             cCCccccCceeccCCCCCC--ceEEeCCCcEEEEechhhccHHHHhhcCEEEEEeCCHHHHHHHHhcCC-----HH-HHH
Confidence            8889999999998543321  122234578999999999988888999999999999999999999998     11 112


Q ss_pred             hHHHhhcchhhhhcccc--CCcccEEEeCC
Q 003460          662 DIMMTVFPMFQQHIEPH--LVHAHLKIRND  689 (818)
Q Consensus       662 ~~~~~v~p~~~~~I~p~--~~~ADivI~n~  689 (818)
                      .+...+.|.+..|+.+.  +..||+||+|+
T Consensus       171 ~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~  200 (201)
T 1rz3_A          171 KFINRYWKAEDYYLETEEPIKRADVVFDMT  200 (201)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred             HHHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence            34456788899998766  58999999985

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=99.70  E-value=2e-17  Score=168.17  Aligned_cols=164  Identities=18%  Similarity=0.321  Sum_probs=111.5

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceecccc---cCCC-------CCcccHHHHHHHH-Hhhh
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVD---EGND-------LDSIDFDALVQNL-QDLT  122 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~---~~~~-------~~~~d~~~l~~~L-~~l~  122 (818)
                      ...+.+|||+|++||||||+++.|+..+   |  +.++++|.++....   ..+.       ++++|.+.+.+.+ ..+.
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~   98 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLK   98 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTT
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHh
Confidence            3567899999999999999999999876   4  34567898876421   1111       2568888887765 5566


Q ss_pred             cCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHH
Q 003460          123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID  202 (818)
Q Consensus       123 ~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~  202 (818)
                      .+..+.+|.|++..+.... .........+||+||++++++.+.+.+|.+|||++|.++++.|.+.|+   ......+.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~~~~R~~~R~---~~~~~~~~~  174 (201)
T 1rz3_A           99 ASHQLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQV---KQNIQKFIN  174 (201)
T ss_dssp             TCSEEEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC-----------------CHHHHHH
T ss_pred             cCCccccCceeccCCCCCC-ceEEeCCCcEEEEechhhccHHHHhhcCEEEEEeCCHHHHHHHHhcCC---HHHHHHHHh
Confidence            7777888888887543322 222334567999999999988888999999999999999999999998   233444557


Q ss_pred             hhchhhhhccCCc--cccCcEEEECC
Q 003460          203 SIFPLFRKHIEPD--LHHAQIRINNR  226 (818)
Q Consensus       203 ~~~p~~~~~Iep~--~~~ADiII~N~  226 (818)
                      .+.|.++.|+++.  +.+||+||+|+
T Consensus       175 ~~~~~~~~y~~~~~~~~~AD~vI~N~  200 (201)
T 1rz3_A          175 RYWKAEDYYLETEEPIKRADVVFDMT  200 (201)
T ss_dssp             HHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred             heeHHHHHHhCCCCcHhhCcEEecCC
Confidence            7889888887655  78999999997

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.70  E-value=1.3e-16  Score=167.01  Aligned_cols=172  Identities=27%  Similarity=0.459  Sum_probs=138.0

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCc----------ccccccccch---hh-----hhcccCCCcccccHHHHHHH
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCE----------VVSLESYFKS---EQ-----VKDFKYDDFSSLDLSLLSKN  576 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~----------vis~Ddfy~~---~~-----~~~~~~d~p~t~D~~ll~~~  576 (818)
                      ..+.+|||+||+||||||+++.|+..+|..          ++++|+||..   .+     ...+.+++|.++|.+.+.+.
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRT  102 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCcccccHHHHHHH
Confidence            467899999999999999999999988854          6889988863   11     12345677888999999999


Q ss_pred             HHHHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccc-hHhhhhcCCEEEEEEcChhHHHHHHHhcCccccC
Q 003460          577 ISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMG  655 (818)
Q Consensus       577 L~~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~-~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg  655 (818)
                      |..+..+.....+.|+...+.|...  .....+.+++|+||+.++ .+.+.+.+|.+|+++++.+.++.|++.|+. .+|
T Consensus       103 L~~l~~~~~~~~~~ls~g~~~r~~~--~~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v~th~~~~~~r~~~r~~-~~G  179 (245)
T 2jeo_A          103 LKNIVEGKTVEVPTYDFVTHSRLPE--TTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDV-RRG  179 (245)
T ss_dssp             HHHHHTTCCEEECCEETTTTEECSS--CEEECCCSEEEEECTTTTTSHHHHTTCSEEEEEECCHHHHHHHHHHHHT-C--
T ss_pred             HHHHHCCCCeecccccccccCccCc--eEEecCCCEEEEeCccccccHHHHHhcCeEEEEECCHHHHHHHHHHHHH-HcC
Confidence            9988888888888898888777643  233445689999999987 478888899999999999999999999987 667


Q ss_pred             cccch--hhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460          656 CFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRND  689 (818)
Q Consensus       656 ~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n~  689 (818)
                      .+.+.  .+|....++.+++|++|.+..||+||++.
T Consensus       180 ~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~  215 (245)
T 2jeo_A          180 RDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRG  215 (245)
T ss_dssp             -CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESS
T ss_pred             CCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcCC
Confidence            76654  45666678899999999999999999654

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.69  E-value=8.7e-17  Score=164.16  Aligned_cols=166  Identities=19%  Similarity=0.310  Sum_probs=130.8

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceeccc---------ccCCCCCcccHHHHHHHHHhhhcC
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGV---------DEGNDLDSIDFDALVQNLQDLTEG  124 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~---------~~~~~~~~~d~~~l~~~L~~l~~~  124 (818)
                      .++..+|||.|++|||||||++.|+..+.     +.+|++|+++...         ...+.+.+++...+.+.+..+..+
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~   98 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQ   98 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHHHC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHhcC
Confidence            45678999999999999999999999885     6789999986421         123456788888888888888888


Q ss_pred             CccccccchhhhhccccccccccCCccEEEEEecccch-----hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHH
Q 003460          125 KDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-----ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDS  199 (818)
Q Consensus       125 ~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-----~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~  199 (818)
                      +.+..|.+++..+...+.........+++|+||.+++.     ..+.+.+|.+|||+++.+.+++|.+.|+.....+.++
T Consensus        99 ~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~~~~g~t~~~  178 (208)
T 3c8u_A           99 ERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRWLDHGLNHDA  178 (208)
T ss_dssp             SCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHHHHTTCCHHH
T ss_pred             CceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHHHhcCCCHHH
Confidence            88999999998887655433333334799999999854     2557889999999999999999999997544456665


Q ss_pred             HHHh----hchhhhhccCCccccCcEEEEC
Q 003460          200 LIDS----IFPLFRKHIEPDLHHAQIRINN  225 (818)
Q Consensus       200 ~~~~----~~p~~~~~Iep~~~~ADiII~N  225 (818)
                      +..+    +.|++ ++++|.+.+||+||+.
T Consensus       179 ~~~~~~~~~~~~~-~~i~~~~~~aD~vi~~  207 (208)
T 3c8u_A          179 AVARAQGNDLANA-RAIEAARLPADLTWPQ  207 (208)
T ss_dssp             HHHHHHTHHHHHH-HHHHTTBCCCSEEEC-
T ss_pred             HHHHHHhccHHHH-HHHHhCCCCCCEEeeC
Confidence            5543    56766 7899999999999964

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=99.69  E-value=4.6e-17  Score=177.84  Aligned_cols=135  Identities=12%  Similarity=0.177  Sum_probs=110.2

Q ss_pred             eEEeccceecc-------------cccCCCCCcccHHHHHHHHHhhhcC-----------------------------Cc
Q 003460           89 TLISMENYRVG-------------VDEGNDLDSIDFDALVQNLQDLTEG-----------------------------KD  126 (818)
Q Consensus        89 ~vI~~D~~~~~-------------~~~~~~~~~~d~~~l~~~L~~l~~~-----------------------------~~  126 (818)
                      .+|++|+||..             ...++.|++||...+.+.+..|+.+                             ..
T Consensus       157 ~vi~mDgFh~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  236 (359)
T 2ga8_A          157 QIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPD  236 (359)
T ss_dssp             EEEEGGGGBCCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCC
T ss_pred             EEEecCcCCCCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCce
Confidence            36899999862             2245789999999999998888766                             56


Q ss_pred             cccccchhhhhccccccccccCCccEEEEEecccchh-----hhhcCCC-----EEEEEEcCHHHHHHHHHHhccCCCc-
Q 003460          127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDA-----RLRSLLD-----IRVAVVGGVHFSLISKVQYDIGDSC-  195 (818)
Q Consensus       127 i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~-----~l~~~~D-----~~I~Vda~~e~~l~Rri~Rd~~~~~-  195 (818)
                      +.+|.||+..++++.......+..++||+||++++.+     .+++++|     ++|||+++.+++++|++.|+..... 
T Consensus       237 v~~P~yD~~~~d~~~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~~Gl~  316 (359)
T 2ga8_A          237 IFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLV  316 (359)
T ss_dssp             EEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHHTTSC
T ss_pred             EeeccccCccCCCCCCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhccCCC
Confidence            8899999999999877666666678999999877763     4667898     9999999999999999999865444 


Q ss_pred             -CHHHHHHhh----chhhhhccCCccccCcEEEE
Q 003460          196 -SLDSLIDSI----FPLFRKHIEPDLHHAQIRIN  224 (818)
Q Consensus       196 -s~e~~~~~~----~p~~~~~Iep~~~~ADiII~  224 (818)
                       +.+++.+++    .|+. ++|+|++.+||+|+.
T Consensus       317 ~s~eea~~r~~~~d~pN~-~~I~~~~~~ad~i~~  349 (359)
T 2ga8_A          317 TTIAEGREKFRSNDLLNG-RDIDNHLIKVDNIVH  349 (359)
T ss_dssp             SSHHHHHHHHHHCTTTSS-HHHHHTBCCCTTEEE
T ss_pred             CCHHHHHHHHHhcCchhh-HhHhhcCCCCCEEEE
Confidence             777766653    7766 799999999999885

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.66  E-value=9e-17  Score=164.17  Aligned_cols=157  Identities=17%  Similarity=0.139  Sum_probs=118.2

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-----------------CCCcccHHHHHHHHHh-
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQD-  120 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~~~d~~~l~~~L~~-  120 (818)
                      +..+.-|||+|++||||||+++.|++ +|+++|++|.+.+.+...+                 ..+.+|...|.+.+.. 
T Consensus         6 ~~~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d   84 (210)
T 4i1u_A            6 HHHMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSD   84 (210)
T ss_dssp             CCSCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHC
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCC
Confidence            45688999999999999999999998 9999999999755332211                 2256888887776552 


Q ss_pred             ---hhcCCccccccchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcC
Q 003460          121 ---LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCS  196 (818)
Q Consensus       121 ---l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s  196 (818)
                         +...+.+.+|.+..........     ....++++|.+++++ ..+...+|.+|+|++|.+++++|.+.|+......
T Consensus        85 ~~~~~~L~~i~HP~I~~~~~~~~~~-----~~~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rdg~s~ee  159 (210)
T 4i1u_A           85 EDARRRLEAITHPLIRAETEREARD-----AQGPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRNGFTREQ  159 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT-----CCSSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHh-----cCCCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhcCCCCHHH
Confidence               2223456666665554444321     234579999999999 8999999999999999999999999998543344


Q ss_pred             HHHHHHhhchhhhhccCCccccCcEEEECC
Q 003460          197 LDSLIDSIFPLFRKHIEPDLHHAQIRINNR  226 (818)
Q Consensus       197 ~e~~~~~~~p~~~~~Iep~~~~ADiII~N~  226 (818)
                      ....++.++|..++     +..||+||+|+
T Consensus       160 a~~ri~~Q~~~eek-----~~~AD~VIdN~  184 (210)
T 4i1u_A          160 VEAIIARQATREAR-----LAAADDVIVND  184 (210)
T ss_dssp             HHHHHHHSCCHHHH-----HHTCSEEEECS
T ss_pred             HHHHHHHcCChHHH-----HHhCCEEEECC
Confidence            44555567777665     68999999998

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.65  E-value=4.2e-16  Score=167.59  Aligned_cols=183  Identities=16%  Similarity=0.216  Sum_probs=127.5

Q ss_pred             hhhHHHHHHHHHHHH-hcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-------CeEE-eccceeccc-------------
Q 003460           43 HGYYLLVKSIQELRE-KKGGIVTVGIGGPSGSGKTSLAEKLASVIG-------CTLI-SMENYRVGV-------------  100 (818)
Q Consensus        43 ~~~~~l~~~i~~~~~-~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg-------~~vI-~~D~~~~~~-------------  100 (818)
                      .....+++.+..+.. ..+++.+|||+|++||||||+++.|+..++       +.++ ++|+||...             
T Consensus        11 ~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~   90 (290)
T 1odf_A           11 YTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNN   90 (290)
T ss_dssp             HHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhcccccc
Confidence            344446666665433 446689999999999999999999998874       4556 999997632             


Q ss_pred             ---ccCCCCCcccHHHHHHHHHhhhcC------Cccccccchhhh----hccccc-cccccCCccEEEEEecccch-hh-
Q 003460          101 ---DEGNDLDSIDFDALVQNLQDLTEG------KDTLIPMFDYQQ----KNRIGS-KVIKGASSGVVIVDGTYALD-AR-  164 (818)
Q Consensus       101 ---~~~~~~~~~d~~~l~~~L~~l~~~------~~i~~p~~d~~~----~~~~~~-~~~~~~~~~vVIvEG~~l~~-~~-  164 (818)
                         ..++.|+++|.+.+.+.|..+..|      ..+.+|.|++..    ++++.. ..... +.+++|+||++++. +. 
T Consensus        91 ~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~  169 (290)
T 1odf_A           91 KLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPIL  169 (290)
T ss_dssp             GGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCC
T ss_pred             chhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccc
Confidence               113458999999999999999888      567889999887    776542 12223 57899999998743 32 


Q ss_pred             --------------------------hhcCCCEE---EEEEcCHHHHHHH-HHHh--c----cCCCcCHH---HHHHhhc
Q 003460          165 --------------------------LRSLLDIR---VAVVGGVHFSLIS-KVQY--D----IGDSCSLD---SLIDSIF  205 (818)
Q Consensus       165 --------------------------l~~~~D~~---I~Vda~~e~~l~R-ri~R--d----~~~~~s~e---~~~~~~~  205 (818)
                                                +++.+|+.   |||+++.+.++.| |+.|  +    .....+.+   ++.++++
T Consensus       170 ~~~~~~~~~~~~l~~~n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v~~~~~~~~  249 (290)
T 1odf_A          170 QGIENNDLLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDRYM  249 (290)
T ss_dssp             SCTTTCSSSCTTHHHHHHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHHHHHHTTH
T ss_pred             hhhhhcccchhhHHHHHHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhc
Confidence                                      34445555   9999976666665 7777  3    11123444   4455667


Q ss_pred             hhhhhccC-------CccccCcEEEECCC
Q 003460          206 PLFRKHIE-------PDLHHAQIRINNRF  227 (818)
Q Consensus       206 p~~~~~Ie-------p~~~~ADiII~N~~  227 (818)
                      |.|+.|++       |.+ +||+|+..+.
T Consensus       250 p~y~~~~~~~~~~~~~~~-~adlvl~~~~  277 (290)
T 1odf_A          250 PSYKLYLNDFVRSESLGS-IATLTLGIDS  277 (290)
T ss_dssp             HHHHHHHHHHHHHTCSSS-SEEEEEEECT
T ss_pred             chHHHHhHHHHHhccCCC-CCCEEEEECC
Confidence            87766664       444 8999997663

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.64  E-value=1.1e-15  Score=155.63  Aligned_cols=167  Identities=25%  Similarity=0.435  Sum_probs=129.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhC--CeEEeccceecccc----------cCCCCCcccHHHHHHHHHhhhcCCcc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIG--CTLISMENYRVGVD----------EGNDLDSIDFDALVQNLQDLTEGKDT  127 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg--~~vI~~D~~~~~~~----------~~~~~~~~d~~~l~~~L~~l~~~~~i  127 (818)
                      +++.+|||+|++|||||||++.|+..++  +.++++|.++....          ..+.+..++.+.+.+.+..+..++.+
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   83 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPV   83 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCCCc
Confidence            4567999999999999999999999988  99999999876321          12335667778888888877777777


Q ss_pred             ccccchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCC-CcCHH----HHH
Q 003460          128 LIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGD-SCSLD----SLI  201 (818)
Q Consensus       128 ~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~-~~s~e----~~~  201 (818)
                      ..|.++...+.+.... ......+++++||.+++. +.+..++|.+||||++.+.++.|++.|+... ..+..    .+.
T Consensus        84 ~~~~~~~s~g~~~~~~-~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~  162 (211)
T 3asz_A           84 EMPVYDFRAYTRSPRR-TPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL  162 (211)
T ss_dssp             EECCEETTTTEECSSC-EEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             CCCcccCcccCCCCCe-EEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            7788877776654321 112335699999999986 6778899999999999999999999987432 23333    334


Q ss_pred             HhhchhhhhccCCccccCcEEEECCC
Q 003460          202 DSIFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       202 ~~~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      .+..|.|.++++|.+.+||+||+|+.
T Consensus       163 ~~~~~~~~~~~~~~~~~aD~ii~~~~  188 (211)
T 3asz_A          163 EQVKPMHLHFVEPTKRYADVIVPRGG  188 (211)
T ss_dssp             HTHHHHHHHTTGGGGGGCSEEEESTT
T ss_pred             HhhhhhHHHhcccchhcCeEEEeCCC
Confidence            45678999999999999999999984

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.62  E-value=4.3e-15  Score=155.49  Aligned_cols=166  Identities=20%  Similarity=0.399  Sum_probs=128.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCe----------EEeccceecccc------------cCCCCCcccHHHHHHH
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCT----------LISMENYRVGVD------------EGNDLDSIDFDALVQN  117 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~----------vI~~D~~~~~~~------------~~~~~~~~d~~~l~~~  117 (818)
                      +.+.+|||+|++|||||||++.|+..+|..          ++++|.||+.+.            ..+.++.++.+.+.+.
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRT  102 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCcccccHHHHHHH
Confidence            456899999999999999999999988854          789998876321            1123456777778888


Q ss_pred             HHhhhcCCccccccchhhhhccccccccccCCccEEEEEecccc-hhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcC
Q 003460          118 LQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCS  196 (818)
Q Consensus       118 L~~l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~-~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s  196 (818)
                      |..+........+.++...+.++... ....+.+++|+||+.++ ...+.+++|.+|+|+++.+.++.|++.|+.....+
T Consensus       103 L~~l~~~~~~~~~~ls~g~~~r~~~~-~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v~th~~~~~~r~~~r~~~~G~~  181 (245)
T 2jeo_A          103 LKNIVEGKTVEVPTYDFVTHSRLPET-TVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVRRGRD  181 (245)
T ss_dssp             HHHHHTTCCEEECCEETTTTEECSSC-EEECCCSEEEEECTTTTTSHHHHTTCSEEEEEECCHHHHHHHHHHHHTC---C
T ss_pred             HHHHHCCCCeecccccccccCccCce-EEecCCCEEEEeCccccccHHHHHhcCeEEEEECCHHHHHHHHHHHHHHcCCC
Confidence            88777666777788888888776442 23344679999999887 47788889999999999999999999998743457


Q ss_pred             HHHHHHh----hchhhhhccCCccccCcEEEECC
Q 003460          197 LDSLIDS----IFPLFRKHIEPDLHHAQIRINNR  226 (818)
Q Consensus       197 ~e~~~~~----~~p~~~~~Iep~~~~ADiII~N~  226 (818)
                      .+++.++    ..+.++++++|.++.||+||++.
T Consensus       182 ~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~  215 (245)
T 2jeo_A          182 LEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRG  215 (245)
T ss_dssp             HHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESS
T ss_pred             HHHHHHHHHHhhhHhHHHhCCcchhcceEEEcCC
Confidence            7776654    35688899999999999999654

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.59  E-value=1.6e-15  Score=153.35  Aligned_cols=145  Identities=18%  Similarity=0.253  Sum_probs=105.3

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceeccccc--------------CCCCCcccHHHHHHHHHh----
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE--------------GNDLDSIDFDALVQNLQD----  120 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~--------------~~~~~~~d~~~l~~~L~~----  120 (818)
                      +....+|||+|++||||||+|+.|++.+|+++|++|++++....              .+ .+.+|...|.+.+..    
T Consensus         9 ~~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~~~~   87 (192)
T 2grj_A            9 HHHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLE-DGKVNRKKLAGIVFESREN   87 (192)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBS-SSSBCHHHHHHHHTTCHHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhChhhcC-CCCcCHHHHHHHHhCCHHH
Confidence            45578999999999999999999999889999999999663321              11 456777777664321    


Q ss_pred             hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHH
Q 003460          121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL  200 (818)
Q Consensus       121 l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~  200 (818)
                      +...+.+.+|.+......+...      ...++|+|++++++..+...+|.+|||++|.+++++|.+             
T Consensus        88 ~~~l~~i~hP~i~~~~~~~~~~------~~~~vv~d~pll~e~~~~~~~d~vi~v~a~~e~r~~Rli-------------  148 (192)
T 2grj_A           88 LKKLELLVHPLMKKRVQEIINK------TSGLIVIEAALLKRMGLDQLCDHVITVVASRETILKRNR-------------  148 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT------CCEEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHCS-------------
T ss_pred             HHHHHhhhCHHHHHHHHHHHHH------cCCEEEEEEeceeecChHHhCCEEEEEECCHHHHHHHHH-------------
Confidence            2223345566665554433221      135899999999998888899999999999999988871             


Q ss_pred             HHhhchhhhhccCCccccCcEEEECCC
Q 003460          201 IDSIFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       201 ~~~~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                       +.++|.   ++++.++.||+||+|+.
T Consensus       149 -~~q~~~---~~~~~~~~AD~vI~n~~  171 (192)
T 2grj_A          149 -EADRRL---KFQEDIVPQGIVVANNS  171 (192)
T ss_dssp             -SHHHHH---TTCTTCCCCSEEEECSS
T ss_pred             -HhcCCc---hhhhHHhcCCEEEECCC
Confidence             122344   34556789999999984

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.51  E-value=1.1e-14  Score=147.18  Aligned_cols=149  Identities=15%  Similarity=0.221  Sum_probs=110.1

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh----------hhcccCCCcccccHHHHHHHH----HH
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ----------VKDFKYDDFSSLDLSLLSKNI----SD  579 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~----------~~~~~~d~p~t~D~~ll~~~L----~~  579 (818)
                      .....+|||+|++||||||+|+.|++.+|+.++++|++++...          .+...++ ++++|...|.+.+    ..
T Consensus         9 ~~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~~~~   87 (192)
T 2grj_A            9 HHHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLE-DGKVNRKKLAGIVFESREN   87 (192)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBS-SSSBCHHHHHHHHTTCHHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhChhhcC-CCCcCHHHHHHHHhCCHHH
Confidence            3457899999999999999999999989999999999987621          1222234 7789998887743    22


Q ss_pred             HhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccc
Q 003460          580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS  659 (818)
Q Consensus       580 L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~  659 (818)
                      ++..+.+..|.++.....+..       ....++|+|+.+++...+...+|..|||++|.+++++|.+.           
T Consensus        88 ~~~l~~i~hP~i~~~~~~~~~-------~~~~~vv~d~pll~e~~~~~~~d~vi~v~a~~e~r~~Rli~-----------  149 (192)
T 2grj_A           88 LKKLELLVHPLMKKRVQEIIN-------KTSGLIVIEAALLKRMGLDQLCDHVITVVASRETILKRNRE-----------  149 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------TCCEEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHCSS-----------
T ss_pred             HHHHHhhhCHHHHHHHHHHHH-------HcCCEEEEEEeceeecChHHhCCEEEEEECCHHHHHHHHHH-----------
Confidence            344455778887766544321       01368999999988877888999999999999999999811           


Q ss_pred             hhhHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460          660 QNDIMMTVFPMFQQHIEPHLVHAHLKIRNDF  690 (818)
Q Consensus       660 ~~~~~~~v~p~~~~~I~p~~~~ADivI~n~~  690 (818)
                       .|+..        |+++.++.||++|+|+-
T Consensus       150 -~q~~~--------~~~~~~~~AD~vI~n~~  171 (192)
T 2grj_A          150 -ADRRL--------KFQEDIVPQGIVVANNS  171 (192)
T ss_dssp             -HHHHH--------TTCTTCCCCSEEEECSS
T ss_pred             -hcCCc--------hhhhHHhcCCEEEECCC
Confidence             12211        34566789999999873

>3bhd_A Thtpase, thiamine triphosphatase; hydrolase, structural genomics consortium, CYTH SGC; HET: MSE CIT; 1.50A {Homo sapiens} PDB: 2jmu_A

Probab=99.48  E-value=7.4e-14  Score=145.40  Aligned_cols=139  Identities=12%  Similarity=0.033  Sum_probs=110.4

Q ss_pred             cccccccccceeeccCCCCCcchhhhccCCeeeEeeeCCEEEEEEcceeecCCCcccCceeEEEEe--------------
Q 003460          252 AFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVG--------------  317 (818)
Q Consensus       252 ~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~--------------  317 (818)
                      .......|.|+|||+|+++++..+.++     |||..+ +  +|+|+|...+..-....+.|++..              
T Consensus        47 ~~~~~~~q~n~YfDTpd~~L~~~~~aL-----RiR~~~-~--~tlK~p~~~g~~~~~~ey~e~~~~~~~~~~~~~~~~~~  118 (234)
T 3bhd_A           47 TLEYRVTFRDTYYDTPELSLMQADHWL-----RRREDS-G--WELKCPGAAGVLGPHTEYKELTAEPTIVAQLCKVLRAD  118 (234)
T ss_dssp             EEEEEEEEEEEEEECTTCHHHHTTCEE-----EEETTT-E--EEEEEESSBTTBCTTSEEEEECSHHHHHHHHHHHHTC-
T ss_pred             CCCCcceEEEEEeeCCChHHHhCCcEE-----EEECCC-C--eEEecCCccCccCCcceeccccCccchhhhhhhhhcCC
Confidence            344566799999999999999999999     999765 3  899987644321000233344432              


Q ss_pred             c----cHHHHHHhcCCceeEEEEEEEEEEEe--------C-CEEEEEeccCCCCCCeEEEEec--C-------HHHHHHH
Q 003460          318 R----MTLGGLLDLGYSVVASYKRASTYVVY--------G-NLSVSFETIDTLDETFMVLRGT--N-------RKTVGAE  375 (818)
Q Consensus       318 v----~~~~~L~~LGf~~~~~~~K~R~~~~~--------~-~~~i~lD~v~~lg~~fvEiE~~--~-------~~~i~~~  375 (818)
                      +    .+..+|..+||.++++++|.|+.|.+        + +++|+||.++ +|.+|+|||..  +       .+.+.++
T Consensus       119 ~~~~~~~~~~L~~~~l~p~~~~~~~R~~~~l~~~~~~~~~~~~~v~LD~~~-~G~~~~ElElEl~~~~~~~~~~~~l~~l  197 (234)
T 3bhd_A          119 GLGAGDVAAVLGPLGLQEVASFVTKRSAWKLVLLGADEEEPQLRVDLDTAD-FGYAVGEVEALVHEEAEVPTALEKIHRL  197 (234)
T ss_dssp             --CCSSHHHHHHHHTCEEEEEEEEEEEEEEEEGGGGCSSSCEEEEEEEEET-TSCEEEEEEEEESSGGGHHHHHHHHHHH
T ss_pred             ccchhHHHHHHhcCCCEEEEEEEEEEEEEEEcccCCccCCCeEEEEEeccc-CCCEEEEEEEEeCCcccchHHHHHHHHH
Confidence            1    46677889999999999999999999        8 9999999999 99999999976  2       2578899


Q ss_pred             HHHcCCCCCccchhHHHHHHhhcC
Q 003460          376 ALRMGINGPWITKSYLEMVLEKKG  399 (818)
Q Consensus       376 ~~~Lgl~~~~~~~sYlel~l~~~~  399 (818)
                      |++|||+.+...++|++.+++.+.
T Consensus       198 a~~Lgl~~~~~~~~k~~~~l~~~~  221 (234)
T 3bhd_A          198 SSMLGVPAQETAPAKLIVYLQRFR  221 (234)
T ss_dssp             HHHHTCCTTCCCCCHHHHHHHHHC
T ss_pred             HHHcCCCccccchHHHHHHHHHhC
Confidence            999999988889999998887553

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.48  E-value=6.5e-14  Score=149.86  Aligned_cols=157  Identities=17%  Similarity=0.207  Sum_probs=103.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-----------------CCCcccHHHHHHHHHh--
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQD--  120 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~~~d~~~l~~~L~~--  120 (818)
                      +++++|+|+|++||||||+|+.|+ .+|+.+|++|++++.....+                 ..+.+|...+...+..  
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~  151 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNK  151 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCH
Confidence            567899999999999999999999 58999999999854321111                 1124555544332211  


Q ss_pred             --hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHH
Q 003460          121 --LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLD  198 (818)
Q Consensus       121 --l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e  198 (818)
                        +...+.+.+|.+..........  .......+||+||.+++...+...+|.+|||++|.+++++|...|+.   .+.+
T Consensus       152 ~~~~~l~~i~~P~i~~~~~~~~~~--~~~~~~~~vIveg~~l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~g---~s~e  226 (281)
T 2f6r_A          152 KQMKILTDIVWPVIAKLAREEMDV--AVAKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVERDG---LSEA  226 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--HHHTTCCEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHHC---CCHH
T ss_pred             HHHHHhhcccChHHHHHHHHHHHH--HhccCCCEEEEEechhhccchHHhCCEEEEEcCCHHHHHHHHHHcCC---CCHH
Confidence              1112234455554444433321  11223468999999988777778899999999999999999999973   3444


Q ss_pred             HHHHh---hchhhhhccCCccccCcEEEECCC
Q 003460          199 SLIDS---IFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       199 ~~~~~---~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      ++.++   +.+..+.     ...||++|+|+.
T Consensus       227 ~~~~ri~~q~~~~~~-----~~~AD~vIdn~~  253 (281)
T 2f6r_A          227 AAQSRLQSQMSGQQL-----VEQSNVVLSTLW  253 (281)
T ss_dssp             HHHHHHHTSCCHHHH-----HHTCSEEEECSS
T ss_pred             HHHHHHHHcCChHhh-----HhhCCEEEECCC
Confidence            44443   3333222     246999999984

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.43  E-value=5e-13  Score=135.75  Aligned_cols=159  Identities=14%  Similarity=0.200  Sum_probs=104.5

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHh-CCeEEeccceeccccc----------CCCCCcccHHHHHHHHHhhhcCCcc
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGVDE----------GNDLDSIDFDALVQNLQDLTEGKDT  127 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~L-g~~vI~~D~~~~~~~~----------~~~~~~~d~~~l~~~L~~l~~~~~i  127 (818)
                      .+.+.+|+|+|++||||||+++.|++.+ ++.++++|+++.....          .+.+++++...+.+.+..+..+  .
T Consensus        18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~--~   95 (207)
T 2qt1_A           18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMES--A   95 (207)
T ss_dssp             SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHH--H
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhC--C
Confidence            4567899999999999999999999988 8999999998653211          1122346666666655543321  1


Q ss_pred             ccccchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhch
Q 003460          128 LIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFP  206 (818)
Q Consensus       128 ~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p  206 (818)
                      ..|......        .......++|+||++++. +.+.+.+|.+||++++.+.++.|+..|..........+...+++
T Consensus        96 ~~~~~~~~~--------~~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~  167 (207)
T 2qt1_A           96 RHSVVSTDQ--------ESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWP  167 (207)
T ss_dssp             TTSSCCC-------------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHH
T ss_pred             CCCCcCCCe--------eecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhH
Confidence            112211111        112345689999998886 56778899999999999999999888753222222233345666


Q ss_pred             hhhhccCCccccCcEE--EECCC
Q 003460          207 LFRKHIEPDLHHAQIR--INNRF  227 (818)
Q Consensus       207 ~~~~~Iep~~~~ADiI--I~N~~  227 (818)
                      .|..+++.....||.+  |+|+.
T Consensus       168 ~~~~~~~~~~~~~~~v~~Id~~~  190 (207)
T 2qt1_A          168 MYLKYRQEMQDITWEVVYLDGTK  190 (207)
T ss_dssp             HHHHHHHHGGGCSSCCEEEETTS
T ss_pred             HHHHHHHHHHhcCCeEEEecCCC
Confidence            6655554445667755  78873

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.40  E-value=2.2e-13  Score=138.12  Aligned_cols=152  Identities=19%  Similarity=0.211  Sum_probs=90.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCC-----------------CCcccHHHHHHHHHh----
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGND-----------------LDSIDFDALVQNLQD----  120 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~-----------------~~~~d~~~l~~~L~~----  120 (818)
                      +++|||+|++||||||+++.|++ +|..++++|++++.....+.                 .+..+...+.+.+..    
T Consensus         2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~   80 (206)
T 1jjv_A            2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED   80 (206)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence            46899999999999999999988 89999999998764322110                 011222222221110    


Q ss_pred             hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHH
Q 003460          121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL  200 (818)
Q Consensus       121 l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~  200 (818)
                      +.....+.+|.+........     .......+|+||.++++..+...+|.+|||+++.+++++|...|+.   .+.+.+
T Consensus        81 ~~~l~~~~~p~v~~~~~~~~-----~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~---~~~e~~  152 (206)
T 1jjv_A           81 KLWLNNLLHPAIRERMKQKL-----AEQTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRDN---NNFEQI  152 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-----HTCCSSEEEEECTTTTTTTCGGGCSEEEEEECCHHHHHHHHC--------CHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHH-----HhcCCCEEEEEechhhhcCcHhhCCEEEEEECCHHHHHHHHHHcCC---CCHHHH
Confidence            00001122233322221111     1112347899999887765778899999999999999999988863   244444


Q ss_pred             HHhh---chhhhhccCCccccCcEEEECCC
Q 003460          201 IDSI---FPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       201 ~~~~---~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      .+++   .+...     ..+.||++|+|+.
T Consensus       153 ~~r~~~q~~~~~-----~~~~ad~vIdn~~  177 (206)
T 1jjv_A          153 QRIMNSQVSQQE-----RLKWADDVINNDA  177 (206)
T ss_dssp             HHHHHHSCCHHH-----HHHHCSEEEECCS
T ss_pred             HHHHHhcCChHH-----HHHhCCEEEECCC
Confidence            4333   23322     2457999999984

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.40  E-value=2.3e-13  Score=138.91  Aligned_cols=160  Identities=21%  Similarity=0.177  Sum_probs=114.7

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch----h-----h----hhcccCCCcccccHHHHHHHHH--
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS----E-----Q----VKDFKYDDFSSLDLSLLSKNIS--  578 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~----~-----~----~~~~~~d~p~t~D~~ll~~~L~--  578 (818)
                      ....+-||++|++||||||+++.|++ +|++++++|...+.    .     +    .+..-++.-+++|...|.+.+.  
T Consensus         6 ~~~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d   84 (210)
T 4i1u_A            6 HHHMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSD   84 (210)
T ss_dssp             CCSCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHC
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCC
Confidence            34578899999999999999999998 99999999987653    1     1    1111234457899999888663  


Q ss_pred             --HHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccC
Q 003460          579 --DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMG  655 (818)
Q Consensus       579 --~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg  655 (818)
                        .++.-+.+.+|..-.....+..      ..+.+++++|..+++. ..+...+|..|+|++|.++++.|.+.||    |
T Consensus        85 ~~~~~~L~~i~HP~I~~~~~~~~~------~~~~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd----g  154 (210)
T 4i1u_A           85 EDARRRLEAITHPLIRAETEREAR------DAQGPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRN----G  154 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH------TCCSSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHH----C
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHH------hcCCCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhcC----C
Confidence              2333345666765443322221      1134689999999999 8999999999999999999999999997    4


Q ss_pred             cccch-hhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460          656 CFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRND  689 (818)
Q Consensus       656 ~~~~~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~  689 (818)
                      .+.++ ........|..++     .+.||+||+|+
T Consensus       155 ~s~eea~~ri~~Q~~~eek-----~~~AD~VIdN~  184 (210)
T 4i1u_A          155 FTREQVEAIIARQATREAR-----LAAADDVIVND  184 (210)
T ss_dssp             CCHHHHHHHHHHSCCHHHH-----HHTCSEEEECS
T ss_pred             CCHHHHHHHHHHcCChHHH-----HHhCCEEEECC
Confidence            44433 2344444554333     47899999987

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.39  E-value=9.8e-13  Score=133.53  Aligned_cols=163  Identities=19%  Similarity=0.263  Sum_probs=110.2

Q ss_pred             cCCCCEEEeeeCCCCccHHHHHHHHHHHh-CCcccccccccchhhhhc------ccCCCcccccHHHHHHHHHHHhcCCc
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQVKD------FKYDDFSSLDLSLLSKNISDIRNGRR  585 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~l-g~~vis~Ddfy~~~~~~~------~~~d~p~t~D~~ll~~~L~~L~~g~~  585 (818)
                      ..+.+.+|||+|++||||||+++.|+..+ ++.++++|+|+.+.+...      .+++.++++|...+.+.+..+.++. 
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~-   95 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMESA-   95 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHHH-
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhCC-
Confidence            34567899999999999999999999988 899999999987643211      1234566788888888776654421 


Q ss_pred             eecccccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccchhhHH
Q 003460          586 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIM  664 (818)
Q Consensus       586 v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~  664 (818)
                       ..|....         ......+.+++|+||++++. +.+.+.+|..+|++++.+.++.|+..|....  ... ...+.
T Consensus        96 -~~~~~~~---------~~~~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~--e~~-~~~~~  162 (207)
T 2qt1_A           96 -RHSVVST---------DQESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRSTRVYQP--PDS-PGYFD  162 (207)
T ss_dssp             -TTSSCCC--------------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHHSCCSS--CCC-TTHHH
T ss_pred             -CCCCcCC---------CeeecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHHcCCCc--cch-HHHHH
Confidence             1221111         11112346799999998875 5677889999999999999999987774211  111 11233


Q ss_pred             HhhcchhhhhccccCCcccEE--EeCC
Q 003460          665 MTVFPMFQQHIEPHLVHAHLK--IRND  689 (818)
Q Consensus       665 ~~v~p~~~~~I~p~~~~ADiv--I~n~  689 (818)
                      ..+++.|..+++.....||.+  |+|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~v~~Id~~  189 (207)
T 2qt1_A          163 GHVWPMYLKYRQEMQDITWEVVYLDGT  189 (207)
T ss_dssp             HTHHHHHHHHHHHGGGCSSCCEEEETT
T ss_pred             HHHhHHHHHHHHHHHhcCCeEEEecCC
Confidence            467777776655555566655  7765

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.37  E-value=1.4e-12  Score=133.50  Aligned_cols=156  Identities=19%  Similarity=0.129  Sum_probs=94.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCC-----------------CCcccHHHHHHHHHh---
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGND-----------------LDSIDFDALVQNLQD---  120 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~-----------------~~~~d~~~l~~~L~~---  120 (818)
                      .+++|+|+|++||||||+++.|++ +|..++++|.+++.....+.                 .+.++...+...+..   
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~   81 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE   81 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence            468999999999999999999998 99999999998764332111                 112333333322211   


Q ss_pred             -hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHH
Q 003460          121 -LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDS  199 (818)
Q Consensus       121 -l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~  199 (818)
                       +...+.+..|.+.........     .....++++|+.+++...+...+|.+|||+++.+.+++|...|+.........
T Consensus        82 ~~~~l~~~~~p~v~~~~~~~~~-----~~~~~~vi~~~~~l~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~  156 (218)
T 1vht_A           82 EKNWLNALLHPLIQQETQHQIQ-----QATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQ  156 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-----HCCSSEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHHTCCHHHHHH
T ss_pred             HHHHHHHhHCHHHHHHHHHHHH-----hcCCCEEEEEeeeeeccCccccCCEEEEEECCHHHHHHHHHHcCCCCHHHHHH
Confidence             000011222332222111111     00234788999887765566789999999999999999998886322112222


Q ss_pred             HHHhhchhhhhccCCccccCcEEEECCC
Q 003460          200 LIDSIFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       200 ~~~~~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      ......+.+..     ...||++|+|+.
T Consensus       157 ~~~~~~~~~~~-----~~~ad~vId~~~  179 (218)
T 1vht_A          157 ILAAQATREAR-----LAVADDVIDNNG  179 (218)
T ss_dssp             HHHHSCCHHHH-----HHHCSEEEECSS
T ss_pred             HHHhcCChHHH-----HHhCCEEEECCC
Confidence            23333333322     456899999985

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.36  E-value=5.9e-13  Score=142.43  Aligned_cols=163  Identities=13%  Similarity=0.164  Sum_probs=104.2

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------h-hcc--c-CCCcccccHHHHHHHH---
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V-KDF--K-YDDFSSLDLSLLSKNI---  577 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~---------~-~~~--~-~d~p~t~D~~ll~~~L---  577 (818)
                      .++|++|||+|++||||||+|+.|+ .+|+.++++|++++..-         . ..+  . ++..+.+|...+...+   
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~  150 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN  150 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence            3468999999999999999999999 58999999999954310         0 011  1 1122456766654322   


Q ss_pred             -HHHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCc
Q 003460          578 -SDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC  656 (818)
Q Consensus       578 -~~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~  656 (818)
                       ..+...+.+..|.+.....++..  ... ..+.++||+||.+++...+...+|..||+++|.++++.|.+.|+    |.
T Consensus       151 ~~~~~~l~~i~~P~i~~~~~~~~~--~~~-~~~~~~vIveg~~l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~----g~  223 (281)
T 2f6r_A          151 KKQMKILTDIVWPVIAKLAREEMD--VAV-AKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVERD----GL  223 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--HHH-HTTCCEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHH----CC
T ss_pred             HHHHHHhhcccChHHHHHHHHHHH--HHh-ccCCCEEEEEechhhccchHHhCCEEEEEcCCHHHHHHHHHHcC----CC
Confidence             12222234556665544433321  111 12347899999988877777889999999999999999999886    33


Q ss_pred             ccch-hhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460          657 FMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRND  689 (818)
Q Consensus       657 ~~~~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~  689 (818)
                      +.+. .+.+....+.. .++    ..||++|+|+
T Consensus       224 s~e~~~~ri~~q~~~~-~~~----~~AD~vIdn~  252 (281)
T 2f6r_A          224 SEAAAQSRLQSQMSGQ-QLV----EQSNVVLSTL  252 (281)
T ss_dssp             CHHHHHHHHHTSCCHH-HHH----HTCSEEEECS
T ss_pred             CHHHHHHHHHHcCChH-hhH----hhCCEEEECC
Confidence            3332 12222223322 221    3689999986

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.33  E-value=6e-13  Score=134.57  Aligned_cols=150  Identities=12%  Similarity=0.127  Sum_probs=91.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCC-----------------CCcccHHHHHHHHHhhhcC
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGND-----------------LDSIDFDALVQNLQDLTEG  124 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~-----------------~~~~d~~~l~~~L~~l~~~  124 (818)
                      |++|+|+|++||||||+++.|++ +|+.++++|++++.....+.                 .+..+...+.+.    ...
T Consensus         1 m~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~----~f~   75 (204)
T 2if2_A            1 MKRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADI----VFK   75 (204)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHT----TSS
T ss_pred             CeEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHH----HhC
Confidence            45799999999999999999999 99999999998765332110                 012222222211    111


Q ss_pred             Cc--------cccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcC
Q 003460          125 KD--------TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCS  196 (818)
Q Consensus       125 ~~--------i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s  196 (818)
                      .+        +..|.+........    .......++|+||.+++...+...+|.+|||+++.+++++|...|.    .+
T Consensus        76 ~~~~~~~l~~l~~~~v~~~~~~~~----~~~~~~~~vive~~~l~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~----~~  147 (204)
T 2if2_A           76 DEEKLRKLEEITHRALYKEIEKIT----KNLSEDTLFILEASLLVEKGTYKNYDKLIVVYAPYEVCKERAIKRG----MS  147 (204)
T ss_dssp             CHHHHHHHHHHHHHHHTTTHHHHH----HHSCTTCCEEEECSCSTTTTCGGGSSEEEEECCCHHHHHHHHHHTC----CC
T ss_pred             CHHHHHHHHHhhCHHHHHHHHHHH----HhccCCCEEEEEccccccCCchhhCCEEEEEECCHHHHHHHHHHcC----CC
Confidence            10        01111111110000    0011115899999988877777789999999999999999998872    34


Q ss_pred             HHHHHHhhchhhhhccCCccccCcEEEECC
Q 003460          197 LDSLIDSIFPLFRKHIEPDLHHAQIRINNR  226 (818)
Q Consensus       197 ~e~~~~~~~p~~~~~Iep~~~~ADiII~N~  226 (818)
                      .+++.+++...+..  .+....||++|+|+
T Consensus       148 ~~~~~~~~~~~~~~--~~~~~~ad~vId~~  175 (204)
T 2if2_A          148 EEDFERRWKKQMPI--EEKVKYADYVIDNS  175 (204)
T ss_dssp             HHHHHHHHTTSCCH--HHHGGGCSEECCCS
T ss_pred             HHHHHHHHHhCCCh--hHHHhcCCEEEECC
Confidence            44444433222111  12356789999988

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.30  E-value=1e-12  Score=132.21  Aligned_cols=158  Identities=13%  Similarity=0.106  Sum_probs=93.8

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc-cCC--------C---CCcccHHHHHHHHHhh----h
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-EGN--------D---LDSIDFDALVQNLQDL----T  122 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~-~~~--------~---~~~~d~~~l~~~L~~l----~  122 (818)
                      .+++.+|+|+|++||||||+++.|++. |+.++++|++++... ...        .   .+.++...+.+.+..-    .
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~~~~~~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~~~   83 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLK   83 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHH
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhcCChHHHHHHHHHHHHhCCCcCHHHHHHHHhCCHHHHH
Confidence            346789999999999999999999997 999999999865332 100        0   1123333332211100    0


Q ss_pred             cCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHH
Q 003460          123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID  202 (818)
Q Consensus       123 ~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~  202 (818)
                      ..+.+.+|.+.   ...+..  .......+||+||.+++...+...+|.+|||+++.+.++.|...|+..........+.
T Consensus        84 ~l~~~~~~~i~---~~~i~~--~~~~g~~~vi~d~~~l~~~~~~~~~d~~i~l~~~~e~~~~R~~~R~~~~~~~~~~~i~  158 (203)
T 1uf9_A           84 ALEAVVHPEVR---RLLMEE--LSRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMARSGLSREEVLARER  158 (203)
T ss_dssp             HHHHHHHHHHH---HHHHHH--HHTCCCSEEEEECTTTTTTTCGGGSSEEEEECCCHHHHHHHHHTTTCCTTHHHHHHHT
T ss_pred             HHHHHhChHHH---HHHHHH--hhhcCCCEEEEEecceeccCchhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            00001112111   011100  0122256899999988776666778999999999999999998886322222222222


Q ss_pred             hhchhhhhccCCccccCcEEEECCC
Q 003460          203 SIFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       203 ~~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      ...+.+.     ....||++|+|+.
T Consensus       159 ~~~~~~~-----~~~~ad~vId~~~  178 (203)
T 1uf9_A          159 AQMPEEE-----KRKRATWVLENTG  178 (203)
T ss_dssp             TSCCHHH-----HHHHCSEEECCSS
T ss_pred             HCCChhH-----HHHhCCEEEECCC
Confidence            2333322     1457899998883

>3v85_A CYTH-like phosphatase; CYTH domain, hydrolase; HET: CIT; 1.90A {Arabidopsis thaliana}

Probab=99.26  E-value=4.4e-12  Score=129.85  Aligned_cols=129  Identities=9%  Similarity=0.049  Sum_probs=105.6

Q ss_pred             ccccccccccccceeeccCCCCCcchhhhccCCeeeEeeeCC-----------EEEEEEcceeecCCCcccCceeEEEEe
Q 003460          249 SISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGI-----------RYYLSIGDQRIVDKNFIIRPKAEFEVG  317 (818)
Q Consensus       249 ~~~~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~~-----------~~~lt~Kg~~~~~~~~~~k~r~E~ev~  317 (818)
                      .+..+.....|.|+|||+|+++++.++.++     |||..++           +..+|||+|.....+.  ..+.|.+..
T Consensus        22 ~~~~~~~~~~~~~~y~dt~~~~l~~~~~~l-----r~R~~~~~~e~~~~~~~~~~~~TlK~~~~~~~~~--~~~~e~~~~   94 (210)
T 3v85_A           22 LTPYHLKTLHQRNTFFDTPKNDLSLRRAVL-----RLRFLQNAAVSAASPSPPRCIVSLKAKPTLANGI--SRVEEDEEE   94 (210)
T ss_dssp             TGGGEEEEEEEEEEEEECTTCHHHHTTEEE-----EEEEEEC------CCCCCEEEEEEEEEEEEETTE--EEEEEEEEE
T ss_pred             ccccccceEEEEEEEEeCCCHHHHhCCcEE-----EEEEeCCccceeccCCCcceEEEEecCCcCCCCc--eeEEEEeec
Confidence            344556677899999999999999999999     9997643           6789999999888885  778888877


Q ss_pred             c---c------------------------HHHHHHhcCCceeEEEEEEEEEEEeCCEEEEEeccC-CCCCCeEEEEec--
Q 003460          318 R---M------------------------TLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETID-TLDETFMVLRGT--  367 (818)
Q Consensus       318 v---~------------------------~~~~L~~LGf~~~~~~~K~R~~~~~~~~~i~lD~v~-~lg~~fvEiE~~--  367 (818)
                      +   .                        +..++..+||.+.+.++|.|..|.+++..|+||.+. ..|. |+|||..  
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~~~l~~~~~~~t~R~e~~~~~~~l~LD~~~~~~g~-~~ELEle~~  173 (210)
T 3v85_A           95 IEYWIGKECVESPAKLSDIGSRVLKRVKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGN-CYEIECETE  173 (210)
T ss_dssp             ECHHHHHHHHHCGGGGGGCCCHHHHHHHHHHTCSCSTTCEEEEEEEEEEEEEEETTEEEEEEEEEETTEE-EEEEEEECS
T ss_pred             CChhHHHHhhhhhhccccCChHHHHHHHHhhccccccceEEEEEEEEEEEEEEeCCEEEEEeeeeeCCcE-EEEEEEEeC
Confidence            5   1                        122345689999999999999999999999999998 4577 9999987  


Q ss_pred             CH----HHHHHHHHHcCCCCCc
Q 003460          368 NR----KTVGAEALRMGINGPW  385 (818)
Q Consensus       368 ~~----~~i~~~~~~Lgl~~~~  385 (818)
                      |.    +.+.++++++||+-..
T Consensus       174 d~e~~~~~~~~lL~~~gI~~~~  195 (210)
T 3v85_A          174 EPERVKTMIEEFLTEEKIEFSN  195 (210)
T ss_dssp             CHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCcCc
Confidence            33    6678899999997644

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=99.25  E-value=2.6e-12  Score=140.05  Aligned_cols=170  Identities=18%  Similarity=0.160  Sum_probs=117.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--ecccccCC-CCCcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR  139 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~-~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~  139 (818)
                      .+|+|+||+||||||||..|++.+++.+|++|++  |+++.... .+..-+...+..+|.++..+.. .++.+++....+
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~-~~~~~dF~~~a~   86 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDA-SFSAYEFKKRAE   86 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTS-CCCHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCcc-ccCHHHHHHHHH
Confidence            6899999999999999999999999999999998  88765432 1211122222223334444444 567777776665


Q ss_pred             ccccccccCCccEEEEEecccchhhhhcCCCEEEEEE-cCHH--HHHHHHHHhccCCCc--CHHHHHHhhchhhhhccCC
Q 003460          140 IGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVV-GGVH--FSLISKVQYDIGDSC--SLDSLIDSIFPLFRKHIEP  214 (818)
Q Consensus       140 ~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vd-a~~e--~~l~Rri~Rd~~~~~--s~e~~~~~~~p~~~~~Iep  214 (818)
                      .....+..+...+||++|.+++.+.+...+|  +|++ ++.+  .+++|++.| ...++  .+.+.++.+.|.+.++|.|
T Consensus        87 ~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~r-~~~~G~~~l~~~L~~vdP~~a~~I~p  163 (340)
T 3d3q_A           87 KYIKDITRRGKVPIIAGGTGLYIQSLLYNYA--FEDESISEDKMKQVKLKLKE-LEHLNNNKLHEYLASFDKESAKDIHP  163 (340)
T ss_dssp             HHHHHHHHTTCEEEEECCCHHHHHHHHBCSC--CC---CCHHHHHHHHHHHHT-TSSSCHHHHHHHHHHHCHHHHHHSCT
T ss_pred             HHHHHHHhCCCcEEEECChhhhHHHHHhccc--ccCCCCChHHHHHHHHHHHH-HHhcCHHHHHHHHHhhCcHHHhhcCc
Confidence            4333334456678889999988888887776  6788 8887  678888888 55543  3445566778888887655


Q ss_pred             ccccCcEEEECCCCCChhhhhhcccCccc-CCcccccccc
Q 003460          215 DLHHAQIRINNRFVSSFREAIYKLKCRSE-APGACSISAF  253 (818)
Q Consensus       215 ~~~~ADiII~N~~~~~~~~~~~~l~~~~~-~l~~~~~~~~  253 (818)
                                ||       ++.++++++. ..+|...+.+
T Consensus       164 ----------~d-------~~Ri~RALEv~~~tG~~~s~~  186 (340)
T 3d3q_A          164 ----------NN-------RKRVLRAIEYYLKTKKLLSSR  186 (340)
T ss_dssp             ----------TC-------HHHHHHHHHHHHHHCSCSHHH
T ss_pred             ----------cC-------chhhhhHHHHHHHhCCChHHH
Confidence                      56       7888888887 6667665544

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.24  E-value=1.8e-11  Score=123.51  Aligned_cols=155  Identities=14%  Similarity=0.140  Sum_probs=90.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccC---CCCCcccHHHHHHHHHhhh--------------cCCc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG---NDLDSIDFDALVQNLQDLT--------------EGKD  126 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~---~~~~~~d~~~l~~~L~~l~--------------~~~~  126 (818)
                      +|+|+|++||||||+|+.|++.+|+.++++|++++.....   ......+.+.+.+.+..+.              .|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   83 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED   83 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence            8999999999999999999999999999999998743210   0011112233333332211              1111


Q ss_pred             cccccchhh---------hhcccccc----ccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCC
Q 003460          127 TLIPMFDYQ---------QKNRIGSK----VIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGD  193 (818)
Q Consensus       127 i~~p~~d~~---------~~~~~~~~----~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~  193 (818)
                      +..+.....         .++.+...    .....  ..+|+||..++ ..+.+.+|++|||++|.+.+++|+..|+.  
T Consensus        84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~g~~~~-~~~~~~~d~~i~l~a~~e~~~~R~~~r~~--  158 (208)
T 3ake_A           84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAEGRDMG-TAVFPEAAHKFYLTASPEVRAWRRARERP--  158 (208)
T ss_dssp             CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEEESSCC-CCCCTTCSEEEEEECCHHHHHHHHHHTSS--
T ss_pred             CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEEcccee-EEEecCCcEEEEEECCHHHHHHHHHhhcc--
Confidence            110000000         00100000    00011  47899999877 34556789999999999999999998864  


Q ss_pred             CcCHHHHHHhhc---hhhhhccCCccccCc-EEEECCC
Q 003460          194 SCSLDSLIDSIF---PLFRKHIEPDLHHAQ-IRINNRF  227 (818)
Q Consensus       194 ~~s~e~~~~~~~---p~~~~~Iep~~~~AD-iII~N~~  227 (818)
                       .+.+++.+.+.   +.+..+.   ...|| ++|+|+.
T Consensus       159 -~~~~~~~~~~~~R~~~~~~~~---~~~ad~~~Id~~~  192 (208)
T 3ake_A          159 -QAYEEVLRDLLRRDERDKAQS---APAPDALVLDTGG  192 (208)
T ss_dssp             -SCHHHHHHHHHHHHHTC--CC---CCCTTCEEEETTT
T ss_pred             -cCHHHHHHHHHHHHHHHhhcc---cCCCCEEEEECCC
Confidence             33444433322   2222111   45688 9999873

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.21  E-value=8.2e-12  Score=126.50  Aligned_cols=158  Identities=20%  Similarity=0.212  Sum_probs=89.3

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhh----------hccc---CCCcccccHHHHHHHHHH----
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----------KDFK---YDDFSSLDLSLLSKNISD----  579 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~----------~~~~---~d~p~t~D~~ll~~~L~~----  579 (818)
                      +++|||+|++||||||+++.|+. +|..+++.|++++....          ..+.   +...+..+...+.+.+..    
T Consensus         2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~   80 (206)
T 1jjv_A            2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED   80 (206)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence            46899999999999999999988 89999999999864110          0011   111123343333322100    


Q ss_pred             HhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccc
Q 003460          580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS  659 (818)
Q Consensus       580 L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~  659 (818)
                      +.....+..|.+........     . ......+|+||.+++...+...+|..||++++.++++.|...|+    |.+.+
T Consensus        81 ~~~l~~~~~p~v~~~~~~~~-----~-~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~e  150 (206)
T 1jjv_A           81 KLWLNNLLHPAIRERMKQKL-----A-EQTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRD----NNNFE  150 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-----H-TCCSSEEEEECTTTTTTTCGGGCSEEEEEECCHHHHHHHHC---------CHH
T ss_pred             HHHHHhccCHHHHHHHHHHH-----H-hcCCCEEEEEechhhhcCcHhhCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence            00001123344333221111     0 01135789999877665477889999999999999999999886    33332


Q ss_pred             h-hhHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460          660 Q-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF  690 (818)
Q Consensus       660 ~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~~  690 (818)
                      . .+......+..     +....||++|+|+-
T Consensus       151 ~~~~r~~~q~~~~-----~~~~~ad~vIdn~~  177 (206)
T 1jjv_A          151 QIQRIMNSQVSQQ-----ERLKWADDVINNDA  177 (206)
T ss_dssp             HHHHHHHHSCCHH-----HHHHHCSEEEECCS
T ss_pred             HHHHHHHhcCChH-----HHHHhCCEEEECCC
Confidence            2 12222222222     22347999999874

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.20  E-value=1.3e-11  Score=120.22  Aligned_cols=154  Identities=18%  Similarity=0.144  Sum_probs=88.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccc
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS  142 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~  142 (818)
                      ++|+|+|++||||||+|+.| +.+|..++++|++.+...........+...+...+... .+....    .....     
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~-----   70 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI-YGDGVV----ARLCV-----   70 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH-HCTTHH----HHHHH-----
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh-CCHHHH----HHHHH-----
Confidence            47999999999999999999 88999999999986642211112222222222222211 011111    00000     


Q ss_pred             cccccCCccEEEEEecccch--hhhhc---CCCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHHHHhhchhhhhccCCcc
Q 003460          143 KVIKGASSGVVIVDGTYALD--ARLRS---LLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHIEPDL  216 (818)
Q Consensus       143 ~~~~~~~~~vVIvEG~~l~~--~~l~~---~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~~~~~p~~~~~Iep~~  216 (818)
                      ..+.......+|+||.....  ..+..   ..+..|||++|.+++.+|...|+.... .+.+++.+++.......+.+..
T Consensus        71 ~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~~  150 (179)
T 3lw7_A           71 EELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVI  150 (179)
T ss_dssp             HHHCSCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHhcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccChHhHH
Confidence            01111335679999973222  23333   335899999999999999999875432 4566665543221111123345


Q ss_pred             ccCcEEEECCC
Q 003460          217 HHAQIRINNRF  227 (818)
Q Consensus       217 ~~ADiII~N~~  227 (818)
                      ..||++|+|+.
T Consensus       151 ~~ad~vId~~~  161 (179)
T 3lw7_A          151 AMADYIITNDS  161 (179)
T ss_dssp             HTCSEEEECCS
T ss_pred             HhCCEEEECCC
Confidence            78999999984

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=99.19  E-value=1.3e-12  Score=142.42  Aligned_cols=153  Identities=14%  Similarity=0.204  Sum_probs=101.8

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc--cchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE  594 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf--y~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~  594 (818)
                      +.+|+|+||+||||||||..|+..+++.+||+|+|  |+......   ..|..-+...+..+|..+..+.. ..|.|||.
T Consensus         7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~T---akp~~eE~~~v~hhl~di~~~~~-~~~~~dF~   82 (340)
T 3d3q_A            7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGT---AKVTTEEMEGIPHYMIDILPPDA-SFSAYEFK   82 (340)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTT---TCCCTTTTTTCCEESSSCBCTTS-CCCHHHHH
T ss_pred             CceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccc---cCCCHHHHHHHHHHHHHHhCCcc-ccCHHHHH
Confidence            36899999999999999999999999999999999  77532110   00100000000111222333333 56777777


Q ss_pred             ccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEE-cChh--HHHHHHHhcCccccCcccchhhHHHhhcchh
Q 003460          595 TGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVV-GGVH--SHLISRVQRDKSRMGCFMSQNDIMMTVFPMF  671 (818)
Q Consensus       595 ~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~-~~~d--~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~  671 (818)
                      .+.+...... ...+..+||++|..++.+.+.+.+|  +|++ ++.+  .|+.|++.| ..++|.. ...+++..+.|.+
T Consensus        83 ~~a~~~i~~i-~~~g~~~IlvGGt~ly~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~r-~~~~G~~-~l~~~L~~vdP~~  157 (340)
T 3d3q_A           83 KRAEKYIKDI-TRRGKVPIIAGGTGLYIQSLLYNYA--FEDESISEDKMKQVKLKLKE-LEHLNNN-KLHEYLASFDKES  157 (340)
T ss_dssp             HHHHHHHHHH-HHTTCEEEEECCCHHHHHHHHBCSC--CC---CCHHHHHHHHHHHHT-TSSSCHH-HHHHHHHHHCHHH
T ss_pred             HHHHHHHHHH-HhCCCcEEEECChhhhHHHHHhccc--ccCCCCChHHHHHHHHHHHH-HHhcCHH-HHHHHHHhhCcHH
Confidence            6544321111 1234567888888877788888776  6777 7777  789999999 8888864 2367888999999


Q ss_pred             hhhcccc
Q 003460          672 QQHIEPH  678 (818)
Q Consensus       672 ~~~I~p~  678 (818)
                      .++|+|.
T Consensus       158 a~~I~p~  164 (340)
T 3d3q_A          158 AKDIHPN  164 (340)
T ss_dssp             HHHSCTT
T ss_pred             HhhcCcc
Confidence            9999885

>3tj7_A GBAA_1210 protein; structural genomics, adenosine monophosphate, center for STR genomics of infectious diseases, csgid; HET: AMP; 2.10A {Bacillus anthracis} PDB: 3sy3_A*

Probab=99.19  E-value=9.7e-11  Score=118.18  Aligned_cols=119  Identities=13%  Similarity=0.097  Sum_probs=99.4

Q ss_pred             ccccccceeeccCCCCCcchhhhccCCeeeEeeeCCEEEEEEcceeecCCCcccCceeEEEEec----------------
Q 003460          255 GNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----------------  318 (818)
Q Consensus       255 ~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----------------  318 (818)
                      ....+.++|||.|+++++.++.++     |||..|++..+|+|+|...       .+.|+++.+                
T Consensus        32 ~~~~~~n~YfDTpd~~L~~~~~~L-----RiR~~~~~~~~TlK~~~~~-------g~~E~~~~l~~~ea~~~l~~~~~p~   99 (195)
T 3tj7_A           32 VFTKQVNHYFETPNSSLKEAGSAL-----RIRHKGETYTLTLKQPAEV-------GLLETHQVVTENEAKMMMETNVIIS   99 (195)
T ss_dssp             CCEEEEEEEEECTTCHHHHTTCEE-----EEEEETTEEEEEEEEECSS-------SEEEEEEEECHHHHHHHHHSSCCCS
T ss_pred             ceEEEEEEEEeCCcHhHHhCCCEE-----EEEeECCeEEEEEeeCCCC-------CceEEEeeCCHHHHHHHhhcCCCCh
Confidence            456789999999999999999999     9999999999999987643       257888777                


Q ss_pred             -cHHHHHHhcCCce-----eEEEEEEEEEEEeCCEEEEEeccCCCCCC-e-EEEEecCH----HHHHHHHHHcCCCCCc
Q 003460          319 -MTLGGLLDLGYSV-----VASYKRASTYVVYGNLSVSFETIDTLDET-F-MVLRGTNR----KTVGAEALRMGINGPW  385 (818)
Q Consensus       319 -~~~~~L~~LGf~~-----~~~~~K~R~~~~~~~~~i~lD~v~~lg~~-f-vEiE~~~~----~~i~~~~~~Lgl~~~~  385 (818)
                       .+.++|..+||..     ++.+++.|..|.+.+..++||++.++|.. | +|+|..+.    +.+.++++.+|+....
T Consensus       100 ~~i~~~l~~~g~~~~~l~~~g~l~t~R~e~~~~~g~l~LD~~~y~~~~dyElE~E~~d~~~~~~~~~~lL~~~gi~~~~  178 (195)
T 3tj7_A          100 GAVMNQLCKLQIPVSALTYMGSLTTERAETLFEGGTLVFDHSFYYNHDDYEIEFEVQDEETGKAAFIHLLKQHNIPIRH  178 (195)
T ss_dssp             SHHHHHHHHHTCCGGGCEEEEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEEEESCHHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHcCCCccceEEEEEEEEEEEEEEecCCEEEEEEecCCCcEEEEEEEEeCCHHHHHHHHHHHHHHCCCCcCC
Confidence             3777999999887     59999999999998889999999988863 3 55554443    6788999999998754

>2gfg_A BH2851; antiparallel barrel, structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, unknow function; 2.12A {Bacillus halodurans}

Probab=99.15  E-value=2.3e-10  Score=115.59  Aligned_cols=115  Identities=10%  Similarity=0.081  Sum_probs=97.0

Q ss_pred             cccceeeccCCCCCcchhhhccCCeeeEeeeCCEEEEEEcceeecCCCcccCceeEEEEecc-----------------H
Q 003460          258 AQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRM-----------------T  320 (818)
Q Consensus       258 ~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v~-----------------~  320 (818)
                      .|.++|||+|+++++..+.++     |||..|+++.+|+|+|...       .|.|+|+.|.                 +
T Consensus        35 ~~~n~YfDTpd~~L~~~~~aL-----RiR~~~~~~~~TlK~~~~~-------gR~E~e~~l~~~~~~~~l~~~~~p~~~~  102 (193)
T 2gfg_A           35 LQRNHYFETDDFQLKKQSSAL-----RIREKEAIFTFTLKQPHPA-------GLLETNQTLSKQEAKLALESAHFPSGEV  102 (193)
T ss_dssp             EEEEEEEECTTCHHHHTTCEE-----EEEEETTEEEEEEEEECSS-------SEEEEEEEECHHHHHHHHHHCCCCCSHH
T ss_pred             eeEEEeeeCCCHHHHhCCCEE-----EEEeeCCcEEEEEccCCCC-------CCceEeccCCchhhhhhcccccCCcHHH
Confidence            488999999999999999999     9999999999999987541       4899999982                 5


Q ss_pred             HHHHHhcCCce-----eEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec--CH----HHHHHHHHHcCCCCC
Q 003460          321 LGGLLDLGYSV-----VASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR----KTVGAEALRMGINGP  384 (818)
Q Consensus       321 ~~~L~~LGf~~-----~~~~~K~R~~~~~~~~~i~lD~v~~lg~~fvEiE~~--~~----~~i~~~~~~Lgl~~~  384 (818)
                      ..+|..+|+..     +..++|.|..|.+++.+++||.....|.++.|||..  +.    +.+.++++.+|+...
T Consensus       103 ~~~l~~~~~~~~~L~~~~~~~~~R~~~~~~~gev~lD~~~~~~~~~~ElE~El~~~~~~~~~~~~~l~~~gi~~~  177 (193)
T 2gfg_A          103 MDALRDLSIPISQLKHIGTLSTSRAEISYEQGILCLDHSSYLGIEDYEIEFEGTSEEHATVTFQEILKTFSISQV  177 (193)
T ss_dssp             HHHHHHTTCCGGGCEEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHhcCCccceEEEEEEEEEEEEEEeCCcEEEEeccEecCCeeEEEEEEECCcHHHHHHHHHHHHHCCCCcC
Confidence            67888899774     899999999999988899999999888656777754  43    356788889999753

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=99.14  E-value=7e-11  Score=122.65  Aligned_cols=173  Identities=13%  Similarity=0.175  Sum_probs=101.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc---cCCCCCcccHHHHHHHHHhhh--c-----CCcccc-
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD---EGNDLDSIDFDALVQNLQDLT--E-----GKDTLI-  129 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~---~~~~~~~~d~~~l~~~L~~l~--~-----~~~i~~-  129 (818)
                      .+++|+|+|++||||||+++.|++.+|..++++|.+|+...   .....+.-|.+.+.+.+..+.  .     ++.+.+ 
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~   87 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA   87 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence            46789999999999999999999999999999999988532   111122334444444444321  0     011111 


Q ss_pred             ----------ccchh---------hhhccc-cccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHh
Q 003460          130 ----------PMFDY---------QQKNRI-GSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQY  189 (818)
Q Consensus       130 ----------p~~d~---------~~~~~~-~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~R  189 (818)
                                +.++.         ...... ..+.........+|+||--+..- +.+..+++|||+|+.+.|.+|+.++
T Consensus        88 g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~-V~pda~lkifl~A~~e~Ra~Rr~~~  166 (233)
T 3r20_A           88 GEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTV-VLPDADVKIFLTASAEERARRRNAQ  166 (233)
T ss_dssp             TEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCC-CCTTCSEEEEEECCHHHHHHHHHHH
T ss_pred             CeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeE-EcCCCCEEEEEECCHHHHHHHHHHH
Confidence                      00000         000000 00000011114578888744331 2233689999999999999999875


Q ss_pred             ccCCC--cCHHHHHHh----hchhhhhccCCccccCc-EEEECCCCCChhhhh
Q 003460          190 DIGDS--CSLDSLIDS----IFPLFRKHIEPDLHHAQ-IRINNRFVSSFREAI  235 (818)
Q Consensus       190 d~~~~--~s~e~~~~~----~~p~~~~~Iep~~~~AD-iII~N~~~~~~~~~~  235 (818)
                      ....+  .+.+++.+.    -.....++..|.+.++| ++|+++ ..++++-+
T Consensus       167 l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs-~l~iee~v  218 (233)
T 3r20_A          167 NVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTS-DMDQAQVI  218 (233)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECT-TSCHHHHH
T ss_pred             HHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECC-CCCHHHHH
Confidence            33222  455555443    34455677889888888 777666 45555544

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.12  E-value=1.1e-10  Score=119.76  Aligned_cols=162  Identities=17%  Similarity=0.155  Sum_probs=85.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc-----cCCCCCcccHHHHHHHHHhh--------------h
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-----EGNDLDSIDFDALVQNLQDL--------------T  122 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~-----~~~~~~~~d~~~l~~~L~~l--------------~  122 (818)
                      +.+|+|+|++||||||+++.|++.+|++++++|++++...     .+....  +-..+......+              .
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l   82 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVA--SEDALVPLASHLDVRFVSTNGNLEVIL   82 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTT--CHHHHHHHHHTCCEEEEEETTEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCcc--CHHHHHHHHHhCceeeeccCCCceEEE
Confidence            4689999999999999999999999999999999987432     121111  111122211111              0


Q ss_pred             cCCccccccchhh---------hhccccc----cccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHh
Q 003460          123 EGKDTLIPMFDYQ---------QKNRIGS----KVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQY  189 (818)
Q Consensus       123 ~~~~i~~p~~d~~---------~~~~~~~----~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~R  189 (818)
                      .+..+.-+..+..         .++.+..    ..........+++||..+.+ .+...+|++||++++.+++++|+..+
T Consensus        83 ~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~-~~~~~~d~~i~l~~~~e~~~~R~~~~  161 (227)
T 1cke_A           83 EGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT-VVFPDAPVKIFLDASSEERAHRRMLQ  161 (227)
T ss_dssp             TTEECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC-CCCTTCSEEEEEECCHHHHHHHHHHH
T ss_pred             CCeeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc-eEecCCCEEEEEeCCHHHHHHHHHHH
Confidence            0110000000000         0011100    00011224578999985443 34456899999999999999997543


Q ss_pred             --ccCCCcCHHHHHHhh----chhhhhccCCcccc-CcEEEECC
Q 003460          190 --DIGDSCSLDSLIDSI----FPLFRKHIEPDLHH-AQIRINNR  226 (818)
Q Consensus       190 --d~~~~~s~e~~~~~~----~p~~~~~Iep~~~~-ADiII~N~  226 (818)
                        ......+.++..+.+    .+.+.+..+|.... ++++|+|+
T Consensus       162 l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~  205 (227)
T 1cke_A          162 LQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDST  205 (227)
T ss_dssp             HHHHTCCCCHHHHHHHHC-------------CCCCTTCEEEETT
T ss_pred             HHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCC
Confidence              111112344444333    34565556666554 45888887

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.10  E-value=3.5e-11  Score=121.53  Aligned_cols=156  Identities=19%  Similarity=0.215  Sum_probs=92.2

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhh----------hcc---cCCCcccccHHHHHHHHH----HH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----------KDF---KYDDFSSLDLSLLSKNIS----DI  580 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~----------~~~---~~d~p~t~D~~ll~~~L~----~L  580 (818)
                      .+|+|+|++||||||+++.|+. +|+.++++|+++.....          ..+   .+...+..+...|.+.+.    .+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   80 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL   80 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence            4799999999999999999999 99999999999764210          001   111123555555544210    00


Q ss_pred             hcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch
Q 003460          581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ  660 (818)
Q Consensus       581 ~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~  660 (818)
                      +.-..+..|.+........     .......++|+||.+++...+...+|..||++++.++++.|...|     |.+.+.
T Consensus        81 ~~l~~l~~~~v~~~~~~~~-----~~~~~~~~vive~~~l~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R-----~~~~~~  150 (204)
T 2if2_A           81 RKLEEITHRALYKEIEKIT-----KNLSEDTLFILEASLLVEKGTYKNYDKLIVVYAPYEVCKERAIKR-----GMSEED  150 (204)
T ss_dssp             HHHHHHHHHHHTTTHHHHH-----HHSCTTCCEEEECSCSTTTTCGGGSSEEEEECCCHHHHHHHHHHT-----CCCHHH
T ss_pred             HHHHHhhCHHHHHHHHHHH-----HhccCCCEEEEEccccccCCchhhCCEEEEEECCHHHHHHHHHHc-----CCCHHH
Confidence            0000112232222111100     001111689999998776666778999999999999999999877     222221


Q ss_pred             -hhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460          661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRND  689 (818)
Q Consensus       661 -~~~~~~v~p~~~~~I~p~~~~ADivI~n~  689 (818)
                       .+......+.     .++...||++|+|+
T Consensus       151 ~~~~~~~~~~~-----~~~~~~ad~vId~~  175 (204)
T 2if2_A          151 FERRWKKQMPI-----EEKVKYADYVIDNS  175 (204)
T ss_dssp             HHHHHTTSCCH-----HHHGGGCSEECCCS
T ss_pred             HHHHHHhCCCh-----hHHHhcCCEEEECC
Confidence             1222222222     12345689998876

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.09  E-value=4.5e-10  Score=113.34  Aligned_cols=136  Identities=19%  Similarity=0.138  Sum_probs=84.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceeccc-----ccCCCCCcccHHHHHHHHHhhhcCCccccccchhh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV-----DEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ  135 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~-----~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~  135 (818)
                      .+.+|+|+|++||||||+|+.|++.+|+.++++|.++...     .....   +........+..+.             
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~---~~~~~~~~~~~~l~-------------   80 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIP---LTDDDRWPWLAAIG-------------   80 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCC---CCHHHHHHHHHHHH-------------
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCC---CCchhhHHHHHHHH-------------
Confidence            3568999999999999999999999999999999986421     11111   11111111111110             


Q ss_pred             hhccccccccccCCccEEEEEecccch---hhhhcCC---CEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhh
Q 003460          136 QKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSLL---DIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFR  209 (818)
Q Consensus       136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~~---D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~  209 (818)
                             ...  .....+|+++.++..   ..+....   +..||++++.+++++|...|+.... . .+.++.+...++
T Consensus        81 -------~~~--~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~-~-~~~~~~~~~~~~  149 (202)
T 3t61_A           81 -------ERL--ASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFM-P-SSLLQTQLETLE  149 (202)
T ss_dssp             -------HHH--TSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCC-C-HHHHHHHHHHCC
T ss_pred             -------HHH--hcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCC-C-HHHHHHHHHhcC
Confidence                   000  123356778776544   2333333   6899999999999999988874322 2 334443333322


Q ss_pred             hccCCccccCcEEEECC
Q 003460          210 KHIEPDLHHAQIRINNR  226 (818)
Q Consensus       210 ~~Iep~~~~ADiII~N~  226 (818)
                         .+....++++|+|+
T Consensus       150 ---~~~~~~~~~~Id~~  163 (202)
T 3t61_A          150 ---DPRGEVRTVAVDVA  163 (202)
T ss_dssp             ---CCTTSTTEEEEESS
T ss_pred             ---CCCCCCCeEEEeCC
Confidence               34566789999998

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.09  E-value=1.2e-10  Score=119.04  Aligned_cols=159  Identities=18%  Similarity=0.166  Sum_probs=95.1

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------h----hcccCCCcccccHHHHHHHHHH---
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V----KDFKYDDFSSLDLSLLSKNISD---  579 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~---------~----~~~~~d~p~t~D~~ll~~~L~~---  579 (818)
                      .+++|+|+|++||||||+++.|++ +|..+++.|++++...         .    +...++..+.++...+.+.+..   
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~   81 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE   81 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence            478999999999999999999998 9999999999876411         0    1111222334555554433211   


Q ss_pred             -HhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCccc
Q 003460          580 -IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM  658 (818)
Q Consensus       580 -L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~  658 (818)
                       +...+.+..|.+.........  .    ....++|+|+.++....+...+|..||++++.++++.|...|+    +.+.
T Consensus        82 ~~~~l~~~~~p~v~~~~~~~~~--~----~~~~~vi~~~~~l~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~  151 (218)
T 1vht_A           82 EKNWLNALLHPLIQQETQHQIQ--Q----ATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRD----DVTR  151 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH--H----CCSSEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHH----TCCH
T ss_pred             HHHHHHHhHCHHHHHHHHHHHH--h----cCCCEEEEEeeeeeccCccccCCEEEEEECCHHHHHHHHHHcC----CCCH
Confidence             111112334443322111110  0    0235788899777654466789999999999999999998875    2222


Q ss_pred             ch-hhHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460          659 SQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF  690 (818)
Q Consensus       659 ~~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~~  690 (818)
                      +. .+......+.+.     ....||++|+|+.
T Consensus       152 ~~~~~~~~~~~~~~~-----~~~~ad~vId~~~  179 (218)
T 1vht_A          152 EHVEQILAAQATREA-----RLAVADDVIDNNG  179 (218)
T ss_dssp             HHHHHHHHHSCCHHH-----HHHHCSEEEECSS
T ss_pred             HHHHHHHHhcCChHH-----HHHhCCEEEECCC
Confidence            21 122222233222     1245899999874

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.08  E-value=6.8e-11  Score=118.81  Aligned_cols=160  Identities=16%  Similarity=0.169  Sum_probs=94.9

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh-h--hc--ccCCC---cccccHHHHHHHHHH----Hh
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ-V--KD--FKYDD---FSSLDLSLLSKNISD----IR  581 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~-~--~~--~~~d~---p~t~D~~ll~~~L~~----L~  581 (818)
                      .+++.+|+|+|++||||||+++.|++. |+.++++|++++... .  ..  ..+..   .+++|...+.+.+..    +.
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~~~~~~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~~~   83 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLK   83 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHH
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhcCChHHHHHHHHHHHHhCCCcCHHHHHHHHhCCHHHHH
Confidence            356899999999999999999999997 999999999986422 0  00  01100   235565555432200    00


Q ss_pred             cCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch-
Q 003460          582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-  660 (818)
Q Consensus       582 ~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~-  660 (818)
                      ....+..|.+.   ..+..  .. ...+..+||+||.+++...+...+|.+||++++.+.++.|...|+.    .+.+. 
T Consensus        84 ~l~~~~~~~i~---~~~i~--~~-~~~g~~~vi~d~~~l~~~~~~~~~d~~i~l~~~~e~~~~R~~~R~~----~~~~~~  153 (203)
T 1uf9_A           84 ALEAVVHPEVR---RLLME--EL-SRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMARSG----LSREEV  153 (203)
T ss_dssp             HHHHHHHHHHH---HHHHH--HH-HTCCCSEEEEECTTTTTTTCGGGSSEEEEECCCHHHHHHHHHTTTC----CTTHHH
T ss_pred             HHHHHhChHHH---HHHHH--Hh-hhcCCCEEEEEecceeccCchhhCCEEEEEECCHHHHHHHHHHcCC----CCHHHH
Confidence            00112233332   00000  00 0122579999998776655667789999999999999999988752    22211 


Q ss_pred             hhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460          661 NDIMMTVFPMFQQHIEPHLVHAHLKIRND  689 (818)
Q Consensus       661 ~~~~~~v~p~~~~~I~p~~~~ADivI~n~  689 (818)
                      ........+.+     +....||++|+|+
T Consensus       154 ~~~i~~~~~~~-----~~~~~ad~vId~~  177 (203)
T 1uf9_A          154 LARERAQMPEE-----EKRKRATWVLENT  177 (203)
T ss_dssp             HHHHTTSCCHH-----HHHHHCSEEECCS
T ss_pred             HHHHHHCCChh-----HHHHhCCEEEECC
Confidence            12222222222     1134688998876

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.08  E-value=2.2e-10  Score=120.29  Aligned_cols=167  Identities=14%  Similarity=0.095  Sum_probs=88.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc-----cCCCC-CcccHHHHHHHHHhhh-----------
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-----EGNDL-DSIDFDALVQNLQDLT-----------  122 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~-----~~~~~-~~~d~~~l~~~L~~l~-----------  122 (818)
                      ....+|+|+|++||||||+++.|++.||...+++|.+++...     .+... +......+...+.-..           
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  104 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL  104 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence            345689999999999999999999999999999999985321     11111 2222222222111000           


Q ss_pred             cCCccccccchhhh---------hccc----cccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHh
Q 003460          123 EGKDTLIPMFDYQQ---------KNRI----GSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQY  189 (818)
Q Consensus       123 ~~~~i~~p~~d~~~---------~~~~----~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~R  189 (818)
                      .+..+.-.......         +..+    ............+|+||..+..- +.+.+|++|||+|+.+.+.+|+...
T Consensus       105 ~~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~-v~~~~~~~ifl~A~~e~r~~R~~~~  183 (252)
T 4e22_A          105 EGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTI-VFPDAPVKIFLDASSQERAHRRMLQ  183 (252)
T ss_dssp             TTEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCC-CSTTCSEEEEEECCHHHHHHHHHHH
T ss_pred             CCeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceecee-ecCCCCEEEEEECCHHHHHHHHHHH
Confidence            00000000000000         0000    00000112234578888655332 3344799999999999999998762


Q ss_pred             ccC--CCcCHHHHHHh----hchhhhhccCCccccCc-EEEECCC
Q 003460          190 DIG--DSCSLDSLIDS----IFPLFRKHIEPDLHHAQ-IRINNRF  227 (818)
Q Consensus       190 d~~--~~~s~e~~~~~----~~p~~~~~Iep~~~~AD-iII~N~~  227 (818)
                      ...  ...+.+++.+.    ......+.+.|.+++|| ++|+|+.
T Consensus       184 l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~  228 (252)
T 4e22_A          184 LQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTS  228 (252)
T ss_dssp             HHHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECSS
T ss_pred             HHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcC
Confidence            211  12345554443    33444566778888888 7888773

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.08  E-value=2.2e-10  Score=113.99  Aligned_cols=125  Identities=14%  Similarity=0.102  Sum_probs=74.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG  141 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~  141 (818)
                      +.+|+|+|++||||||+|+.|++.+|+.++++|++.+.......  +..-..+.+.+.   .|.....+...........
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~--~~~~~~~~~~~~---~g~~~~~~~~~~~l~~~~~   77 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPD--SQYGELIEKYIK---EGKIVPVEITISLLKREMD   77 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTT--STTHHHHHHHHH---TTCCCCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccC--ChHHHHHHHHHH---CCCcCCHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999998654322111  111112222221   2321111100110111111


Q ss_pred             ccccccCCccEEEEEecccchh---hhhc------CCCEEEEEEcCHHHHHHHHHHhcc
Q 003460          142 SKVIKGASSGVVIVDGTYALDA---RLRS------LLDIRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       142 ~~~~~~~~~~vVIvEG~~l~~~---~l~~------~~D~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                      ...........+|+||......   .+..      .+|..||+++|.++++.|...|+.
T Consensus        78 ~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~  136 (196)
T 1tev_A           78 QTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK  136 (196)
T ss_dssp             HHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             hhhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence            1011112345889999865432   1211      367899999999999999988874

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.06  E-value=3.1e-10  Score=117.74  Aligned_cols=165  Identities=16%  Similarity=0.210  Sum_probs=94.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc----cCCCCCcccHHHHHHHHHhhh-------------
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD----EGNDLDSIDFDALVQNLQDLT-------------  122 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~----~~~~~~~~d~~~l~~~L~~l~-------------  122 (818)
                      ..+.+|+|+|++||||||+++.|++.+|+.++++|++++...    ..+. ..-+.+.+...+..+.             
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~f~~~~~~~~~i   92 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQL-GVEEVEALLALLDQHPISFGRSETGDQLV   92 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTC-CTTCHHHHHHHHHHSCCEEEEETTTEEEE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCC-CcccHHHHHHHHHhccccccccCCccceE
Confidence            456789999999999999999999999999999999987422    1111 1122233333332211             


Q ss_pred             --cCCccccccchhhh---------hccc----cccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHH
Q 003460          123 --EGKDTLIPMFDYQQ---------KNRI----GSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKV  187 (818)
Q Consensus       123 --~~~~i~~p~~d~~~---------~~~~----~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri  187 (818)
                        .|+.+....-....         +..+    ............+|++|..... .+...+|++|||+++.+++++|++
T Consensus        93 ~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~-~~l~~~d~vi~L~a~~e~~~~R~~  171 (236)
T 1q3t_A           93 FVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGT-VVLPQAELKIFLVASVDERAERRY  171 (236)
T ss_dssp             EETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSS-SSGGGCSEEEEEECCHHHHHHHHH
T ss_pred             eECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcchh-hhccCCCEEEEEECCHHHHHHHHH
Confidence              11111000000000         0000    0000011123467789986532 234567999999999999999985


Q ss_pred             HhccCC--CcCHHHHH----HhhchhhhhccCCccccCc-EEEECC
Q 003460          188 QYDIGD--SCSLDSLI----DSIFPLFRKHIEPDLHHAQ-IRINNR  226 (818)
Q Consensus       188 ~Rd~~~--~~s~e~~~----~~~~p~~~~~Iep~~~~AD-iII~N~  226 (818)
                      .|....  ..+.+++.    +++.+...+.+.|....+| ++|+|+
T Consensus       172 ~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~  217 (236)
T 1q3t_A          172 KENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTT  217 (236)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECS
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCC
Confidence            331111  12333332    2356667667777777777 899887

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=98.98  E-value=9.6e-10  Score=110.78  Aligned_cols=125  Identities=17%  Similarity=0.144  Sum_probs=75.7

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhh----hcccCCCcccccHHHHHHHHHHHh-------------
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----KDFKYDDFSSLDLSLLSKNISDIR-------------  581 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~----~~~~~d~p~t~D~~ll~~~L~~L~-------------  581 (818)
                      +|+|+|++||||||+++.|++.+|+.+++.|++++....    ...+++++     +.+.+.+..+.             
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~   78 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDE-----EGLLALLEGLGVRLLAQAEGNRVL   78 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCH-----HHHHHHHHHTTCEEECCTTCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCH-----HHHHHHHHhCceeeeecCCCceEE
Confidence            899999999999999999999999999999999975321    11222222     22333333211             


Q ss_pred             -cCCceeccccccc---------ccccCCC--cce-eeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHh
Q 003460          582 -NGRRTKVPIFDLE---------TGARSGF--KEL-EVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQ  648 (818)
Q Consensus       582 -~g~~v~~P~yD~~---------~~~r~~~--~~~-~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~  648 (818)
                       .|+.+..+.....         .+.....  ... ....  ..+|+||.+++ ..+.+.+|++||++++.++++.|+..
T Consensus        79 ~~g~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~g~~~~-~~~~~~~d~~i~l~a~~e~~~~R~~~  155 (208)
T 3ake_A           79 ADGEDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAEGRDMG-TAVFPEAAHKFYLTASPEVRAWRRAR  155 (208)
T ss_dssp             ETTEECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEEESSCC-CCCCTTCSEEEEEECCHHHHHHHHHH
T ss_pred             ECCeeCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEEcccee-EEEecCCcEEEEEECCHHHHHHHHHh
Confidence             1111100000000         0000000  000 0011  57899999877 34556689999999999999999988


Q ss_pred             cCc
Q 003460          649 RDK  651 (818)
Q Consensus       649 Rd~  651 (818)
                      |+.
T Consensus       156 r~~  158 (208)
T 3ake_A          156 ERP  158 (208)
T ss_dssp             TSS
T ss_pred             hcc
Confidence            853

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=98.96  E-value=7.4e-10  Score=107.72  Aligned_cols=155  Identities=20%  Similarity=0.249  Sum_probs=84.1

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccccc
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA  597 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~  597 (818)
                      .+|+|+|++||||||+|+.| +.+|..++++|++++.......    +...+...+.+.+... .|.......    ...
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~   71 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEA----KPGERLMDFAKRLREI-YGDGVVARL----CVE   71 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC-------CCHHHHHHHHHHH-HCTTHHHHH----HHH
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcC----CChhHHHHHHHHHHhh-CCHHHHHHH----HHH
Confidence            47899999999999999999 8899999999998875321110    1111222222222111 011110000    000


Q ss_pred             cCCCcceeeecCCcEEEEEecccch--HhhhhcC---CEEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcchhh
Q 003460          598 RSGFKELEVSEDCGVIIFEGVYALH--PEIRKSL---DLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQ  672 (818)
Q Consensus       598 r~~~~~~~~~~~~~vvIvEG~~~~~--~~l~~~~---D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~  672 (818)
                           ... ....+.+|++|.....  ..+...+   +..||+++|.++++.|...|+....+.+.+.  +.........
T Consensus        72 -----~l~-~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~--~~~r~~~~~~  143 (179)
T 3lw7_A           72 -----ELG-TSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISE--LIRRDREELK  143 (179)
T ss_dssp             -----HHC-SCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHH--HHHHHHHHHH
T ss_pred             -----HHH-hcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHH--HHHHHHhhhc
Confidence                 000 1234689999973222  3344443   4899999999999999998874332233222  1111100001


Q ss_pred             hhccccCCcccEEEeCCC
Q 003460          673 QHIEPHLVHAHLKIRNDF  690 (818)
Q Consensus       673 ~~I~p~~~~ADivI~n~~  690 (818)
                      .-+.++...||++|+|+-
T Consensus       144 ~~~~~~~~~ad~vId~~~  161 (179)
T 3lw7_A          144 LGIGEVIAMADYIITNDS  161 (179)
T ss_dssp             HTHHHHHHTCSEEEECCS
T ss_pred             cChHhHHHhCCEEEECCC
Confidence            112334567999999763

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=98.96  E-value=1.1e-09  Score=111.83  Aligned_cols=155  Identities=14%  Similarity=0.239  Sum_probs=87.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceeccc----ccCCCCCcccHHHHHHHHHh---------------hh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV----DEGNDLDSIDFDALVQNLQD---------------LT  122 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~----~~~~~~~~~d~~~l~~~L~~---------------l~  122 (818)
                      +.+|+|+|++||||||+++.|++.+|+.++++|.+++..    ...+...  .   +.+....               +.
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~~~--~---i~~~~~~~~~~f~~~~~~g~~i~~   77 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTE--D---FAKLVDQTTLDLTYKADKGQCVIL   77 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTSCS--C---HHHHHHTCCEEEEECTTCCEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhhhH--H---HHHHHHhccccccccccccceEEe
Confidence            457999999999999999999999999999999997742    1111100  0   1111000               00


Q ss_pred             cCCcc-----------------ccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHH
Q 003460          123 EGKDT-----------------LIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLIS  185 (818)
Q Consensus       123 ~~~~i-----------------~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~R  185 (818)
                      .|...                 .+|..........  ..+  .....+|++|..+ ...+.+.+|++|||+++.+++++|
T Consensus        78 ~g~~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~--~~~--~~~~~~vi~g~~~-~~~~~~~~~~vi~l~a~~e~~~~R  152 (219)
T 2h92_A           78 DNEDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQ--KEL--AAEKGIVMDGRDI-GTVVLPDADLKVYMIASVEERAER  152 (219)
T ss_dssp             TTEECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHH--HHH--HTTCCEEEEESSC-CCCCCTTCSEEEEEECCHHHHHHH
T ss_pred             CCccchhhcCcHHHHHHHHHhccCHHHHHHHHHHH--HHh--ccCCcEEEEcCCc-cceecCCCCEEEEEECCHHHHHHH
Confidence            11100                 0111100000000  001  1223578888744 223445679999999999999999


Q ss_pred             HHHhcc--CCCcCHHHHHHhh----chhhhhccCCccccCc-EEEECC
Q 003460          186 KVQYDI--GDSCSLDSLIDSI----FPLFRKHIEPDLHHAQ-IRINNR  226 (818)
Q Consensus       186 ri~Rd~--~~~~s~e~~~~~~----~p~~~~~Iep~~~~AD-iII~N~  226 (818)
                      ++.+..  ....+.+++.+.+    .+...+.+.|....|| ++|+|+
T Consensus       153 ~~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~  200 (219)
T 2h92_A          153 RYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTT  200 (219)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECT
T ss_pred             HHHHHHhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECC
Confidence            865311  1112444444332    2444445556666677 999987

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.95  E-value=1.1e-09  Score=112.08  Aligned_cols=166  Identities=14%  Similarity=0.118  Sum_probs=82.7

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhh----hcccCCCcccccHHHHHHHHHHH------------
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----KDFKYDDFSSLDLSLLSKNISDI------------  580 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~----~~~~~d~p~t~D~~ll~~~L~~L------------  580 (818)
                      +.+|+|+|++||||||+++.|+..+|+.+++.|++++....    ...+.++     -..+.+....+            
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~   79 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVAS-----EDALVPLASHLDVRFVSTNGNLE   79 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTC-----HHHHHHHHHTCCEEEEEETTEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccC-----HHHHHHHHHhCceeeeccCCCce
Confidence            46899999999999999999999999999999999985321    1111111     01111111100            


Q ss_pred             --hcCCceeccccccc---------ccccCCC--cc-eeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHH
Q 003460          581 --RNGRRTKVPIFDLE---------TGARSGF--KE-LEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISR  646 (818)
Q Consensus       581 --~~g~~v~~P~yD~~---------~~~r~~~--~~-~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rr  646 (818)
                        ..|..+.-+..+..         .+.....  .. .........+++||..... .+...+|.+||++++.++++.|+
T Consensus        80 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~-~~~~~~d~~i~l~~~~e~~~~R~  158 (227)
T 1cke_A           80 VILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT-VVFPDAPVKIFLDASSEERAHRR  158 (227)
T ss_dssp             EEETTEECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC-CCCTTCSEEEEEECCHHHHHHHH
T ss_pred             EEECCeeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc-eEecCCCEEEEEeCCHHHHHHHH
Confidence              00110000000000         0000000  00 0001224678999985443 33456899999999999999997


Q ss_pred             HhcCccccCcc--cch--hhHHHhhcchhhhhccccCCc-ccEEEeCC
Q 003460          647 VQRDKSRMGCF--MSQ--NDIMMTVFPMFQQHIEPHLVH-AHLKIRND  689 (818)
Q Consensus       647 i~Rd~~~rg~~--~~~--~~~~~~v~p~~~~~I~p~~~~-ADivI~n~  689 (818)
                      ..+ ...+|..  .+.  .++...+.+.+..+++|.... ++++|+++
T Consensus       159 ~~~-l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~  205 (227)
T 1cke_A          159 MLQ-LQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDST  205 (227)
T ss_dssp             HHH-HHHHTCCCCHHHHHHHHC-------------CCCCTTCEEEETT
T ss_pred             HHH-HHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCC
Confidence            643 2234542  221  122222233455555665443 45888876

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=98.93  E-value=2e-09  Score=106.77  Aligned_cols=120  Identities=13%  Similarity=0.086  Sum_probs=72.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI  140 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~  140 (818)
                      .+.+|+|+|++||||||+|+.|++.+|+.++++|++.+.....+.+   ....+.+.+.   .+...  +  +.......
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~---~~~~i~~~~~---~g~~~--~--~~~~~~~l   74 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSK---DGEMIATMIK---NGEIV--P--SIVTVKLL   74 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCT---THHHHHHHHH---TTCCC--C--HHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCH---HHHHHHHHHH---CCCCC--C--HHHHHHHH
Confidence            3578999999999999999999999999999999976533211111   1122222221   12110  0  00001111


Q ss_pred             cccccccCCccEEEEEecccch---hhh----hc--CCCEEEEEEcCHHHHHHHHHHhcc
Q 003460          141 GSKVIKGASSGVVIVDGTYALD---ARL----RS--LLDIRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       141 ~~~~~~~~~~~vVIvEG~~l~~---~~l----~~--~~D~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                      .. .+.......+|+||.....   ..+    ..  .+|++|||++|.+++++|...|+.
T Consensus        75 ~~-~i~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~  133 (194)
T 1qf9_A           75 KN-AIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE  133 (194)
T ss_dssp             HH-HHHTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT
T ss_pred             HH-HHHhcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccc
Confidence            00 0111134578999854322   112    22  568999999999999999988864

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.92  E-value=1.8e-09  Score=105.46  Aligned_cols=40  Identities=23%  Similarity=0.255  Sum_probs=34.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG   99 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~   99 (818)
                      ..+.+|+|+|++||||||+|+.|++.||++++++|.+...
T Consensus         5 ~~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~   44 (168)
T 1zuh_A            5 HHMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISE   44 (168)
T ss_dssp             ---CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred             cccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence            4577899999999999999999999999999999998664

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=98.92  E-value=1.6e-09  Score=108.42  Aligned_cols=121  Identities=14%  Similarity=0.027  Sum_probs=73.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG  141 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~  141 (818)
                      +.+|+|+|++||||||+|+.|++.+|+.++++|++++.....+.+   ....+.+.+.   .|...............+.
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~---~~~~i~~~~~---~g~~~~~~~~~~~~~~~i~   85 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESE---RSKLIRDIME---RGDLVPSGIVLELLKEAMV   85 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCH---HHHHHHHHHH---TTCCCCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCH---HHHHHHHHHH---cCCcCCHHHHHHHHHHHHh
Confidence            568999999999999999999999999999999986633211110   0011112221   2222110000000111110


Q ss_pred             ccccccCCccEEEEEecccch---hhhhc---CCCEEEEEEcCHHHHHHHHHHhcc
Q 003460          142 SKVIKGASSGVVIVDGTYALD---ARLRS---LLDIRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       142 ~~~~~~~~~~vVIvEG~~l~~---~~l~~---~~D~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                      .   .......+|+||.....   ..+..   .+|++|||++|.+++.+|...|+.
T Consensus        86 ~---~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~  138 (199)
T 2bwj_A           86 A---SLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSR  138 (199)
T ss_dssp             H---HTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCC
T ss_pred             c---ccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCC
Confidence            0   01234579999875432   12222   579999999999999999988864

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=98.91  E-value=3.5e-09  Score=103.13  Aligned_cols=147  Identities=14%  Similarity=0.170  Sum_probs=81.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG  141 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~  141 (818)
                      |.+|+|+|++||||||+|+.|++.+|+.+++.|.+.....        ....+.+....+..+..+....+...   .. 
T Consensus         1 M~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~--------~~~~~~~~~~~l~~~~~vi~dr~~~~---~~-   68 (173)
T 3kb2_A            1 MTLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS--------GNEKLFEHFNKLADEDNVIIDRFVYS---NL-   68 (173)
T ss_dssp             -CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT--------CHHHHHHHHHHHTTCCSEEEESCHHH---HH-
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh--------HHHHHHHHHHHHHhCCCeEEeeeecc---hH-
Confidence            3579999999999999999999999999999998865332        12223233334444433322111110   00 


Q ss_pred             ccccccC--CccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhhccCCccccC
Q 003460          142 SKVIKGA--SSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHA  219 (818)
Q Consensus       142 ~~~~~~~--~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~~Iep~~~~A  219 (818)
                        .....  .... +...............|..||++++.++..+|...|.. .... .+..+.+...|+.....+ ..+
T Consensus        69 --v~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r-~~~~-~~~~~~~~~~~~~~~~~~-~~~  142 (173)
T 3kb2_A           69 --VYAKKFKDYSI-LTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGD-EYIE-GKDIDSILELYREVMSNA-GLH  142 (173)
T ss_dssp             --HHTTTBTTCCC-CCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSC-SCCC-HHHHHHHHHHHHHHHHTC-SSC
T ss_pred             --HHHHHHHHhhH-hhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCC-cchh-hhHHHHHHHHHHHHHhhc-CCC
Confidence              00000  0000 00000000011112468999999999999999888732 1122 234444545555433333 368


Q ss_pred             cEEEECC
Q 003460          220 QIRINNR  226 (818)
Q Consensus       220 DiII~N~  226 (818)
                      +++|+++
T Consensus       143 ~~~id~~  149 (173)
T 3kb2_A          143 TYSWDTG  149 (173)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            8999887

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.90  E-value=3e-10  Score=112.67  Aligned_cols=144  Identities=13%  Similarity=0.112  Sum_probs=77.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccc
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS  142 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~  142 (818)
                      .+|+|+|++||||||+|+.|++.+|+.++++|++++......      ...+   +..  .|..    .+......... 
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g~~------~~~~---~~~--~g~~----~~~~~~~~~~~-   66 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRS------IADI---FAT--DGEQ----EFRRIEEDVVR-   66 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSSC------HHHH---HHH--HCHH----HHHHHHHHHHH-
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcCCC------HHHH---HHH--hChH----HHHHHHHHHHH-
Confidence            369999999999999999999999999999999866432111      0000   000  0000    00000000000 


Q ss_pred             cccccCCccEEEEEeccc-chhhhhcC--CCEEEEEEcCHHHHHHHHHHhccCC---CcCHHHHHHhhchhhhhccCCcc
Q 003460          143 KVIKGASSGVVIVDGTYA-LDARLRSL--LDIRVAVVGGVHFSLISKVQYDIGD---SCSLDSLIDSIFPLFRKHIEPDL  216 (818)
Q Consensus       143 ~~~~~~~~~vVIvEG~~l-~~~~l~~~--~D~~I~Vda~~e~~l~Rri~Rd~~~---~~s~e~~~~~~~p~~~~~Iep~~  216 (818)
                      ....  ....|+..|... +.+..++.  ++..|||++|.+++++|...|+...   ..+..+.++.++....   ..+.
T Consensus        67 ~~~~--~~~~vi~~g~~~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~---~~~~  141 (184)
T 2iyv_A           67 AALA--DHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRA---PLYR  141 (184)
T ss_dssp             HHHH--HCCSEEECCTTGGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHH---HHHH
T ss_pred             HHHh--cCCeEEecCCcEEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHH---HHHh
Confidence            0001  112344545433 22222211  6899999999999999887765321   1233333433321111   1123


Q ss_pred             ccCcEEEECCC
Q 003460          217 HHAQIRINNRF  227 (818)
Q Consensus       217 ~~ADiII~N~~  227 (818)
                      ..+|++|+|+.
T Consensus       142 ~~~~~~Idt~~  152 (184)
T 2iyv_A          142 RVATMRVDTNR  152 (184)
T ss_dssp             HHCSEEEECSS
T ss_pred             ccCCEEEECCC
Confidence            56899999883

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=98.89  E-value=2.4e-09  Score=111.09  Aligned_cols=169  Identities=15%  Similarity=0.199  Sum_probs=93.3

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhh--cccCCCcccccHHHHHHHHHHHh-------cCCce
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK--DFKYDDFSSLDLSLLSKNISDIR-------NGRRT  586 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~--~~~~d~p~t~D~~ll~~~L~~L~-------~g~~v  586 (818)
                      .|++|+|.||+||||||+++.|++.+|..+++.|++|+.....  ..+.+   .-|.+.+.+.+..+.       .+..+
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~---~~d~~~~~~~~~~~~~~~~~~~~~~~v   84 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGAD---LTDPAAIEKAAADAEIGVGSDPDVDAA   84 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCC---TTCHHHHHHHHHTCCEEECCCTTSCCE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCC---chhhHHHHHHHHhCCEEEeecCCCcEE
Confidence            5789999999999999999999999999999999999863311  11111   123333444333221       00111


Q ss_pred             ecccccccccccCCC-------------------c-ceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHH
Q 003460          587 KVPIFDLETGARSGF-------------------K-ELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISR  646 (818)
Q Consensus       587 ~~P~yD~~~~~r~~~-------------------~-~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rr  646 (818)
                      .+.--|-...-|.+.                   . .........-+|+||-..+.--+.+ .+++||++++.+.|..|+
T Consensus        85 ~l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~V~pd-a~lkifl~A~~e~Ra~Rr  163 (233)
T 3r20_A           85 FLAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTVVLPD-ADVKIFLTASAEERARRR  163 (233)
T ss_dssp             EETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCCCCTT-CSEEEEEECCHHHHHHHH
T ss_pred             EECCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeEEcCC-CCEEEEEECCHHHHHHHH
Confidence            111101100001000                   0 0000111156888998665422222 579999999999999999


Q ss_pred             HhcCccccCcccc--h--hhHHHhhcchhhhhccccCCccc-EEEeCC
Q 003460          647 VQRDKSRMGCFMS--Q--NDIMMTVFPMFQQHIEPHLVHAH-LKIRND  689 (818)
Q Consensus       647 i~Rd~~~rg~~~~--~--~~~~~~v~p~~~~~I~p~~~~AD-ivI~n~  689 (818)
                      ..+-. ..|....  .  .+....-......++.|.+..+| ++|+++
T Consensus       164 ~~~l~-~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs  210 (233)
T 3r20_A          164 NAQNV-ANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTS  210 (233)
T ss_dssp             HHHHH-HTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECT
T ss_pred             HHHHH-hccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECC
Confidence            86432 2233322  2  12222222233456778776666 787765

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.88  E-value=1.2e-08  Score=100.11  Aligned_cols=142  Identities=13%  Similarity=0.104  Sum_probs=80.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceeccc--c--cCCCCCcccHHHHHHHHHhhhcCCccccccchhh
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV--D--EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ  135 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~--~--~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~  135 (818)
                      ..+.+|+|+|++||||||+++.|+..+|..+++.|++....  .  ..+.  .+........+..+           .  
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~-----------~--   70 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGE--PLNDDDRKPWLQAL-----------N--   70 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTC--CCCHHHHHHHHHHH-----------H--
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCc--CCCccccccHHHHH-----------H--
Confidence            34578999999999999999999999999999999975320  0  0000  01101111111100           0  


Q ss_pred             hhccccccccccCCccEEEEEecccch---hhhhcCC-C-EEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhh
Q 003460          136 QKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSLL-D-IRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRK  210 (818)
Q Consensus       136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~~-D-~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~  210 (818)
                        ... .....  ....+|++..+...   ..+.... | ..|||++|.+++++|...|+... .. ...++.+...++ 
T Consensus        71 --~~~-~~~~~--~~~~~vi~~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~-~~-~~~~~~~~~~~~-  142 (175)
T 1knq_A           71 --DAA-FAMQR--TNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHF-FK-TQMLVTQFETLQ-  142 (175)
T ss_dssp             --HHH-HHHHH--HCSEEEEECCCCSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCC-CC-HHHHHHHHHHCC-
T ss_pred             --HHH-HHHHh--cCCcEEEEeCchHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhccCCC-Cc-hHHHHHHHHhhh-
Confidence              000 00000  12246676544433   2344433 6 78999999999999988876322 12 233333322221 


Q ss_pred             ccCC-ccccCcEEEECC
Q 003460          211 HIEP-DLHHAQIRINNR  226 (818)
Q Consensus       211 ~Iep-~~~~ADiII~N~  226 (818)
                        .+ +...||++|+|+
T Consensus       143 --~~~~~~~~~~~Id~~  157 (175)
T 1knq_A          143 --EPGADETDVLVVDID  157 (175)
T ss_dssp             --CCCTTCTTEEEEECS
T ss_pred             --CcccCCCCeEEEeCC
Confidence              23 456789999988

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=98.88  E-value=8.3e-09  Score=103.98  Aligned_cols=141  Identities=14%  Similarity=0.128  Sum_probs=82.6

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET  595 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~  595 (818)
                      .+.+|+|+|++||||||+|+.|++.+|..+++.|+++..........+.+  +........+..+.+.  +         
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~--~~~~~~~~~~~~l~~~--~---------   83 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIP--LTDDDRWPWLAAIGER--L---------   83 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCC--CCHHHHHHHHHHHHHH--H---------
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCC--CCchhhHHHHHHHHHH--H---------
Confidence            46789999999999999999999999999999999986522111111110  1111111122221110  0         


Q ss_pred             cccCCCcceeeecCCcEEEEEecccch---HhhhhcC---CEEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcc
Q 003460          596 GARSGFKELEVSEDCGVIIFEGVYALH---PEIRKSL---DLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFP  669 (818)
Q Consensus       596 ~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~l~~~~---D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p  669 (818)
                                  .....+|+++.....   ..+....   +..||++++.++++.|...|+.....   .  ....   .
T Consensus        84 ------------~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~---~--~~~~---~  143 (202)
T 3t61_A           84 ------------ASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMP---S--SLLQ---T  143 (202)
T ss_dssp             ------------TSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCC---H--HHHH---H
T ss_pred             ------------hcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCC---H--HHHH---H
Confidence                        112345666665432   2344433   58999999999999999887632111   1  1111   1


Q ss_pred             hhhhhccccCCcccEEEeCC
Q 003460          670 MFQQHIEPHLVHAHLKIRND  689 (818)
Q Consensus       670 ~~~~~I~p~~~~ADivI~n~  689 (818)
                      .+..+-.+....++++|+++
T Consensus       144 ~~~~~~~~~~~~~~~~Id~~  163 (202)
T 3t61_A          144 QLETLEDPRGEVRTVAVDVA  163 (202)
T ss_dssp             HHHHCCCCTTSTTEEEEESS
T ss_pred             HHHhcCCCCCCCCeEEEeCC
Confidence            22233234556689999987

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.87  E-value=3.5e-09  Score=106.74  Aligned_cols=149  Identities=19%  Similarity=0.126  Sum_probs=78.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR  139 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~  139 (818)
                      .++.+|+|+|++||||||+++.|++.+|..++++|++........      ...+...-     +.    +.+.... ..
T Consensus        23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g~~------i~~~~~~~-----~~----~~~~~~e-~~   86 (199)
T 3vaa_A           23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKT------VGELFTER-----GE----AGFRELE-RN   86 (199)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSC------HHHHHHHH-----HH----HHHHHHH-HH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhCCc------HHHHHHhc-----Ch----HHHHHHH-HH
Confidence            345689999999999999999999999999999999754322111      00000000     00    0000000 00


Q ss_pred             ccccccccCCccEEEEEecccch-hh---hhcCCCEEEEEEcCHHHHHHHHH-HhccC---CCcCHHHHHHhhchhhhhc
Q 003460          140 IGSKVIKGASSGVVIVDGTYALD-AR---LRSLLDIRVAVVGGVHFSLISKV-QYDIG---DSCSLDSLIDSIFPLFRKH  211 (818)
Q Consensus       140 ~~~~~~~~~~~~vVIvEG~~l~~-~~---l~~~~D~~I~Vda~~e~~l~Rri-~Rd~~---~~~s~e~~~~~~~p~~~~~  211 (818)
                      .....  .....+||..|..... ..   .....+.+||+++|.++..+|.. .|...   ...+.+++.+.+...+...
T Consensus        87 ~l~~l--~~~~~~vi~~ggg~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r  164 (199)
T 3vaa_A           87 MLHEV--AEFENVVISTGGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKR  164 (199)
T ss_dssp             HHHHH--TTCSSEEEECCTTGGGSTTHHHHHHHHSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHH--hhcCCcEEECCCcEEccHHHHHHHHcCCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHH
Confidence            00000  1123355554543332 21   11225899999999999988876 33211   1234433333332333322


Q ss_pred             cCCccccCcEEEECCC
Q 003460          212 IEPDLHHAQIRINNRF  227 (818)
Q Consensus       212 Iep~~~~ADiII~N~~  227 (818)
                      ...+.. ||++|+++.
T Consensus       165 ~~~y~~-ad~~Idt~~  179 (199)
T 3vaa_A          165 APFYTQ-AQYIFNADE  179 (199)
T ss_dssp             HHHHTT-SSEEEECCC
T ss_pred             HHHHhh-CCEEEECCC
Confidence            111223 999999884

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=98.87  E-value=3.8e-09  Score=104.97  Aligned_cols=126  Identities=16%  Similarity=0.176  Sum_probs=73.7

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET  595 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~  595 (818)
                      .|.+|+|.|++||||||+|+.|++.+|..++++|++.+.....      +++.--..+.+.+   ..|............
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~------~~~~~~~~~~~~~---~~g~~~~~~~~~~~l   72 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKN------PDSQYGELIEKYI---KEGKIVPVEITISLL   72 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHC------TTSTTHHHHHHHH---HTTCCCCHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhc------cCChHHHHHHHHH---HCCCcCCHHHHHHHH
Confidence            3788999999999999999999999999999999997642110      0010011112211   123221111000000


Q ss_pred             cccCCCcceeeecCCcEEEEEecccchH---hhhh------cCCEEEEEEcChhHHHHHHHhcCc
Q 003460          596 GARSGFKELEVSEDCGVIIFEGVYALHP---EIRK------SLDLWIAVVGGVHSHLISRVQRDK  651 (818)
Q Consensus       596 ~~r~~~~~~~~~~~~~vvIvEG~~~~~~---~l~~------~~D~~I~v~~~~d~rl~Rri~Rd~  651 (818)
                      ..... ...........+|+||......   .+..      ..|..||+++|.++++.|...|+.
T Consensus        73 ~~~~~-~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~  136 (196)
T 1tev_A           73 KREMD-QTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK  136 (196)
T ss_dssp             HHHHH-HHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             HHHHH-hhhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence            00000 0000112346889999876432   2222      367899999999999999988863

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=98.87  E-value=6.5e-09  Score=107.70  Aligned_cols=169  Identities=14%  Similarity=0.160  Sum_probs=94.6

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhh----hcccCCCcccccHHHHHHHHHHHhc-------
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----KDFKYDDFSSLDLSLLSKNISDIRN-------  582 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~----~~~~~d~p~t~D~~ll~~~L~~L~~-------  582 (818)
                      ...+.+|+|+|++||||||+++.|+..+|+.+++.|++++....    ....+++     .+.+.+.+..+..       
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~f~~~~~   87 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEE-----VEALLALLDQHPISFGRSET   87 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTC-----HHHHHHHHHHSCCEEEEETT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCccc-----HHHHHHHHHhccccccccCC
Confidence            34678999999999999999999999999999999999975221    1112222     2223333322110       


Q ss_pred             -CCceeccc--ccccccc--------------cC--CC-cceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHH
Q 003460          583 -GRRTKVPI--FDLETGA--------------RS--GF-KELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSH  642 (818)
Q Consensus       583 -g~~v~~P~--yD~~~~~--------------r~--~~-~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~r  642 (818)
                       |..+..--  ++.....              ..  .. ...........+|+||.....+ +...+|++||++++.+++
T Consensus        88 ~~~~i~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~~-~l~~~d~vi~L~a~~e~~  166 (236)
T 1q3t_A           88 GDQLVFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGTV-VLPQAELKIFLVASVDER  166 (236)
T ss_dssp             TEEEEEETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSSS-SGGGCSEEEEEECCHHHH
T ss_pred             ccceEeECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcchhh-hccCCCEEEEEECCHHHH
Confidence             01110000  0000000              00  00 0000112335678899876532 334579999999999999


Q ss_pred             HHHHHhcCccccCc--ccch--hhHHHhhcchhhhhccccCCccc-EEEeCC
Q 003460          643 LISRVQRDKSRMGC--FMSQ--NDIMMTVFPMFQQHIEPHLVHAH-LKIRND  689 (818)
Q Consensus       643 l~Rri~Rd~~~rg~--~~~~--~~~~~~v~p~~~~~I~p~~~~AD-ivI~n~  689 (818)
                      +.|++.|. ..||.  +.+.  ..+.....+....++.|....+| ++|+|+
T Consensus       167 ~~R~~~~~-~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~  217 (236)
T 1q3t_A          167 AERRYKEN-IAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTT  217 (236)
T ss_dssp             HHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECS
T ss_pred             HHHHHHHH-HhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCC
Confidence            99986553 23343  2222  12322244555556677666666 888876

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=98.85  E-value=2.7e-09  Score=107.52  Aligned_cols=123  Identities=15%  Similarity=0.068  Sum_probs=71.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceeccccc-CCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE-GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN  138 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~-~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~  138 (818)
                      .++.+|+|+|++||||||+|+.|++.+|..++++|++++.... .+..  + -+.+.+.+.   .|..............
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~--~-~~~i~~~~~---~g~~~~~~~~~~~l~~   86 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQ--Y-GELIKNCIK---EGQIVPQEITLALLRN   86 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCS--C-HHHHHHHHH---TTCCCCHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCH--H-HHHHHHHHH---cCCcCCHHHHHHHHHH
Confidence            4578999999999999999999999999999999998664321 1111  1 112222221   2221100000000000


Q ss_pred             cccccccccCCccEEEEEecccch------hhhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          139 RIGSKVIKGASSGVVIVDGTYALD------ARLRSLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       139 ~~~~~~~~~~~~~vVIvEG~~l~~------~~l~~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                      .+. .... .....+|++|.....      .......|++|||++|.+++++|...|+
T Consensus        87 ~i~-~~l~-~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~  142 (203)
T 1ukz_A           87 AIS-DNVK-ANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERG  142 (203)
T ss_dssp             HHH-HHHH-TTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHH
T ss_pred             HHH-hhhc-cCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc
Confidence            010 0111 112467788863211      1122337999999999999999998886

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=98.84  E-value=2.2e-09  Score=104.92  Aligned_cols=145  Identities=11%  Similarity=0.084  Sum_probs=77.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG  141 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~  141 (818)
                      +.+|+|+|++||||||+|+.|++.+|+.++++|++++.....  +    ...+....     +..    .+..... ...
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~g~--~----~~~~~~~~-----~~~----~~~~~~~-~~~   65 (173)
T 1e6c_A            2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGM--T----VADVVAAE-----GWP----GFRRRES-EAL   65 (173)
T ss_dssp             CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHCS--C----HHHHHHHH-----HHH----HHHHHHH-HHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHhCC--C----HHHHHHHc-----CHH----HHHHHHH-HHH
Confidence            357999999999999999999999999999999986543111  0    11110000     000    0000000 000


Q ss_pred             ccccccCCccEEEEEeccc-chhhhh---cCCCEEEEEEcCHHHHHHHHH--Hhcc-CCCcCHHHHHHhhchhhhhccCC
Q 003460          142 SKVIKGASSGVVIVDGTYA-LDARLR---SLLDIRVAVVGGVHFSLISKV--QYDI-GDSCSLDSLIDSIFPLFRKHIEP  214 (818)
Q Consensus       142 ~~~~~~~~~~vVIvEG~~l-~~~~l~---~~~D~~I~Vda~~e~~l~Rri--~Rd~-~~~~s~e~~~~~~~p~~~~~Iep  214 (818)
                      .. +.  ...+||..|... +.+...   ...|..|||++|.+++++|..  .|.. ......+...+.+...+......
T Consensus        66 ~~-l~--~~~~vi~~g~~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~  142 (173)
T 1e6c_A           66 QA-VA--TPNRVVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREAL  142 (173)
T ss_dssp             HH-HC--CSSEEEECCTTGGGSHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HH-hh--cCCeEEECCCcEEeCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHH
Confidence            00 11  234566655322 222111   125899999999999999887  6621 11122222222222222221111


Q ss_pred             ccccCcEEEECC
Q 003460          215 DLHHAQIRINNR  226 (818)
Q Consensus       215 ~~~~ADiII~N~  226 (818)
                      +.. +|++|+|+
T Consensus       143 ~~~-~~~~Id~~  153 (173)
T 1e6c_A          143 YQD-VAHYVVDA  153 (173)
T ss_dssp             HHH-HCSEEEET
T ss_pred             HHh-CcEEEECC
Confidence            223 89999987

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.83  E-value=1.6e-09  Score=107.46  Aligned_cols=38  Identities=24%  Similarity=0.277  Sum_probs=34.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG   99 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~   99 (818)
                      +..|.|+|++||||||+|+.|++.+|+.++++|++...
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~   42 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEK   42 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence            45789999999999999999999999999999998653

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=98.83  E-value=1.3e-08  Score=106.24  Aligned_cols=129  Identities=14%  Similarity=-0.083  Sum_probs=77.7

Q ss_pred             HHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCcccccc
Q 003460           52 IQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPM  131 (818)
Q Consensus        52 i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~  131 (818)
                      .......+.++++|+|+|++||||||+|+.|++.+|+.++++|++.+.....+.+   ....+.+.+   ..+..+....
T Consensus        19 ~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~---~g~~i~~~~---~~g~~~~~~~   92 (243)
T 3tlx_A           19 KRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTE---LGLKIKNII---NEGKLVDDQM   92 (243)
T ss_dssp             HHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSH---HHHHHHHHH---HTTCCCCHHH
T ss_pred             HHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccch---HHHHHHHHH---hcCCCCcHHH
Confidence            3333445567899999999999999999999999999999999987653322111   111112211   2222111111


Q ss_pred             chhhhhccccccccccCCccEEEEEecccch---hhhh-------cCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          132 FDYQQKNRIGSKVIKGASSGVVIVDGTYALD---ARLR-------SLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       132 ~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~-------~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                      .........    ........+|+||.....   ..+.       ...|.+|++++|.++.++|...|.
T Consensus        93 ~~~~~~~~l----~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~  157 (243)
T 3tlx_A           93 VLSLVDEKL----KTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRL  157 (243)
T ss_dssp             HHHHHHHHT----TSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             HHHHHHHHH----hcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCC
Confidence            111111111    111223468899943222   1111       347999999999999999999886

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.82  E-value=6.6e-09  Score=109.06  Aligned_cols=172  Identities=13%  Similarity=0.140  Sum_probs=83.8

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhh--cccCCCcccccHHHHHHHHHHHh--cCC--ceecc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK--DFKYDDFSSLDLSLLSKNISDIR--NGR--RTKVP  589 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~--~~~~d~p~t~D~~ll~~~L~~L~--~g~--~v~~P  589 (818)
                      ...+|+|+||+||||||+++.|++.||...++.|.+|+.....  ..+.+..+......+.+.+.-..  .+.  .+.+.
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  105 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVILE  105 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEET
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEEC
Confidence            4568999999999999999999999999999999998542110  00111111111222211110000  000  00000


Q ss_pred             cccccccccCC-----------C-------cce-eeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcC
Q 003460          590 IFDLETGARSG-----------F-------KEL-EVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       590 ~yD~~~~~r~~-----------~-------~~~-~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                      ..+....-+..           .       ..+ .......-+|+||-....- +.+..|++||++++.+.|..|+..+.
T Consensus       106 ~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~-v~~~~~~~ifl~A~~e~r~~R~~~~l  184 (252)
T 4e22_A          106 GEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTI-VFPDAPVKIFLDASSQERAHRRMLQL  184 (252)
T ss_dssp             TEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCC-CSTTCSEEEEEECCHHHHHHHHHHHH
T ss_pred             CeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceecee-ecCCCCEEEEEECCHHHHHHHHHHHH
Confidence            00000000000           0       000 0011234578899766532 22336899999999999999987632


Q ss_pred             ccccCcccch----hhHHHhhcchhhhhccccCCccc-EEEeCC
Q 003460          651 KSRMGCFMSQ----NDIMMTVFPMFQQHIEPHLVHAH-LKIRND  689 (818)
Q Consensus       651 ~~~rg~~~~~----~~~~~~v~p~~~~~I~p~~~~AD-ivI~n~  689 (818)
                       ..+|.....    .++...........+.|....|| ++|+++
T Consensus       185 -~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts  227 (252)
T 4e22_A          185 -QERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDST  227 (252)
T ss_dssp             -HHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECS
T ss_pred             -HhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECc
Confidence             122222221    11112222233455678877888 888876

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.81  E-value=1.3e-08  Score=102.65  Aligned_cols=141  Identities=18%  Similarity=0.076  Sum_probs=78.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceeccc-----ccCCCCCcccHHHHHHHHHhhhcCCccccccchhh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV-----DEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ  135 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~-----~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~  135 (818)
                      ...+|+|+|++||||||+++.|+..+|..+++.|++....     .....+.   .......+..+           ...
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~-----------~~~   93 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLT---DEDRWPWLRSL-----------AEW   93 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCCCC---HHHHHHHHHHH-----------HHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCCCC---CcccccHHHHH-----------HHH
Confidence            4578999999999999999999999999999999975321     0011111   11111111100           000


Q ss_pred             hhccccccccccCCccEEEEEecccchh---hhhcCC--CEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhh
Q 003460          136 QKNRIGSKVIKGASSGVVIVDGTYALDA---RLRSLL--DIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRK  210 (818)
Q Consensus       136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~~---~l~~~~--D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~  210 (818)
                          . ..... . ...+|+++..+...   .+....  ...||++++.+++++|...|..... . .+.++.   .+..
T Consensus        94 ----~-~~~~~-~-g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~-~-~~~l~~---~~~~  161 (200)
T 4eun_A           94 ----M-DARAD-A-GVSTIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFM-P-ASLLQS---QLAT  161 (200)
T ss_dssp             ----H-HHHHH-T-TCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSS-C-GGGHHH---HHHH
T ss_pred             ----H-HHHHh-c-CCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCC-C-HHHHHH---HHHH
Confidence                0 00001 1 12355565544332   222221  3679999999999888877764322 1 122222   2333


Q ss_pred             ccCCccccCcEEEECCC
Q 003460          211 HIEPDLHHAQIRINNRF  227 (818)
Q Consensus       211 ~Iep~~~~ADiII~N~~  227 (818)
                      +..++...|+++|+|+.
T Consensus       162 ~~~~~~~~~~~~Id~~~  178 (200)
T 4eun_A          162 LEALEPDESGIVLDLRQ  178 (200)
T ss_dssp             CCCCCTTSCEEEEETTS
T ss_pred             hCCCCCCCCeEEEECCC
Confidence            33345556999999973

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=98.80  E-value=1.1e-09  Score=106.76  Aligned_cols=108  Identities=13%  Similarity=0.091  Sum_probs=63.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK  143 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~  143 (818)
                      +|+|+|++||||||+|+.|++.+|+.++++|++.......      ....+.   ..  .+..    .++... ..... 
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g~------~~~~~~---~~--~~~~----~~~~~~-~~~l~-   64 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREGL------SIPQIF---EK--KGEA----YFRKLE-FEVLK-   64 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTS------CHHHHH---HH--SCHH----HHHHHH-HHHHH-
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcCC------CHHHHH---HH--hChH----HHHHHH-HHHHH-
Confidence            6999999999999999999999999999999986543211      000000   00  0000    000000 00000 


Q ss_pred             ccccCCccEEEEEec--ccchh---hhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          144 VIKGASSGVVIVDGT--YALDA---RLRSLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       144 ~~~~~~~~vVIvEG~--~l~~~---~l~~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                      .+. ....+||.+|.  .+...   .+. .+|..|||++|.+.+++|...|.
T Consensus        65 ~l~-~~~~~Vi~~g~~~~~~~~~~~~l~-~~~~~i~l~~~~e~~~~R~~~r~  114 (168)
T 2pt5_A           65 DLS-EKENVVISTGGGLGANEEALNFMK-SRGTTVFIDIPFEVFLERCKDSK  114 (168)
T ss_dssp             HHT-TSSSEEEECCHHHHTCHHHHHHHH-TTSEEEEEECCHHHHHHHCBCTT
T ss_pred             HHh-ccCCeEEECCCCEeCCHHHHHHHH-cCCEEEEEECCHHHHHHHHhCCC
Confidence            011 12346666443  33322   222 27999999999999998877653

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=98.78  E-value=1.2e-08  Score=102.70  Aligned_cols=155  Identities=18%  Similarity=0.142  Sum_probs=82.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR  139 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~  139 (818)
                      ..+++|+|+|++||||||+|+.|++.+|..++++|++.+.....+.+   ....+.+.+.   .+..............+
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~---~g~~i~~~~~---~g~~~~~~~~~~~~~~~   91 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTK---LGVEAKRYLD---AGDLVPSDLTNELVDDR   91 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCH---HHHHHHHHHH---HTCCCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCCh---HHHHHHHHHH---cCCcccHHHHHHHHHHH
Confidence            45678999999999999999999999999999999976532111110   0011111111   12111000000001111


Q ss_pred             ccccccccCCccEEEEEecccch-------hhhh---cCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhh
Q 003460          140 IGSKVIKGASSGVVIVDGTYALD-------ARLR---SLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFR  209 (818)
Q Consensus       140 ~~~~~~~~~~~~vVIvEG~~l~~-------~~l~---~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~  209 (818)
                      ...    ......+|++|...-.       ..+.   ..+|..||+++|.+++++|...|.... .+.+.+.+++ ..|.
T Consensus        92 ~~~----~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~-~~~e~~~~r~-~~~~  165 (201)
T 2cdn_A           92 LNN----PDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRAD-DTDDVILNRM-KVYR  165 (201)
T ss_dssp             TTS----GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTT-CSHHHHHHHH-HHHH
T ss_pred             Hhc----ccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCC-CCHHHHHHHH-HHHH
Confidence            100    0112347889853211       1122   247899999999999999988885321 2333333222 1111


Q ss_pred             hccCC---ccccCcEEEECC
Q 003460          210 KHIEP---DLHHAQIRINNR  226 (818)
Q Consensus       210 ~~Iep---~~~~ADiII~N~  226 (818)
                      ....|   ....++++|+|+
T Consensus       166 ~~~~~~~~~~~~~~~~Id~~  185 (201)
T 2cdn_A          166 DETAPLLEYYRDQLKTVDAV  185 (201)
T ss_dssp             HHTTTHHHHTTTTEEEEECC
T ss_pred             HhhHHHHHHhcCcEEEEeCC
Confidence            11111   014578888886

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=98.76  E-value=1.8e-08  Score=99.81  Aligned_cols=121  Identities=15%  Similarity=0.158  Sum_probs=70.8

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE  594 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~  594 (818)
                      ..+.+|+|+|++||||||+|+.|++.+|..++++|++.+.....    +.+   ....+.+.+   ..|....    +..
T Consensus         4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~----~~~---~~~~i~~~~---~~g~~~~----~~~   69 (194)
T 1qf9_A            4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQS----GSK---DGEMIATMI---KNGEIVP----SIV   69 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHT----TCT---THHHHHHHH---HTTCCCC----HHH
T ss_pred             CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhc----CCH---HHHHHHHHH---HCCCCCC----HHH
Confidence            35679999999999999999999999999999999987642110    000   011111111   1121100    000


Q ss_pred             ccccCCCcceeeecCCcEEEEEecccch---Hhh----hh--cCCEEEEEEcChhHHHHHHHhcCc
Q 003460          595 TGARSGFKELEVSEDCGVIIFEGVYALH---PEI----RK--SLDLWIAVVGGVHSHLISRVQRDK  651 (818)
Q Consensus       595 ~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~l----~~--~~D~~I~v~~~~d~rl~Rri~Rd~  651 (818)
                      ...... .... ......+|++|.....   ..+    ..  ..|..||+++|.++++.|...|+.
T Consensus        70 ~~~~l~-~~i~-~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~  133 (194)
T 1qf9_A           70 TVKLLK-NAID-ANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE  133 (194)
T ss_dssp             HHHHHH-HHHH-TSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT
T ss_pred             HHHHHH-HHHH-hcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccc
Confidence            000000 0000 0024578899854332   112    22  468899999999999999988853

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=98.76  E-value=5.9e-09  Score=106.05  Aligned_cols=116  Identities=14%  Similarity=-0.001  Sum_probs=68.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK  143 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~  143 (818)
                      .|+|+|++||||||+|+.|++.+|+.++++|++.+.....+.+   -...+.+.+.   .+..+.............   
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~---~~~~~~~~~~---~g~~~~~~~~~~~~~~~l---   72 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTE---LGLKAKSFMD---QGNLVPDEVTIGIVHERL---   72 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCH---HHHHHHHHHH---HTCCCCHHHHHHHHHHHH---
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCH---HHHHHHHHHH---CCCCCCHHHHHHHHHHHH---
Confidence            5899999999999999999999999999999987643322211   0111111111   121111001111111111   


Q ss_pred             ccccCCccEEEEEecccch---hhhh-------cCCCEEEEEEcCHHHHHHHHHHh
Q 003460          144 VIKGASSGVVIVDGTYALD---ARLR-------SLLDIRVAVVGGVHFSLISKVQY  189 (818)
Q Consensus       144 ~~~~~~~~vVIvEG~~l~~---~~l~-------~~~D~~I~Vda~~e~~l~Rri~R  189 (818)
                       ........+|++|.....   ..+.       ..+|.+||+++|.+++++|...|
T Consensus        73 -~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R  127 (216)
T 3fb4_A           73 -SKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR  127 (216)
T ss_dssp             -TSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred             -hcccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence             111113458889853322   1121       23799999999999999999988

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=98.75  E-value=1.5e-08  Score=98.67  Aligned_cols=145  Identities=9%  Similarity=0.082  Sum_probs=83.1

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccccc
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA  597 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~  597 (818)
                      .+|+|+|++||||||+++.|++.++..+++.|.|.....            ....+.+....+..|..+..-++-.+   
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~------------~~~~~~~~~~~l~~~~~vi~dr~~~~---   66 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS------------GNEKLFEHFNKLADEDNVIIDRFVYS---   66 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT------------CHHHHHHHHHHHTTCCSEEEESCHHH---
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh------------HHHHHHHHHHHHHhCCCeEEeeeecc---
Confidence            378999999999999999999999999999998876422            12333344455656655422221111   


Q ss_pred             cCCCcceeeec---CCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcchhhhh
Q 003460          598 RSGFKELEVSE---DCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQH  674 (818)
Q Consensus       598 r~~~~~~~~~~---~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~  674 (818)
                           ......   .... +...+...........|..||++++.++.+.|...|.     +......+...+...|...
T Consensus        67 -----~~v~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~-----r~~~~~~~~~~~~~~~~~~  135 (173)
T 3kb2_A           67 -----NLVYAKKFKDYSI-LTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRG-----DEYIEGKDIDSILELYREV  135 (173)
T ss_dssp             -----HHHHTTTBTTCCC-CCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHS-----CSCCCHHHHHHHHHHHHHH
T ss_pred             -----hHHHHHHHHHhhH-hhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC-----CcchhhhHHHHHHHHHHHH
Confidence                 000000   0000 0001110001111236789999999999999987762     1222223444455555554


Q ss_pred             ccccCCcccEEEeCC
Q 003460          675 IEPHLVHAHLKIRND  689 (818)
Q Consensus       675 I~p~~~~ADivI~n~  689 (818)
                      ...+ ..++++|+++
T Consensus       136 ~~~~-~~~~~~id~~  149 (173)
T 3kb2_A          136 MSNA-GLHTYSWDTG  149 (173)
T ss_dssp             HHTC-SSCEEEEETT
T ss_pred             Hhhc-CCCEEEEECC
Confidence            3333 3688898875

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=98.73  E-value=2.2e-08  Score=99.69  Aligned_cols=124  Identities=15%  Similarity=0.048  Sum_probs=73.9

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN  138 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~  138 (818)
                      ..++.+|+|+|++||||||+|+.|++.+|..++++|++++.....+..   ....+.+.+   ..|..+...........
T Consensus         6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~---~~~~i~~~~---~~g~~~~~~~~~~~~~~   79 (196)
T 2c95_A            6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSA---RGKKLSEIM---EKGQLVPLETVLDMLRD   79 (196)
T ss_dssp             HTTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCH---HHHHHHHHH---HTTCCCCHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCCh---HHHHHHHHH---HcCCcCCHHHHHHHHHH
Confidence            345678999999999999999999999999999999986643221111   111122222   12322111000000111


Q ss_pred             cccccccccCCccEEEEEecccchh------hhhcCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460          139 RIGSKVIKGASSGVVIVDGTYALDA------RLRSLLDIRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       139 ~~~~~~~~~~~~~vVIvEG~~l~~~------~l~~~~D~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                      .+.. .  ......+|+||......      ......|.+||+++|.+++.+|...|..
T Consensus        80 ~i~~-~--~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~  135 (196)
T 2c95_A           80 AMVA-K--VNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGE  135 (196)
T ss_dssp             HHHH-H--TTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHT
T ss_pred             HHHh-c--cccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCC
Confidence            1100 0  11345789998432211      1124579999999999999999888863

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=98.72  E-value=8.9e-09  Score=104.80  Aligned_cols=115  Identities=15%  Similarity=0.082  Sum_probs=68.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhh-hcCCccccccchhhhhccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKNRIGS  142 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l-~~~~~i~~p~~d~~~~~~~~~  142 (818)
                      .|+|+|++||||||+|+.|++.+|+.++++|++.+.....+.+       +...+... ..+..+.............  
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~~~l--   72 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETP-------LGLEAKSYIDKGELVPDEVTIGIVKERL--   72 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCH-------HHHHHHHHHTTTCCCCHHHHHHHHHHHH--
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCH-------HHHHHHHHHHCCCCCCHHHHHHHHHHHH--
Confidence            5899999999999999999999999999999987643322211       11111111 1121111001111111111  


Q ss_pred             cccccCCccEEEEEecccch---hhhh-------cCCCEEEEEEcCHHHHHHHHHHh
Q 003460          143 KVIKGASSGVVIVDGTYALD---ARLR-------SLLDIRVAVVGGVHFSLISKVQY  189 (818)
Q Consensus       143 ~~~~~~~~~vVIvEG~~l~~---~~l~-------~~~D~~I~Vda~~e~~l~Rri~R  189 (818)
                        ........+|++|.-...   ..+.       ..+|.+||+++|.+++++|...|
T Consensus        73 --~~~~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R  127 (216)
T 3dl0_A           73 --GKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR  127 (216)
T ss_dssp             --TSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred             --hcccccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence              111113458889852222   1121       23799999999999999999988

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.72  E-value=2.1e-08  Score=99.86  Aligned_cols=40  Identities=28%  Similarity=0.332  Sum_probs=35.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHH-hCCeEEeccceecc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASV-IGCTLISMENYRVG   99 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~-Lg~~vI~~D~~~~~   99 (818)
                      .++.+|+|+|++||||||+++.|++. +|+.++++|++.+.
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~   48 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKE   48 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHH
Confidence            34568999999999999999999998 79999999998653

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=98.69  E-value=4.1e-08  Score=99.98  Aligned_cols=38  Identities=18%  Similarity=0.497  Sum_probs=35.7

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      |.+|+|+|++||||||+++.|++.+|..++++|++++.
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~   40 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRA   40 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHH
Confidence            56899999999999999999999999999999999874

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=98.67  E-value=2.7e-08  Score=100.96  Aligned_cols=162  Identities=15%  Similarity=0.046  Sum_probs=78.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHH----HHhhhcCC--c-cccccchh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQN----LQDLTEGK--D-TLIPMFDY  134 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~----L~~l~~~~--~-i~~p~~d~  134 (818)
                      .++|+|+|++||||||+++.||+.||+++++ +++++..........-+++.+.+.    +..+..+.  . ...+.+..
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~   84 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIAI   84 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC---------------------------------CHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHHHH
Confidence            3589999999999999999999999999999 666543322211111111111111    00000000  0 00000000


Q ss_pred             hhhccccccccccCCccEEEEEecccchhhhhcC-CCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHH----Hhhchhhh
Q 003460          135 QQKNRIGSKVIKGASSGVVIVDGTYALDARLRSL-LDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLI----DSIFPLFR  209 (818)
Q Consensus       135 ~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~-~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~----~~~~p~~~  209 (818)
                      .... +..+....... -+|++|..+.. -+.+. ..++|||+||.+.+.+|+..+.........+.+    +...+.|+
T Consensus        85 ~~~~-~i~~la~~~~~-~~Vi~Gr~g~~-vl~~~~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~i~~~d~~R~~~y~  161 (201)
T 3fdi_A           85 RQFN-FIRKKANEEKE-SFVIVGRCAEE-ILSDNPNMISAFILGDKDTKTKRVMEREGVDEKTALNMMKKMDKMRKVYHN  161 (201)
T ss_dssp             HHHH-HHHHHHHTSCC-CEEEESTTHHH-HTTTCTTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHhhcCC-CEEEEECCcch-hcCCCCCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            0000 00011100122 35666543321 12222 358999999999999999887533221121112    12234444


Q ss_pred             hcc---CCccccCcEEEECCC
Q 003460          210 KHI---EPDLHHAQIRINNRF  227 (818)
Q Consensus       210 ~~I---ep~~~~ADiII~N~~  227 (818)
                      .+.   ......+|++|+++.
T Consensus       162 ~~~~~~~~~~~~~dl~Idt~~  182 (201)
T 3fdi_A          162 FYCESKWGDSRTYDICIKIGK  182 (201)
T ss_dssp             HHCSSCTTBGGGCSEEEEESS
T ss_pred             HHhCCCCCCcccCCEEEECCC
Confidence            432   233556899998873

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.66  E-value=2.1e-09  Score=105.32  Aligned_cols=37  Identities=19%  Similarity=0.329  Sum_probs=33.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV   98 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~   98 (818)
                      +.+|+|+|++||||||+++.|+..+|..++++|.+.+
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~   40 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIE   40 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHH
Confidence            3579999999999999999999999999999998755

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=98.65  E-value=5.3e-08  Score=96.72  Aligned_cols=151  Identities=15%  Similarity=0.184  Sum_probs=81.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR  139 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~  139 (818)
                      +.+.+|.|+|++||||||+++.|++.+|..+++.|.+...+......  .+.. ....+...         .+... ...
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~--~~~~-~~~~~~~~---------~~~~~-~~~   69 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGW--SDRE-WSRRVGAT---------AIMML-YHT   69 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCC--CSHH-HHHHHHHH---------HHHHH-HHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCc--cchH-HHHHhhHH---------HHHHH-HHH
Confidence            35678999999999999999999999999999999975432211000  0111 11111100         00000 000


Q ss_pred             ccccccccCCccEEEEEecccch---hh---hh---cCCCEEEEEEcCHHHHHHHHHHhccC-CCc--C-HHHHHH--hh
Q 003460          140 IGSKVIKGASSGVVIVDGTYALD---AR---LR---SLLDIRVAVVGGVHFSLISKVQYDIG-DSC--S-LDSLID--SI  204 (818)
Q Consensus       140 ~~~~~~~~~~~~vVIvEG~~l~~---~~---l~---~~~D~~I~Vda~~e~~l~Rri~Rd~~-~~~--s-~e~~~~--~~  204 (818)
                      . ...+  .....+|+|+.+...   ..   +.   ...+..||+++|.++.++|...|... .+.  . ......  +.
T Consensus        70 ~-~~~l--~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~  146 (193)
T 2rhm_A           70 A-ATIL--QSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLEL  146 (193)
T ss_dssp             H-HHHH--HTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHHHHH
T ss_pred             H-HHHH--hCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcchhh
Confidence            0 0001  112357888887321   11   22   22458899999999999998877642 121  0 111111  11


Q ss_pred             chhhhhccCCcc-ccCcEEEECCC
Q 003460          205 FPLFRKHIEPDL-HHAQIRINNRF  227 (818)
Q Consensus       205 ~p~~~~~Iep~~-~~ADiII~N~~  227 (818)
                      ...+.. .+|.. ..++++|+++.
T Consensus       147 ~~~~~~-~~~~~~~~~~~~Idt~~  169 (193)
T 2rhm_A          147 VRSRGD-IPPLPLGGPLLTVDTTF  169 (193)
T ss_dssp             HHHSCC-CCCCCCCSCEEEEECSS
T ss_pred             HHHHhc-CCCccCCCCEEEEeCCC
Confidence            223333 23333 36889998874

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=98.64  E-value=5.7e-08  Score=96.11  Aligned_cols=115  Identities=20%  Similarity=0.034  Sum_probs=67.8

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI  140 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~  140 (818)
                      ...+|+|+|++||||||+|+.|++.+|..++++|++.+.....+.+   ....+.+.+.   .+...    .+.......
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~---~~~~i~~~~~---~g~~~----~~~~~~~~~   72 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTP---LGERVRPIME---RGDLV----PDDLILELI   72 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCH---HHHHHHHHHH---TTCCC----CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCCh---HHHHHHHHHH---cCCcC----CHHHHHHHH
Confidence            3568999999999999999999999999999999876532111111   0011122221   12111    111111111


Q ss_pred             cccccccCCccEEEEEecccchh-------hhhc---CCCEEEEEEcCHHHHHHHHHHhc
Q 003460          141 GSKVIKGASSGVVIVDGTYALDA-------RLRS---LLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       141 ~~~~~~~~~~~vVIvEG~~l~~~-------~l~~---~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                      .. .+.  .  -+|++|......       .+..   .+|.+||+++|.+.+++|...|.
T Consensus        73 ~~-~l~--~--~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~  127 (186)
T 3cm0_A           73 RE-ELA--E--RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRA  127 (186)
T ss_dssp             HH-HCC--S--EEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred             HH-Hhc--C--CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence            11 111  1  178888643211       1111   26899999999999999988885

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=98.64  E-value=1.4e-07  Score=99.37  Aligned_cols=137  Identities=16%  Similarity=0.207  Sum_probs=80.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHH---hCCeEE--eccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchh
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASV---IGCTLI--SMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDY  134 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~---Lg~~vI--~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~  134 (818)
                      .++.+|.|+|++||||||+|+.|++.   +|..++  +.|.+...+..+. .  . .+.....+.               
T Consensus         2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~-~--~-~e~~~~~~~---------------   62 (260)
T 3a4m_A            2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWK-E--K-YEEFIKKST---------------   62 (260)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCC-G--G-GHHHHHHHH---------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhh-H--H-HHHHHHHHH---------------
Confidence            35789999999999999999999997   687776  8888765433210 0  0 111111000               


Q ss_pred             hhhccccccccccCCccEEEEEecccch---hhhhc------CCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhc
Q 003460          135 QQKNRIGSKVIKGASSGVVIVDGTYALD---ARLRS------LLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIF  205 (818)
Q Consensus       135 ~~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~------~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~  205 (818)
                        ...+. ...  .. ..+|+||.....   ..+..      ..+..||+++|.+++++|...|..  ..+. +.++.. 
T Consensus        63 --~~~i~-~~l--~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~--~~~~-~~l~~~-  132 (260)
T 3a4m_A           63 --YRLID-SAL--KN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE--KIPN-EVIKKM-  132 (260)
T ss_dssp             --HHHHH-HHH--TT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTC--SSCH-HHHHHH-
T ss_pred             --HHHHH-HHh--hC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCC--CCCH-HHHHHH-
Confidence              00000 011  12 578889866543   12222      237899999999999999888752  1222 333332 


Q ss_pred             hhhhhccCCcc----ccCcEEEECCC
Q 003460          206 PLFRKHIEPDL----HHAQIRINNRF  227 (818)
Q Consensus       206 p~~~~~Iep~~----~~ADiII~N~~  227 (818)
                        +..|-+|..    ..++++|+++.
T Consensus       133 --~~~~e~~~~~~~~~~~~~~Id~~~  156 (260)
T 3a4m_A          133 --YEKFDEPGKKYKWDEPFLIIDTTK  156 (260)
T ss_dssp             --HHHCCCTTSSCGGGCCSEEEETTS
T ss_pred             --HHHhcCccccCCCCCCEEEEeCCC
Confidence              333333332    35889998875

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=98.63  E-value=1.1e-07  Score=99.18  Aligned_cols=125  Identities=13%  Similarity=-0.041  Sum_probs=75.2

Q ss_pred             HHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccc
Q 003460          511 LENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPI  590 (818)
Q Consensus       511 ~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~  590 (818)
                      .....+|++|+|+||+||||||+|+.|++.+|..++|.|+..+.....       ++   +...+.-..+.+|..+.-..
T Consensus        23 ~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~-------~~---~~g~~i~~~~~~g~~~~~~~   92 (243)
T 3tlx_A           23 ACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEK-------KT---ELGLKIKNIINEGKLVDDQM   92 (243)
T ss_dssp             HHHTSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTS-------SS---HHHHHHHHHHHTTCCCCHHH
T ss_pred             HhccCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhc-------cc---hHHHHHHHHHhcCCCCcHHH
Confidence            334567899999999999999999999999999999999998752110       11   01111111222333221111


Q ss_pred             ccccccccCCCcceeeecCCcEEEEEecccchH---hhh-------hcCCEEEEEEcChhHHHHHHHhcC
Q 003460          591 FDLETGARSGFKELEVSEDCGVIIFEGVYALHP---EIR-------KSLDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       591 yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~---~l~-------~~~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                      .......+..     ......-+|++|......   .+.       ...|..|++++|.++.+.|...|.
T Consensus        93 ~~~~~~~~l~-----~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~  157 (243)
T 3tlx_A           93 VLSLVDEKLK-----TPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRL  157 (243)
T ss_dssp             HHHHHHHHTT-----SGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             HHHHHHHHHh-----cccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCC
Confidence            1111111110     001134578899433321   222       237899999999999999998885

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=98.63  E-value=4e-08  Score=98.13  Aligned_cols=121  Identities=16%  Similarity=0.106  Sum_probs=72.8

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET  595 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~  595 (818)
                      .+.+|+|+|++||||||+|+.|++.+|..++++|+++......    +.+   ....+.+.+   ..|..+..    ...
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~----~~~---~~~~i~~~~---~~g~~~~~----~~~   76 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELAS----ESE---RSKLIRDIM---ERGDLVPS----GIV   76 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHH----TCH---HHHHHHHHH---HTTCCCCH----HHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHh----CCH---HHHHHHHHH---HcCCcCCH----HHH
Confidence            3678999999999999999999999999999999998753210    000   001111111   12221100    000


Q ss_pred             cccCCCcce-eeecCCcEEEEEecccch---Hhhhh---cCCEEEEEEcChhHHHHHHHhcCc
Q 003460          596 GARSGFKEL-EVSEDCGVIIFEGVYALH---PEIRK---SLDLWIAVVGGVHSHLISRVQRDK  651 (818)
Q Consensus       596 ~~r~~~~~~-~~~~~~~vvIvEG~~~~~---~~l~~---~~D~~I~v~~~~d~rl~Rri~Rd~  651 (818)
                      +.... ... ........+|+||.....   ..+..   ..|..||++++.++++.|...|+.
T Consensus        77 ~~~~~-~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~  138 (199)
T 2bwj_A           77 LELLK-EAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSR  138 (199)
T ss_dssp             HHHHH-HHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCC
T ss_pred             HHHHH-HHHhcccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCC
Confidence            00000 000 001134678999976542   22333   578999999999999999888863

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=98.62  E-value=2.9e-08  Score=96.61  Aligned_cols=36  Identities=11%  Similarity=0.147  Sum_probs=33.6

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      +|+|+|++||||||+|+.|++.+|..++++|++...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~   37 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQK   37 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHH
Confidence            689999999999999999999999999999999764

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=98.61  E-value=1e-07  Score=95.89  Aligned_cols=40  Identities=15%  Similarity=0.202  Sum_probs=36.8

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      +.+.+|+|+|++||||||+|+.|++.+|..++++|++++.
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~   52 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRA   52 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHH
Confidence            4678999999999999999999999999999999998764

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.60  E-value=1.4e-08  Score=100.02  Aligned_cols=38  Identities=24%  Similarity=0.238  Sum_probs=34.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG   99 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~   99 (818)
                      |.+|.|+|++||||||+|+.|++.+|+.++++|++++.
T Consensus         4 m~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~   41 (175)
T 1via_A            4 AKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQ   41 (175)
T ss_dssp             -CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHH
Confidence            34699999999999999999999999999999998653

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.60  E-value=2.4e-08  Score=98.92  Aligned_cols=36  Identities=19%  Similarity=0.414  Sum_probs=33.7

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      +|+|+|++||||||+|+.|++.+|+.++++|+++..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~   39 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQ   39 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHH
Confidence            589999999999999999999999999999998764

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.58  E-value=2.3e-07  Score=93.45  Aligned_cols=40  Identities=33%  Similarity=0.442  Sum_probs=35.5

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      ..+.+|+|+|++||||||+++.|+..+|..+++.|++...
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~   66 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSP   66 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccH
Confidence            4567899999999999999999999999999999998754

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.58  E-value=8.5e-08  Score=96.54  Aligned_cols=39  Identities=26%  Similarity=0.399  Sum_probs=35.1

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      +..+|+|.|++||||||+++.|++.+|..++++|++...
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~   62 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEE   62 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHH
Confidence            345789999999999999999999999999999998754

>2fbl_A Hypothetical protein NE1496; APC5855, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.90A {Nitrosomonas europaea} SCOP: d.63.1.2

Probab=98.57  E-value=1.1e-07  Score=92.03  Aligned_cols=94  Identities=9%  Similarity=0.106  Sum_probs=70.8

Q ss_pred             ccccceeeccCCCCCcchhhh-ccCCeeeEeeeCCEEEEEEcceeecCCCcccCceeEEEEec---cHHHHHHhcCCcee
Q 003460          257 EAQTDNFIEMYLRPPSATEEA-RINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---MTLGGLLDLGYSVV  332 (818)
Q Consensus       257 ~~~~d~y~~~~~r~~~~~dea-~~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v---~~~~~L~~LGf~~~  332 (818)
                      ....+.|++++      ++++ +     |||..+++++|||||+.    +   .+|.|+|..|   .+.++|..+   ..
T Consensus        23 ~~i~QgYl~~~------~~~~~v-----RvR~~g~~~~lT~Kg~~----g---~~R~E~E~~I~~~~~~~ll~~~---~~   81 (153)
T 2fbl_A           23 VPLRQGYLTTP------TDSIEL-----RLRQQGTEYFMTLKSEG----G---LSRQEYEIQIDVTQFEMLWPAT---EG   81 (153)
T ss_dssp             EEEEEEESSCT------TSSSEE-----EEEEETTEEEEEEEC-------------CEEEEEECHHHHHHHGGGG---TT
T ss_pred             eEEEEEEecCC------CCceEE-----EEEEeCCEEEEEEEcCC----C---ceeEEEEEECCHHHHHHHHhhC---CC
Confidence            44667888853      4556 6     99999999999999887    5   6899999999   566666544   36


Q ss_pred             EEEEEEEEEEEeCC-EEEEEeccCC-CC-CCeEEEEecCHHH
Q 003460          333 ASYKRASTYVVYGN-LSVSFETIDT-LD-ETFMVLRGTNRKT  371 (818)
Q Consensus       333 ~~~~K~R~~~~~~~-~~i~lD~v~~-lg-~~fvEiE~~~~~~  371 (818)
                      ..++|.|..|.+++ ..++||.++| ++ -.++|||..++++
T Consensus        82 ~~I~K~Ry~~~~~~~~~~evD~f~g~~~gL~~aEvE~~~e~e  123 (153)
T 2fbl_A           82 RRVEKTRYSGKLPDGQLFELDVFAGHLSPLMLVEVEFLSEDA  123 (153)
T ss_dssp             SEEEEEEEEEECTTCCEEEEEEECGGGTTCEEEEEEESSHHH
T ss_pred             CEEEEEEEEEEcCCcEEEEEEEECCcCCCeEEEEEEecCccc
Confidence            78999999999999 9999999986 33 3489999877654

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=98.57  E-value=1.4e-07  Score=93.58  Aligned_cols=32  Identities=31%  Similarity=0.432  Sum_probs=29.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHh---CCeEEeccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISMEN   95 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~L---g~~vI~~D~   95 (818)
                      +|+|+|++||||||+|+.|++.+   |+.++++|.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~   36 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE   36 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            69999999999999999999988   999999874

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.57  E-value=3.7e-07  Score=91.55  Aligned_cols=155  Identities=15%  Similarity=0.129  Sum_probs=79.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceeccccc----CCCCCcccHHHHHHHHHhhhcCCccccccchhhh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE----GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ  136 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~----~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~  136 (818)
                      ...+|||+||+||||||+++.|+..+....++.....+....    +-..-..+...+.....   .+.-.....+....
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~   82 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVK---EGAFLEHATIYERH   82 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHH---HTCEEEEEEETTEE
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHh---cCcEEeeeeeeccc
Confidence            345899999999999999999998765333333333221110    00011112222222111   11101100000000


Q ss_pred             ----hccccccccccCCccEEEEEecccchhhhhcCCC--EEEEEEc-CHHHHHHHHHHhccCCCcCHHHHHHhhchhhh
Q 003460          137 ----KNRIGSKVIKGASSGVVIVDGTYALDARLRSLLD--IRVAVVG-GVHFSLISKVQYDIGDSCSLDSLIDSIFPLFR  209 (818)
Q Consensus       137 ----~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D--~~I~Vda-~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~  209 (818)
                          ...+. ..  ......+++++.......+...++  ..||+.. +.+...+|...|+..........++.+.+...
T Consensus        83 ~~~~~~~i~-~~--l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~  159 (205)
T 3tr0_A           83 YGTEKDWVL-RQ--LKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEMA  159 (205)
T ss_dssp             EEEEHHHHH-HH--HHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHHHT
T ss_pred             ccchHHHHH-HH--HHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence                00010 11  122447888865333333333333  5577766 47888888888875554566666666655544


Q ss_pred             hccCCccccCcEEEECC
Q 003460          210 KHIEPDLHHAQIRINNR  226 (818)
Q Consensus       210 ~~Iep~~~~ADiII~N~  226 (818)
                      .     .+.||+||.|+
T Consensus       160 ~-----~~~~d~vi~n~  171 (205)
T 3tr0_A          160 H-----YKEFDYLVVND  171 (205)
T ss_dssp             T-----GGGCSEEEECS
T ss_pred             c-----ccCCCEEEECC
Confidence            3     47899999998

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=98.56  E-value=1.3e-07  Score=97.60  Aligned_cols=38  Identities=21%  Similarity=0.300  Sum_probs=34.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV   98 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~   98 (818)
                      .+++|+|+|++||||||+|+.||+.||+.+++.|.+..
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~   50 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKL   50 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHH
Confidence            46799999999999999999999999999999776644

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.54  E-value=5.1e-08  Score=96.49  Aligned_cols=38  Identities=18%  Similarity=0.224  Sum_probs=34.5

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      +.+|.|+|++||||||+|+.|++.+|..+++.|++...
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~   42 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEK   42 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence            45688999999999999999999999999999998664

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.54  E-value=9e-08  Score=100.38  Aligned_cols=40  Identities=23%  Similarity=0.267  Sum_probs=35.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD  101 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~  101 (818)
                      ..+|+|+|++||||||+++.|++.+|..++++|.+++...
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~   87 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAM   87 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHh
Confidence            3579999999999999999999999999999999876443

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=98.53  E-value=2.2e-07  Score=93.46  Aligned_cols=41  Identities=32%  Similarity=0.484  Sum_probs=37.3

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      ...|.+|+|+|++||||||+|+.|++.+|..++++|++.+.
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~   57 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRR   57 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHH
Confidence            45678999999999999999999999999999999998764

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.53  E-value=5.2e-07  Score=88.41  Aligned_cols=40  Identities=23%  Similarity=0.210  Sum_probs=35.7

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      ....+|+|+|++||||||+++.|+..+|..+++.|++...
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~   45 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPR   45 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccch
Confidence            3457899999999999999999999999999999998753

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.52  E-value=1e-07  Score=94.03  Aligned_cols=103  Identities=22%  Similarity=0.204  Sum_probs=62.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc------cCCCCCcccHHHHHHHHHhhhcCCccccccchh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD------EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDY  134 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~------~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~  134 (818)
                      .+.+|.|+|++||||||+++.|++.+|+.++++|++.+...      ........+.+.+.+.+....            
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------   77 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQM------------   77 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHHHHHH------------
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHHHHHH------------
Confidence            34578899999999999999999999999999999754221      111111122222332222110            


Q ss_pred             hhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          135 QQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       135 ~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                                 ..  .. +|+++..... .-....|.+||++++.++.++|...|.
T Consensus        78 -----------~~--g~-~vv~~~~~~~-~~~~~~~~vi~L~~~~e~l~~R~~~r~  118 (180)
T 3iij_A           78 -----------RE--GG-VIVDYHGCDF-FPERWFHIVFVLRTDTNVLYERLETRG  118 (180)
T ss_dssp             -----------HH--CC-EEEECSCCTT-SCGGGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             -----------hc--CC-EEEEechhhh-cchhcCCEEEEEECCHHHHHHHHHHcC
Confidence                       00  11 2233322110 001237899999999999999988885

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=98.52  E-value=1.9e-07  Score=93.33  Aligned_cols=61  Identities=3%  Similarity=0.049  Sum_probs=38.7

Q ss_pred             cCCCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHHHHhhchhhhhccCCcc-ccCcEEEECCC
Q 003460          167 SLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHIEPDL-HHAQIRINNRF  227 (818)
Q Consensus       167 ~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~~~~~p~~~~~Iep~~-~~ADiII~N~~  227 (818)
                      ...|.+|||++|.+++++|...|..... .......+.+...|..+.+++. ..++++|+|+.
T Consensus       123 ~~~d~vi~L~~~~e~~~~Rl~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~  185 (205)
T 2jaq_A          123 LSFDIVIYLRVSTKTAISRIKKRGRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAEL  185 (205)
T ss_dssp             CCCSEEEEEECCHHHHHHHHHHHTCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTS
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHcCChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCC
Confidence            4578999999999999999877631100 0001333444455554444444 67899999884

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.52  E-value=5.9e-08  Score=96.07  Aligned_cols=37  Identities=16%  Similarity=0.206  Sum_probs=33.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceec
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV   98 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~   98 (818)
                      +.+|.|+|++||||||+++.|++.+|     ..++++|++.+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r   44 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMF   44 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHH
Confidence            35899999999999999999999998     89999998755

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.51  E-value=6.4e-08  Score=94.38  Aligned_cols=39  Identities=26%  Similarity=0.257  Sum_probs=34.6

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      ..-+|+|+|++||||||+|+.|++.+|..++++|++...
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~   44 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISE   44 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence            345899999999999999999999999999999998764

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=98.50  E-value=1.5e-07  Score=95.46  Aligned_cols=116  Identities=11%  Similarity=0.033  Sum_probs=66.7

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR  598 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r  598 (818)
                      .|+|+|++||||||+|+.|++.+|..++++|++.+......       +.-...+.+   .+..|..+.-.........+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~-------~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~   71 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNG-------TELGLKAKS---FMDQGNLVPDEVTIGIVHER   71 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTT-------CHHHHHHHH---HHHHTCCCCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcC-------CHHHHHHHH---HHHCCCCCCHHHHHHHHHHH
Confidence            58899999999999999999999999999999987531110       000001111   11112111100000000000


Q ss_pred             CCCcceeeecCCcEEEEEecccch---Hhhhh-------cCCEEEEEEcChhHHHHHHHhc
Q 003460          599 SGFKELEVSEDCGVIIFEGVYALH---PEIRK-------SLDLWIAVVGGVHSHLISRVQR  649 (818)
Q Consensus       599 ~~~~~~~~~~~~~vvIvEG~~~~~---~~l~~-------~~D~~I~v~~~~d~rl~Rri~R  649 (818)
                      .     ........+|++|.....   ..+..       .+|..|++++|.++.+.|...|
T Consensus        72 l-----~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R  127 (216)
T 3fb4_A           72 L-----SKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR  127 (216)
T ss_dssp             H-----TSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred             H-----hcccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence            0     000112457888853322   12222       2789999999999999999888

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=98.50  E-value=1.1e-06  Score=86.23  Aligned_cols=36  Identities=19%  Similarity=0.274  Sum_probs=30.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeE--Eeccceec
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTL--ISMENYRV   98 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~v--I~~D~~~~   98 (818)
                      .+|.|+|++||||||+|+.|++.++...  ++.|.+..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~   41 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE   41 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence            5799999999999999999999998654  46887754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=98.50  E-value=2.2e-07  Score=92.38  Aligned_cols=120  Identities=17%  Similarity=0.136  Sum_probs=71.0

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET  595 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~  595 (818)
                      ++.+|+|+|++||||||+|+.|++.+|..++++|+++......       ++.....+.+.   +..|+.+..    ...
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~-------~~~~~~~i~~~---~~~g~~~~~----~~~   73 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSS-------GSARGKKLSEI---MEKGQLVPL----ETV   73 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHT-------TCHHHHHHHHH---HHTTCCCCH----HHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHc-------CChHHHHHHHH---HHcCCcCCH----HHH
Confidence            5678999999999999999999999999999999988753211       00001111111   122322110    000


Q ss_pred             cccCCCcce-eeecCCcEEEEEecccchHh---h---hhcCCEEEEEEcChhHHHHHHHhcC
Q 003460          596 GARSGFKEL-EVSEDCGVIIFEGVYALHPE---I---RKSLDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       596 ~~r~~~~~~-~~~~~~~vvIvEG~~~~~~~---l---~~~~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                      +.... ... ........+|+||.......   +   ....|..||++++.++++.|...|.
T Consensus        74 ~~~~~-~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~  134 (196)
T 2c95_A           74 LDMLR-DAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRG  134 (196)
T ss_dssp             HHHHH-HHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccC
Confidence            00000 000 00112367899984332211   1   2456899999999999999988775

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=98.50  E-value=6.2e-08  Score=94.57  Aligned_cols=37  Identities=22%  Similarity=0.425  Sum_probs=34.0

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      .+|+|+|++||||||+|+.|++.+|..++++|+++..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~   39 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQH   39 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHH
Confidence            3689999999999999999999999999999998764

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=98.50  E-value=8.4e-08  Score=94.00  Aligned_cols=114  Identities=14%  Similarity=0.044  Sum_probs=67.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHH-HhCCeEEeccceecccccCCCC--CcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLAS-VIGCTLISMENYRVGVDEGNDL--DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN  138 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~-~Lg~~vI~~D~~~~~~~~~~~~--~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~  138 (818)
                      +.+|.|+|++||||||+|+.|++ .+|+.++++|.++.........  ..++.+. ...+..+              ...
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~   66 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKK-EGIVTGM--------------QFD   66 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHH-HHHHHHH--------------HHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhCCCccchhhhchhh-hhHHHHH--------------HHH
Confidence            46899999999999999999998 6899999999876543221000  1122111 0000000              000


Q ss_pred             cccccccc-cCCccEEEEEecccch---hhhhc------CCCEEEEEEcCHHHHHHHHHHhcc
Q 003460          139 RIGSKVIK-GASSGVVIVDGTYALD---ARLRS------LLDIRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       139 ~~~~~~~~-~~~~~vVIvEG~~l~~---~~l~~------~~D~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                      .+. ..+. ......+|+||.....   ..+..      .-...||++++.+++++|...|..
T Consensus        67 ~~~-~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~  128 (181)
T 1ly1_A           67 TAK-SILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT  128 (181)
T ss_dssp             HHH-HHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG
T ss_pred             HHH-HHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcccc
Confidence            000 0000 0234578999876532   22221      123689999999999999888764

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=98.48  E-value=2.4e-08  Score=99.92  Aligned_cols=59  Identities=10%  Similarity=0.131  Sum_probs=40.3

Q ss_pred             hcCCEEEEEEcChhHHHHHHHhcCccccCcccch---hhHHHhhcchhhhhccccC-CcccEEEeCCC
Q 003460          627 KSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ---NDIMMTVFPMFQQHIEPHL-VHAHLKIRNDF  690 (818)
Q Consensus       627 ~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~---~~~~~~v~p~~~~~I~p~~-~~ADivI~n~~  690 (818)
                      ...|..||++++.++++.|...|     |+..+.   .++...+...|..+..++. ..+|++|+++-
T Consensus       123 ~~~d~vi~L~~~~e~~~~Rl~~R-----~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~  185 (205)
T 2jaq_A          123 LSFDIVIYLRVSTKTAISRIKKR-----GRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAEL  185 (205)
T ss_dssp             CCCSEEEEEECCHHHHHHHHHHH-----TCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTS
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHc-----CChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCC
Confidence            45789999999999999997665     333221   1344555666666555555 67899998764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.47  E-value=3e-07  Score=90.88  Aligned_cols=38  Identities=21%  Similarity=0.262  Sum_probs=34.2

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccch
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKS  554 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~  554 (818)
                      +.+|.|+|++||||||+++.|++.++     ..++++|++++.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~   45 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFE   45 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHH
Confidence            45799999999999999999999998     889999988764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.47  E-value=1.6e-07  Score=94.28  Aligned_cols=157  Identities=12%  Similarity=0.028  Sum_probs=62.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCC-eEEeccceecccc----cCCCCCcccHHHHHHHHHhhhcCCccccccchhhh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGC-TLISMENYRVGVD----EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ  136 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~-~vI~~D~~~~~~~----~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~  136 (818)
                      ..+|+|+|++||||||+++.|+..+.. .-+......+...    ++...-..+...+...   ...+..+..+.+....
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~   82 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEAL---IKDDQFIEYAEYVGNY   82 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHH---HHcCCeEEEEeECCee
Confidence            458999999999999999999987621 1111111111000    0000000122222221   1222323333322211


Q ss_pred             hcccccccc-ccCCccEEEEEecccchhhhhcCC-C-EEEEEE-cCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhhcc
Q 003460          137 KNRIGSKVI-KGASSGVVIVDGTYALDARLRSLL-D-IRVAVV-GGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHI  212 (818)
Q Consensus       137 ~~~~~~~~~-~~~~~~vVIvEG~~l~~~~l~~~~-D-~~I~Vd-a~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~~I  212 (818)
                      ......... .......+|+|+.+.....+...+ | ..+|+. ++.+...+|...|+..........+..+.+...   
T Consensus        83 ~g~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~~---  159 (207)
T 2j41_A           83 YGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEARKEVE---  159 (207)
T ss_dssp             EEEEHHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC---------------------------CGGG---
T ss_pred             cCCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---
Confidence            000000000 012246899999887766666555 7 445554 346677777777753221222222232333222   


Q ss_pred             CCccccCcEEEECC
Q 003460          213 EPDLHHAQIRINNR  226 (818)
Q Consensus       213 ep~~~~ADiII~N~  226 (818)
                        ....||++|+|+
T Consensus       160 --~~~~~d~vI~n~  171 (207)
T 2j41_A          160 --MMNLYDYVVVND  171 (207)
T ss_dssp             --GGGGCSEEEECS
T ss_pred             --ccccCCEEEECC
Confidence              246789999987

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.47  E-value=3.9e-07  Score=92.01  Aligned_cols=162  Identities=17%  Similarity=0.146  Sum_probs=79.7

Q ss_pred             hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-eEEeccceecccc----cCCCCCcccHHHHHHHHHhhhcCCccccccc
Q 003460           58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIGC-TLISMENYRVGVD----EGNDLDSIDFDALVQNLQDLTEGKDTLIPMF  132 (818)
Q Consensus        58 ~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~-~vI~~D~~~~~~~----~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~  132 (818)
                      ......+|+|+|+|||||||+++.|++.++. ...+....-+...    ++....-.+.+.+...+.   .+.-+....+
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~   84 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLK---EGQFLEFDKY   84 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHH---TTCEEEEEEE
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHH---cCCCEEeHHh
Confidence            3456678999999999999999999998753 2222222111110    110111123333333322   2222222212


Q ss_pred             hhhhhcccc-ccccccCCccEEEEEecccchhhhhcCC---C-EEEEEE-cCHHHHHHHHHHhccCCCcCHHHHHHhhch
Q 003460          133 DYQQKNRIG-SKVIKGASSGVVIVDGTYALDARLRSLL---D-IRVAVV-GGVHFSLISKVQYDIGDSCSLDSLIDSIFP  206 (818)
Q Consensus       133 d~~~~~~~~-~~~~~~~~~~vVIvEG~~l~~~~l~~~~---D-~~I~Vd-a~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p  206 (818)
                      ......... ...........+|+++.......+...+   + ..|||+ ++.+...+|...|..   .+.+.+.++...
T Consensus        85 ~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~---~~~~~i~~rl~~  161 (204)
T 2qor_A           85 ANNFYGTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNT---EKPEEINKRMQE  161 (204)
T ss_dssp             TTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTT---SCHHHHHHHHHH
T ss_pred             CCCeecCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCC---CCHHHHHHHHHH
Confidence            111110000 0000112356788886544333444443   3 889998 898888887766642   233333332211


Q ss_pred             hhhhccCC-ccccCcEEEECC
Q 003460          207 LFRKHIEP-DLHHAQIRINNR  226 (818)
Q Consensus       207 ~~~~~Iep-~~~~ADiII~N~  226 (818)
                      .... +.+ ....+|++|.|+
T Consensus       162 ~~~~-~~~~~~~~~d~vi~n~  181 (204)
T 2qor_A          162 LTRE-MDEADKVGFNYFIVND  181 (204)
T ss_dssp             HHHH-HHHHHHHTCSEEEECS
T ss_pred             HHHH-HHHhhhccCcEEEECc
Confidence            1111 111 346789999987

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=98.46  E-value=4.6e-07  Score=89.61  Aligned_cols=37  Identities=16%  Similarity=0.371  Sum_probs=32.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceec
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV   98 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~   98 (818)
                      |.+|.|+|++||||||+|+.|++.++     +.+++.|++..
T Consensus         1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~   42 (194)
T 1nks_A            1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFML   42 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHH
Confidence            46899999999999999999999997     77888777643

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=98.46  E-value=2.6e-07  Score=94.31  Aligned_cols=120  Identities=13%  Similarity=-0.033  Sum_probs=69.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI  140 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~  140 (818)
                      +++.|.|.|++||||||+|+.|++.+|..++++|++.+.....+.+.  . ..+.+.+..   |..+.    +......+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~--g-~~i~~~~~~---g~~~~----~~~~~~~i   73 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKI--G-LEAKSIIES---GNFVG----DEIVLGLV   73 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--C--C-HHHHHHHHH---TCCCC----HHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHH--H-HHHHHHHHC---CCcCC----HHHHHHHH
Confidence            34679999999999999999999999999999999866432222111  1 111222211   21110    00000000


Q ss_pred             cccccccCCccEEEEEecccch---hh----h---hcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          141 GSKVIKGASSGVVIVDGTYALD---AR----L---RSLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       141 ~~~~~~~~~~~vVIvEG~~l~~---~~----l---~~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                      ............+|++|...-.   ..    +   ....|.+||++++.++.++|...|.
T Consensus        74 ~~~l~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~  133 (217)
T 3be4_A           74 KEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRC  133 (217)
T ss_dssp             HHHHHTTTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             HHHHhccccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence            0000011123457889842210   11    1   1246899999999999999988775

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=98.45  E-value=2.9e-07  Score=93.96  Aligned_cols=121  Identities=12%  Similarity=0.037  Sum_probs=68.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI  140 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~  140 (818)
                      +++.|+|.|++||||||+|+.|++.+|..++++|++.+.....+.+  . -..+.+.+.   .|................
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~--~-g~~i~~~~~---~g~~~~~~~~~~~l~~~l   76 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQ--L-GLEAKKIMD---QGGLVSDDIMVNMIKDEL   76 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCH--H-HHHHHHHHH---TTCCCCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCCh--H-HHHHHHHHH---CCCcCCHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999986643221111  0 011111111   121110000000001110


Q ss_pred             cccccccCCccEEEEEecccch---h----h---hhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          141 GSKVIKGASSGVVIVDGTYALD---A----R---LRSLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       141 ~~~~~~~~~~~vVIvEG~~l~~---~----~---l~~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                      ..   .......+|++|.....   .    .   ....+|.+||++++.+..++|...|.
T Consensus        77 ~~---~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~  133 (220)
T 1aky_A           77 TN---NPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRL  133 (220)
T ss_dssp             HH---CGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             Hh---ccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCC
Confidence            00   00112357889832111   1    1   12357899999999999999988775

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=98.44  E-value=2.9e-07  Score=93.51  Aligned_cols=36  Identities=19%  Similarity=0.346  Sum_probs=33.8

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      .|+|+|++||||||+|+.|++.+|+.++++|++.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~   37 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRA   37 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHH
Confidence            588999999999999999999999999999999875

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=98.42  E-value=3.7e-07  Score=92.49  Aligned_cols=36  Identities=28%  Similarity=0.419  Sum_probs=32.3

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK  553 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~  553 (818)
                      ..+|+|+|++||||||+++.|++.||..+++ ++.+.
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~   41 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLD   41 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHH
Confidence            4589999999999999999999999999998 66654

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=98.41  E-value=2.6e-07  Score=94.81  Aligned_cols=119  Identities=11%  Similarity=0.019  Sum_probs=68.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhh-hcCCccccccchhhhhc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKN  138 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l-~~~~~i~~p~~d~~~~~  138 (818)
                      .++.+|+|.|++||||||+|+.|++.+|..++++|++.+.....+.+       +...+..+ ..|..+...........
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~-------~g~~i~~~~~~g~~~~~~~~~~~~~~   77 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTE-------IGVLAKAFIDQGKLIPDDVMTRLALH   77 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCH-------HHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCCh-------HHHHHHHHHHcCCcCCHHHHHHHHHH
Confidence            34678999999999999999999999999999999986642211110       11111111 11211110000000111


Q ss_pred             cccccccccCCccEEEEEecccch---hhhh--cCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          139 RIGSKVIKGASSGVVIVDGTYALD---ARLR--SLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       139 ~~~~~~~~~~~~~vVIvEG~~l~~---~~l~--~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                      +..     .+....+|+||.....   ..+.  ...|.+||++++.+.+++|...|.
T Consensus        78 ~l~-----~~~~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R~  129 (227)
T 1zd8_A           78 ELK-----NLTQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARW  129 (227)
T ss_dssp             HHH-----TCTTSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCEE
T ss_pred             HHh-----cccCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcCc
Confidence            110     0012347789854321   1122  347899999999999999987763

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=98.41  E-value=3.6e-07  Score=90.61  Aligned_cols=39  Identities=21%  Similarity=0.402  Sum_probs=35.1

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK  553 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~  553 (818)
                      ..+.+|.|+|++||||||+++.|++.+|..+++.|++..
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~   41 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKE   41 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHH
Confidence            357889999999999999999999999999999998754

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.40  E-value=1e-06  Score=92.46  Aligned_cols=35  Identities=29%  Similarity=0.464  Sum_probs=33.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY   96 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~   96 (818)
                      |.+|+|+|++||||||+|+.|++.+|+.++++|++
T Consensus         1 M~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~   35 (253)
T 2ze6_A            1 MLLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV   35 (253)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred             CeEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence            46899999999999999999999999999999996

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=98.39  E-value=3.8e-07  Score=93.58  Aligned_cols=124  Identities=12%  Similarity=-0.015  Sum_probs=73.6

Q ss_pred             hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhh
Q 003460           58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQ  136 (818)
Q Consensus        58 ~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~  136 (818)
                      +..++.+|.|.||+||||||.|+.|++.+|+.+|+++++.+.....+.+       +-..+.. +..|+-+.-.......
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~-------lg~~~~~~~~~G~lVpde~~~~lv   97 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSP-------KGKELKAMMERGELVPLEVVLALL   97 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCH-------HHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCc-------hHHHHHHHHhcCCCCCHHHHHHHH
Confidence            4466789999999999999999999999999999999987743322211       1111222 2223322111111111


Q ss_pred             hccccccccccCCccEEEEEecccch---h---hhhcCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460          137 KNRIGSKVIKGASSGVVIVDGTYALD---A---RLRSLLDIRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       137 ~~~~~~~~~~~~~~~vVIvEG~~l~~---~---~l~~~~D~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                      ..+...   ......-+|+||.---.   .   ......|.+|+++++.++...|...|..
T Consensus        98 ~~~l~~---~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~  155 (217)
T 3umf_A           98 KEAMIK---LVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAE  155 (217)
T ss_dssp             HHHHHH---HTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC--
T ss_pred             HHHHhh---ccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccc
Confidence            111100   01223468999952111   1   1223468999999999999988877753

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=98.38  E-value=5.2e-07  Score=92.58  Aligned_cols=116  Identities=13%  Similarity=0.053  Sum_probs=68.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK  143 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~  143 (818)
                      +|+|.|++||||||+|+.|++.+|..++++|++.+.....+.+  + -..+.+.+   ..|..+  |  +......+...
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~--~-g~~i~~~~---~~g~~~--~--~~~~~~~i~~~   71 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTE--L-GKKAKEFI---DRGDLV--P--DDITIPMVLET   71 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCH--H-HHHHHHHH---TTTCCC--C--HHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCH--H-HHHHHHHH---HcCCcC--c--HHHHHHHHHHH
Confidence            6899999999999999999999999999999986643211111  0 01112221   122211  0  01111111110


Q ss_pred             ccccCCccEEEEEecccc-h--hhh-------hcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          144 VIKGASSGVVIVDGTYAL-D--ARL-------RSLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       144 ~~~~~~~~vVIvEG~~l~-~--~~l-------~~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                      ..... ...+|+||.... .  ..+       ....|.+||+++|.+..++|...|.
T Consensus        72 l~~~~-g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~  127 (223)
T 2xb4_A           72 LESKG-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR  127 (223)
T ss_dssp             HHHHC-TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred             Hhccc-CCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence            10111 346889984321 1  111       1347899999999999999988875

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.38  E-value=5.7e-07  Score=90.79  Aligned_cols=132  Identities=16%  Similarity=0.127  Sum_probs=67.8

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCC-cccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGC-EVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL  593 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~-~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~  593 (818)
                      ..+.+|+|+|||||||||+++.|++.++. ...+..+.-+.....+.+-.+..-.+.+.+.+   .+.+|.-+....+..
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~   86 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFER---KLKEGQFLEFDKYAN   86 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHH---HHHTTCEEEEEEETT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHH---HHHcCCCEEeHHhCC
Confidence            45678899999999999999999998752 22222221111111111100111122333332   233455555444432


Q ss_pred             cccccCCCcceeeecCCcEEEEEecccchHhhhhcC---C-EEEEEE-cChhHHHHHHHhc
Q 003460          594 ETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSL---D-LWIAVV-GGVHSHLISRVQR  649 (818)
Q Consensus       594 ~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~---D-~~I~v~-~~~d~rl~Rri~R  649 (818)
                      ...................+|+++.......++..+   + ..||++ ++.+....|...|
T Consensus        87 ~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R  147 (204)
T 2qor_A           87 NFYGTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNR  147 (204)
T ss_dssp             EEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTC
T ss_pred             CeecCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHc
Confidence            211110000001123457889987554444555554   3 789998 7777777766554

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=98.37  E-value=4.4e-07  Score=92.24  Aligned_cols=117  Identities=14%  Similarity=0.032  Sum_probs=65.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK  143 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~  143 (818)
                      .|+|+|++||||||+|+.|++.+|..++++|++.+.....+.+..-.   +.+.+.   .+..+....+.........  
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~---i~~~~~---~g~~~~~~~~~~~i~~~l~--   73 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQ---AKDIMD---AGKLVTDELVIALVKERIA--   73 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGG---GHHHHH---HTCCCCHHHHHHHHHHHHT--
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHH---HHHHHH---CCCcCCHHHHHHHHHHHHh--
Confidence            58999999999999999999999999999999866421111111000   111111   1111000000000000000  


Q ss_pred             ccccCCccEEEEEecccch---hhhh---cCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          144 VIKGASSGVVIVDGTYALD---ARLR---SLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       144 ~~~~~~~~vVIvEG~~l~~---~~l~---~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                        .......+|++|.-...   ..+.   ...|.+||++++.+.+++|...|.
T Consensus        74 --~~~~~~~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~  124 (214)
T 1e4v_A           74 --QEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRR  124 (214)
T ss_dssp             --SGGGGGCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred             --ccccCCCEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCc
Confidence              00112347788842111   1222   246999999999999999988775

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=98.35  E-value=7.7e-07  Score=87.52  Aligned_cols=31  Identities=29%  Similarity=0.390  Sum_probs=24.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEE
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLI   91 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI   91 (818)
                      ++.+|.|+|++||||||+|+.|++.+|..++
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i   34 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV   34 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence            4578999999999999999999999998887

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.34  E-value=2.6e-06  Score=85.60  Aligned_cols=42  Identities=31%  Similarity=0.445  Sum_probs=35.5

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHh---CCe--EEeccceeccc
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVI---GCT--LISMENYRVGV  100 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~L---g~~--vI~~D~~~~~~  100 (818)
                      .....+|+|+|++||||||+++.|+..+   |..  .++.|++...+
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~   68 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGL   68 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHh
Confidence            4567899999999999999999999988   655  78888876544

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.32  E-value=5.1e-07  Score=91.03  Aligned_cols=36  Identities=14%  Similarity=0.148  Sum_probs=29.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY   96 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~   96 (818)
                      .+.+|+|+|++||||||+|+.|++.++...++.|.+
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~   44 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHL   44 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence            457899999999999999999999987665666443

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.32  E-value=4.5e-08  Score=101.09  Aligned_cols=169  Identities=15%  Similarity=0.070  Sum_probs=91.0

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhC-Ccccccccccch----hhhhcccCCCcccc----cHHHHHHHHHHH-----
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-CEVVSLESYFKS----EQVKDFKYDDFSSL----DLSLLSKNISDI-----  580 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg-~~vis~Ddfy~~----~~~~~~~~d~p~t~----D~~ll~~~L~~L-----  580 (818)
                      .+..+|+|.|++||||||+++.|+..-| +.+...+.....    .......+..+..+    ....+...+...     
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i   97 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTN   97 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGTTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhccCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHHHHHHHHhccc
Confidence            4568999999999999999999987622 112222211100    00000000111110    011111122222     


Q ss_pred             ----hcCCceecccccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccC
Q 003460          581 ----RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMG  655 (818)
Q Consensus       581 ----~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg  655 (818)
                          ..|..+..++|.++...+...    ...+..+.++++|+.+. +......|++||+++|.++++.|...|+...  
T Consensus        98 ~~~l~~~r~v~~dry~~s~~ayq~~----~l~~~~~~~~~~~~~~~~~~~~~~pD~vi~Ld~~~e~~~~Ri~~R~r~~--  171 (230)
T 2vp4_A           98 KKLKIMERSIFSARYCFVENMRRNG----SLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSE--  171 (230)
T ss_dssp             SSEEEEESCHHHHHHTHHHHHHHHT----SSCHHHHHHHHHHHHHHHHHBCCCCSEEEEEECCHHHHHHHHHHHCCGG--
T ss_pred             cCceeecCCccccHHHHHHHHHHcC----CCChHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCHHHHHHHHHHcCCcc--
Confidence                223455666677765332210    01233566777777643 3345568999999999999999987764210  


Q ss_pred             cccchhhHHHhhcchhhhhcccc--CCccc-EEEeCC
Q 003460          656 CFMSQNDIMMTVFPMFQQHIEPH--LVHAH-LKIRND  689 (818)
Q Consensus       656 ~~~~~~~~~~~v~p~~~~~I~p~--~~~AD-ivI~n~  689 (818)
                      ...+..+|...++..|.++...+  ...++ ++|+++
T Consensus       172 e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~  208 (230)
T 2vp4_A          172 ESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDAD  208 (230)
T ss_dssp             GTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECC
T ss_pred             cccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECC
Confidence            11111256777888888876433  33444 677765

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.31  E-value=1.1e-06  Score=87.15  Aligned_cols=40  Identities=28%  Similarity=0.348  Sum_probs=35.9

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHH-hCCcccccccccch
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANI-VGCEVVSLESYFKS  554 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~-lg~~vis~Ddfy~~  554 (818)
                      .++.+|+|+|++||||||+++.|++. +|+.++++|++...
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~   48 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKE   48 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHH
Confidence            34568999999999999999999999 79999999998765

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=98.30  E-value=9.8e-07  Score=91.04  Aligned_cols=120  Identities=17%  Similarity=0.088  Sum_probs=68.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhh-cCCccccccchhhhhc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLT-EGKDTLIPMFDYQQKN  138 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~-~~~~i~~p~~d~~~~~  138 (818)
                      ..+..|.|.|++||||||+|+.|++.+|+.++++|++.+.....+.+       +.+.+..+. .+..+.-.........
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~-------~g~~i~~~~~~g~~~~~~~~~~~i~~   86 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSE-------LGKKLKATMDAGKLVSDEMVLELIEK   86 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCH-------HHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCh-------hHHHHHHHHHCCCcCCHHHHHHHHHH
Confidence            45678999999999999999999999999999999876532111100       111111111 1211100000000111


Q ss_pred             cccccccccCCccEEEEEeccc-c------hhhhh---cCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          139 RIGSKVIKGASSGVVIVDGTYA-L------DARLR---SLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       139 ~~~~~~~~~~~~~vVIvEG~~l-~------~~~l~---~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                      ...    .......+|++|... .      ...+.   ...|.+||++++.+..+.|...|.
T Consensus        87 ~l~----~~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~  144 (233)
T 1ak2_A           87 NLE----TPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRL  144 (233)
T ss_dssp             HHT----SGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCE
T ss_pred             HHh----cccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence            110    001123478898321 1      11111   247999999999999999988774

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=98.30  E-value=2.1e-07  Score=95.98  Aligned_cols=38  Identities=21%  Similarity=0.222  Sum_probs=33.7

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK  553 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~  553 (818)
                      ...+|+|+|++||||||+++.|++.+|+.+++.|.+..
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~   50 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKL   50 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHH
Confidence            46799999999999999999999999999999666544

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=98.30  E-value=1.3e-06  Score=89.15  Aligned_cols=40  Identities=18%  Similarity=0.290  Sum_probs=36.2

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      +++.+|.|.|++||||||+|+.|++.++..++++|++.+.
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~   41 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRS   41 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHH
Confidence            3567899999999999999999999999999999999875

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.29  E-value=1.1e-06  Score=88.03  Aligned_cols=127  Identities=13%  Similarity=0.129  Sum_probs=57.7

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCC-cccccccccchhhh-----hcccCCCcccccHHHHHHHHHHHhcCCceecc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGC-EVVSLESYFKSEQV-----KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVP  589 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~-~vis~Ddfy~~~~~-----~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P  589 (818)
                      ...+|+|.||+||||||+++.|+..+.. .-++..+..+....     ..+.+.     +.+.+..   ....|..+..+
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~   76 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFK-----TRDAFEA---LIKDDQFIEYA   76 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEEC-----CHHHHHH---HHHTTCEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEc-----CHHHHHH---HHHcCCeEEEE
Confidence            4568999999999999999999986621 11111111111000     011111     1222222   13445555555


Q ss_pred             cccccccccCCCcceeeecCCcEEEEEecccchHhhhhcC-C-EEEEEE-cChhHHHHHHHhcC
Q 003460          590 IFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSL-D-LWIAVV-GGVHSHLISRVQRD  650 (818)
Q Consensus       590 ~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~-D-~~I~v~-~~~d~rl~Rri~Rd  650 (818)
                      .+.....................+|+|+.+.+...+...+ | ..+++. ++.+....|...|+
T Consensus        77 ~~~~~~~g~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~  140 (207)
T 2j41_A           77 EYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVGRG  140 (207)
T ss_dssp             EETTEEEEEEHHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC------------
T ss_pred             eECCeecCCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhcC
Confidence            5543211100000011122357899999887766676666 7 455554 34567777776664

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=98.29  E-value=1.4e-06  Score=86.34  Aligned_cols=32  Identities=31%  Similarity=0.459  Sum_probs=29.6

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHh---CCccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIV---GCEVVSLES  550 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~l---g~~vis~Dd  550 (818)
                      +|+|+|++||||||+|+.|++.+   |..++++|.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~   36 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE   36 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            68999999999999999999988   888998875

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=98.29  E-value=1e-06  Score=91.01  Aligned_cols=120  Identities=14%  Similarity=0.078  Sum_probs=71.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhh-hcCCccccccchhhhhcc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKNR  139 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l-~~~~~i~~p~~d~~~~~~  139 (818)
                      ..+.+||.|++||||||+|+.|++.+|+.+|+++++.+.....+.+       +-+.+..+ ..|..+.-.........+
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~-------lG~~i~~~~~~G~lvpdei~~~ll~~~   79 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTP-------LGVEAKTYMDEGKLVPDSLIIGLVKER   79 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCH-------HHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCCh-------HHHHHHHHHhhccccccHHHHHHHHHH
Confidence            3467899999999999999999999999999999987643222111       11222221 123221111111111111


Q ss_pred             ccccccccCCccEEEEEecccc-h--hhhh---cCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460          140 IGSKVIKGASSGVVIVDGTYAL-D--ARLR---SLLDIRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       140 ~~~~~~~~~~~~vVIvEG~~l~-~--~~l~---~~~D~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                      ...    .....-+|+||.--- .  ..+.   ...|.+|++++|.++.+.|...|..
T Consensus        80 l~~----~~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~  133 (230)
T 3gmt_A           80 LKE----ADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRT  133 (230)
T ss_dssp             HHS----GGGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEE
T ss_pred             HhC----cccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCc
Confidence            111    111224788996221 1  2222   2479999999999999999998863

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=98.28  E-value=2.4e-07  Score=94.66  Aligned_cols=40  Identities=23%  Similarity=0.216  Sum_probs=36.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG   99 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~   99 (818)
                      +.+.+|.|.|++||||||+|+.|++.+|..++++|++.+.
T Consensus         3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~   42 (222)
T 1zak_A            3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRA   42 (222)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHH
Confidence            3567899999999999999999999999999999998664

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.27  E-value=2.9e-06  Score=83.46  Aligned_cols=35  Identities=29%  Similarity=0.414  Sum_probs=29.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh---CCeEEeccc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI---GCTLISMEN   95 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L---g~~vI~~D~   95 (818)
                      +..+|+|+|++||||||+++.|++.+   |.+++++|.
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~   41 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG   41 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence            35689999999999999999999988   877775543

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.27  E-value=1.9e-06  Score=85.38  Aligned_cols=40  Identities=28%  Similarity=0.380  Sum_probs=32.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceecc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVG   99 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~   99 (818)
                      ....+|+|+|++||||||+++.|++.++     +.+++.|.+...
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~   55 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTT   55 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTT
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHH
Confidence            3468899999999999999999999884     356787877443

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=98.27  E-value=1.3e-06  Score=86.12  Aligned_cols=39  Identities=26%  Similarity=0.398  Sum_probs=35.5

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      .+.+|+|+|++||||||+++.|++.+|..++++|++.+.
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~   41 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRD   41 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence            456899999999999999999999999999999988764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=98.26  E-value=1.2e-07  Score=101.72  Aligned_cols=172  Identities=17%  Similarity=0.189  Sum_probs=89.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--ecccccCCC-CCcccHHHHHHHHHhhhcCCccccccchhhh
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGND-LDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ  136 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~~-~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~  136 (818)
                      ..+.+|.|+||+||||||||..|++.++..+|+.|++  |+++.-... |..-+.+....+|-+...-.+ .+..-++..
T Consensus         8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e-~~s~~~f~~   86 (316)
T 3foz_A            8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQ-AYSAADFRR   86 (316)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTS-CCCHHHHHH
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccc-cccHHHHHH
Confidence            3467899999999999999999999999999999995  887654432 221121111111111111111 001111211


Q ss_pred             hccccccccccCCccEEEEEecccchhhhhcCC-CEEEEEEcCHHHHHHHHHHhccCCC--cCHHHHHHhhchhhhhccC
Q 003460          137 KNRIGSKVIKGASSGVVIVDGTYALDARLRSLL-DIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDSIFPLFRKHIE  213 (818)
Q Consensus       137 ~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~-D~~I~Vda~~e~~l~Rri~Rd~~~~--~s~e~~~~~~~p~~~~~Ie  213 (818)
                      ........+......+|+|.|.+++...+..-+ +..   .++.+.+  ..+.......  ..+.+.+..+.|.....  
T Consensus        87 ~a~~~i~~i~~~g~~pilVGGTglYi~all~gl~~~p---~~~~~~R--~~l~~~~~~~g~~~l~~~L~~~DP~~A~r--  159 (316)
T 3foz_A           87 DALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLP---SADPEVR--ARIEQQAAEQGWESLHRQLQEVDPVAAAR--  159 (316)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESCHHHHHHHHSCCCCCC---CCCHHHH--HHHHHHHHHHHHHHHHHHHHHHCHHHHHH--
T ss_pred             HHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCcCCCC---CCCHHHH--HHHHHHHHhcCHHHHHHHHHHhCHHHHhh--
Confidence            111111112233445689999999876655322 221   2344432  2221111000  12223333445554443  


Q ss_pred             CccccCcEEEECCCCCChhhhhhcccCccc-CCccccccccc
Q 003460          214 PDLHHAQIRINNRFVSSFREAIYKLKCRSE-APGACSISAFQ  254 (818)
Q Consensus       214 p~~~~ADiII~N~~~~~~~~~~~~l~~~~~-~l~~~~~~~~~  254 (818)
                              |-.||       ++.++++++. ..+|+..+.+.
T Consensus       160 --------i~pnd-------~~Ri~RALEV~~~TG~~~S~~~  186 (316)
T 3foz_A          160 --------IHPND-------PQRLSRALEVFFISGKTLTELT  186 (316)
T ss_dssp             --------SCTTC-------HHHHHHHHHHHHHHSSCHHHHH
T ss_pred             --------CCCcc-------HHHHHHHHHHHHHHCCCHHHHh
Confidence                    33467       7888999887 66676655543

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=98.26  E-value=5.9e-07  Score=87.89  Aligned_cols=114  Identities=12%  Similarity=0.010  Sum_probs=65.8

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHH-HhCCcccccccccchhhhhcccCCCcccccH---HHHHHHHHHHhcCCceeccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMAN-IVGCEVVSLESYFKSEQVKDFKYDDFSSLDL---SLLSKNISDIRNGRRTKVPIFD  592 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~-~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~---~ll~~~L~~L~~g~~v~~P~yD  592 (818)
                      |.+|.|.|++||||||+|+.|++ .++..++++|.+..........+  ...++.   ..+.+.+..+..      +   
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~---   70 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERD--EYKYTKKKEGIVTGMQFDTAK------S---   70 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGG--GCCCCHHHHHHHHHHHHHHHH------H---
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhCCCccc--hhhhchhhhhHHHHHHHHHHH------H---
Confidence            57899999999999999999999 68889999987654311100010  001111   111111111100      0   


Q ss_pred             ccccccCCCcceeeecCCcEEEEEecccch---Hhhhhc-----CC-EEEEEEcChhHHHHHHHhcCc
Q 003460          593 LETGARSGFKELEVSEDCGVIIFEGVYALH---PEIRKS-----LD-LWIAVVGGVHSHLISRVQRDK  651 (818)
Q Consensus       593 ~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~l~~~-----~D-~~I~v~~~~d~rl~Rri~Rd~  651 (818)
                                ..........+|++|.....   ..+.+.     .+ ..||++++.++.+.|...|..
T Consensus        71 ----------~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~  128 (181)
T 1ly1_A           71 ----------ILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT  128 (181)
T ss_dssp             ----------HHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG
T ss_pred             ----------HHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcccc
Confidence                      00000223578888876532   223221     22 689999999999999887753

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=98.26  E-value=7.1e-08  Score=103.66  Aligned_cols=42  Identities=33%  Similarity=0.394  Sum_probs=37.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--ecccccC
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEG  103 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~  103 (818)
                      +.+|+|+||+||||||||..|++.++..+|++|++  |+++.-.
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~ig   46 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIG   46 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeec
Confidence            46899999999999999999999999999999997  8876543

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=98.26  E-value=2.1e-06  Score=84.84  Aligned_cols=36  Identities=19%  Similarity=0.382  Sum_probs=31.0

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccc
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK  553 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~  553 (818)
                      .+|.|.|++||||||+|+.|++.++     +.+++.|++..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~   42 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFML   42 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHH
Confidence            4789999999999999999999987     66777777764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.24  E-value=4.1e-06  Score=83.83  Aligned_cols=26  Identities=35%  Similarity=0.551  Sum_probs=23.3

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      ..+|||.||+||||||+++.|+..+.
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            45899999999999999999998764

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.24  E-value=3.6e-07  Score=99.30  Aligned_cols=43  Identities=23%  Similarity=0.306  Sum_probs=37.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--eccccc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDE  102 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~  102 (818)
                      .++.+|.|+||+||||||||..||+.+|..+||+|++  |+++.-
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdI   82 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDI   82 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTT
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceee
Confidence            3456899999999999999999999999999999996  776543

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.24  E-value=1.6e-06  Score=93.80  Aligned_cols=40  Identities=38%  Similarity=0.579  Sum_probs=35.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--ecccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVD  101 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~  101 (818)
                      +.+|.|+||+||||||+|..|++.+|+.+|++|++  |+++.
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~   46 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMD   46 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCC
Confidence            35899999999999999999999999999999996  65544

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.23  E-value=3e-06  Score=85.08  Aligned_cols=27  Identities=37%  Similarity=0.372  Sum_probs=25.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGC   88 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~   88 (818)
                      +.+|+|.|++||||||+|+.|++.++.
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            468999999999999999999999876

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=98.23  E-value=1.9e-06  Score=88.33  Aligned_cols=40  Identities=18%  Similarity=0.248  Sum_probs=35.7

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      .++.+|.|.|++||||||+|+.|++.+|..++++|+++..
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~   44 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRD   44 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHH
Confidence            3567899999999999999999999999999999998875

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.23  E-value=2.3e-06  Score=86.80  Aligned_cols=42  Identities=29%  Similarity=0.351  Sum_probs=34.4

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHhC------CeEEeccceeccc
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG------CTLISMENYRVGV  100 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg------~~vI~~D~~~~~~  100 (818)
                      .....+|.|.|++||||||+++.|++.++      +.+++.|.+...+
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l   69 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGL   69 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhh
Confidence            34567899999999999999999999886      6778877775433

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=98.21  E-value=2.4e-06  Score=91.19  Aligned_cols=114  Identities=15%  Similarity=0.047  Sum_probs=67.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh-CCeEEeccceecccccC--CCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGVDEG--NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN  138 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L-g~~vI~~D~~~~~~~~~--~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~  138 (818)
                      +.+|.|+|++||||||+|+.|++.+ |+.+|++|.++..+...  +....++... ...+..+              ...
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~~~~g~~~~~~~~~-~~~~~~~--------------~~~   66 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKK-EGIVTGM--------------QFD   66 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCCC---CCHHH-HHHHHHH--------------HHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhccCCcccccccchhh-hhHHHHH--------------HHH
Confidence            3689999999999999999999874 89999999775533221  1001122110 0000000              000


Q ss_pred             cccccccc-cCCccEEEEEecccch---hhhhc------CCCEEEEEEcCHHHHHHHHHHhcc
Q 003460          139 RIGSKVIK-GASSGVVIVDGTYALD---ARLRS------LLDIRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       139 ~~~~~~~~-~~~~~vVIvEG~~l~~---~~l~~------~~D~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                      ... ..+. ......+|+||.....   ..+..      .-+..||++++.++.++|...|..
T Consensus        67 ~~~-~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~  128 (301)
T 1ltq_A           67 TAK-SILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT  128 (301)
T ss_dssp             HHH-HHTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGG
T ss_pred             HHH-HHHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccC
Confidence            000 0010 0234578999977543   22221      123789999999999999988864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=98.21  E-value=2.3e-06  Score=87.20  Aligned_cols=40  Identities=18%  Similarity=0.166  Sum_probs=35.9

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE  555 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~  555 (818)
                      +...|.|.|++||||||+|+.|++.+|..++++|++.+..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~   43 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREA   43 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHH
Confidence            3467899999999999999999999999999999988753

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.18  E-value=7.2e-07  Score=91.97  Aligned_cols=62  Identities=5%  Similarity=0.044  Sum_probs=41.1

Q ss_pred             hhcCCCEEEEEEcCHHHHHHHHHHhccCCCc-CHHHHHHhhchhhhhccCCc--cccCc-EEEECC
Q 003460          165 LRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLIDSIFPLFRKHIEPD--LHHAQ-IRINNR  226 (818)
Q Consensus       165 l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~-s~e~~~~~~~p~~~~~Iep~--~~~AD-iII~N~  226 (818)
                      .....|++|||++|++++++|...|+..... ...++.+++...|..+++.+  ...++ ++|+++
T Consensus       143 ~~~~pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~  208 (230)
T 2vp4_A          143 IHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDAD  208 (230)
T ss_dssp             BCCCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECC
T ss_pred             hcCCCCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECC
Confidence            3456899999999999999998887532111 11245666667777765332  34454 777776

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=98.18  E-value=4.5e-06  Score=87.72  Aligned_cols=105  Identities=11%  Similarity=0.140  Sum_probs=63.1

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHH---hCCccc--ccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANI---VGCEVV--SLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPI  590 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~---lg~~vi--s~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~  590 (818)
                      ++.+|.|+|++||||||+|+.|++.   .|..++  +.|.+....  .  +|+..+   ...+........         
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l--~--~~~~~~---e~~~~~~~~~~i---------   66 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESF--P--VWKEKY---EEFIKKSTYRLI---------   66 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTS--S--SCCGGG---HHHHHHHHHHHH---------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHH--h--hhhHHH---HHHHHHHHHHHH---------
Confidence            4678999999999999999999997   577666  777764321  0  121111   111111111000         


Q ss_pred             ccccccccCCCcceeeecCCcEEEEEecccch---Hhhhhc------CCEEEEEEcChhHHHHHHHhcC
Q 003460          591 FDLETGARSGFKELEVSEDCGVIIFEGVYALH---PEIRKS------LDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       591 yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~l~~~------~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                                   ...... ..+|++|.....   ..+...      .+..||++++.++++.|...|.
T Consensus        67 -------------~~~l~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~  121 (260)
T 3a4m_A           67 -------------DSALKN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG  121 (260)
T ss_dssp             -------------HHHHTT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT
T ss_pred             -------------HHHhhC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC
Confidence                         000112 578888855432   223222      3689999999999999987764

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=98.17  E-value=3.8e-06  Score=86.07  Aligned_cols=116  Identities=15%  Similarity=0.044  Sum_probs=66.3

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR  598 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r  598 (818)
                      +|.|.|++||||||+|+.|++.+|..++++|++.+..-..    +.+   .-..+.+.   +..|+.+  |.  ......
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~----~~~---~g~~i~~~---~~~g~~~--~~--~~~~~~   67 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGG----GTE---LGKKAKEF---IDRGDLV--PD--DITIPM   67 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTT----TCH---HHHHHHHH---HTTTCCC--CH--HHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHc----CCH---HHHHHHHH---HHcCCcC--cH--HHHHHH
Confidence            6889999999999999999999999999999988752100    000   00111111   1122211  00  000000


Q ss_pred             CCCcceeeecCCcEEEEEecccch---Hhhh-------hcCCEEEEEEcChhHHHHHHHhcC
Q 003460          599 SGFKELEVSEDCGVIIFEGVYALH---PEIR-------KSLDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       599 ~~~~~~~~~~~~~vvIvEG~~~~~---~~l~-------~~~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                      .. ....... ...+|++|.-...   ..+.       ...|..||++++.+..+.|...|.
T Consensus        68 i~-~~l~~~~-g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~  127 (223)
T 2xb4_A           68 VL-ETLESKG-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR  127 (223)
T ss_dssp             HH-HHHHHHC-TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred             HH-HHHhccc-CCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence            00 0000001 3578889843321   1121       236899999999999999988875

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.17  E-value=3.5e-06  Score=84.85  Aligned_cols=36  Identities=14%  Similarity=0.183  Sum_probs=30.9

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY  551 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf  551 (818)
                      ++.+|+|+|++||||||+++.|++.++...++.|.+
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~   44 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHL   44 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence            567899999999999999999999988767777543

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.17  E-value=2.2e-06  Score=84.37  Aligned_cols=105  Identities=16%  Similarity=0.230  Sum_probs=64.2

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhh-cccCCCc-ccccHHHHHHHHHH-HhcCCceeccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK-DFKYDDF-SSLDLSLLSKNISD-IRNGRRTKVPIFD  592 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~-~~~~d~p-~t~D~~ll~~~L~~-L~~g~~v~~P~yD  592 (818)
                      .+.+|.|+|++||||||+++.|++.+|..++++|++....... .+..... ...+.+.+.+.+.. +..|..+      
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v------   83 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGGVI------   83 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHHHHHHHHCCEE------
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHHHHHHhcCCEE------
Confidence            3456789999999999999999999999999999987653211 1110000 11233334443332 2222211      


Q ss_pred             ccccccCCCcceeeecCCcEEEEEeccc-chHhhhhcCCEEEEEEcChhHHHHHHHhcC
Q 003460          593 LETGARSGFKELEVSEDCGVIIFEGVYA-LHPEIRKSLDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       593 ~~~~~r~~~~~~~~~~~~~vvIvEG~~~-~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                                            +++... +.+  ....|..||++++.++.+.|...|.
T Consensus        84 ----------------------v~~~~~~~~~--~~~~~~vi~L~~~~e~l~~R~~~r~  118 (180)
T 3iij_A           84 ----------------------VDYHGCDFFP--ERWFHIVFVLRTDTNVLYERLETRG  118 (180)
T ss_dssp             ----------------------EECSCCTTSC--GGGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             ----------------------EEechhhhcc--hhcCCEEEEEECCHHHHHHHHHHcC
Confidence                                  121111 111  1236899999999999999988774

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.17  E-value=3e-06  Score=87.11  Aligned_cols=27  Identities=37%  Similarity=0.457  Sum_probs=16.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH-HHhCC
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLA-SVIGC   88 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La-~~Lg~   88 (818)
                      ..+|||+||+||||||+++.|+ ..+..
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~~   54 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQKNN   54 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC----C
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence            4589999999999999999999 76643

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.15  E-value=8.2e-07  Score=87.13  Aligned_cols=36  Identities=22%  Similarity=0.246  Sum_probs=33.4

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      +|.|+|++||||||+|+.|++.+|+.+++.|+++..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~   41 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQ   41 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHH
Confidence            588999999999999999999999999999998764

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.15  E-value=4.7e-06  Score=83.97  Aligned_cols=28  Identities=18%  Similarity=0.265  Sum_probs=25.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGC   88 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~   88 (818)
                      ++.+|+|+|++||||||+|+.|++.++.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~   35 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALCA   35 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4578999999999999999999998753

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.14  E-value=4.9e-06  Score=93.60  Aligned_cols=94  Identities=15%  Similarity=0.128  Sum_probs=64.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKN  138 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~  138 (818)
                      ..+.+|.|+|++||||||+|+.|++.+|+.+|+.|.+.            .+..+.+.+.. +..               
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------~~~~~~~~~~~~l~~---------------  308 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG------------SWQRCVSSCQAALRQ---------------  308 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC------------SHHHHHHHHHHHHHT---------------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH------------HHHHHHHHHHHHHhc---------------
Confidence            45688999999999999999999999999999999972            11222222111 111               


Q ss_pred             cccccccccCCccEEEEEecccch---hhhh------cCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460          139 RIGSKVIKGASSGVVIVDGTYALD---ARLR------SLLDIRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       139 ~~~~~~~~~~~~~vVIvEG~~l~~---~~l~------~~~D~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                                 ...+|+|+.....   ..+.      ...-..||++++.+++++|...|..
T Consensus       309 -----------g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~  359 (416)
T 3zvl_A          309 -----------GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREM  359 (416)
T ss_dssp             -----------TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred             -----------CCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcc
Confidence                       1236777775433   1111      1223679999999999999988875

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.14  E-value=1.6e-06  Score=88.01  Aligned_cols=28  Identities=25%  Similarity=0.324  Sum_probs=24.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      ++..+|+|+||+||||||+++.|+..++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4457899999999999999999998775

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=98.12  E-value=4.7e-06  Score=84.57  Aligned_cols=36  Identities=17%  Similarity=0.195  Sum_probs=33.6

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      .|+|.|++||||||+|+.|++.+|..++++|++.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~   37 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRA   37 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHH
Confidence            478999999999999999999999999999998875

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=98.11  E-value=2.2e-06  Score=87.14  Aligned_cols=113  Identities=18%  Similarity=0.102  Sum_probs=67.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRIGS  142 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~~~~~  142 (818)
                      +|.|.||+||||+|.|+.|++.+|+++|+++++.+.......+       +-..+.. +..|+-+.-.........+.  
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~-------lg~~~~~~~~~G~lvpd~iv~~lv~~~l--   72 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTP-------LGKKAKEYMERGELVPDDLIIALIEEVF--   72 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCH-------HHHHHHHHHHHTCCCCHHHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcCh-------hhhhHHHHHhcCCcCCHHHHHHHHHHhh--
Confidence            6789999999999999999999999999999987642211110       1111111 12232211111111111111  


Q ss_pred             cccccCCccEEEEEecccch-------hhh---hcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          143 KVIKGASSGVVIVDGTYALD-------ARL---RSLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       143 ~~~~~~~~~vVIvEG~~l~~-------~~l---~~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                           ....-+|+||.=--.       ..+   .-..|.+|+++++.++.+.|...|.
T Consensus        73 -----~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~  125 (206)
T 3sr0_A           73 -----PKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRR  125 (206)
T ss_dssp             -----CSSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             -----ccCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCc
Confidence                 112248899962211       111   1246899999999999999998885

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.10  E-value=9.3e-06  Score=85.03  Aligned_cols=35  Identities=37%  Similarity=0.478  Sum_probs=32.7

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCccccccccc
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF  552 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy  552 (818)
                      .+|.|+||+||||||+|+.|+..++..++++|++.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~   36 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ   36 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence            47899999999999999999999999999999974

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=98.08  E-value=1.7e-06  Score=88.40  Aligned_cols=40  Identities=20%  Similarity=0.252  Sum_probs=36.4

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      .++.+|.|.|++||||||+++.|++.++...+++|++++.
T Consensus         3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~   42 (222)
T 1zak_A            3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRA   42 (222)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHH
Confidence            3567889999999999999999999999999999998875

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=98.08  E-value=2.4e-06  Score=99.36  Aligned_cols=118  Identities=21%  Similarity=0.274  Sum_probs=69.2

Q ss_pred             HHHHHHHHHH-hcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceecccccCCCCCcccHHHHHHHHHhh
Q 003460           48 LVKSIQELRE-KKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL  121 (818)
Q Consensus        48 l~~~i~~~~~-~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l  121 (818)
                      +.+.+..... +...+.+|.++|++||||||+|+.|++.++     +.+++.|.+.+.+....   .|....-...+..+
T Consensus       357 V~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~---~f~~~er~~~l~~i  433 (546)
T 2gks_A          357 VAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGL---GFSKEDRITNILRV  433 (546)
T ss_dssp             HHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTC---CSSHHHHHHHHHHH
T ss_pred             HHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccc---cccHHHHHHHHHHH
Confidence            4444444332 223468899999999999999999999886     47888888755442211   11111111111111


Q ss_pred             hcCCccccccchhhhhccccccccccCCccEEEEEecccch---hhhhcCC---C-EEEEEEcCHHHHHHHH
Q 003460          122 TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSLL---D-IRVAVVGGVHFSLISK  186 (818)
Q Consensus       122 ~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~~---D-~~I~Vda~~e~~l~Rr  186 (818)
                      ..                ......  .....||+++..++.   ..++..+   | ..|||+++.+++.+|.
T Consensus       434 ~~----------------~~~~~l--~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl  487 (546)
T 2gks_A          434 GF----------------VASEIV--KHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERD  487 (546)
T ss_dssp             HH----------------HHHHHH--HTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHC
T ss_pred             HH----------------HHHHHH--hCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHh
Confidence            00                000011  123478899877654   2334443   7 8899999999987774

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.06  E-value=4.5e-06  Score=89.21  Aligned_cols=40  Identities=25%  Similarity=0.390  Sum_probs=35.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh--CCeEEeccceecc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI--GCTLISMENYRVG   99 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L--g~~vI~~D~~~~~   99 (818)
                      ..+.+|.|+|+|||||||+|+.|++.+  +..+||+|.++..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~   72 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQ   72 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHh
Confidence            457899999999999999999999988  7889999988653

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=98.06  E-value=1.1e-05  Score=82.70  Aligned_cols=124  Identities=10%  Similarity=0.026  Sum_probs=72.2

Q ss_pred             cCCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccc
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFD  592 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD  592 (818)
                      +..++.||.|.||+||||||.|+.|++.+|...||+.|.++.+-...       +   ++..+.-.-+.+|+-+.--...
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~-------t---~lg~~~~~~~~~G~lVpde~~~   94 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSG-------S---PKGKELKAMMERGELVPLEVVL   94 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTC-------C---HHHHHHHHHHHHTCCCCHHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcC-------C---chHHHHHHHHhcCCCCCHHHHH
Confidence            44678899999999999999999999999999999999987532110       0   0111111112233322111100


Q ss_pred             ccccccCCCcceeeecCCcEEEEEecccch---Hhhh---hcCCEEEEEEcChhHHHHHHHhcC
Q 003460          593 LETGARSGFKELEVSEDCGVIIFEGVYALH---PEIR---KSLDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       593 ~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~l~---~~~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                      ....++.    ........-+|++|.=--.   ..+.   ...|..|+++++.++...|...|.
T Consensus        95 ~lv~~~l----~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~  154 (217)
T 3umf_A           95 ALLKEAM----IKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRA  154 (217)
T ss_dssp             HHHHHHH----HHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC-
T ss_pred             HHHHHHH----hhccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhccc
Confidence            0000000    0001122457888853211   1122   236799999999999998887774

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=98.03  E-value=8.4e-06  Score=83.98  Aligned_cols=40  Identities=23%  Similarity=0.248  Sum_probs=36.2

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      ..+..|.|.|++||||||+|+.|++.+++.++++|++.+.
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~   53 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRA   53 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHH
Confidence            3567899999999999999999999999999999998764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.03  E-value=4.7e-06  Score=87.31  Aligned_cols=37  Identities=24%  Similarity=0.346  Sum_probs=33.8

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      .+|+|+|++||||||+++.|+..+|..++++|+++..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~   85 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQ   85 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHH
Confidence            3688999999999999999999999999999998764

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=98.02  E-value=8.6e-06  Score=85.12  Aligned_cols=40  Identities=23%  Similarity=0.397  Sum_probs=34.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhC--CeEEeccceecc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIG--CTLISMENYRVG   99 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg--~~vI~~D~~~~~   99 (818)
                      ..+.+|.|+|++||||||+|+.|++.++  +.+++.|.+...
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~   71 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQ   71 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTT
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHh
Confidence            4578999999999999999999999986  678899988653

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.00  E-value=2.2e-05  Score=79.02  Aligned_cols=37  Identities=14%  Similarity=0.178  Sum_probs=29.9

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY  551 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf  551 (818)
                      .++.+|+|+|++||||||+++.|++.++...++.|.+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~   43 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL   43 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence            3577899999999999999999999886555555443

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=98.00  E-value=7e-06  Score=87.61  Aligned_cols=114  Identities=12%  Similarity=-0.021  Sum_probs=65.9

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHh-CCcccccccccchhhhhcccCCCcccccH--HH-HHHHHHHHhcCCceeccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQVKDFKYDDFSSLDL--SL-LSKNISDIRNGRRTKVPIFD  592 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~l-g~~vis~Ddfy~~~~~~~~~~d~p~t~D~--~l-l~~~L~~L~~g~~v~~P~yD  592 (818)
                      |.+|.|+|++||||||+|+.|++.+ |..++++|.+.........++  .+.++.  +. ..+.+..+..      +   
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~------~---   70 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERD--EYKYTKKKEGIVTGMQFDTAK------S---   70 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCCC-----CCHHHHHHHHHHHHHHHH------H---
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhccCCccc--ccccchhhhhHHHHHHHHHHH------H---
Confidence            5689999999999999999999975 889999996643211100011  001111  11 1111111000      0   


Q ss_pred             ccccccCCCcceeeecCCcEEEEEecccch---Hhhhhc-----C-CEEEEEEcChhHHHHHHHhcCc
Q 003460          593 LETGARSGFKELEVSEDCGVIIFEGVYALH---PEIRKS-----L-DLWIAVVGGVHSHLISRVQRDK  651 (818)
Q Consensus       593 ~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~l~~~-----~-D~~I~v~~~~d~rl~Rri~Rd~  651 (818)
                                ..........+|++|.....   ..+.+.     . +..||++++.++.+.|...|..
T Consensus        71 ----------~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~  128 (301)
T 1ltq_A           71 ----------ILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT  128 (301)
T ss_dssp             ----------HTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGG
T ss_pred             ----------HHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccC
Confidence                      00000223578899877542   223221     2 3789999999999999888763

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=98.00  E-value=1.1e-05  Score=83.19  Aligned_cols=120  Identities=12%  Similarity=0.133  Sum_probs=68.4

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHH-HhcCCceeccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDLE  594 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~-L~~g~~v~~P~yD~~  594 (818)
                      ...-.||.|++||||||+|+.|++.+|+.+||+||..+..-...       +   ++ -+.+.. +.+|+.+.-......
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~-------t---~l-G~~i~~~~~~G~lvpdei~~~l   75 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAG-------T---PL-GVEAKTYMDEGKLVPDSLIIGL   75 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTT-------C---HH-HHHHHHHHTTTCCCCHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCC-------C---hH-HHHHHHHHhhccccccHHHHHH
Confidence            34568999999999999999999999999999999987531100       0   00 011111 112221111000000


Q ss_pred             ccccCCCcceeeecCCcEEEEEecccch---Hhhhh---cCCEEEEEEcChhHHHHHHHhcCc
Q 003460          595 TGARSGFKELEVSEDCGVIIFEGVYALH---PEIRK---SLDLWIAVVGGVHSHLISRVQRDK  651 (818)
Q Consensus       595 ~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~l~~---~~D~~I~v~~~~d~rl~Rri~Rd~  651 (818)
                      ..++..     ......-+|++|.---.   ..+.+   ..|..|+++++.++.+.|...|..
T Consensus        76 l~~~l~-----~~~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~  133 (230)
T 3gmt_A           76 VKERLK-----EADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRT  133 (230)
T ss_dssp             HHHHHH-----SGGGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEE
T ss_pred             HHHHHh-----CcccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCc
Confidence            000000     00001236788853221   22332   368999999999999999998864

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.97  E-value=1.4e-05  Score=78.18  Aligned_cols=37  Identities=14%  Similarity=0.319  Sum_probs=30.7

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCccc--ccccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVV--SLESYFK  553 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vi--s~Ddfy~  553 (818)
                      +.+|.|+|+|||||||+++.|++.++...+  +.|++..
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~   41 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE   41 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence            457889999999999999999999976544  5787754

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.96  E-value=1.6e-05  Score=78.08  Aligned_cols=35  Identities=26%  Similarity=0.413  Sum_probs=30.0

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh---CCccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSLES  550 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l---g~~vis~Dd  550 (818)
                      +..+|+|+|++||||||+++.|+..+   |..++.+|.
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~   41 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG   41 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence            45789999999999999999999988   877776653

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.96  E-value=2.4e-05  Score=78.32  Aligned_cols=28  Identities=29%  Similarity=0.419  Sum_probs=25.5

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGC  543 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~  543 (818)
                      ++.+|.|.|++||||||+|+.|++.++.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            3578999999999999999999999875

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.94  E-value=6.3e-05  Score=75.40  Aligned_cols=40  Identities=23%  Similarity=0.353  Sum_probs=32.3

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHh---CCc--ccccccccc
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIV---GCE--VVSLESYFK  553 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~l---g~~--vis~Ddfy~  553 (818)
                      ..++.+|+|.|++||||||+++.|+..+   |..  .++.|++..
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~   66 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH   66 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh
Confidence            4567899999999999999999999988   544  566666643

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.93  E-value=1.3e-05  Score=81.43  Aligned_cols=114  Identities=18%  Similarity=0.150  Sum_probs=67.8

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR  598 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r  598 (818)
                      +|.|.||+||||||.|+.|++.+|...||+.|.++.+-...       +   ++..+.-.-+.+|+-+.--........+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~-------t---~lg~~~~~~~~~G~lvpd~iv~~lv~~~   71 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKG-------T---PLGKKAKEYMERGELVPDDLIIALIEEV   71 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHT-------C---HHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhc-------C---hhhhhHHHHHhcCCcCCHHHHHHHHHHh
Confidence            57789999999999999999999999999999988532110       0   0111111112233322111100000111


Q ss_pred             CCCcceeeecCCcEEEEEecccch---H----hhh---hcCCEEEEEEcChhHHHHHHHhcC
Q 003460          599 SGFKELEVSEDCGVIIFEGVYALH---P----EIR---KSLDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       599 ~~~~~~~~~~~~~vvIvEG~~~~~---~----~l~---~~~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                      .        ...+-+|++|.=--.   .    .+.   -..|..|+++++.+..+.|...|.
T Consensus        72 l--------~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~  125 (206)
T 3sr0_A           72 F--------PKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRR  125 (206)
T ss_dssp             C--------CSSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             h--------ccCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCc
Confidence            1        112337888864321   1    111   236899999999999999988885

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.91  E-value=3.1e-06  Score=93.99  Aligned_cols=41  Identities=22%  Similarity=0.310  Sum_probs=37.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc--eeccccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDE  102 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~--~~~~~~~  102 (818)
                      +.+|+|+||+||||||||..|++.++..+|++|+  +|+++.-
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i   44 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPI   44 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceeccccc
Confidence            4689999999999999999999999999999999  6887653

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.90  E-value=5.9e-05  Score=77.72  Aligned_cols=154  Identities=12%  Similarity=0.138  Sum_probs=76.8

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHhC--CeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCcccccc-----
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG--CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPM-----  131 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg--~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~-----  131 (818)
                      .....+|+|.|++||||||+++.|++.++  ..++.+..          |..-   .+.+.+..+........+.     
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~----------p~~~---~~g~~i~~~~~~~~~~~~~~~~ll   89 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE----------PGGV---PTGEEIRKIVLEGNDMDIRTEAML   89 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECT----------TTTC---HHHHHHHHHTTC---CCHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecC----------CCCC---chHHHHHHHHhCCCCCCHHHHHHH
Confidence            34568899999999999999999999986  34443321          1100   0112222211111100000     


Q ss_pred             chhhhhcccccccc-ccCCccEEEEE----------ecc--cchh---h---h---hcCCCEEEEEEcCHHHHHHHHHHh
Q 003460          132 FDYQQKNRIGSKVI-KGASSGVVIVD----------GTY--ALDA---R---L---RSLLDIRVAVVGGVHFSLISKVQY  189 (818)
Q Consensus       132 ~d~~~~~~~~~~~~-~~~~~~vVIvE----------G~~--l~~~---~---l---~~~~D~~I~Vda~~e~~l~Rri~R  189 (818)
                      +............. ......+||+|          |..  +-..   .   +   ....|++||+++|.++.+.|...|
T Consensus        90 ~~a~r~~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R  169 (229)
T 4eaq_A           90 FAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKN  169 (229)
T ss_dssp             HHHHHHHHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhc
Confidence            00000000000000 01134578888          541  1111   1   1   125699999999999999998888


Q ss_pred             ccC-CCc--CHHHHHHhhchhhhhccCCccccCcEEEECC
Q 003460          190 DIG-DSC--SLDSLIDSIFPLFRKHIEPDLHHAQIRINNR  226 (818)
Q Consensus       190 d~~-~~~--s~e~~~~~~~p~~~~~Iep~~~~ADiII~N~  226 (818)
                      ... .+.  ....+.+++...|....+.. ...-++|+++
T Consensus       170 ~~~~dr~e~~~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~  208 (229)
T 4eaq_A          170 SRDQNRLDQEDLKFHEKVIEGYQEIIHNE-SQRFKSVNAD  208 (229)
T ss_dssp             -----CCCHHHHHHHHHHHHHHHHHTTTC-TTTEEEEETT
T ss_pred             CCCccchhhhhHHHHHHHHHHHHHHHHhC-CCCEEEEeCC
Confidence            532 222  23455566666666644322 1234566765

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.90  E-value=1e-05  Score=81.94  Aligned_cols=28  Identities=21%  Similarity=0.360  Sum_probs=24.5

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      .++.+|+|.||+||||||+++.|+..++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3466899999999999999999998765

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.83  E-value=2.2e-05  Score=80.49  Aligned_cols=26  Identities=38%  Similarity=0.590  Sum_probs=16.5

Q ss_pred             CEEEeeeCCCCccHHHHHHHHH-HHhC
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMA-NIVG  542 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~-~~lg  542 (818)
                      ..+|||+||+||||||+++.|+ ..+.
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~   53 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQKN   53 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC----
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            4589999999999999999999 7664

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.82  E-value=2e-05  Score=77.79  Aligned_cols=25  Identities=12%  Similarity=0.219  Sum_probs=22.4

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      .+|+|+||||||||||++.|...+.
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4789999999999999999998653

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.77  E-value=3.9e-05  Score=75.19  Aligned_cols=31  Identities=35%  Similarity=0.459  Sum_probs=23.7

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVV  546 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vi  546 (818)
                      ++.+|.|+|++||||||+|+.|++.++..++
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i   34 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV   34 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence            4678999999999999999999999997776

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=97.77  E-value=4.8e-05  Score=88.90  Aligned_cols=41  Identities=22%  Similarity=0.253  Sum_probs=34.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhC------CeEEeccceeccc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIG------CTLISMENYRVGV  100 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg------~~vI~~D~~~~~~  100 (818)
                      ..+.+|.|+|.+||||||+|+.|++.|+      +.+++.|.+++++
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l  440 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHEL  440 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHT
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHh
Confidence            3468999999999999999999999886      3567788876654

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=97.77  E-value=3.9e-05  Score=90.06  Aligned_cols=34  Identities=29%  Similarity=0.422  Sum_probs=30.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh---CCeEEecc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI---GCTLISME   94 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L---g~~vI~~D   94 (818)
                      ++.+|.|+|.+||||||+|+.|++.|   |..++++|
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD   87 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD   87 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence            56899999999999999999999999   87776665

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=97.75  E-value=7.8e-05  Score=75.19  Aligned_cols=146  Identities=14%  Similarity=0.130  Sum_probs=78.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhC---CeEEeccceec-ccccCCC--CCcc---------cHHHHHHHHHhhhcC
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMENYRV-GVDEGND--LDSI---------DFDALVQNLQDLTEG  124 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg---~~vI~~D~~~~-~~~~~~~--~~~~---------d~~~l~~~L~~l~~~  124 (818)
                      ..+.+|+|+|.+||||+|+|+.|.+.+|   +.++++.+--+ .+.....  .+.+         -...+...-..++..
T Consensus         9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~   88 (202)
T 3ch4_B            9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQA   88 (202)
T ss_dssp             CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhc
Confidence            3568999999999999999999999885   77889877433 2211111  1110         001111111111111


Q ss_pred             CccccccchhhhhccccccccccCCccEEEEEecccch--hhhhcCCC---EEEEEEcCHHHHHHHHHHhccCCCcCHHH
Q 003460          125 KDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD--ARLRSLLD---IRVAVVGGVHFSLISKVQYDIGDSCSLDS  199 (818)
Q Consensus       125 ~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~--~~l~~~~D---~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~  199 (818)
                      ++-   .+-...        .......++||+|.--..  ..++..+.   ..|.|.++.++|.+|...+... ..+   
T Consensus        89 d~~---~~~~~~--------~~~~~~~~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~~~~-~Dd---  153 (202)
T 3ch4_B           89 DPG---FFCRKI--------VEGISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFTPG-VDD---  153 (202)
T ss_dssp             CTT---TTHHHH--------SBTCCCSEEEECCCCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCCCTT-TTT---
T ss_pred             Cch---HHHHHH--------HHhcCCCcEEEeCCCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhcccc-ccc---
Confidence            110   000000        011123489999997765  34444332   3689999999998884221110 111   


Q ss_pred             HHHhhchhhhhccCCccccCcEEEECCC
Q 003460          200 LIDSIFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       200 ~~~~~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                            ..-+.-+... ..+|++|.|+-
T Consensus       154 ------~esE~gL~~~-~~~D~vI~Ndg  174 (202)
T 3ch4_B          154 ------AESECGLDNF-GDFDWVIENHG  174 (202)
T ss_dssp             ------SHHHHTTTTC-CCCSEEEEECS
T ss_pred             ------cccccCCCCC-CcCCEEEEeCC
Confidence                  1112333344 68999999985

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.74  E-value=0.00021  Score=73.49  Aligned_cols=28  Identities=25%  Similarity=0.526  Sum_probs=25.5

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      ....+|.|.|++||||||+++.|++.++
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            3568899999999999999999999986

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.73  E-value=5.8e-05  Score=84.79  Aligned_cols=37  Identities=22%  Similarity=0.268  Sum_probs=34.2

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY  551 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf  551 (818)
                      ..|.+|.|+|++||||||+|+.|++.+++.+++.|++
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~  292 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL  292 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH
Confidence            4577899999999999999999999999999999987

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.72  E-value=9.7e-05  Score=73.76  Aligned_cols=22  Identities=45%  Similarity=0.741  Sum_probs=20.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q 003460           65 VGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        65 IgI~G~sGSGKSTlA~~La~~L   86 (818)
                      |.|+||||||||||++.|.+.+
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7799999999999999998765

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.67  E-value=6.2e-05  Score=78.56  Aligned_cols=40  Identities=23%  Similarity=0.400  Sum_probs=33.6

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhC--Ccccccccccc
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLESYFK  553 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg--~~vis~Ddfy~  553 (818)
                      ...|.+|.|+|++||||||+|+.|+..++  ..+++.|.+..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~   70 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRS   70 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGT
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHH
Confidence            44678999999999999999999999986  56677887743

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.65  E-value=1.4e-05  Score=78.90  Aligned_cols=25  Identities=20%  Similarity=0.288  Sum_probs=22.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      .+|+|+||||||||||++.|+..+.
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCC
Confidence            5899999999999999999988653

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.65  E-value=8.3e-05  Score=73.54  Aligned_cols=37  Identities=24%  Similarity=0.303  Sum_probs=31.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCC-eEEeccceecc
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGC-TLISMENYRVG   99 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~-~vI~~D~~~~~   99 (818)
                      .+|+|+|++||||||+++.|+..++. ..++.|++...
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~   40 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHM   40 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTT
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhh
Confidence            47999999999999999999987765 77898887653

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.61  E-value=1.3e-05  Score=82.96  Aligned_cols=48  Identities=10%  Similarity=-0.000  Sum_probs=33.8

Q ss_pred             cCCEEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcchhhhhccc
Q 003460          628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEP  677 (818)
Q Consensus       628 ~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p  677 (818)
                      ..|+.||++++.+..+.|...|....  .......+...+...|..+..+
T Consensus       149 ~pd~~i~l~~~~~~~~~R~~~R~r~~--e~~~~~~~~~~v~~~y~~~~~~  196 (241)
T 2ocp_A          149 TLHGFIYLQASPQVCLKRLYQRAREE--EKGIELAYLEQLHGQHEAWLIH  196 (241)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHSCCTT--TTTCCHHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEEECCHHHHHHHHHhcCCcc--cccCCHHHHHHHHHHHHHHHhh
Confidence            57999999999999999987664211  1111135677788888887664

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.61  E-value=1.7e-05  Score=77.18  Aligned_cols=37  Identities=19%  Similarity=0.356  Sum_probs=33.3

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK  553 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~  553 (818)
                      +.+|+|+|++||||||+++.|+..++..+++.|++..
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~   40 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIE   40 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHH
Confidence            3579999999999999999999999999999888765

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.60  E-value=0.00016  Score=72.13  Aligned_cols=125  Identities=18%  Similarity=0.198  Sum_probs=63.0

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCC-cccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccc-cc
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGC-EVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET-GA  597 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~-~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~-~~  597 (818)
                      |.|+||||||||||++.|.+.+.- ..++.=.--++...++.+-.+-.-.+.+.+.   ..+.+|+-++.-.|.-.. |.
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~---~~i~~g~flE~~~~~g~~YGt   80 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFK---SMIKNNEFIEWAQFSGNYYGS   80 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHH---HHHHTTCEEEEEEETTEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHH---HHHHcCCEEEEEEEcCceeee
Confidence            446999999999999999876531 1111111111111111111111112222222   334556656554443211 11


Q ss_pred             cCCCcce-eeecCCcEEEEEecccchHhhhhcC---CEEEEEEcChhHHHHHHHhc
Q 003460          598 RSGFKEL-EVSEDCGVIIFEGVYALHPEIRKSL---DLWIAVVGGVHSHLISRVQR  649 (818)
Q Consensus       598 r~~~~~~-~~~~~~~vvIvEG~~~~~~~l~~~~---D~~I~v~~~~d~rl~Rri~R  649 (818)
                      ..  ... ........+|+++-..+...++..+   -..||+..|.-..|.+|+..
T Consensus        81 ~~--~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~  134 (186)
T 1ex7_A           81 TV--ASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEG  134 (186)
T ss_dssp             EH--HHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHH
T ss_pred             ec--ceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHh
Confidence            00  001 1122357888888766666666543   26789988887777777654

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.58  E-value=1.2e-05  Score=80.93  Aligned_cols=24  Identities=29%  Similarity=0.612  Sum_probs=22.5

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhC
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      +|+|.|++||||||+++.|++.++
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999999884

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=97.57  E-value=0.00017  Score=72.71  Aligned_cols=118  Identities=13%  Similarity=0.119  Sum_probs=68.7

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhC---CcccccccccchhhhhcccCCCc---------ccccHHHHHHHHHHHhc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSEQVKDFKYDDF---------SSLDLSLLSKNISDIRN  582 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg---~~vis~Ddfy~~~~~~~~~~d~p---------~t~D~~ll~~~L~~L~~  582 (818)
                      .++.||+|+|.+||||+|+|+.|.+.+|   +.+++|-|--+.......+.+..         +.+ ...+...-..+++
T Consensus         9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~-R~~m~~~g~~~R~   87 (202)
T 3ch4_B            9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAF-RKDMIRWGEEKRQ   87 (202)
T ss_dssp             CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSH-HHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHH-HHHHHHHHHHHHh
Confidence            4678999999999999999999999885   67888888665322222111100         011 1112211122221


Q ss_pred             -CCceecccccccccccCCCcceeeecCCcEEEEEecccch--HhhhhcCC---EEEEEEcChhHHHHHH
Q 003460          583 -GRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH--PEIRKSLD---LWIAVVGGVHSHLISR  646 (818)
Q Consensus       583 -g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~--~~l~~~~D---~~I~v~~~~d~rl~Rr  646 (818)
                       +..+    |-.....         ....+++||+|+--.+  ..++..+.   ..|.|.++.++|.+|.
T Consensus        88 ~d~~~----~~~~~~~---------~~~~~~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg  144 (202)
T 3ch4_B           88 ADPGF----FCRKIVE---------GISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRG  144 (202)
T ss_dssp             HCTTT----THHHHSB---------TCCCSEEEECCCCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTT
T ss_pred             cCchH----HHHHHHH---------hcCCCcEEEeCCCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHh
Confidence             1110    0000000         0123689999999876  34555442   4689999999999984

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.49  E-value=0.00013  Score=73.74  Aligned_cols=39  Identities=18%  Similarity=0.169  Sum_probs=31.4

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhC------Cccccccccc
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG------CEVVSLESYF  552 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg------~~vis~Ddfy  552 (818)
                      ...+.+|.|.|++||||||+++.|+..++      +.+++.|++.
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r   66 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR   66 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence            34577899999999999999999999875      5566656553

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=97.43  E-value=0.00038  Score=80.39  Aligned_cols=41  Identities=20%  Similarity=0.345  Sum_probs=34.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceeccc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGV  100 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~  100 (818)
                      ..+.+|.++|.+||||||+|+.|++.|+     +.+++.|++....
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~   78 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA   78 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh
Confidence            4568899999999999999999999884     4568999976543

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=97.42  E-value=0.00018  Score=83.50  Aligned_cols=107  Identities=17%  Similarity=0.181  Sum_probs=61.8

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhC-----CcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVP  589 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P  589 (818)
                      ..+.+|.++|++||||||+|+.|++.++     +.+++.|.+...- .+...|..   -+..   ..+..+..   +.. 
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l-~~~~~f~~---~er~---~~l~~i~~---~~~-  438 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHL-SRGLGFSK---EDRI---TNILRVGF---VAS-  438 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHT-CTTCCSSH---HHHH---HHHHHHHH---HHH-
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhh-cccccccH---HHHH---HHHHHHHH---HHH-
Confidence            4578999999999999999999999875     3566666542210 01111111   1111   11111110   000 


Q ss_pred             cccccccccCCCcceeeecCCcEEEEEecccch---HhhhhcC---C-EEEEEEcChhHHHHHHH
Q 003460          590 IFDLETGARSGFKELEVSEDCGVIIFEGVYALH---PEIRKSL---D-LWIAVVGGVHSHLISRV  647 (818)
Q Consensus       590 ~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~l~~~~---D-~~I~v~~~~d~rl~Rri  647 (818)
                                   .  .......+|+++..++.   ..+++.+   | ..||++++.++++.|..
T Consensus       439 -------------~--~l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~  488 (546)
T 2gks_A          439 -------------E--IVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV  488 (546)
T ss_dssp             -------------H--HHHTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCC
T ss_pred             -------------H--HHhCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhh
Confidence                         0  01123578888766543   2344444   6 89999999999988853

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.41  E-value=0.00014  Score=77.44  Aligned_cols=41  Identities=27%  Similarity=0.391  Sum_probs=35.4

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHh--CCcccccccccch
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIV--GCEVVSLESYFKS  554 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~l--g~~vis~Ddfy~~  554 (818)
                      ...|.+|.|+|+|||||||+|+.|++.+  +..+||.|.|...
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~   72 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQ   72 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHh
Confidence            3467899999999999999999999988  6788899888643

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.41  E-value=0.00025  Score=69.94  Aligned_cols=37  Identities=30%  Similarity=0.459  Sum_probs=29.5

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY  551 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddf  551 (818)
                      .++.+|.|.|++||||||+++.|+..++     +.+++.|.+
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~   52 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA   52 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence            3568899999999999999999999874     234555554

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.35  E-value=0.001  Score=67.99  Aligned_cols=34  Identities=24%  Similarity=0.254  Sum_probs=24.4

Q ss_pred             HHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           54 ELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        54 ~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      .+....+...+++|.||+|||||||.+.|+..+.
T Consensus         8 ~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A            8 HHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             -------CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cccccCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            3334456667999999999999999999988764

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.34  E-value=0.00019  Score=83.28  Aligned_cols=39  Identities=36%  Similarity=0.345  Sum_probs=32.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhC------CeEEeccceec
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIG------CTLISMENYRV   98 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg------~~vI~~D~~~~   98 (818)
                      .+..+|+|+|++||||||+++.|+..++      +.+++.|++..
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~  411 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR  411 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence            4568899999999999999999999884      34588888754

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.34  E-value=9.1e-05  Score=79.63  Aligned_cols=38  Identities=32%  Similarity=0.473  Sum_probs=34.8

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc--cch
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKS  554 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf--y~~  554 (818)
                      +.+|.|+||+||||||||..|++.++..+||.|.+  |+.
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~   42 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRG   42 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceee
Confidence            56789999999999999999999999999999998  764

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.29  E-value=0.0014  Score=67.45  Aligned_cols=47  Identities=6%  Similarity=-0.076  Sum_probs=33.8

Q ss_pred             CCCEEEEEEcCHHHHHHHHHHhccCCCc-CHHHHHHhhchhhhhccCC
Q 003460          168 LLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLIDSIFPLFRKHIEP  214 (818)
Q Consensus       168 ~~D~~I~Vda~~e~~l~Rri~Rd~~~~~-s~e~~~~~~~p~~~~~Iep  214 (818)
                      ..|.+||++++.++++.|...|...... ...++..++...|..++.+
T Consensus       149 ~pd~~i~l~~~~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~  196 (241)
T 2ocp_A          149 TLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIH  196 (241)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEEECCHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhh
Confidence            5799999999999999998877643222 1245566677777776654

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.27  E-value=0.00012  Score=73.08  Aligned_cols=35  Identities=20%  Similarity=0.160  Sum_probs=29.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh-CCeEEeccc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMEN   95 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L-g~~vI~~D~   95 (818)
                      ++.+|+|+|++||||||+++.|++.+ |..+++++.
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~   38 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF   38 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence            35689999999999999999999998 577777654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.27  E-value=0.00014  Score=74.94  Aligned_cols=59  Identities=8%  Similarity=0.064  Sum_probs=36.0

Q ss_pred             cCCCEEEEEEcCHHHHHHHHHHhccCCCcC--HHHHHHhhchhhhhccCCccccCcEEEECC
Q 003460          167 SLLDIRVAVVGGVHFSLISKVQYDIGDSCS--LDSLIDSIFPLFRKHIEPDLHHAQIRINNR  226 (818)
Q Consensus       167 ~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s--~e~~~~~~~p~~~~~Iep~~~~ADiII~N~  226 (818)
                      ...|++||+++|+++.+.|...|....+..  ..++.+++...|..+.+.. ...-++|+.+
T Consensus       150 ~~PDl~I~Ldv~~e~~~~Ri~~R~~~dr~E~~~~ef~~rv~~~Y~~la~~~-~~~~~vIDa~  210 (227)
T 3v9p_A          150 FQPDLTVLFDVPPQIASARRGAVRMPDKFESESDAFFARTRAEYLRRAQEA-PHRFVIVDSS  210 (227)
T ss_dssp             CCCSEEEEEECCSSCGGGTTTCCCCC---CCHHHHHHHHHHHHHHHHHHHC-TTTEEEEETT
T ss_pred             CCCCEEEEEeCCHHHHHHHHHhccCccchhhhhHHHHHHHHHHHHHHHHHh-cCCEEEEeCC
Confidence            347999999999999988887775323322  2456666666666644211 1224566655

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.25  E-value=0.00015  Score=77.79  Aligned_cols=40  Identities=38%  Similarity=0.625  Sum_probs=35.8

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc--cch
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKS  554 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf--y~~  554 (818)
                      ..|.+|.|+||+||||||||..|++.++..+||.|++  |+.
T Consensus         8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~   49 (316)
T 3foz_A            8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKG   49 (316)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTT
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccccccc
Confidence            4567899999999999999999999999999999985  654

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.24  E-value=0.00014  Score=80.87  Aligned_cols=38  Identities=29%  Similarity=0.515  Sum_probs=34.8

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCccccccc--ccch
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES--YFKS  554 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Dd--fy~~  554 (818)
                      +.+|+|+||+||||||||..|++.++..+||+|+  +|+.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~   41 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKD   41 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSS
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecc
Confidence            4678999999999999999999999999999999  6765

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.22  E-value=0.00014  Score=78.64  Aligned_cols=35  Identities=37%  Similarity=0.672  Sum_probs=33.1

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY  551 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf  551 (818)
                      +.+|.|+||+||||||+|..|++.++..++++|++
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~   39 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA   39 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence            46899999999999999999999999999999997

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=97.21  E-value=0.00055  Score=80.31  Aligned_cols=34  Identities=26%  Similarity=0.421  Sum_probs=30.8

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh---CCcccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSLE  549 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l---g~~vis~D  549 (818)
                      ++.+|.|+|.+||||||+|+.|++.|   |..++.+|
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD   87 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD   87 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence            67899999999999999999999998   87777776

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=97.15  E-value=0.00077  Score=67.69  Aligned_cols=30  Identities=30%  Similarity=0.421  Sum_probs=25.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHh---CCeEEec
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISM   93 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~L---g~~vI~~   93 (818)
                      .|.|-|+-||||||.++.|++.|   |..++.+
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t   34 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK   34 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            58899999999999999999987   5666543

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=97.15  E-value=0.00047  Score=70.74  Aligned_cols=29  Identities=31%  Similarity=0.408  Sum_probs=25.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGC   88 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~   88 (818)
                      .+..+|.|.|++||||||+++.|++.|+.
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            45688999999999999999999997753

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.13  E-value=0.00068  Score=70.20  Aligned_cols=57  Identities=11%  Similarity=-0.052  Sum_probs=32.3

Q ss_pred             CCCEEEEEEcCHHHHHHHHHHhccCCCc--CHHHHHHhhchhhhhccCCccccCcEEEECC
Q 003460          168 LLDIRVAVVGGVHFSLISKVQYDIGDSC--SLDSLIDSIFPLFRKHIEPDLHHAQIRINNR  226 (818)
Q Consensus       168 ~~D~~I~Vda~~e~~l~Rri~Rd~~~~~--s~e~~~~~~~p~~~~~Iep~~~~ADiII~N~  226 (818)
                      ..|++||+++|+++.++|...|....+.  ...++.+++...|..+.+... . .++|+++
T Consensus       154 ~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~E~~~~~~~~rv~~~y~~la~~~~-~-~~vIDa~  212 (236)
T 3lv8_A          154 KPDLTLYLDIDPKLGLERARGRGELDRIEKMDISFFERARERYLELANSDD-S-VVMIDAA  212 (236)
T ss_dssp             CCSEEEEEECCHHHHHHC-----CCCTTTTSCHHHHHHHHHHHHHHHHHCT-T-EEEEETT
T ss_pred             CCCEEEEEeCCHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHHHCC-C-EEEEeCC
Confidence            5799999999999999998888543331  123555555555555432111 1 5677766

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.12  E-value=0.00017  Score=78.27  Aligned_cols=36  Identities=22%  Similarity=0.358  Sum_probs=33.6

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY  551 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf  551 (818)
                      ++.+|.|+||+|||||||+..|++.++..+||.|.+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~   74 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM   74 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence            456889999999999999999999999999999988

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.11  E-value=0.0002  Score=74.19  Aligned_cols=38  Identities=26%  Similarity=0.460  Sum_probs=34.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV   98 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~   98 (818)
                      ++.+|+|.|++||||||+++.|++.+|...++.|++..
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~   63 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLR   63 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHH
Confidence            46789999999999999999999999998888888644

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.11  E-value=0.002  Score=65.48  Aligned_cols=59  Identities=7%  Similarity=-0.008  Sum_probs=36.4

Q ss_pred             cCCCEEEEEEcCHHHHHHHHHHhccCCCcC--HHHHHHhhchhhhhccCCccccCcEEEECC
Q 003460          167 SLLDIRVAVVGGVHFSLISKVQYDIGDSCS--LDSLIDSIFPLFRKHIEPDLHHAQIRINNR  226 (818)
Q Consensus       167 ~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s--~e~~~~~~~p~~~~~Iep~~~~ADiII~N~  226 (818)
                      ...|++||+++|+++.+.|...|....+..  ..++.+++...|....+.. ...-++|+.+
T Consensus       130 ~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~E~~~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~  190 (213)
T 4edh_A          130 LRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTYLQRAAQA-PERYQVLDAG  190 (213)
T ss_dssp             CCCSEEEEEECCHHHHHHHHCCCSSCCTTTTSCHHHHHHHHHHHHHHHHHC-TTTEEEEETT
T ss_pred             CCCCEEEEEeCCHHHHHHHHHhcCCcCcccccHHHHHHHHHHHHHHHHHHC-CCcEEEEeCC
Confidence            347999999999999999988775323321  2345555555565543211 1234666665

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.08  E-value=0.00022  Score=70.28  Aligned_cols=38  Identities=29%  Similarity=0.408  Sum_probs=31.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCC--eEEeccceec
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGC--TLISMENYRV   98 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~--~vI~~D~~~~   98 (818)
                      ...+|+|.|++||||||+++.|+..++.  ..++.|++..
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~   47 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWG   47 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhh
Confidence            4578999999999999999999987653  4678887644

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.07  E-value=0.0002  Score=74.11  Aligned_cols=39  Identities=26%  Similarity=0.427  Sum_probs=34.5

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      +|.+|+|.|++||||||+++.|++.+|...++.|++...
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~   64 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE   64 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence            477999999999999999999999999888888877654

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=97.03  E-value=0.0038  Score=63.51  Aligned_cols=57  Identities=9%  Similarity=-0.044  Sum_probs=36.8

Q ss_pred             CCCEEEEEEcCHHHHHHHHHHhccCCCc--CHHHHHHhhchhhhhccCCccccCcEEEECC
Q 003460          168 LLDIRVAVVGGVHFSLISKVQYDIGDSC--SLDSLIDSIFPLFRKHIEPDLHHAQIRINNR  226 (818)
Q Consensus       168 ~~D~~I~Vda~~e~~l~Rri~Rd~~~~~--s~e~~~~~~~p~~~~~Iep~~~~ADiII~N~  226 (818)
                      ..|++||+++|+++.+.|...|....+.  ...++.+++...|..+.+..  ..-++|+.+
T Consensus       132 ~PDl~i~Ldv~~e~~~~Ri~~R~~~dr~E~~~~~f~~rv~~~y~~la~~~--~~~~vIDa~  190 (213)
T 4tmk_A          132 RPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRARYLELAAQD--KSIHTIDAT  190 (213)
T ss_dssp             CCSEEEEEECCHHHHHHHHHHHSSCCTTTTSCHHHHHHHHHHHHHHHHTC--TTEEEEETT
T ss_pred             CCCEEEEEeCCHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHHC--CcEEEECCC
Confidence            5699999999999999999888543331  12345666666666654221  123555554

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.03  E-value=0.00023  Score=70.94  Aligned_cols=35  Identities=17%  Similarity=0.206  Sum_probs=29.5

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh-CCccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLES  550 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l-g~~vis~Dd  550 (818)
                      ++.+|+|.|++||||||+++.|++.+ |..+++++.
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~   38 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF   38 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence            45689999999999999999999988 566776654

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.95  E-value=0.0024  Score=64.56  Aligned_cols=29  Identities=28%  Similarity=0.527  Sum_probs=24.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHh--CCeEE
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVI--GCTLI   91 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~L--g~~vI   91 (818)
                      ..|.|-|+.||||||.++.|++.|  |..++
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~   33 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVI   33 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHCCCCEE
Confidence            468999999999999999999988  44444

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.92  E-value=0.00043  Score=71.08  Aligned_cols=160  Identities=16%  Similarity=0.155  Sum_probs=70.5

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCC----cccc-c---ccccchhhhhcccCCCcccccHH------------HH
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGC----EVVS-L---ESYFKSEQVKDFKYDDFSSLDLS------------LL  573 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~----~vis-~---Ddfy~~~~~~~~~~d~p~t~D~~------------ll  573 (818)
                      ..++.+|.+.|++||||||+++.|++.++.    .++. +   ++--..+..+++-.+... ++..            .+
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~~~~-~~~~~e~llf~a~R~~~~   96 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQG-LDSLSELLFFIAMRREHF   96 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHTCSS-CCHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHH
Confidence            456789999999999999999999998753    3322 1   000000001111001111 2211            11


Q ss_pred             HHHHH-HHhcCCceecccccccccccCCCcceeeecCCcEEEEEeccc-chHhhh-hcCCEEEEEEcChhHHHHHHHhcC
Q 003460          574 SKNIS-DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYA-LHPEIR-KSLDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       574 ~~~L~-~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~-~~~~l~-~~~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                      .+.+. .|.+|..|-.-+|-.+.--..+..     ...+    ..|+. ++.... ...|++||++++.++.+.|. .||
T Consensus        97 ~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~-----~g~~----~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~rd  166 (223)
T 3ld9_A           97 VKIIKPSLMQKKIVICDRFIDSTIAYQGYG-----QGID----CSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-CKN  166 (223)
T ss_dssp             HHTHHHHHHTTCEEEEESCHHHHHHHHTTT-----TCCC----HHHHHHHHHHHCSSCCSEEEEEECC------------
T ss_pred             HHHHHHHHhcCCeEEEccchhhHHHhcccc-----CCcc----HHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-ccC
Confidence            12121 345666665555554431110000     0000    00111 111111 35799999999999999987 444


Q ss_pred             ccccCcccchhhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460          651 KSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRND  689 (818)
Q Consensus       651 ~~~rg~~~~~~~~~~~v~p~~~~~I~p~~~~ADivI~n~  689 (818)
                      .-+.    +...|...++..|..+.... ....++|+++
T Consensus       167 r~E~----~~~e~~~rv~~~y~~la~~~-~~~~~vIDa~  200 (223)
T 3ld9_A          167 GYEF----ADMEFYYRVRDGFYDIAKKN-PHRCHVITDK  200 (223)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHC-TTTEEEEESS
T ss_pred             cccc----chHHHHHHHHHHHHHHHHHC-CCCEEEEcCC
Confidence            2211    11356677777777765433 2356788875

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.91  E-value=0.00032  Score=69.15  Aligned_cols=38  Identities=26%  Similarity=0.370  Sum_probs=30.1

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCC--ccccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGC--EVVSLESYF  552 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~--~vis~Ddfy  552 (818)
                      ....+|+|.|++||||||+++.|+..++.  ..++.|++.
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~   46 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLW   46 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchh
Confidence            34578999999999999999999886543  356667664

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.91  E-value=0.0027  Score=63.50  Aligned_cols=25  Identities=40%  Similarity=0.583  Sum_probs=22.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      .+++|.||+|||||||.+.|...+.
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCc
Confidence            4789999999999999999988653

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.91  E-value=0.00092  Score=69.20  Aligned_cols=57  Identities=9%  Similarity=-0.074  Sum_probs=33.7

Q ss_pred             cCCEEEEEEcChhHHHHHHHhcCccccCcccch--hhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460          628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRND  689 (818)
Q Consensus       628 ~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n~  689 (818)
                      ..|++||+++|.++.+.|...|...   ...+.  ..|...++..|..+..... . .++|+++
T Consensus       154 ~PDlvi~Ldv~~e~~~~Ri~~R~~~---dr~E~~~~~~~~rv~~~y~~la~~~~-~-~~vIDa~  212 (236)
T 3lv8_A          154 KPDLTLYLDIDPKLGLERARGRGEL---DRIEKMDISFFERARERYLELANSDD-S-VVMIDAA  212 (236)
T ss_dssp             CCSEEEEEECCHHHHHHC-----CC---CTTTTSCHHHHHHHHHHHHHHHHHCT-T-EEEEETT
T ss_pred             CCCEEEEEeCCHHHHHHHHHhcCCc---chhhhhHHHHHHHHHHHHHHHHHHCC-C-EEEEeCC
Confidence            4799999999999999998877421   11221  3566677777776654221 2 5677764

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=96.90  E-value=0.00049  Score=71.45  Aligned_cols=34  Identities=18%  Similarity=0.212  Sum_probs=31.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN   95 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~   95 (818)
                      |.+|||+|++||||||+|+.|++.+|+.+++..+
T Consensus         1 m~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~   34 (241)
T 1dek_A            1 MKLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAG   34 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSCEEECCTTH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCeEEecCh
Confidence            4789999999999999999999989999988765

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.79  E-value=0.00048  Score=67.98  Aligned_cols=36  Identities=19%  Similarity=0.309  Sum_probs=29.9

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCC-cccccccccc
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGC-EVVSLESYFK  553 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~-~vis~Ddfy~  553 (818)
                      .+|+|.|++||||||+++.|+..++. ..++.|++..
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~   39 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINH   39 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhh
Confidence            47899999999999999999987754 5677777754

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=96.76  E-value=0.0011  Score=77.52  Aligned_cols=39  Identities=13%  Similarity=0.117  Sum_probs=30.8

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhC----C--cccccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVG----C--EVVSLESYFK  553 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg----~--~vis~Ddfy~  553 (818)
                      ..+.+|.|+|.+||||||+|+.|++.|+    .  .+++.|.+..
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~  438 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH  438 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHH
Confidence            4578999999999999999999999875    2  4555565443

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.71  E-value=0.0025  Score=64.05  Aligned_cols=120  Identities=9%  Similarity=0.091  Sum_probs=58.6

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCC-cccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGC-EVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE  594 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~-~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~  594 (818)
                      ...+|+|+||||||||||++.|...+.. ...+.-.--++...++.+-.+..-.+.+.+.+.+   ..+.-+..-.|.-.
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i---~~~~fle~~~~~~n   94 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNI---SANEFLEFGSYQGN   94 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHH---HTTCEEEEEEETTE
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhh---hhhhhhhhhhhhce
Confidence            3457889999999999999999987641 1111110001011111111111223444444433   34443433322111


Q ss_pred             c-cccCCCcceeeecCCcEEEEEecccchHhhhhc-CC-EEEEEEcCh
Q 003460          595 T-GARSGFKELEVSEDCGVIIFEGVYALHPEIRKS-LD-LWIAVVGGV  639 (818)
Q Consensus       595 ~-~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~-~D-~~I~v~~~~  639 (818)
                      . +.... ..........++|+|.-.-+-..++.. .+ ..|||..|.
T Consensus        95 ~YGt~~~-~v~~~l~~G~~vildid~qg~~~~~~~~~~~~~Ifi~Pps  141 (197)
T 3ney_A           95 MFGTKFE-TVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTD  141 (197)
T ss_dssp             EEEEEHH-HHHHHHHTTCEEEEECCGGGHHHHCSTTTCEEEEEEEECC
T ss_pred             ecccchh-hHHHHHhcCCeEEEEECHHHHHHHHhcCCCceEEEEeCCC
Confidence            1 11000 001123456889999866665555543 23 788998664

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.65  E-value=0.0016  Score=74.82  Aligned_cols=48  Identities=17%  Similarity=0.189  Sum_probs=36.0

Q ss_pred             HHHHHHHHHH-hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-------eEEeccc
Q 003460           48 LVKSIQELRE-KKGGIVTVGIGGPSGSGKTSLAEKLASVIGC-------TLISMEN   95 (818)
Q Consensus        48 l~~~i~~~~~-~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~-------~vI~~D~   95 (818)
                      +.+.+..... +.....+|.++|.+||||||+|+.|++.|+.       .+++.|.
T Consensus       380 V~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          380 VVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             HHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             hHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            4444444432 2335589999999999999999999999985       5677776

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.55  E-value=0.0071  Score=68.76  Aligned_cols=36  Identities=17%  Similarity=0.207  Sum_probs=27.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN   95 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~   95 (818)
                      ..+.+|.++|.+||||||+++.|++.++...+++|.
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~   72 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTRE   72 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceE
Confidence            456899999999999999999999987633333333

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.49  E-value=0.0032  Score=67.23  Aligned_cols=35  Identities=34%  Similarity=0.405  Sum_probs=29.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME   94 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D   94 (818)
                      ..+..|.|.|++|+||||+|+.++..++..++..+
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~   81 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK   81 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence            34567899999999999999999999987776544

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.45  E-value=0.0018  Score=64.99  Aligned_cols=38  Identities=29%  Similarity=0.176  Sum_probs=32.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--eccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGV  100 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~  100 (818)
                      ...|.|+|++||||||+|..|++..+ .+|+.|..  |+..
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v~~~~   73 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDVYQQD   73 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEEEECS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhheeecC
Confidence            35689999999999999999998766 99999985  5543

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.44  E-value=0.0037  Score=63.16  Aligned_cols=46  Identities=13%  Similarity=0.081  Sum_probs=29.8

Q ss_pred             CCEEEEEEcChhHHHHHHHhcCccccCcccc--hhhHHHhhcchhhhhcc
Q 003460          629 LDLWIAVVGGVHSHLISRVQRDKSRMGCFMS--QNDIMMTVFPMFQQHIE  676 (818)
Q Consensus       629 ~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~--~~~~~~~v~p~~~~~I~  676 (818)
                      -|++||+++|+++.+.|...|.... + ..+  ...|...++..|.++..
T Consensus       125 PDl~i~Ld~~~e~~~~Ri~~r~~~~-d-r~e~~~~~f~~~v~~~Y~~l~~  172 (205)
T 4hlc_A          125 PDLTIYLNVSAEVGRERIIKNSRDQ-N-RLDQEDLKFHEKVIEGYQEIIH  172 (205)
T ss_dssp             CSEEEEEECCHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEeeeCCCHHHHHHHHHhcCCcc-c-chhccCHHHHHHHHHHHHHHHH
Confidence            4899999999999999987664211 1 122  13566777778877654

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=96.37  E-value=0.0016  Score=67.47  Aligned_cols=37  Identities=19%  Similarity=0.173  Sum_probs=32.0

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      .+|||+|++||||||+|+.|++.+|+.++++.+-.+.
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~   38 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKD   38 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHH
Confidence            5899999999999999999999899888887665443

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.35  E-value=0.0043  Score=64.03  Aligned_cols=31  Identities=29%  Similarity=0.382  Sum_probs=26.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEe
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLIS   92 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~   92 (818)
                      +.-|.|.|++|+|||++|+.++..++..++.
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~   69 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLA   69 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            4558899999999999999999999876543

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.34  E-value=0.0043  Score=64.25  Aligned_cols=32  Identities=31%  Similarity=0.436  Sum_probs=27.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISM   93 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~   93 (818)
                      +.-|.|.|++|+||||+|+.++..++.+++..
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i   76 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI   76 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence            34588999999999999999999998765544

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.33  E-value=0.0065  Score=68.17  Aligned_cols=60  Identities=23%  Similarity=0.335  Sum_probs=43.7

Q ss_pred             Ccccccch--hhHHHHHHHHHHHH----------h--cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460           36 PVHASFDH--GYYLLVKSIQELRE----------K--KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN   95 (818)
Q Consensus        36 ~~~~s~~~--~~~~l~~~i~~~~~----------~--~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~   95 (818)
                      ...++|++  |+....+.+.+...          .  .+.+.=|.+.||+|+|||++|+++|..+|+.++..+.
T Consensus       166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~  239 (428)
T 4b4t_K          166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNG  239 (428)
T ss_dssp             SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEG
T ss_pred             CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence            34578988  66666665544331          1  1345669999999999999999999999988765543

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.32  E-value=0.0029  Score=72.59  Aligned_cols=59  Identities=5%  Similarity=0.109  Sum_probs=41.4

Q ss_pred             ccCCCCcchhhhhHHHHHHHHHHHH-cCCCCEEEeeeCCCCccHHHHHHHHHHHhCC-------ccccccc
Q 003460          488 VPMPDSYDFDRGLLLSVQAIQALLE-NKGLPVIVGIGGPSGSGKTSLAHKMANIVGC-------EVVSLES  550 (818)
Q Consensus       488 ~~~~~~~~~~e~~~~~~~~i~~l~~-~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~-------~vis~Dd  550 (818)
                      ...|+++...|..    ..+++... +.....+|.++|.+||||||+|+.|++.|+.       .+++.|+
T Consensus       369 ~~~P~~f~rpeV~----~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          369 GEIPEWFSYPEVV----KILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             CCCCTTTSCHHHH----HHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             CCCCccccChhhH----HHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            5567888766552    22333221 2335688999999999999999999999985       4555555

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.32  E-value=0.0043  Score=65.11  Aligned_cols=34  Identities=32%  Similarity=0.430  Sum_probs=28.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM   93 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~   93 (818)
                      ..+.-|.|.|++|+||||+|+.++..++..++..
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v   82 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRV   82 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            3455689999999999999999999998776543

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.16  E-value=0.0075  Score=67.02  Aligned_cols=59  Identities=31%  Similarity=0.450  Sum_probs=43.9

Q ss_pred             cccccch--hhHHHHHHHHHHHH----------h--cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460           37 VHASFDH--GYYLLVKSIQELRE----------K--KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN   95 (818)
Q Consensus        37 ~~~s~~~--~~~~l~~~i~~~~~----------~--~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~   95 (818)
                      ..++|++  |+....+.+++...          .  .+.+.=|.+.||+|+|||++|+++|..+|++++..+.
T Consensus       143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~  215 (405)
T 4b4t_J          143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSG  215 (405)
T ss_dssp             CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEh
Confidence            4588998  66666666644332          1  1345668999999999999999999999988765543

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.15  E-value=0.0023  Score=63.08  Aligned_cols=24  Identities=38%  Similarity=0.594  Sum_probs=22.5

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhC
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      .++|.||+|||||||.+.|+..++
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999886

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.14  E-value=0.0093  Score=66.64  Aligned_cols=60  Identities=25%  Similarity=0.281  Sum_probs=44.7

Q ss_pred             Ccccccch--hhHHHHHHHHHHHHh------------cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460           36 PVHASFDH--GYYLLVKSIQELREK------------KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN   95 (818)
Q Consensus        36 ~~~~s~~~--~~~~l~~~i~~~~~~------------~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~   95 (818)
                      ...++|++  |+....+.+++...-            .+.+.=|.+.||+|+|||++|+++|..+|+.++..+.
T Consensus       176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~  249 (437)
T 4b4t_I          176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVG  249 (437)
T ss_dssp             SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEES
T ss_pred             CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEH
Confidence            45688998  666666666544321            1345679999999999999999999999988765543

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.08  E-value=0.008  Score=67.55  Aligned_cols=60  Identities=20%  Similarity=0.246  Sum_probs=44.0

Q ss_pred             Ccccccch--hhHHHHHHHHHHHH------------hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460           36 PVHASFDH--GYYLLVKSIQELRE------------KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN   95 (818)
Q Consensus        36 ~~~~s~~~--~~~~l~~~i~~~~~------------~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~   95 (818)
                      ...++|++  |.....+.+.+...            ..+.+.=|.+.||+|+|||++|+++|..+|++++..+.
T Consensus       175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~  248 (434)
T 4b4t_M          175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAA  248 (434)
T ss_dssp             SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred             CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence            34678998  66666666544321            11346679999999999999999999999988765543

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.06  E-value=0.0076  Score=67.80  Aligned_cols=59  Identities=31%  Similarity=0.396  Sum_probs=42.9

Q ss_pred             Ccccccch--hhHHHHHHHHHHHH------------hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460           36 PVHASFDH--GYYLLVKSIQELRE------------KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME   94 (818)
Q Consensus        36 ~~~~s~~~--~~~~l~~~i~~~~~------------~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D   94 (818)
                      ...++|++  |+....+.+.....            .-+.+.=|.+.||+|+|||++|+++|..+|+.++..+
T Consensus       175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~  247 (437)
T 4b4t_L          175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP  247 (437)
T ss_dssp             SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence            34678988  56666555544331            1134567999999999999999999999998876543

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.02  E-value=0.0031  Score=62.21  Aligned_cols=25  Identities=36%  Similarity=0.583  Sum_probs=23.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGC   88 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~   88 (818)
                      .++|.|++|||||||.+.|+..+++
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~i   26 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5899999999999999999998873

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.01  E-value=0.0078  Score=63.56  Aligned_cols=33  Identities=30%  Similarity=0.433  Sum_probs=28.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM   93 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~   93 (818)
                      .+.-|.|.|++|+||||+|+.++..++..++..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i   85 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNI   85 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence            346789999999999999999999998766543

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.00  E-value=0.0015  Score=65.35  Aligned_cols=24  Identities=38%  Similarity=0.641  Sum_probs=22.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      +|+|.|++||||||+++.|++.++
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            799999999999999999999885

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.97  E-value=0.0022  Score=66.99  Aligned_cols=33  Identities=18%  Similarity=0.355  Sum_probs=28.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh-CCeEEe
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI-GCTLIS   92 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L-g~~vI~   92 (818)
                      .++.+|+|.|++||||||+++.|++.+ ++.++.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~   55 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP   55 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence            467899999999999999999999998 566664

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.97  E-value=0.0036  Score=61.38  Aligned_cols=26  Identities=27%  Similarity=0.216  Sum_probs=22.9

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      .+.+|+|+|++||||||++..|...+
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence            35689999999999999999999876

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.93  E-value=0.0037  Score=62.76  Aligned_cols=26  Identities=23%  Similarity=0.429  Sum_probs=23.1

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      --+++|.||+|||||||++.|+..+.
T Consensus        20 Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           20 GRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            35799999999999999999998774

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.92  E-value=0.0032  Score=63.24  Aligned_cols=36  Identities=22%  Similarity=0.162  Sum_probs=30.9

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK  553 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~  553 (818)
                      ...|.|+||+||||||+|..|++... .+++.|....
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v   69 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDV   69 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhe
Confidence            45688999999999999999998766 8999987644

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.91  E-value=0.0027  Score=61.83  Aligned_cols=34  Identities=32%  Similarity=0.344  Sum_probs=27.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY   96 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~   96 (818)
                      ..-+++|.|++||||||+++.+.  .|..+++.|.+
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~~   41 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDFC   41 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHHH
Confidence            45689999999999999999863  35667777764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.90  E-value=0.0041  Score=60.90  Aligned_cols=26  Identities=31%  Similarity=0.323  Sum_probs=23.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .+.+|+|+|++||||||++..|+..|
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence            46789999999999999999998876

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.89  E-value=0.0041  Score=62.43  Aligned_cols=26  Identities=31%  Similarity=0.373  Sum_probs=23.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      .-+++|.|++||||||+++.|+..+.
T Consensus        20 Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           20 GRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            45799999999999999999998774

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.86  E-value=0.0033  Score=62.84  Aligned_cols=25  Identities=36%  Similarity=0.522  Sum_probs=21.8

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      .+++|.||+|||||||.+.|...+.
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCc
Confidence            4688999999999999999988653

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.85  E-value=0.01  Score=63.77  Aligned_cols=56  Identities=21%  Similarity=0.339  Sum_probs=39.3

Q ss_pred             ccccch--hhHHHHHHHHHHHH-----------hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460           38 HASFDH--GYYLLVKSIQELRE-----------KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM   93 (818)
Q Consensus        38 ~~s~~~--~~~~l~~~i~~~~~-----------~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~   93 (818)
                      .++|++  +.....+.+.....           ....+.-|.|.|++|+|||++|+.++..++..++..
T Consensus        14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v   82 (322)
T 3eie_A           14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV   82 (322)
T ss_dssp             CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence            456776  55555555544331           112245699999999999999999999999876544

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.84  E-value=0.0041  Score=66.16  Aligned_cols=36  Identities=25%  Similarity=0.431  Sum_probs=30.6

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE  549 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D  549 (818)
                      .+.|..+.+.||+|+|||++|+.+++.+|..++.++
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~   68 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMS   68 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            346788999999999999999999999997766544

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.81  E-value=0.012  Score=66.27  Aligned_cols=58  Identities=22%  Similarity=0.306  Sum_probs=43.4

Q ss_pred             cccccch--hhHHHHHHHHHHHH----------h--cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460           37 VHASFDH--GYYLLVKSIQELRE----------K--KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME   94 (818)
Q Consensus        37 ~~~s~~~--~~~~l~~~i~~~~~----------~--~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D   94 (818)
                      ..++|++  |+....+.+++...          .  -+.+.=|.+.||+|+|||++|+++|..+|+.++..+
T Consensus       204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs  275 (467)
T 4b4t_H          204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVI  275 (467)
T ss_dssp             CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEE
Confidence            3588988  66666666654321          1  145667899999999999999999999998876554

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=95.79  E-value=0.0092  Score=61.57  Aligned_cols=29  Identities=38%  Similarity=0.518  Sum_probs=25.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460           65 VGIGGPSGSGKTSLAEKLASVIGCTLISM   93 (818)
Q Consensus        65 IgI~G~sGSGKSTlA~~La~~Lg~~vI~~   93 (818)
                      |+|.|++||||||+++.++..++...+..
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~   80 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEARVPFITA   80 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            89999999999999999999887655443

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.77  E-value=0.0042  Score=60.53  Aligned_cols=32  Identities=38%  Similarity=0.414  Sum_probs=23.7

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE  549 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D  549 (818)
                      +.-+++|.|++|||||||++.+.  .+..+++.|
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d   39 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSD   39 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHc--cCCeEEccH
Confidence            45689999999999999999743  234444444

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.71  E-value=0.0042  Score=63.07  Aligned_cols=26  Identities=38%  Similarity=0.427  Sum_probs=22.8

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      ...+++|.||+|||||||++.|+..+
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34578999999999999999999866

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=95.71  E-value=0.0052  Score=62.72  Aligned_cols=27  Identities=26%  Similarity=0.393  Sum_probs=23.6

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      .-.+++|.||||||||||.+.|...+.
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            445789999999999999999998764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.68  E-value=0.0044  Score=62.91  Aligned_cols=26  Identities=42%  Similarity=0.597  Sum_probs=23.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ...+++|.||+|||||||++.|+..+
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34579999999999999999999876

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=95.65  E-value=0.0058  Score=61.35  Aligned_cols=26  Identities=27%  Similarity=0.290  Sum_probs=23.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      ..+|+|+||||||||||++.|.+.+.
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            46899999999999999999988764

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.64  E-value=0.0053  Score=65.30  Aligned_cols=34  Identities=29%  Similarity=0.336  Sum_probs=28.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM   93 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~   93 (818)
                      +.+..+.+.||+|+|||++|+.+|+.+|..++..
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v   67 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMM   67 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            4567888999999999999999999999766544

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.64  E-value=0.015  Score=62.71  Aligned_cols=55  Identities=24%  Similarity=0.316  Sum_probs=37.2

Q ss_pred             ccccch--hhHHHHHHHHHHHH-----------hcCCcEEEEEeCCCCCcHHHHHHHHHHHh-CCeEEe
Q 003460           38 HASFDH--GYYLLVKSIQELRE-----------KKGGIVTVGIGGPSGSGKTSLAEKLASVI-GCTLIS   92 (818)
Q Consensus        38 ~~s~~~--~~~~l~~~i~~~~~-----------~~~~~~iIgI~G~sGSGKSTlA~~La~~L-g~~vI~   92 (818)
                      .++|++  +.....+.++....           ....+.-|.|.||+|+|||++|+.++..+ +..++.
T Consensus         8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~   76 (322)
T 1xwi_A            8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS   76 (322)
T ss_dssp             CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEE
T ss_pred             CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEE
Confidence            466777  44555555543331           01234568899999999999999999988 665543

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.62  E-value=0.014  Score=64.35  Aligned_cols=41  Identities=24%  Similarity=0.227  Sum_probs=32.1

Q ss_pred             HHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEe
Q 003460           52 IQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLIS   92 (818)
Q Consensus        52 i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~   92 (818)
                      +....-.-+...+|+|.|++||||||+++.|+..++..++.
T Consensus       159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            33333344566799999999999999999999988877665

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=95.61  E-value=0.0048  Score=71.15  Aligned_cols=39  Identities=21%  Similarity=0.428  Sum_probs=31.9

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK  553 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~  553 (818)
                      ..+.+|.++|.+||||||+|+.|+..++     +.+++.|++-.
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~   76 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRR   76 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHH
Confidence            4578899999999999999999999884     34577888543

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.58  E-value=0.0066  Score=58.67  Aligned_cols=27  Identities=30%  Similarity=0.463  Sum_probs=24.1

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      ..--+++|.||+|||||||.+.|+..+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            445689999999999999999999877

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=95.57  E-value=0.016  Score=56.34  Aligned_cols=38  Identities=24%  Similarity=0.262  Sum_probs=27.6

Q ss_pred             HHHHHHHHHcCC--CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          504 VQAIQALLENKG--LPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       504 ~~~i~~l~~~~~--~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      +..++....+..  ....++|.||+||||||+++.++..+
T Consensus        23 ~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           23 LLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             HHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            344444444332  34678999999999999999999866

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.56  E-value=0.017  Score=55.60  Aligned_cols=25  Identities=36%  Similarity=0.387  Sum_probs=22.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      +..|.|.|++|+||||+++.+++.+
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4457899999999999999999876

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.56  E-value=0.0031  Score=65.82  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=27.8

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHh-CCcccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVS  547 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~l-g~~vis  547 (818)
                      .++.+|.|.|++||||||+++.|++.+ +..+++
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~   55 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP   55 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence            467899999999999999999999988 555553

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.53  E-value=0.017  Score=62.13  Aligned_cols=34  Identities=24%  Similarity=0.406  Sum_probs=28.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM   93 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~   93 (818)
                      .....|.|.|++|+|||++|+.++..++..++..
T Consensus        53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~   86 (338)
T 3pfi_A           53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTT   86 (338)
T ss_dssp             SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence            4445689999999999999999999998765543

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.50  E-value=0.014  Score=64.56  Aligned_cols=41  Identities=24%  Similarity=0.342  Sum_probs=31.6

Q ss_pred             HHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 003460          507 IQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS  547 (818)
Q Consensus       507 i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis  547 (818)
                      ++.....-....+|+|.||+||||||+++.|+..++..+++
T Consensus       159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            33333355566789999999999999999999988755554

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=95.49  E-value=0.0089  Score=62.99  Aligned_cols=30  Identities=43%  Similarity=0.656  Sum_probs=26.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460           65 VGIGGPSGSGKTSLAEKLASVIGCTLISME   94 (818)
Q Consensus        65 IgI~G~sGSGKSTlA~~La~~Lg~~vI~~D   94 (818)
                      |+|.||+||||||+++.|+..++...+..+
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~   76 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGLNFISVK   76 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCCCEEEEE
Confidence            999999999999999999999887655443

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.47  E-value=0.008  Score=58.09  Aligned_cols=27  Identities=30%  Similarity=0.422  Sum_probs=24.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      +..-+++|.|+.|||||||.+.|+..+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            455789999999999999999999876

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.45  E-value=0.011  Score=62.99  Aligned_cols=35  Identities=34%  Similarity=0.389  Sum_probs=29.4

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE  549 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D  549 (818)
                      ..+..|.|.||+|+||||+|+.++..++...++.+
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~   81 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK   81 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence            45667889999999999999999999987666544

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.45  E-value=0.019  Score=60.18  Aligned_cols=29  Identities=38%  Similarity=0.518  Sum_probs=25.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460           65 VGIGGPSGSGKTSLAEKLASVIGCTLISM   93 (818)
Q Consensus        65 IgI~G~sGSGKSTlA~~La~~Lg~~vI~~   93 (818)
                      |+|.|++||||||+++.++..++...+..
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~  104 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEARVPFITA  104 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence            89999999999999999999887555443

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=95.44  E-value=0.0069  Score=60.32  Aligned_cols=32  Identities=38%  Similarity=0.790  Sum_probs=26.4

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHh---CCcccccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIV---GCEVVSLESYFK  553 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~l---g~~vis~Ddfy~  553 (818)
                      +|+|.|++||||||+.+.|+..+   |   +..|.|+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~~~~G---i~~~g~~~   37 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVLKSSG---VPVDGFYT   37 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTT---CCCEEEEC
T ss_pred             EEEEECCCCChHHHHHHHHHhhcccCC---EEEcCEec
Confidence            58999999999999999999876   4   55666554

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.41  E-value=0.004  Score=61.06  Aligned_cols=24  Identities=33%  Similarity=0.602  Sum_probs=22.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .+|+|+|++|||||||++.|...+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999998876

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.41  E-value=0.014  Score=62.40  Aligned_cols=55  Identities=15%  Similarity=0.166  Sum_probs=40.3

Q ss_pred             ccch--hhHHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460           40 SFDH--GYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME   94 (818)
Q Consensus        40 s~~~--~~~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D   94 (818)
                      +|++  +....++.+....+....+..+.+.|++|+||||+++.+++.++..++..+
T Consensus        24 ~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~   80 (324)
T 3u61_B           24 TIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN   80 (324)
T ss_dssp             STTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred             CHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence            4555  444556666665565555667889999999999999999999987665444

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.40  E-value=0.018  Score=63.00  Aligned_cols=32  Identities=34%  Similarity=0.447  Sum_probs=27.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEe
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLIS   92 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~   92 (818)
                      .+.-|.|.|++|+|||++|+.++..+++.++.
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~  147 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFS  147 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence            45678999999999999999999999877653

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.40  E-value=0.016  Score=55.83  Aligned_cols=25  Identities=36%  Similarity=0.347  Sum_probs=22.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ...|.|.|++|+||||+++.+++.+
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4456899999999999999999877

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=95.38  E-value=0.02  Score=55.74  Aligned_cols=25  Identities=32%  Similarity=0.295  Sum_probs=22.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ...++|.|++||||||+++.++..+
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999998866

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.36  E-value=0.0084  Score=64.31  Aligned_cols=26  Identities=27%  Similarity=0.302  Sum_probs=23.8

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      ++-+|+|.||+||||||+++.|+..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            56799999999999999999999876

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=95.36  E-value=0.0078  Score=63.44  Aligned_cols=30  Identities=43%  Similarity=0.655  Sum_probs=25.5

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLE  549 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~vis~D  549 (818)
                      |+|.||+|||||||++.|+..++...+..+
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~   76 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGLNFISVK   76 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCCCEEEEE
Confidence            899999999999999999998876554443

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.36  E-value=0.019  Score=57.97  Aligned_cols=45  Identities=18%  Similarity=0.356  Sum_probs=32.6

Q ss_pred             HHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 003460          504 VQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL  548 (818)
Q Consensus       504 ~~~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~  548 (818)
                      +..++......++..-+.|.||+|+||||+|..|++.++-.+++.
T Consensus        45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~f   89 (212)
T 1tue_A           45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISF   89 (212)
T ss_dssp             HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCC
T ss_pred             HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeE
Confidence            445555555543344588999999999999999999886555543

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.36  E-value=0.0091  Score=58.70  Aligned_cols=26  Identities=35%  Similarity=0.443  Sum_probs=22.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .+.+|+|+|++||||||+++.|...+
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            35789999999999999999998765

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.35  E-value=0.016  Score=62.78  Aligned_cols=30  Identities=37%  Similarity=0.515  Sum_probs=26.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeE
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTL   90 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~v   90 (818)
                      .+-.++|.||+|+||||+++.++..+|+.+
T Consensus        50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~   79 (334)
T 1in4_A           50 VLDHVLLAGPPGLGKTTLAHIIASELQTNI   79 (334)
T ss_dssp             CCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence            345689999999999999999999998754

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=95.34  E-value=0.0092  Score=56.93  Aligned_cols=26  Identities=19%  Similarity=0.207  Sum_probs=22.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ....++|.|++||||||+++.++..+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            34578999999999999999999876

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.33  E-value=0.025  Score=59.00  Aligned_cols=34  Identities=38%  Similarity=0.534  Sum_probs=28.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM   93 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~   93 (818)
                      ..+.-|.|.|++|+|||++|+.++..++.+++..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i   95 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   95 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            4567899999999999999999999998765543

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.33  E-value=0.015  Score=62.20  Aligned_cols=45  Identities=18%  Similarity=0.366  Sum_probs=33.8

Q ss_pred             HHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 003460          504 VQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL  548 (818)
Q Consensus       504 ~~~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~  548 (818)
                      +..++........|.++.+.||+|+||||+++.+++.++..++.+
T Consensus        35 ~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i   79 (324)
T 3u61_B           35 KETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFV   79 (324)
T ss_dssp             HHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred             HHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            344445555556667788899999999999999999987555443

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.32  E-value=0.022  Score=62.27  Aligned_cols=39  Identities=28%  Similarity=0.531  Sum_probs=31.1

Q ss_pred             HhcCCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccc
Q 003460           57 EKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMEN   95 (818)
Q Consensus        57 ~~~~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~   95 (818)
                      ...++..+|+|+|.+|+||||++..|+..+   |  +.+++.|.
T Consensus        74 ~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp  117 (355)
T 3p32_A           74 PDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP  117 (355)
T ss_dssp             GGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred             hhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence            344677899999999999999999998876   3  45677764

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.31  E-value=0.018  Score=58.15  Aligned_cols=45  Identities=16%  Similarity=0.270  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEe
Q 003460           48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLIS   92 (818)
Q Consensus        48 l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~   92 (818)
                      .+..++...+..++...+.|.||+|+||||+|..|+..++..+++
T Consensus        44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~   88 (212)
T 1tue_A           44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS   88 (212)
T ss_dssp             HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence            455555555555555569999999999999999999988655544

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.30  E-value=0.0055  Score=60.05  Aligned_cols=24  Identities=46%  Similarity=0.664  Sum_probs=21.8

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      .+|+|.|+||||||||++.|...+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            379999999999999999998876

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=95.27  E-value=0.016  Score=62.03  Aligned_cols=26  Identities=35%  Similarity=0.377  Sum_probs=23.8

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .+.+|+|.|++||||||+++.|+..+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999999876

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=95.26  E-value=0.011  Score=64.05  Aligned_cols=28  Identities=36%  Similarity=0.468  Sum_probs=25.3

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      .+++.+|+|.||+||||||+++.|+..+
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3568999999999999999999999876

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=95.25  E-value=0.016  Score=62.83  Aligned_cols=27  Identities=33%  Similarity=0.330  Sum_probs=24.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      +++.+|+|.|++||||||+++.|+..+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999999876

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.24  E-value=0.0071  Score=62.32  Aligned_cols=24  Identities=38%  Similarity=0.600  Sum_probs=21.2

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+|||||||.+.|+..+
T Consensus        32 e~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           32 EFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC
Confidence            479999999999999999987654

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.24  E-value=0.013  Score=62.72  Aligned_cols=26  Identities=31%  Similarity=0.257  Sum_probs=23.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ++.+|+|.|++||||||+++.|+..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            45799999999999999999999876

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.24  E-value=0.013  Score=62.82  Aligned_cols=37  Identities=30%  Similarity=0.505  Sum_probs=30.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEecccee
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR   97 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~   97 (818)
                      .+.+|+|+|++||||||++..|+..+   |  +.+++.|-+.
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r  144 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR  144 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence            46799999999999999999999876   3  4556777653

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.21  E-value=0.01  Score=58.27  Aligned_cols=25  Identities=28%  Similarity=0.408  Sum_probs=22.3

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      ..+|+|+|++||||||+++.|...+
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            4578999999999999999998765

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.21  E-value=0.017  Score=62.18  Aligned_cols=35  Identities=23%  Similarity=0.325  Sum_probs=27.7

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE  549 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D  549 (818)
                      ..+.-|.|.|++|+||||+|+.++..++..++..+
T Consensus        53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~   87 (338)
T 3pfi_A           53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTA   87 (338)
T ss_dssp             SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence            34445788999999999999999999886654433

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.21  E-value=0.02  Score=57.13  Aligned_cols=40  Identities=23%  Similarity=0.185  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        48 l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      .++.+.........+..+.|.|++|+||||+++.+++.++
T Consensus        31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4444444444444445789999999999999999998774

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.21  E-value=0.011  Score=61.07  Aligned_cols=32  Identities=34%  Similarity=0.467  Sum_probs=26.5

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL  548 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~  548 (818)
                      |.-|.|.||+|+||||+|+.++..++..++.+
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i   76 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI   76 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence            44578999999999999999999988665443

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.20  E-value=0.011  Score=63.39  Aligned_cols=27  Identities=30%  Similarity=0.538  Sum_probs=24.4

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      +.+.+|+|+|++||||||++..|+..+
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            357899999999999999999999876

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.20  E-value=0.022  Score=56.75  Aligned_cols=32  Identities=28%  Similarity=0.292  Sum_probs=25.6

Q ss_pred             HHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          511 LENKGLPVIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       511 ~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      ......+..+.|.|++|+||||+++.+++.++
T Consensus        39 l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           39 LSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             HHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             HHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            33444455788999999999999999998775

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.17  E-value=0.019  Score=56.81  Aligned_cols=24  Identities=33%  Similarity=0.315  Sum_probs=21.7

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      .-|.|.|++|+||||+|+.++..+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            567789999999999999999876

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.15  E-value=0.02  Score=55.07  Aligned_cols=26  Identities=23%  Similarity=0.266  Sum_probs=22.2

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      .+..|.|.|++|+||||+++.+++.+
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            34456789999999999999999876

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.15  E-value=0.0065  Score=63.15  Aligned_cols=30  Identities=40%  Similarity=0.530  Sum_probs=25.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISM   93 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~   93 (818)
                      -|.|.|++|+|||++|+.++..++.+++..
T Consensus        46 ~vll~G~~GtGKT~la~~la~~~~~~~~~v   75 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGEAHVPFFSM   75 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence            378999999999999999999988665443

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.14  E-value=0.01  Score=62.15  Aligned_cols=26  Identities=27%  Similarity=0.492  Sum_probs=22.8

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      .--+|+|+||+||||||+.+.|...+
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHhC
Confidence            44689999999999999999998765

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.09  E-value=0.0089  Score=61.60  Aligned_cols=25  Identities=36%  Similarity=0.474  Sum_probs=21.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .-++||.|++|||||||.+.|+..+
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3579999999999999999997654

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.07  E-value=0.019  Score=62.85  Aligned_cols=31  Identities=32%  Similarity=0.512  Sum_probs=26.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISM   93 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~   93 (818)
                      .-|.|.|++|+|||++|+.++..++..++..
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~v  115 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATEANSTFFSV  115 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence            4588899999999999999999999876544

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.05  E-value=0.015  Score=60.98  Aligned_cols=27  Identities=26%  Similarity=0.460  Sum_probs=23.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ...-+|+|+||+||||||+.+.|+..+
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            445689999999999999999998765

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.05  E-value=0.008  Score=59.45  Aligned_cols=26  Identities=27%  Similarity=0.285  Sum_probs=22.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeE
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTL   90 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~v   90 (818)
                      +|.|+|++||||||+|..|+.. |.++
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~   26 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD-APQV   26 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS-CSSE
T ss_pred             CEEEECCCCCcHHHHHHHHHhc-CCCe
Confidence            3789999999999999999876 6443

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.04  E-value=0.0058  Score=60.45  Aligned_cols=26  Identities=23%  Similarity=0.299  Sum_probs=21.4

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEV  545 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~v  545 (818)
                      +|.|+|++||||||+|..|+.. +..+
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~   26 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD-APQV   26 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS-CSSE
T ss_pred             CEEEECCCCCcHHHHHHHHHhc-CCCe
Confidence            3678999999999999999865 5443

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=95.03  E-value=0.025  Score=60.66  Aligned_cols=35  Identities=20%  Similarity=0.361  Sum_probs=28.1

Q ss_pred             HhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEE
Q 003460           57 EKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLI   91 (818)
Q Consensus        57 ~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI   91 (818)
                      -.-++.-+++|.|++|||||||++.|+..+.-.|+
T Consensus       121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~  155 (305)
T 2v9p_A          121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVL  155 (305)
T ss_dssp             HTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEEE
T ss_pred             EEecCCCEEEEECCCCCcHHHHHHHHhhhcCceEE
Confidence            34456678999999999999999999987754443

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.01  E-value=0.02  Score=61.86  Aligned_cols=30  Identities=37%  Similarity=0.483  Sum_probs=25.5

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCE  544 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~  544 (818)
                      ..+-.+++.||+|+||||+++.++..+++.
T Consensus        49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~   78 (334)
T 1in4_A           49 EVLDHVLLAGPPGLGKTTLAHIIASELQTN   78 (334)
T ss_dssp             CCCCCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            344568899999999999999999998754

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=95.01  E-value=0.014  Score=62.59  Aligned_cols=26  Identities=35%  Similarity=0.511  Sum_probs=24.0

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      ++-+|+|.|++||||||+++.|+..+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999999876

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.00  E-value=0.02  Score=62.54  Aligned_cols=35  Identities=29%  Similarity=0.431  Sum_probs=28.5

Q ss_pred             HHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          507 IQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       507 i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      ++.+....+++.+|+|+|.+|+||||++..|+..+
T Consensus        69 ~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           69 LLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             HHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            33443455678999999999999999999999876

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=94.98  E-value=0.011  Score=59.40  Aligned_cols=26  Identities=46%  Similarity=0.586  Sum_probs=22.7

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      .--+++|.||+|||||||++.|+..+
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            44689999999999999999998743

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=94.97  E-value=0.026  Score=60.42  Aligned_cols=25  Identities=28%  Similarity=0.307  Sum_probs=22.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ...+.|.|++|+||||+++.++..+
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHH
Confidence            4568899999999999999999877

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=94.95  E-value=0.0086  Score=61.20  Aligned_cols=24  Identities=38%  Similarity=0.443  Sum_probs=21.1

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+|||||||.+.|+..+
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            379999999999999999987654

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.95  E-value=0.022  Score=65.45  Aligned_cols=33  Identities=27%  Similarity=0.454  Sum_probs=28.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISME   94 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D   94 (818)
                      +..+.|.|++|+||||+|+.+++.+|+.++..+
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~in  109 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQN  109 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence            357899999999999999999999998776543

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=94.95  E-value=0.024  Score=54.41  Aligned_cols=25  Identities=24%  Similarity=0.234  Sum_probs=21.8

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      +.-|.|.|++|+||||+|+.+++.+
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4456789999999999999999877

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=94.94  E-value=0.011  Score=61.03  Aligned_cols=24  Identities=33%  Similarity=0.515  Sum_probs=21.7

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+|||||||.+.|+..+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            689999999999999999998754

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=94.93  E-value=0.022  Score=62.39  Aligned_cols=26  Identities=35%  Similarity=0.377  Sum_probs=23.8

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .+.+|+|.|++||||||+++.|+..+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            46799999999999999999999876

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=94.92  E-value=0.014  Score=65.58  Aligned_cols=38  Identities=34%  Similarity=0.475  Sum_probs=31.3

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFK  553 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddfy~  553 (818)
                      +|.+|.++|++||||||++..|+..+   |  +.++++|-|.-
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~  141 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP  141 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence            58999999999999999999999876   2  45677776543

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=94.91  E-value=0.014  Score=65.60  Aligned_cols=36  Identities=42%  Similarity=0.643  Sum_probs=29.6

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESY  551 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddf  551 (818)
                      +|.+|+++|++||||||++..|+..+   |  +.+++.|-|
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~  136 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY  136 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence            58899999999999999999999877   2  445667654

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=94.90  E-value=0.013  Score=58.42  Aligned_cols=23  Identities=43%  Similarity=0.677  Sum_probs=21.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHh
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      +|+|.|++||||||+.+.|+..+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            58999999999999999999876

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=94.90  E-value=0.01  Score=56.62  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=22.2

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      .-.++|.|++|||||||++.++..+
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3468899999999999999999876

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=94.90  E-value=0.015  Score=59.87  Aligned_cols=32  Identities=31%  Similarity=0.405  Sum_probs=26.5

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS  547 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis  547 (818)
                      .+.-|.|.||+|+||||+|+.++..++..++.
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~   69 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLA   69 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            34557799999999999999999998866543

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=94.90  E-value=0.013  Score=60.47  Aligned_cols=29  Identities=34%  Similarity=0.475  Sum_probs=24.6

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCccccc
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEVVSL  548 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~vis~  548 (818)
                      |+|.||+||||||+++.++..++...+..
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~   80 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEARVPFITA   80 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            88999999999999999999887554443

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=94.88  E-value=0.019  Score=62.97  Aligned_cols=24  Identities=33%  Similarity=0.563  Sum_probs=21.7

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -+|+|+||+||||||+.+.|...+
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcc
Confidence            389999999999999999998765

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=94.87  E-value=0.01  Score=62.70  Aligned_cols=24  Identities=29%  Similarity=0.512  Sum_probs=21.3

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+|||||||.+.|+..+
T Consensus        35 e~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           35 EVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC
Confidence            379999999999999999997655

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.87  E-value=0.03  Score=55.22  Aligned_cols=38  Identities=29%  Similarity=0.433  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        48 l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ..+.+.........+ .+.|.|++|+||||+++.+++.+
T Consensus        25 ~~~~l~~~l~~~~~~-~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           25 VIQRLKGYVERKNIP-HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             HHHHHHHHHHTTCCC-CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence            444444444433322 28999999999999999999876

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=94.86  E-value=0.027  Score=56.69  Aligned_cols=49  Identities=18%  Similarity=0.272  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccce
Q 003460           47 LLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENY   96 (818)
Q Consensus        47 ~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~   96 (818)
                      ..++.+....... ....|.|.|++|+||||+++.++..++     +..++.+++
T Consensus        38 ~~~~~l~~~~~~~-~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~   91 (242)
T 3bos_A           38 ELIGALKSAASGD-GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH   91 (242)
T ss_dssp             HHHHHHHHHHHTC-SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             HHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence            3444554444432 456688999999999999999998764     244555554

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=94.86  E-value=0.013  Score=58.89  Aligned_cols=25  Identities=40%  Similarity=0.429  Sum_probs=22.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHH
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASV   85 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~   85 (818)
                      ..-+++|.|++|||||||++.|+..
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999999874

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=94.85  E-value=0.022  Score=59.60  Aligned_cols=33  Identities=30%  Similarity=0.414  Sum_probs=27.2

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS  547 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis  547 (818)
                      ..+.-|.|.||+|+||||+|+.++..++..++.
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~   81 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIR   81 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            345567889999999999999999999866543

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=94.84  E-value=0.011  Score=62.24  Aligned_cols=24  Identities=33%  Similarity=0.636  Sum_probs=21.3

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+|||||||.+.|+..+
T Consensus        38 e~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           38 EMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC
Confidence            479999999999999999997654

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=94.83  E-value=0.011  Score=67.23  Aligned_cols=38  Identities=18%  Similarity=0.308  Sum_probs=31.0

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF  552 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy  552 (818)
                      +.+.+|.+.|.+||||||+++.|+..++...++.|.|.
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~   74 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN   74 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence            45788999999999999999999998875556666554

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=94.82  E-value=0.021  Score=64.32  Aligned_cols=38  Identities=29%  Similarity=0.409  Sum_probs=31.8

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceec
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRV   98 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~   98 (818)
                      ++.+|+++|++||||||++..|+..+   |  +.++++|.|+.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~  141 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP  141 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence            47899999999999999999999866   3  55688887644

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=94.81  E-value=0.011  Score=60.51  Aligned_cols=24  Identities=42%  Similarity=0.394  Sum_probs=21.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      -++||.|++|||||||.+.|+..+
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            479999999999999999997654

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=94.80  E-value=0.014  Score=60.35  Aligned_cols=24  Identities=29%  Similarity=0.530  Sum_probs=21.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      -++||.|++|||||||.+.|+..+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            579999999999999999998755

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=94.78  E-value=0.036  Score=62.51  Aligned_cols=56  Identities=23%  Similarity=0.300  Sum_probs=38.7

Q ss_pred             cccccch--hhHHHHHHHHHHHH-----------hcCCcEEEEEeCCCCCcHHHHHHHHHHHh-CCeEEe
Q 003460           37 VHASFDH--GYYLLVKSIQELRE-----------KKGGIVTVGIGGPSGSGKTSLAEKLASVI-GCTLIS   92 (818)
Q Consensus        37 ~~~s~~~--~~~~l~~~i~~~~~-----------~~~~~~iIgI~G~sGSGKSTlA~~La~~L-g~~vI~   92 (818)
                      ..++|++  +.....+.+.....           ....+.-|.|.||+|+|||++|+.++..+ +..++.
T Consensus       129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~  198 (444)
T 2zan_A          129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS  198 (444)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEE
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEE
Confidence            3567887  55555555544331           12234568899999999999999999988 665543

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=94.77  E-value=0.028  Score=59.23  Aligned_cols=35  Identities=29%  Similarity=0.523  Sum_probs=28.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEE--eccce
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLI--SMENY   96 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI--~~D~~   96 (818)
                      +.-|.|.|++|+|||++|+.+++.++..++  ++..+
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~   86 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF   86 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhc
Confidence            445779999999999999999999987654  44443

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.77  E-value=0.035  Score=54.71  Aligned_cols=22  Identities=36%  Similarity=0.560  Sum_probs=20.5

Q ss_pred             EeeeCCCCccHHHHHHHHHHHh
Q 003460          520 VGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~l  541 (818)
                      +.|.|++|+||||+++.+++.+
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7889999999999999999876

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=94.77  E-value=0.012  Score=60.81  Aligned_cols=24  Identities=29%  Similarity=0.482  Sum_probs=21.1

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+|||||||.+.|+..+
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           32 ALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            479999999999999999987654

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=94.77  E-value=0.018  Score=62.96  Aligned_cols=34  Identities=35%  Similarity=0.510  Sum_probs=28.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN   95 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~   95 (818)
                      +.-|.+.||+|+|||++|+.+++.++.+++..+.
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~   84 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMADA   84 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEech
Confidence            4568899999999999999999999987765543

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=94.74  E-value=0.0081  Score=69.67  Aligned_cols=37  Identities=24%  Similarity=0.247  Sum_probs=29.5

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhC------Ccccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVG------CEVVSLESY  551 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg------~~vis~Ddf  551 (818)
                      .+..+|+|+|++||||||+++.|+..++      +.++..|++
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence            3567899999999999999999999884      224566655

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=94.72  E-value=0.019  Score=63.03  Aligned_cols=26  Identities=35%  Similarity=0.511  Sum_probs=24.1

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      ++-+|+|.|++||||||+++.|+..+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            57899999999999999999999876

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=94.71  E-value=0.011  Score=59.74  Aligned_cols=23  Identities=52%  Similarity=0.427  Sum_probs=20.7

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANI  540 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~  540 (818)
                      -+++|.||+|||||||.+.|+..
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            37899999999999999999875

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=94.71  E-value=0.045  Score=57.02  Aligned_cols=35  Identities=34%  Similarity=0.425  Sum_probs=28.9

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL  548 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~  548 (818)
                      ...+.-|.|.||+|+|||++|+.++..++..++..
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i   95 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   95 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            34567788999999999999999999988765543

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=94.71  E-value=0.017  Score=60.94  Aligned_cols=32  Identities=28%  Similarity=0.325  Sum_probs=26.9

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS  547 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis  547 (818)
                      .+.-|.|.||+|+||||+|+.++..++..++.
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~   84 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSATFLN   84 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence            35568899999999999999999998866543

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=94.70  E-value=0.012  Score=61.63  Aligned_cols=24  Identities=29%  Similarity=0.454  Sum_probs=21.3

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+|||||||.+.|+..+
T Consensus        33 e~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           33 DVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            479999999999999999987654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=94.70  E-value=0.013  Score=61.90  Aligned_cols=24  Identities=25%  Similarity=0.483  Sum_probs=21.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      -++||.|++|||||||.+.|+..+
T Consensus        35 e~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           35 EVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC
Confidence            469999999999999999997755

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=94.68  E-value=0.013  Score=61.52  Aligned_cols=25  Identities=36%  Similarity=0.531  Sum_probs=21.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .-++||.|++|||||||.+.|+..+
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3479999999999999999997654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=94.68  E-value=0.015  Score=60.52  Aligned_cols=23  Identities=30%  Similarity=0.572  Sum_probs=20.7

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANI  540 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~  540 (818)
                      -++||.|++|||||||.+.|+..
T Consensus        30 e~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           30 EVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37999999999999999999864

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=94.68  E-value=0.015  Score=58.87  Aligned_cols=23  Identities=48%  Similarity=0.364  Sum_probs=20.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASV   85 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~   85 (818)
                      -+++|.|++|||||||.+.|+..
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999875

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=94.68  E-value=0.037  Score=61.04  Aligned_cols=57  Identities=28%  Similarity=0.392  Sum_probs=39.6

Q ss_pred             ccccch--hhHHHHHHHHHHHHh-----------cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460           38 HASFDH--GYYLLVKSIQELREK-----------KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME   94 (818)
Q Consensus        38 ~~s~~~--~~~~l~~~i~~~~~~-----------~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D   94 (818)
                      .++|++  +.....+.+......           ...+.-|.|.|++|+|||++|+.++..++..++..+
T Consensus       111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~  180 (389)
T 3vfd_A          111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNIS  180 (389)
T ss_dssp             CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEee
Confidence            456777  555555555443311           123457899999999999999999999998776443

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=94.66  E-value=0.022  Score=64.04  Aligned_cols=37  Identities=38%  Similarity=0.475  Sum_probs=30.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEecccee
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR   97 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~   97 (818)
                      ++.+|+++|++||||||++..|+..+   |  +.++++|-|.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r  137 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR  137 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence            47899999999999999999999876   3  4567888653

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=94.66  E-value=0.026  Score=60.49  Aligned_cols=30  Identities=20%  Similarity=0.382  Sum_probs=25.3

Q ss_pred             cCCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      .-++--+|+|.||+|||||||++.|...+.
T Consensus       122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~  151 (305)
T 2v9p_A          122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLG  151 (305)
T ss_dssp             TCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred             EecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence            444556899999999999999999998774

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=94.65  E-value=0.013  Score=60.87  Aligned_cols=24  Identities=38%  Similarity=0.649  Sum_probs=21.1

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+|||||||.+.|+..+
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            379999999999999999987654

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=94.63  E-value=0.014  Score=60.23  Aligned_cols=25  Identities=32%  Similarity=0.411  Sum_probs=21.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .-+++|.|++|||||||.+.|+..+
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           31 GALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3579999999999999999997644

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=94.62  E-value=0.013  Score=60.57  Aligned_cols=25  Identities=28%  Similarity=0.595  Sum_probs=21.9

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      --+++|.||+|||||||.+.|+..+
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           28 NSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3589999999999999999998654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=94.59  E-value=0.018  Score=60.68  Aligned_cols=24  Identities=29%  Similarity=0.416  Sum_probs=22.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      +.|+|.|++|||||||.+.|+...
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            679999999999999999998865

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.59  E-value=0.014  Score=60.37  Aligned_cols=24  Identities=38%  Similarity=0.567  Sum_probs=21.2

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+|||||||.+.|+..+
T Consensus        33 e~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           33 QIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            379999999999999999987654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=94.57  E-value=0.014  Score=61.01  Aligned_cols=24  Identities=33%  Similarity=0.570  Sum_probs=21.2

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+|||||||.+.|+..+
T Consensus        34 e~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           34 DVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            379999999999999999987654

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=94.55  E-value=0.045  Score=62.29  Aligned_cols=31  Identities=29%  Similarity=0.457  Sum_probs=26.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISM   93 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~   93 (818)
                      .-|.|.||+|+||||+|+.++..++++++..
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~i   80 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGEANVPFFHI   80 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence            3488999999999999999999999876544

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=94.55  E-value=0.015  Score=60.94  Aligned_cols=26  Identities=27%  Similarity=0.310  Sum_probs=22.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ..-++||.|++|||||||.+.|+..+
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34579999999999999999997654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=94.54  E-value=0.018  Score=60.64  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=22.1

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      +.|||.|++|||||||.+.|....
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            679999999999999999999865

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=94.54  E-value=0.028  Score=60.68  Aligned_cols=37  Identities=22%  Similarity=0.391  Sum_probs=29.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccce
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENY   96 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~   96 (818)
                      .++.+|+|+|++||||||++..|+..+   |  +.+++.|-+
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~  144 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF  144 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            346799999999999999999999876   3  456677754

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=94.53  E-value=0.03  Score=63.77  Aligned_cols=27  Identities=30%  Similarity=0.321  Sum_probs=24.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ....+|+|.|++||||||+++.|+..+
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            346799999999999999999999876

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=94.53  E-value=0.014  Score=61.22  Aligned_cols=24  Identities=33%  Similarity=0.513  Sum_probs=21.3

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+|||||||.+.|+..+
T Consensus        51 ei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           51 EVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEcCCCCcHHHHHHHHHcCC
Confidence            479999999999999999987654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=94.52  E-value=0.014  Score=59.75  Aligned_cols=24  Identities=29%  Similarity=0.546  Sum_probs=21.3

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -+++|.||+|||||||.+.|+..+
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           35 QLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            379999999999999999997655

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=94.51  E-value=0.029  Score=67.73  Aligned_cols=60  Identities=22%  Similarity=0.326  Sum_probs=41.5

Q ss_pred             Ccccccch--hhHHHHHHHHHHH----Hhc--------CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460           36 PVHASFDH--GYYLLVKSIQELR----EKK--------GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN   95 (818)
Q Consensus        36 ~~~~s~~~--~~~~l~~~i~~~~----~~~--------~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~   95 (818)
                      ...++|++  |+....+.+++..    ..+        ..+.=|.+.||+|+|||++|+.+|..+|+.++..+.
T Consensus       198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~  271 (806)
T 3cf2_A          198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLING  271 (806)
T ss_dssp             SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEH
T ss_pred             CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEh
Confidence            34577887  4444444443322    111        345679999999999999999999999988776543

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=94.51  E-value=0.018  Score=59.87  Aligned_cols=23  Identities=35%  Similarity=0.566  Sum_probs=20.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASV   85 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~   85 (818)
                      -+++|.|++|||||||.+.|+..
T Consensus        30 e~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           30 EVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999999764

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=94.51  E-value=0.033  Score=56.00  Aligned_cols=27  Identities=26%  Similarity=0.270  Sum_probs=22.8

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      .+..|.|.||+|+||||+++.++..++
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            345577899999999999999998764

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=94.50  E-value=0.016  Score=60.00  Aligned_cols=27  Identities=26%  Similarity=0.447  Sum_probs=23.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      +..-+++|.|++|||||||.+.|+..+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           26 QPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344689999999999999999998754

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=94.50  E-value=0.018  Score=60.34  Aligned_cols=29  Identities=34%  Similarity=0.475  Sum_probs=24.7

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCccccc
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEVVSL  548 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~vis~  548 (818)
                      |+|.||+||||||+++.|+..++...+.+
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~  104 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEARVPFITA  104 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence            88999999999999999999887554443

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=94.50  E-value=0.015  Score=60.27  Aligned_cols=24  Identities=38%  Similarity=0.605  Sum_probs=21.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      -++||.|++|||||||.+.|+..+
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            479999999999999999997654

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=94.50  E-value=0.016  Score=60.10  Aligned_cols=32  Identities=38%  Similarity=0.465  Sum_probs=26.1

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL  548 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~  548 (818)
                      +.-|.|.||+|+||||+|+.++..++..++.+
T Consensus        44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v   75 (268)
T 2r62_A           44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSM   75 (268)
T ss_dssp             CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence            33377899999999999999999988665543

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.49  E-value=0.025  Score=55.49  Aligned_cols=33  Identities=27%  Similarity=0.327  Sum_probs=28.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY   96 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~   96 (818)
                      .-|.|+|+||+||||+|..|.+ -|..+++-|..
T Consensus        17 ~gvli~G~SGaGKStlal~L~~-rG~~lvaDD~v   49 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALID-RGHQLVCDDVI   49 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHH-TTCEEEESSEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH-cCCeEecCCEE
Confidence            3489999999999999999987 48888877765

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=94.49  E-value=0.012  Score=59.68  Aligned_cols=23  Identities=35%  Similarity=0.709  Sum_probs=20.5

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHh
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      +++|.||+|||||||.+.|+..+
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999987654

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=94.48  E-value=0.017  Score=60.66  Aligned_cols=23  Identities=39%  Similarity=0.645  Sum_probs=20.8

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANI  540 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~  540 (818)
                      -++||.||+|||||||.+.|+..
T Consensus        47 e~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           47 EVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999999874

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.45  E-value=0.015  Score=60.73  Aligned_cols=24  Identities=33%  Similarity=0.690  Sum_probs=21.3

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+|||||||.+.|+..+
T Consensus        42 ei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           42 EIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            479999999999999999997654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.42  E-value=0.016  Score=59.74  Aligned_cols=25  Identities=28%  Similarity=0.416  Sum_probs=21.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .-+++|.|++|||||||.+.|+..+
T Consensus        32 Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           32 GQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3479999999999999999997654

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=94.40  E-value=0.03  Score=59.91  Aligned_cols=24  Identities=33%  Similarity=0.333  Sum_probs=21.2

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      .-+.|.||+|+||||+++.++..+
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHH
Confidence            346679999999999999999877

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=94.40  E-value=0.016  Score=60.67  Aligned_cols=24  Identities=25%  Similarity=0.452  Sum_probs=21.0

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+|||||||.+.|+..+
T Consensus        47 e~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           47 TTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhccC
Confidence            479999999999999999987644

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=94.40  E-value=0.017  Score=60.34  Aligned_cols=25  Identities=32%  Similarity=0.448  Sum_probs=21.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .-++||.|++|||||||.+.|+..+
T Consensus        33 Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           33 GDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3479999999999999999997654

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=94.39  E-value=0.016  Score=61.06  Aligned_cols=24  Identities=33%  Similarity=0.660  Sum_probs=21.3

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -+++|.||+|||||||.+.|+..+
T Consensus        46 e~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           46 KVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            479999999999999999987654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=94.39  E-value=0.017  Score=59.13  Aligned_cols=24  Identities=29%  Similarity=0.509  Sum_probs=21.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      -+++|.|++|||||||.+.|+..+
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           35 QLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            479999999999999999997654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=94.37  E-value=0.017  Score=60.55  Aligned_cols=26  Identities=35%  Similarity=0.368  Sum_probs=22.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ..-++||.|++|||||||.+.|+..+
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            34579999999999999999998755

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.37  E-value=0.045  Score=59.09  Aligned_cols=36  Identities=28%  Similarity=0.451  Sum_probs=26.1

Q ss_pred             HHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          506 AIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       506 ~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      .+........-|. +.+.||+|+||||+++.++..+.
T Consensus        36 ~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           36 TVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             HHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHc
Confidence            3333333433344 78899999999999999999764

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=94.35  E-value=0.024  Score=60.52  Aligned_cols=36  Identities=28%  Similarity=0.428  Sum_probs=29.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh----C--CeEEeccce
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI----G--CTLISMENY   96 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L----g--~~vI~~D~~   96 (818)
                      ++.+|+++|++||||||++..|+..+    |  +.+++.|.+
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~  145 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY  145 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence            45689999999999999999999765    4  456777765

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=94.35  E-value=0.02  Score=60.04  Aligned_cols=25  Identities=40%  Similarity=0.503  Sum_probs=21.8

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHH
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASV   85 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~   85 (818)
                      ..-+++|.|++|||||||.+.|+..
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3457999999999999999999764

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=94.34  E-value=0.026  Score=57.20  Aligned_cols=58  Identities=14%  Similarity=0.023  Sum_probs=37.2

Q ss_pred             cCCEEEEEEcChhHHHHHHHhcCccccCcccch--hhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460          628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRND  689 (818)
Q Consensus       628 ~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n~  689 (818)
                      ..|+.||+++|.++.+.|...|...   ...+.  ..|...++..|..+.... ....++|+.+
T Consensus       131 ~PDlvi~Ld~~~e~~~~Ri~~R~~~---dr~E~~~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~  190 (213)
T 4edh_A          131 RPDLTLVFDLPVEIGLARAAARGRL---DRFEQEDRRFFEAVRQTYLQRAAQA-PERYQVLDAG  190 (213)
T ss_dssp             CCSEEEEEECCHHHHHHHHCCCSSC---CTTTTSCHHHHHHHHHHHHHHHHHC-TTTEEEEETT
T ss_pred             CCCEEEEEeCCHHHHHHHHHhcCCc---CcccccHHHHHHHHHHHHHHHHHHC-CCcEEEEeCC
Confidence            4699999999999999998877421   11221  356667777777664322 1234666654

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=94.34  E-value=0.015  Score=59.04  Aligned_cols=24  Identities=33%  Similarity=0.641  Sum_probs=21.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      -+++|.|++|||||||.+.|+..+
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            469999999999999999997654

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=94.34  E-value=0.047  Score=53.95  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=22.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ..|.|.|++|+||||+|+.++..+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            678899999999999999999876

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=94.31  E-value=0.044  Score=62.64  Aligned_cols=34  Identities=26%  Similarity=0.375  Sum_probs=28.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM   93 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~   93 (818)
                      ..+.-|.|.|++|+|||++|+.++..++.+++..
T Consensus       236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~v  269 (489)
T 3hu3_A          236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI  269 (489)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred             CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            4456689999999999999999999998776543

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=94.31  E-value=0.017  Score=60.64  Aligned_cols=24  Identities=29%  Similarity=0.542  Sum_probs=21.2

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+|||||||.+.|+..+
T Consensus        34 e~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           34 ECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            479999999999999999987654

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=94.31  E-value=0.023  Score=56.99  Aligned_cols=25  Identities=20%  Similarity=0.359  Sum_probs=21.7

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      --+++|.|++|||||||++.++..+
T Consensus        23 G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           23 GFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999998644

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=94.30  E-value=0.021  Score=62.55  Aligned_cols=28  Identities=46%  Similarity=0.526  Sum_probs=24.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCe
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCT   89 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~   89 (818)
                      ...++|.|++|||||||++.|+..+...
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            4679999999999999999999987654

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.30  E-value=0.018  Score=60.08  Aligned_cols=25  Identities=32%  Similarity=0.555  Sum_probs=22.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .-++||.|++|||||||.+.|+..+
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3579999999999999999997754

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=94.29  E-value=0.025  Score=64.38  Aligned_cols=27  Identities=30%  Similarity=0.432  Sum_probs=24.4

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      +.+.+|+|.|++||||||+++.|+..+
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            357899999999999999999999876

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=94.28  E-value=0.017  Score=60.03  Aligned_cols=24  Identities=38%  Similarity=0.721  Sum_probs=21.1

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -+++|.||+|||||||.+.|+..+
T Consensus        27 e~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            379999999999999999987654

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=94.25  E-value=0.017  Score=61.03  Aligned_cols=24  Identities=25%  Similarity=0.209  Sum_probs=21.2

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+|||||||.+.|+..+
T Consensus        48 e~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           48 DKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            379999999999999999997654

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=94.25  E-value=0.044  Score=58.23  Aligned_cols=32  Identities=34%  Similarity=0.478  Sum_probs=26.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEE
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLI   91 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI   91 (818)
                      ..+..|.|.|++|+||||+|+.++..++..++
T Consensus        36 ~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~   67 (324)
T 1hqc_A           36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLR   67 (324)
T ss_dssp             SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            34456889999999999999999998886553

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=94.25  E-value=0.019  Score=60.11  Aligned_cols=25  Identities=32%  Similarity=0.426  Sum_probs=21.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .-+++|.|++|||||||.+.|+..+
T Consensus        46 Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           46 GTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccC
Confidence            3579999999999999999997654

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=94.24  E-value=0.027  Score=63.39  Aligned_cols=34  Identities=32%  Similarity=0.535  Sum_probs=29.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN   95 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~   95 (818)
                      +.-|.+.||+|+||||+|+.||..+++.++..|.
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~   83 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   83 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence            3458899999999999999999999988877664

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=94.24  E-value=0.02  Score=58.76  Aligned_cols=58  Identities=7%  Similarity=-0.034  Sum_probs=36.9

Q ss_pred             cCCEEEEEEcChhHHHHHHHhcCccccCcccc--hhhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460          628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS--QNDIMMTVFPMFQQHIEPHLVHAHLKIRND  689 (818)
Q Consensus       628 ~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~--~~~~~~~v~p~~~~~I~p~~~~ADivI~n~  689 (818)
                      ..|+.||+++|.++.+.|...|..   ....+  ...|...++..|..+.... ...-++|+.+
T Consensus       151 ~PDl~I~Ldv~~e~~~~Ri~~R~~---~dr~E~~~~ef~~rv~~~Y~~la~~~-~~~~~vIDa~  210 (227)
T 3v9p_A          151 QPDLTVLFDVPPQIASARRGAVRM---PDKFESESDAFFARTRAEYLRRAQEA-PHRFVIVDSS  210 (227)
T ss_dssp             CCSEEEEEECCSSCGGGTTTCCCC---C---CCHHHHHHHHHHHHHHHHHHHC-TTTEEEEETT
T ss_pred             CCCEEEEEeCCHHHHHHHHHhccC---ccchhhhhHHHHHHHHHHHHHHHHHh-cCCEEEEeCC
Confidence            469999999999999988877641   11122  1357777777887765432 1234566654

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=94.24  E-value=0.019  Score=60.49  Aligned_cols=26  Identities=31%  Similarity=0.473  Sum_probs=22.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ..-+++|.|++|||||||.+.|+..+
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            33579999999999999999997754

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=94.24  E-value=0.018  Score=59.98  Aligned_cols=24  Identities=29%  Similarity=0.473  Sum_probs=21.3

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+|||||||.+.|+..+
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            379999999999999999998754

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.22  E-value=0.024  Score=63.52  Aligned_cols=36  Identities=31%  Similarity=0.405  Sum_probs=30.6

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE  549 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D  549 (818)
                      ...|.=|.+.||+|+|||++|+++|..+++.++.++
T Consensus       203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~  238 (428)
T 4b4t_K          203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN  238 (428)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence            346777889999999999999999999998766554

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=94.21  E-value=0.031  Score=58.83  Aligned_cols=31  Identities=29%  Similarity=0.589  Sum_probs=25.2

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVS  547 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis  547 (818)
                      +.-|.+.||+|+|||++|+.+++.++..++.
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~   80 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFIK   80 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            3445679999999999999999999865443

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=94.20  E-value=0.028  Score=60.61  Aligned_cols=27  Identities=37%  Similarity=0.362  Sum_probs=24.4

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      +++.+|+|+|++||||||++..|+..+
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            357899999999999999999999876

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=94.19  E-value=0.028  Score=61.57  Aligned_cols=33  Identities=30%  Similarity=0.446  Sum_probs=28.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISME   94 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D   94 (818)
                      ..-|.+.|++|+||||+|+.|++.++.+++..+
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~  104 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD  104 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence            445889999999999999999999987766544

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=94.18  E-value=0.025  Score=62.00  Aligned_cols=33  Identities=24%  Similarity=0.449  Sum_probs=25.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHh----CCeEEeccc
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVI----GCTLISMEN   95 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~L----g~~vI~~D~   95 (818)
                      -+|+|+||+||||||+.+.|...+    +..++...+
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed  160 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIED  160 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccC
Confidence            399999999999999999998765    344554433

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=94.17  E-value=0.062  Score=53.68  Aligned_cols=27  Identities=48%  Similarity=0.598  Sum_probs=24.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .+..+|+|+|.+||||||++..|+..+
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            457899999999999999999998765

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=94.16  E-value=0.026  Score=57.35  Aligned_cols=28  Identities=21%  Similarity=0.110  Sum_probs=25.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGC   88 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~   88 (818)
                      +..+|.+.|++||||||+++.|++.++.
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            3568999999999999999999999986

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=94.14  E-value=0.056  Score=61.04  Aligned_cols=35  Identities=34%  Similarity=0.508  Sum_probs=28.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhC--CeEEeccc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIG--CTLISMEN   95 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg--~~vI~~D~   95 (818)
                      .+.-|.+.||+|+|||++|+.++..+|  +.++..+.
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~   98 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVG   98 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEG
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeH
Confidence            345688999999999999999999998  66655443

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=94.13  E-value=0.021  Score=59.40  Aligned_cols=24  Identities=29%  Similarity=0.627  Sum_probs=21.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      -+++|.|++|||||||.+.|+..+
T Consensus        27 e~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            479999999999999999997654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.13  E-value=0.025  Score=61.09  Aligned_cols=40  Identities=23%  Similarity=0.272  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHH-HhcCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           46 YLLVKSIQELR-EKKGGIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        46 ~~l~~~i~~~~-~~~~~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ...++.+.... +....+. +.|.|++|+||||+++.|+..+
T Consensus        20 ~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           20 EELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             HHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence            34445554443 3333344 8999999999999999999854

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=94.13  E-value=0.02  Score=60.00  Aligned_cols=25  Identities=32%  Similarity=0.477  Sum_probs=22.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .-++||.|++|||||||.+.|+..+
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3479999999999999999998754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=94.11  E-value=0.021  Score=60.43  Aligned_cols=25  Identities=28%  Similarity=0.185  Sum_probs=21.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .-++||.|++|||||||.+.|+..+
T Consensus        47 Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           47 GDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3479999999999999999997654

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=94.10  E-value=0.028  Score=56.29  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=21.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .-+++|.|++|||||||++.++..+
T Consensus        23 G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           23 GFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3579999999999999999998644

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=94.08  E-value=0.041  Score=59.09  Aligned_cols=32  Identities=28%  Similarity=0.390  Sum_probs=27.2

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL  548 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~  548 (818)
                      +.-|.+.||+|+|||++|+.+++.++..++..
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v   82 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV   82 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence            45688899999999999999999998765543

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=94.08  E-value=0.024  Score=61.83  Aligned_cols=33  Identities=30%  Similarity=0.446  Sum_probs=27.3

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE  549 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D  549 (818)
                      +.-|.+.||+|+|||++|+.|++.++..++..+
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~   83 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMAD   83 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence            445778999999999999999999987665543

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=94.05  E-value=0.043  Score=62.81  Aligned_cols=31  Identities=35%  Similarity=0.475  Sum_probs=26.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISME   94 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D   94 (818)
                      =|.|.||+|+||||||+.++..++..++..+
T Consensus        66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~   96 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGEARVPFITAS   96 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            3899999999999999999998886655443

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=94.04  E-value=0.043  Score=58.30  Aligned_cols=30  Identities=37%  Similarity=0.494  Sum_probs=24.9

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEV  545 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~v  545 (818)
                      .+..|.|.|++|+||||+|+.++..++..+
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~   66 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNL   66 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHHHHTCCE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            344567799999999999999999887554

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.03  E-value=0.03  Score=64.44  Aligned_cols=32  Identities=31%  Similarity=0.451  Sum_probs=27.4

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL  548 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~  548 (818)
                      +..+.|.||+|+||||+|+.+++.+++.++.+
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~i  108 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ  108 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            45778899999999999999999998776544

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=94.02  E-value=0.022  Score=59.30  Aligned_cols=24  Identities=25%  Similarity=0.443  Sum_probs=21.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      -+++|.|++|||||||.+.|+..+
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            479999999999999999998754

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=94.01  E-value=0.021  Score=62.52  Aligned_cols=24  Identities=42%  Similarity=0.461  Sum_probs=21.5

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -+++|.||+|||||||.+.|+..+
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCchHHHHHHHHhcCC
Confidence            378999999999999999998755

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=94.00  E-value=0.024  Score=62.26  Aligned_cols=24  Identities=33%  Similarity=0.506  Sum_probs=21.4

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+|||||||.+.|+..+
T Consensus        55 ei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           55 QIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEEcCCCchHHHHHHHHhcCC
Confidence            479999999999999999998755

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=93.99  E-value=0.025  Score=61.90  Aligned_cols=26  Identities=35%  Similarity=0.460  Sum_probs=23.2

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCC
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGC  543 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~  543 (818)
                      -.++|.|++|||||||++.|+..+..
T Consensus       171 ~k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          171 KTVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46899999999999999999998764

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=93.97  E-value=0.028  Score=55.09  Aligned_cols=34  Identities=24%  Similarity=0.221  Sum_probs=27.6

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK  553 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~  553 (818)
                      -|.|+|+||+||||+|..|.+ -|..+++-|....
T Consensus        18 gvli~G~SGaGKStlal~L~~-rG~~lvaDD~v~i   51 (181)
T 3tqf_A           18 GVLITGEANIGKSELSLALID-RGHQLVCDDVIDL   51 (181)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH-TTCEEEESSEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHH-cCCeEecCCEEEE
Confidence            477899999999999999988 4777776665544

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=93.94  E-value=0.054  Score=59.07  Aligned_cols=35  Identities=23%  Similarity=0.579  Sum_probs=28.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh-----CCeEEeccc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMEN   95 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L-----g~~vI~~D~   95 (818)
                      ...+|+|+|++|||||||.+.|...+     .+.|+..|.
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp  112 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP  112 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence            36899999999999999999998754     245666554

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=93.92  E-value=0.06  Score=56.86  Aligned_cols=27  Identities=30%  Similarity=0.530  Sum_probs=23.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ....-|.|.|++|+|||++|+.+++.+
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            344578999999999999999999887

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=93.91  E-value=0.045  Score=51.50  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=20.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHh
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      -|.|.|++|+|||++|+.++...
T Consensus        26 ~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           26 AVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CEEEECCCCCCHHHHHHHHHHhC
Confidence            47899999999999999998864

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.90  E-value=0.031  Score=62.78  Aligned_cols=36  Identities=31%  Similarity=0.343  Sum_probs=30.6

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE  549 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D  549 (818)
                      ...|.=|.+-||+|+|||++|+++|..+++.+++++
T Consensus       212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~  247 (434)
T 4b4t_M          212 IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLA  247 (434)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            345777889999999999999999999998766544

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=93.90  E-value=0.048  Score=59.23  Aligned_cols=29  Identities=28%  Similarity=0.568  Sum_probs=25.4

Q ss_pred             cCCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      ...+..+|||.|++|||||||.+.|...+
T Consensus        51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           51 QTGRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            45667899999999999999999998765

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=93.90  E-value=0.053  Score=59.20  Aligned_cols=32  Identities=31%  Similarity=0.435  Sum_probs=27.1

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS  547 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis  547 (818)
                      .+.-|.|.||+|+||||+|+.++..++..++.
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~  147 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFS  147 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence            45678889999999999999999998866543

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=93.90  E-value=0.023  Score=59.62  Aligned_cols=23  Identities=43%  Similarity=0.663  Sum_probs=20.7

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHh
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      +++|.||+|||||||.+.|+..+
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            79999999999999999997654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=93.89  E-value=0.055  Score=58.73  Aligned_cols=30  Identities=33%  Similarity=0.632  Sum_probs=25.8

Q ss_pred             HhcCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           57 EKKGGIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        57 ~~~~~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      -...+..+|+|.|++|||||||.+.|+..+
T Consensus        50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           50 PQTGRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             GGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            344667899999999999999999998765

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.89  E-value=0.031  Score=60.30  Aligned_cols=26  Identities=27%  Similarity=0.525  Sum_probs=22.2

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      ..|. +.|.||+|+||||+++.++..+
T Consensus        35 ~~~~-~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           35 DLPH-LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             CCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence            3455 8899999999999999999954

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=93.88  E-value=0.019  Score=61.60  Aligned_cols=24  Identities=25%  Similarity=0.520  Sum_probs=21.2

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+|||||||.+.|...+
T Consensus        81 e~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           81 QTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CEEEEECCCCchHHHHHHHHHcCC
Confidence            479999999999999999987654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.87  E-value=0.057  Score=58.26  Aligned_cols=41  Identities=24%  Similarity=0.264  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           46 YLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        46 ~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      ..+++.+....+...-+. +.+.||+|+||||+++.++..+.
T Consensus        31 ~~~~~~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           31 NEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             HHHHHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHc
Confidence            445555555544443333 89999999999999999999763

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=93.85  E-value=0.028  Score=56.00  Aligned_cols=24  Identities=38%  Similarity=0.447  Sum_probs=21.6

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHH
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      .--+++|.|++|||||||+..++.
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            445899999999999999999987

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.84  E-value=0.032  Score=62.69  Aligned_cols=35  Identities=34%  Similarity=0.436  Sum_probs=29.9

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL  548 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~  548 (818)
                      ...|.=|.+.||+|+|||++|+++|..+++.++++
T Consensus       212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v  246 (437)
T 4b4t_L          212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS  246 (437)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            34677788999999999999999999999876554

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=93.84  E-value=0.033  Score=56.69  Aligned_cols=28  Identities=18%  Similarity=0.160  Sum_probs=25.1

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGC  543 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~  543 (818)
                      +..+|.+.|++||||||+++.|++.++.
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            3567889999999999999999999975

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=93.83  E-value=0.028  Score=59.89  Aligned_cols=36  Identities=25%  Similarity=0.410  Sum_probs=28.5

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh----C--Ccccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV----G--CEVVSLESY  551 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l----g--~~vis~Ddf  551 (818)
                      ++.+|++.|++||||||++..|+..+    |  +.++..|-|
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~  145 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY  145 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence            46799999999999999999999765    3  345666654

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=93.82  E-value=0.06  Score=58.28  Aligned_cols=41  Identities=24%  Similarity=0.274  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460           48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGC   88 (818)
Q Consensus        48 l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~   88 (818)
                      .++.+.........+..+.|.|++|+||||+++.+++.+++
T Consensus        24 ~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             HHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            33344333333444457889999999999999999998864

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=93.81  E-value=0.074  Score=59.87  Aligned_cols=52  Identities=21%  Similarity=0.253  Sum_probs=34.0

Q ss_pred             CCcccccchh-----hHHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           35 LPVHASFDHG-----YYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        35 ~~~~~s~~~~-----~~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ++...+|++-     .......+...........-+.|.|++|+||||+++.++..+
T Consensus        98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A           98 LNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             CCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4455677761     122233333333333325568999999999999999999877

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=93.80  E-value=0.06  Score=60.84  Aligned_cols=34  Identities=32%  Similarity=0.482  Sum_probs=27.6

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhC--Ccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLE  549 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg--~~vis~D  549 (818)
                      .+.-|.+.||+|+|||++|+.++..++  +.++.++
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~   97 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMV   97 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEE
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEe
Confidence            445678899999999999999999998  5555443

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=93.79  E-value=0.027  Score=62.13  Aligned_cols=24  Identities=38%  Similarity=0.570  Sum_probs=21.5

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -+++|.||+|||||||.+.|+-.+
T Consensus        30 e~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEEcCCCchHHHHHHHHHcCC
Confidence            478999999999999999998755

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=93.76  E-value=0.032  Score=61.50  Aligned_cols=26  Identities=27%  Similarity=0.492  Sum_probs=23.0

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      ..-+|+|+||+||||||+.+.|...+
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            45689999999999999999998765

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=93.76  E-value=0.027  Score=59.06  Aligned_cols=25  Identities=40%  Similarity=0.555  Sum_probs=21.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .-+++|.|++|||||||.+.|+..+
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            3479999999999999999997654

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=93.75  E-value=0.027  Score=61.72  Aligned_cols=25  Identities=40%  Similarity=0.312  Sum_probs=22.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      --+++|.||+|||||||.+.|+..+
T Consensus        30 Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           30 GEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCchHHHHHHHHhcCC
Confidence            3478999999999999999998755

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=93.74  E-value=0.031  Score=61.39  Aligned_cols=26  Identities=27%  Similarity=0.346  Sum_probs=22.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .--++||.|++|||||||.+.|+..+
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            33579999999999999999998755

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=93.73  E-value=0.029  Score=61.41  Aligned_cols=24  Identities=46%  Similarity=0.754  Sum_probs=21.4

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -+++|.||+|||||||.+.|+..+
T Consensus        42 e~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           42 EMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            378999999999999999998755

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=93.72  E-value=0.035  Score=53.89  Aligned_cols=24  Identities=33%  Similarity=0.625  Sum_probs=22.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      +.+|+|++||||||+.++|.-.++
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            789999999999999999988775

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=93.71  E-value=0.033  Score=54.08  Aligned_cols=24  Identities=29%  Similarity=0.612  Sum_probs=22.1

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhC
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      +.+|.|++||||||+.++|.-.++
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            788999999999999999988775

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=93.70  E-value=0.039  Score=60.74  Aligned_cols=27  Identities=26%  Similarity=0.460  Sum_probs=23.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ...-+|+|+|++||||||+.+.|+..+
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            345689999999999999999998865

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=93.70  E-value=0.029  Score=61.46  Aligned_cols=20  Identities=45%  Similarity=0.660  Sum_probs=0.0

Q ss_pred             EEeeeCCCCccHHHHHHHHH
Q 003460          519 IVGIGGPSGSGKTSLAHKMA  538 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~  538 (818)
                      +++|.||+|||||||.+.|+
T Consensus        31 ~~~llGpnGsGKSTLLr~ia   50 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLA   50 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCchHHHHHHHHH

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=93.66  E-value=0.088  Score=52.71  Aligned_cols=27  Identities=44%  Similarity=0.598  Sum_probs=23.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ...++|+|.|.+|||||||+..|+..+
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            457889999999999999999998765

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=93.65  E-value=0.025  Score=63.57  Aligned_cols=37  Identities=27%  Similarity=0.401  Sum_probs=30.7

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh-----CCccccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYF  552 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l-----g~~vis~Ddfy  552 (818)
                      .|.+|+|+|++||||||++..|+..+     .+.++++|-|.
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r  139 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR  139 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence            46789999999999999999999876     35677777654

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.64  E-value=0.032  Score=61.95  Aligned_cols=36  Identities=33%  Similarity=0.521  Sum_probs=30.1

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE  549 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D  549 (818)
                      ...|.=|.+.||+|+|||++|+++|..+++.+++++
T Consensus       179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~  214 (405)
T 4b4t_J          179 IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS  214 (405)
T ss_dssp             CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE
Confidence            345667888999999999999999999998776544

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=93.64  E-value=0.021  Score=61.25  Aligned_cols=26  Identities=31%  Similarity=0.442  Sum_probs=22.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ..-++||.|++|||||||.+.|+..+
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCC
Confidence            34579999999999999999997655

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=93.63  E-value=0.044  Score=57.89  Aligned_cols=24  Identities=38%  Similarity=0.476  Sum_probs=22.3

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      ..+.+.||+|+||||+|+.|+..+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            478999999999999999999987

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=93.62  E-value=0.031  Score=61.39  Aligned_cols=20  Identities=45%  Similarity=0.752  Sum_probs=0.0

Q ss_pred             EEeeeCCCCccHHHHHHHHH
Q 003460          519 IVGIGGPSGSGKTSLAHKMA  538 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~  538 (818)
                      +++|.||+|||||||.+.|+
T Consensus        31 ~~~llGpnGsGKSTLLr~ia   50 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIA   50 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHh

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=93.62  E-value=0.037  Score=55.16  Aligned_cols=35  Identities=31%  Similarity=0.376  Sum_probs=26.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhC--CeEEeccc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIG--CTLISMEN   95 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg--~~vI~~D~   95 (818)
                      ..-+++|.|++|||||||+..++..-|  +.+++.+.
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~   55 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG   55 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence            345899999999999999999987334  33445443

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=93.60  E-value=0.033  Score=61.46  Aligned_cols=25  Identities=36%  Similarity=0.422  Sum_probs=22.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      --+++|.||+|||||||.+.|+..+
T Consensus        29 Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           29 GEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEEcCCCchHHHHHHHHHcCC
Confidence            3579999999999999999998755

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=93.59  E-value=0.09  Score=57.13  Aligned_cols=27  Identities=22%  Similarity=0.178  Sum_probs=23.9

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ..+..|.|.|++|+||||+++.+++.+
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999999877

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=93.56  E-value=0.083  Score=55.88  Aligned_cols=41  Identities=27%  Similarity=0.267  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           46 YLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        46 ~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      ...++.+.........+. +.|.|++|+||||+|+.+++.++
T Consensus        31 ~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           31 EHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             HHHHHHHHHHHHHTCCCE-EEEESCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCe-EEEECcCCCCHHHHHHHHHHHhc
Confidence            334444444444443334 89999999999999999998763

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=93.56  E-value=0.026  Score=63.45  Aligned_cols=39  Identities=38%  Similarity=0.449  Sum_probs=32.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh-----CCeEEeccceecc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRVG   99 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L-----g~~vI~~D~~~~~   99 (818)
                      .+.+|+|+|++||||||++..|+..+     .+.++++|.+...
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~  141 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPA  141 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCch
Confidence            35789999999999999999999876     2677898887543

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=93.55  E-value=0.032  Score=61.47  Aligned_cols=20  Identities=40%  Similarity=0.607  Sum_probs=0.0

Q ss_pred             EEeeeCCCCccHHHHHHHHH
Q 003460          519 IVGIGGPSGSGKTSLAHKMA  538 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~  538 (818)
                      +++|.||+|||||||.+.|+
T Consensus        39 ~~~llGpnGsGKSTLLr~ia   58 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIA   58 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHH

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=93.52  E-value=0.035  Score=60.78  Aligned_cols=24  Identities=46%  Similarity=0.688  Sum_probs=21.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      -+++|.||+|||||||.+.|+..+
T Consensus        42 e~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           42 EMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            479999999999999999998755

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=93.52  E-value=0.034  Score=56.31  Aligned_cols=25  Identities=28%  Similarity=0.331  Sum_probs=21.9

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHH
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANI  540 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~  540 (818)
                      +--+++|.|++|||||||+..|+..
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3458999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	818
d1a7ja_	288	c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sph	7e-24
d1a7ja_	288	c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sph	2e-17
d1uj2a_	213	c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Ho	5e-18
d1uj2a_	213	c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Ho	1e-11
d1sq5a_	308	c.37.1.6 (A:) Pantothenate kinase PanK {Escherichi	3e-15
d1sq5a_	308	c.37.1.6 (A:) Pantothenate kinase PanK {Escherichi	5e-11
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	3e-11
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	6e-06
d1ckea_	225	c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId:	3e-06
d1odfa_	286	c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker'	3e-05
d2qm8a1	323	c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo	3e-04
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	3e-04
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	9e-04
d2p67a1	327	c.37.1.10 (A:1-327) LAO/AO transport system kinase	0.001
d2p67a1	327	c.37.1.10 (A:1-327) LAO/AO transport system kinase	0.004
d1q3ta_	223	c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae	0.002
d1sxjd2	237	c.37.1.20 (D:26-262) Replication factor C2 {Baker'	0.003
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	0.003
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.003
d1lw7a2	192	c.37.1.1 (A:220-411) Transcriptional regulator Nad	0.003
d1fnna2	276	c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob	0.004

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 288

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score =  100 bits (250), Expect = 7e-24
 Identities = 30/249 (12%), Positives = 83/249 (33%), Gaps = 48/249 (19%)

Query: 517 PVIVGIGGPSGSGKTSLAHKMANIVGCE-----VVSLESYFKS--------------EQV 557
             I+ + G SG+G +++ H    I   E      +  +++ +                  
Sbjct: 4   HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGD 63

Query: 558 KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFK--------ELEVSED 609
             F +  + + +L  L +   +     + +   +  +    +             +   D
Sbjct: 64  ATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSD 123

Query: 610 CGVIIFEGVYALHP----EIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM 665
             ++ +EG++         I    DL I VV  ++   I ++ RD++  G   +   +  
Sbjct: 124 SHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWIQKIHRDRATRG--YTTEAVTD 181

Query: 666 TVF---PMFQQHIEPHLVHAHLKIR--------NDFDP--VLSPESSLFVL--KSNKQVA 710
            +      +   I P      +  +        N F    + + + S+ V+  ++ + + 
Sbjct: 182 VILRRMHAYVHCIVPQFSQTDINFQRVPVVDTSNPFIARWIPTADESVVVIRFRNPRGID 241

Query: 711 YQDILKILD 719
           +  +  ++ 
Sbjct: 242 FPYLTSMIH 250

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 288

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 81.1 bits (200), Expect = 2e-17
 Identities = 23/199 (11%), Positives = 59/199 (29%), Gaps = 40/199 (20%)

Query: 65  VGIGGPSGSGKTSLAEKLASVIG-----CTLISMENY------------------RVGVD 101
           + + G SG+G +++      +          I  + +                       
Sbjct: 7   ISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATF 66

Query: 102 EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKG---------ASSGV 152
                ++ +   L +  ++  E        + +       + V  G         + S +
Sbjct: 67  SHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHL 126

Query: 153 VIVDGTYAL----DARLRSLLDIRVAVVGGVHFSLISKVQYDIGD-SCSLDSLIDSIF-- 205
           +  +G +      +  +  L D+++ VV  ++   I K+  D      + +++ D I   
Sbjct: 127 LFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILRR 186

Query: 206 -PLFRKHIEPDLHHAQIRI 223
              +   I P      I  
Sbjct: 187 MHAYVHCIVPQFSQTDINF 205

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.2 bits (199), Expect = 5e-18
 Identities = 45/196 (22%), Positives = 87/196 (44%), Gaps = 23/196 (11%)

Query: 517 PVIVGIGGPSGSGKTSLAHKMANIVG----------CEVVSLESYFKS--------EQVK 558
           P ++G+ G + SGK+S+  K+  ++G            ++S +S+++             
Sbjct: 2   PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKG 61

Query: 559 DFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGV 618
            F +D   + D  L+ K + +I  G+  ++P++D  + +R   +E        V++FEG+
Sbjct: 62  QFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRK--EETVTVYPADVVLFEGI 119

Query: 619 YAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHI 675
            A    E+R    + + V     + L  RV RD S  G  + Q  +  +  V P F++  
Sbjct: 120 LAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFC 179

Query: 676 EPHLVHAHLKIRNDFD 691
            P   +A + I    D
Sbjct: 180 LPTKKYADVIIPRGAD 195

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 1e-11
 Identities = 37/188 (19%), Positives = 75/188 (39%), Gaps = 27/188 (14%)

Query: 65  VGIGGPSGSGKTSLAEKLASVIG----------CTLISMENY------------RVGVDE 102
           +G+ G + SGK+S+  K+  ++G            ++S +++              G   
Sbjct: 5   IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFN 64

Query: 103 GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD 162
            +  D+ D + +++ L+++TEGK   IP++D+   +R    V    +  V+         
Sbjct: 65  FDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYS 124

Query: 163 ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCS-----LDSLIDSIFPLFRKHIEPDLH 217
             +R L  +++ V       L  +V  DI +        L   I  + P F +   P   
Sbjct: 125 QEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKK 184

Query: 218 HAQIRINN 225
           +A + I  
Sbjct: 185 YADVIIPR 192

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Length = 308

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

 Score = 75.1 bits (184), Expect = 3e-15
 Identities = 35/248 (14%), Positives = 71/248 (28%), Gaps = 55/248 (22%)

Query: 498 RGLLLSVQAIQAL---------LENKGLPVIVGIGGPSGSGKTSLAHKMANIVG------ 542
           R L   + +                + +P I+ I G    GK++ A  +  ++       
Sbjct: 52  RLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111

Query: 543 -CEVVSLESYFKSEQVKD-----FKYDDFSSLDLSLLSKNISDIRNGRRT-KVPIFDLET 595
             E+++ + +    QV        K     S D+  L K +SD+++G      P++    
Sbjct: 112 RVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLI 171

Query: 596 GARSGFKELEVSEDCGVIIFEGVYAL-----------HPEIRKSLDLWIAVVGGVHSHLI 644
                    +      ++I EG+  L           H  +   +D  I V         
Sbjct: 172 YDVIP-DGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQT 230

Query: 645 SRVQRDKSRMGC-------FMSQNDIMM--------------TVFPMFQQHIEPHLVHAH 683
             + R              +      +                 +   +Q+I P    A 
Sbjct: 231 WYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERAS 290

Query: 684 LKIRNDFD 691
           L +    +
Sbjct: 291 LILTKSAN 298

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Length = 308

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

 Score = 62.4 bits (151), Expect = 5e-11
 Identities = 29/215 (13%), Positives = 67/215 (31%), Gaps = 29/215 (13%)

Query: 56  REKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-------CTLISMENY---------RVG 99
              +     + I G    GK++ A  L +++          LI+ + +         R  
Sbjct: 74  TNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGL 133

Query: 100 VDEGNDLDSIDFDALVQNLQDLTEGKDT-LIPMFDYQQKNRIGSKVIKGASSGVVIVDGT 158
           + +    +S D   LV+ + DL  G      P++ +   + I           ++I++G 
Sbjct: 134 MKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGL 193

Query: 159 YAL-----------DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPL 207
             L              +   +D  + V           +   +       +  DS F  
Sbjct: 194 NVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHN 253

Query: 208 FRKHIEPDLHHAQIRINNRFV-SSFREAIYKLKCR 241
           + K  + +     + +       + ++ I   + R
Sbjct: 254 YAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRER 288

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 61.3 bits (147), Expect = 3e-11
 Identities = 33/190 (17%), Positives = 67/190 (35%), Gaps = 22/190 (11%)

Query: 505 QAIQALLE-----NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS------------ 547
             I  L +          +++GI G S SGKT+LA++++  +  + +S            
Sbjct: 5   DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64

Query: 548 LESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVS 607
               + +   + F+Y         L  +    ++   +  +P +D ET   S        
Sbjct: 65  RAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRT--VYL 122

Query: 608 EDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTV 667
            D  +I+ EGV+    E R   D  + +             + K  +  F+++       
Sbjct: 123 SDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQVKQNIQKFINR---YWKA 179

Query: 668 FPMFQQHIEP 677
              + +  EP
Sbjct: 180 EDYYLETEEP 189

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 45.5 bits (106), Expect = 6e-06
 Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 20/193 (10%)

Query: 48  LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYR---------- 97
           L K+I  +  K  G + +GI G S SGKT+LA +L+  +    IS+  +           
Sbjct: 10  LCKTILAI--KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAK 67

Query: 98  ------VGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSG 151
                     E   L         Q  + L       +P +D++        V   + S 
Sbjct: 68  RYHTGNEEWFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYL-SDSD 126

Query: 152 VVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKH 211
           +++++G +      R   D  V +          +      +     +        + + 
Sbjct: 127 MIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQVKQNIQKFINRYWKAEDYYLET 186

Query: 212 IEPDLHHAQIRIN 224
            EP +  A +  +
Sbjct: 187 EEP-IKRADVVFD 198

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 29/219 (13%), Positives = 62/219 (28%), Gaps = 14/219 (6%)

Query: 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS------LESYFKSEQVKDFKYDDFSSL 568
            +  ++ I GPSG+GK +L   MA  +   ++       + +        D   +D    
Sbjct: 1   AIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVP 60

Query: 569 DLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKS 628
             S L              +   D+    R+       S+                  + 
Sbjct: 61  LASHLDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRE 120

Query: 629 LDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRN 688
           L   IA    + + +                +    M    +    +    + A +K R+
Sbjct: 121 LPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERLLAEIKERD 180

Query: 689 DFD------PVLSPESSLFVLKSNKQV--AYQDILKILD 719
           D D      P++    +L +  +   +    +  L+   
Sbjct: 181 DRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYAR 219

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 286

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.4 bits (104), Expect = 3e-05
 Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 8/91 (8%)

Query: 501 LLSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDF 560
            L     +        P+ +   GP GSGK+  + ++ N +      +E Y   + +   
Sbjct: 11  FLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHL------MEKYGGEKSIGYA 64

Query: 561 KYDDF--SSLDLSLLSKNISDIRNGRRTKVP 589
             DDF  +  D   L++   + +  +   +P
Sbjct: 65  SIDDFYLTHEDQLKLNEQFKNNKLLQGRGLP 95

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 52 IQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGC 88
          I  +  + G  + VGI G  G GK++  + L S++  
Sbjct: 41 IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA 77

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 16/162 (9%), Positives = 42/162 (25%), Gaps = 16/162 (9%)

Query: 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNIS 578
           +  I GP+G GK++   ++A  +               V  +                  
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGY----------------RP 47

Query: 579 DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGG 638
              +     +   ++     +            +   +   AL   ++  +D        
Sbjct: 48  PWESDELLALTWKNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFII 107

Query: 639 VHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLV 680
           + ++    ++RD  R          +  V     + I+    
Sbjct: 108 LWTNREELLRRDALRKKDEQMGERCLELVEEFESKGIDERYF 149

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 39.2 bits (90), Expect = 9e-04
 Identities = 18/164 (10%), Positives = 41/164 (25%), Gaps = 8/164 (4%)

Query: 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLL 573
           K  P +V + G  GSGK +    +    G   +S     + EQ                +
Sbjct: 3   KSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGS--------KDGEM 54

Query: 574 SKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWI 633
              +        + V +  L+    +   +  + +                       ++
Sbjct: 55  IATMIKNGEIVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFV 114

Query: 634 AVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEP 677
                    +  R+ +     G      + +   F  F    + 
Sbjct: 115 LFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKL 158

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (92), Expect = 0.001
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 52 IQELREKKGGIVTVGIGGPSGSGKTSLAEKLAS 84
          +  +    G  + +G+ G  G+GK++  E    
Sbjct: 44 LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 76

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (87), Expect = 0.004
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 497 DRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMA 538
            R   LS Q + A++   G  + +G+ G  G+GK++      
Sbjct: 34  PRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFG 75

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Length = 223

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 21/218 (9%), Positives = 61/218 (27%), Gaps = 15/218 (6%)

Query: 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVS------LESYFKSEQVKDFKYDDFSSLDL 570
            + + I GP+ SGK+++A  +A   G   +         +Y   +     +  +     L
Sbjct: 3   TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALL 62

Query: 571 SLLSKNISDIRN-GRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSL 629
                +        +   V   D+    R       VS    +           +     
Sbjct: 63  DQHPISFGRSETGDQLVFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQ 122

Query: 630 DLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRND 689
              +     + + ++ + +     +     + +             +   +   +  R+ 
Sbjct: 123 GGIVMDGRDIGTVVLPQAELKIFLVASVDERAERRYKENIAKGIETDLETLKKEIAARDY 182

Query: 690 FD------PVLSPESSLFVLKSNKQV--AYQDILKILD 719
            D      P+   E ++++  +   +    + I    +
Sbjct: 183 KDSHRETSPLKQAEDAVYLDTTGLNIQEVVEKIKAEAE 220

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 23/188 (12%), Positives = 58/188 (30%), Gaps = 18/188 (9%)

Query: 504 VQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYD 563
           V  ++  L++  LP ++   GP G+GKTS    +   +              + +  + +
Sbjct: 21  VTVLKKTLKSANLPHML-FYGPPGTGKTSTILALTKELYGP--------DLMKSRILELN 71

Query: 564 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP 623
                 +S++ + + +      +K    DLE      +K         +II +   ++  
Sbjct: 72  ASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYK---------IIILDEADSMTA 122

Query: 624 EIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAH 683
           + + +L   +    GV    +      +         +                  +   
Sbjct: 123 DAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQ 182

Query: 684 LKIRNDFD 691
             ++ D  
Sbjct: 183 ENVKCDDG 190

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 65  VGIGGPSGSGKTSLAEKLASVIG--CTLISMENYRVGVDEGNDLDSIDFDA 113
           + + G  GSGK+++AE LA++ G        ++    +  G     +    
Sbjct: 7   LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSH 57

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 5/51 (9%)

Query: 65  VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALV 115
             + G   SGKT+L EK  +         E +RVG  + +           
Sbjct: 4   WQVVGYKHSGKTTLMEKWVA-----AAVREGWRVGTVKHHGHGGEPARPEG 49

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 12/47 (25%), Positives = 17/47 (36%)

Query: 65  VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDF 111
           V I G   SGK+ L  KLA+V   T           ++    +    
Sbjct: 10  VAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQ 56

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 22/217 (10%), Positives = 49/217 (22%), Gaps = 2/217 (0%)

Query: 504 VQAIQALLENKG-LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKY 562
              +   L N G       + G  G+GKT    K+  +   +       + +  +     
Sbjct: 29  DILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFT 87

Query: 563 DDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH 622
                +  SL         +       + +           +              +   
Sbjct: 88  AIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRL 147

Query: 623 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHA 682
            +    L  +   +  V  +       D S  G                   I      A
Sbjct: 148 GQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKA 207

Query: 683 HLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILD 719
            L   +  + +L   + +   ++       D    +D
Sbjct: 208 GLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAID 244

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	818
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	99.97
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	99.95
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	99.94
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	99.94
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	99.91
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	99.89
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	99.88
d1yema_	163	Hypothetical protein PF0863 {Pyrococcus furiosus [	99.86
d2acaa1	174	Putative adenylate cyclase VP1760 {Vibrio parahaem	99.8
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	99.77
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	99.71
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	99.65
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	99.61
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.59
d2jmua1	223	Thiamine-triphosphatase (ThTPase) {Mouse (Mus musc	99.58
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	99.56
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.45
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	99.44
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	99.38
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.87
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.87
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.85
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.84
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.77
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.75
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	98.7
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.7
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	98.69
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	98.67
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.66
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.64
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	98.63
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.62
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.62
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.59
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.58
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.58
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.58
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.57
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.55
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	98.55
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.54
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.53
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	98.53
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.52
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.51
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.48
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	98.43
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.4
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.38
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.38
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.37
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.36
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.34
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.34
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.33
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	98.32
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	98.31
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	98.25
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.25
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.25
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.22
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	98.22
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	98.21
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	98.16
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.13
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.12
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.12
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	98.12
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.11
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	98.07
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	98.06
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.05
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	98.03
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	98.0
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.0
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.99
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.94
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.93
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.93
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	97.88
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.88
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.88
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.86
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.85
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.82
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.82
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.81
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.8
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.76
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.71
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.67
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.59
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.56
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.55
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.49
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.49
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.48
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.47
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.47
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.43
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.37
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.34
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.34
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.23
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.23
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.2
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.19
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	97.18
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	97.18
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.11
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.1
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.09
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.08
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.07
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.07
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	97.04
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.03
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	97.02
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	96.89
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.88
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.86
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.86
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.8
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.8
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.79
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.73
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.64
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.64
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.63
d2fbla1	150	Hypothetical protein NE1496 {Nitrosomonas europaea	96.62
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.61
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.59
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.58
d1okkd2	207	GTPase domain of the signal recognition particle r	96.57
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.57
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.55
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.45
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.42
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	96.42
d1okkd2	207	GTPase domain of the signal recognition particle r	96.41
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.38
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.33
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.33
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.31
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.29
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.26
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.25
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.22
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.22
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.14
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.03
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.99
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.87
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.86
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.84
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.81
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.81
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.75
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.72
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.66
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.64
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.62
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.5
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.46
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.39
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.35
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.33
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.3
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.29
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.29
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.28
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.28
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.27
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.27
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.26
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.24
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.23
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.21
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.21
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	95.17
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.17
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.14
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.1
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	95.08
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.08
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.95
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	94.95
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	94.93
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	94.92
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	94.92
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	94.91
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.88
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	94.87
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	94.86
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.85
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	94.84
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	94.8
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	94.8
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	94.76
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	94.76
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.7
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	94.7
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	94.67
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.61
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	94.6
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.57
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.56
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	94.46
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.46
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	94.44
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.34
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	94.33
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	94.28
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.18
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	94.18
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.12
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	94.08
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	94.01
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	93.99
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	93.96
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	93.96
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.74
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	93.65
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	93.63
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	93.62
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.59
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	93.58
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.43
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	93.28
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.15
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	93.13
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	93.1
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	92.98
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	92.78
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	92.72
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.67
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	92.57
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.52
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	92.47
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	92.47
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	92.41
d1tuea_	205	Replication protein E1 helicase domain {Human papi	92.38
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	92.35
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	92.31
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	92.27
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	92.19
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.17
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	92.12
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	92.05
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	91.9
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	91.89
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	91.84
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	91.79
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	91.64
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	91.62
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	91.48
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	91.43
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	91.29
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	91.16
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	91.12
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	91.04
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	90.82
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	90.81
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	90.79
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	90.74
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	90.66
d1tuea_	205	Replication protein E1 helicase domain {Human papi	90.56
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	90.5
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	90.5
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	90.47
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	90.43
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	90.36
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	90.35
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	90.32
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	90.28
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	90.22
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	90.15
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	90.09
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	90.08
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	89.89
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	89.88
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	89.86
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	89.86
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	89.83
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	89.83
d1nrjb_	209	Signal recognition particle receptor beta-subunit	89.82
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	89.81
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	89.73
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	89.68
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	89.61
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	89.61
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	89.53
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	89.51
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	89.46
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	89.44
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	89.43
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	89.33
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	89.32
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	89.18
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	89.16
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	89.12
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	88.95
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	88.9
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	88.83
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	88.78
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	88.77
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	88.75
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	88.73
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	88.71
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	88.7
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	88.64
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	88.62
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	88.61
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	88.59
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	88.58
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	88.48
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	88.46
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	88.42
d1nrjb_	209	Signal recognition particle receptor beta-subunit	88.42
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	88.34
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	88.34
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	88.27
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	88.19
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	88.16
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	88.08
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	88.05
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	88.05
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	88.02
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	87.92
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	87.92
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	87.82
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	87.76
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	87.75
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	87.71
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	87.71
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	87.68
d2fh5b1	207	Signal recognition particle receptor beta-subunit	87.65
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	87.59
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	87.58
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	87.52
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	87.52
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	87.49
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	87.39
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	87.34
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	87.3
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	87.26
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	87.25
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	87.25
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	87.22
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	87.21
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	87.18
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	87.06
d2fh5b1	207	Signal recognition particle receptor beta-subunit	86.99
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	86.96
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	86.91
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	86.86
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	86.84
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	86.69
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	86.67
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	86.65
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	86.64
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	86.46
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	86.46
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	86.3
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	86.14
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	86.01
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	85.99
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	85.98
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	85.93
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	85.91
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	85.84
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	85.83
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	85.82
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	85.79
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	85.74
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	85.72
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	85.66
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	85.6
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	85.5
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	85.48
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	85.47
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	85.47
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	85.44
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	85.38
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	85.36
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	85.35
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	85.33
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	85.29
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	85.28
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	85.26
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	85.24
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	85.17
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	85.13
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	85.13
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	85.01
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	84.85
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	84.81
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	84.81
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	84.8
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	84.8
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	84.78
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	84.65
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	84.64
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	84.56
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	84.51
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	84.45
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	84.44
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	84.32
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	84.3
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	84.23
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	84.22
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	84.2
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	84.19
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	84.02
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	83.8
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	83.74
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	83.66
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	83.53
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	83.24
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	83.22
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	83.22
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	83.16
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	83.13
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	83.11
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	83.07
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	82.99
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	82.87
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	82.72
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	82.65
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	82.62
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	82.61
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	82.42
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	82.25
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	82.21
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	82.14
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	82.1
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	81.9
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	81.85
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	81.82
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	81.7
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	81.54
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	81.46
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	81.37
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	81.3
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	81.25
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	81.13
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	81.11
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	81.09
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	81.09
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	80.88
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	80.87
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	80.77
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	80.4
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	80.26
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	80.2
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	80.12

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=4.2e-31  Score=282.44  Aligned_cols=239  Identities=16%  Similarity=0.174  Sum_probs=172.7

Q ss_pred             ccccccceecccCCCCCCcc--cccCCCcccceecccCCCCc-chhhhhHHHHHHHHHHH---------HcCCCCEEEee
Q 003460          455 EPVLATWHFISSDPSHAGSS--VIGSSSFRDTVKLVPMPDSY-DFDRGLLLSVQAIQALL---------ENKGLPVIVGI  522 (818)
Q Consensus       455 ~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~i~~l~---------~~~~~p~iIgI  522 (818)
                      ..+.++|+.++.+++.+|++  +-+..+..+.+.+..+.+.| ++.+-+.+.+++.+.+.         ...+.|+||||
T Consensus         6 ~~~~~~w~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~iylpl~~l~~~~~~~~~~~~~~~~~fl~~~~~k~P~iIGI   85 (308)
T d1sq5a_           6 QFDRNQWAALRDSVPMTLSEDEIARLKGINEDLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISI   85 (308)
T ss_dssp             EEEHHHHHHTCC---C-CCHHHHHHHHHHCTTCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEE
T ss_pred             eeCHHHHHhhccCCCCCCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCEEEEE
Confidence            46789999667888888885  22222333333332222222 12222222233333332         13567999999


Q ss_pred             eCCCCccHHHHHHHHHHHhC-------Ccccccccccchhhh-----hcccCCCcccccHHHHHHHHHHHhcCC-ceecc
Q 003460          523 GGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV-----KDFKYDDFSSLDLSLLSKNISDIRNGR-RTKVP  589 (818)
Q Consensus       523 sG~sGSGKTTla~~L~~~lg-------~~vis~Ddfy~~~~~-----~~~~~d~p~t~D~~ll~~~L~~L~~g~-~v~~P  589 (818)
                      +|++||||||+|+.|+..|+       +.+||+||||++.+.     ...+++.|+++|+++|.++|..+++|+ .+..|
T Consensus        86 aG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~~~~~l~~~~~~~~~g~Pes~D~~~L~~~L~~lk~g~~~v~~P  165 (308)
T d1sq5a_          86 AGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAP  165 (308)
T ss_dssp             EECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTTTCSCEEEC
T ss_pred             eCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeECCchHHHHhcCCccCCchHhhhHHHHHHHHHHHHcCCCcceee
Confidence            99999999999999999874       558999999998432     235688999999999999999999885 59999


Q ss_pred             cccccccccCCCcceeeecCCcEEEEEecccchH-----------hhhhcCCEEEEEEcChhHHHHHHHhcCccccCccc
Q 003460          590 IFDLETGARSGFKELEVSEDCGVIIFEGVYALHP-----------EIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM  658 (818)
Q Consensus       590 ~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~-----------~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~  658 (818)
                      .||+.++++.+. ......+.+|||+||++++++           .+++++|++|||+++.+.++.|++.|+...+|.+.
T Consensus       166 ~yd~~~~d~~~~-~~~~~~~~dIlIvEGi~vL~~~~~~~~~~~~~~l~d~~D~~Ifvda~~~~~~~r~i~R~~~~r~~a~  244 (308)
T d1sq5a_         166 VYSHLIYDVIPD-GDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAF  244 (308)
T ss_dssp             CEETTTTEECTT-CCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTTT
T ss_pred             ccchhhcccCCC-CceEeCCCCEEEEcchhhccCccccccccccchhhhhhheeeeecCCHHHHHHHHHHHHHHHhcccc
Confidence            999999998864 334456679999999999863           27899999999999999999999999999888653


Q ss_pred             ch---------------------hhHHHhhcchhhhhccccCCcccEEEeCCCCCcc
Q 003460          659 SQ---------------------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVL  694 (818)
Q Consensus       659 ~~---------------------~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l  694 (818)
                      ..                     ..|.....|++.+||.|++.+||+||+.+.+...
T Consensus       245 ~d~~~~~~~y~~~~~~ea~~~a~~~w~~i~~~nl~~~I~Ptk~rADlIi~~~~dh~v  301 (308)
T d1sq5a_         245 TDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSANHAV  301 (308)
T ss_dssp             TCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECGGGCE
T ss_pred             cChHHHHHHHhccCHHHHHHHHHHHHHHcchhhHHHhCccchhcceEEEEcCCCCcE
Confidence            21                     0122345789999999999999999987766543

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.95  E-value=6.3e-29  Score=261.86  Aligned_cols=172  Identities=15%  Similarity=0.294  Sum_probs=139.4

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccchh--------------hhhcccCCCcccccHHHHHHH
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSE--------------QVKDFKYDDFSSLDLSLLSKN  576 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~~--------------~~~~~~~d~p~t~D~~ll~~~  576 (818)
                      ++.||||+|+|||||||+|+.|++.|+     +.+|++|+||+..              ....+++++|+++|+++|.++
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfyr~~R~~~~~~~~~~~~~~~~~~~~~~P~A~d~dlL~~~   82 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERV   82 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCCccchhhhhhhhhhhhhhhccCCCCCCcccccHHHHHHH
Confidence            344899999999999999999999873     4589999999731              113467889999999999999


Q ss_pred             HHHHhcCCceecccccccccccCCC-------ccee-eecCCcEEEEEecccch----HhhhhcCCEEEEEEcChhHHHH
Q 003460          577 ISDIRNGRRTKVPIFDLETGARSGF-------KELE-VSEDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHLI  644 (818)
Q Consensus       577 L~~L~~g~~v~~P~yD~~~~~r~~~-------~~~~-~~~~~~vvIvEG~~~~~----~~l~~~~D~~I~v~~~~d~rl~  644 (818)
                      |..|++|+.+..|.||+.++.+...       ..|. ...+.++||+||+|+++    ..+++++|++|||+++.++++.
T Consensus        83 l~~L~~g~~i~~p~Ydh~~~~~~~~~~~~~~~t~~~~~~~~~dvIivEGlh~l~~~~~~~ir~~~DlkIfVd~d~dlrli  162 (288)
T d1a7ja_          83 FREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWI  162 (288)
T ss_dssp             HHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHHH
T ss_pred             HHHHHCCCcccceeeeeecCcccccccCCCCCCcceeecCCCceEEEechhhccccchhhhHhhcCeEEEEECCCCeEEE
Confidence            9999999999999999998876532       2332 34567999999999985    4589999999999999999999


Q ss_pred             HHHhcCccccCcccch--hhHHHhhcchhhhhccccCCcccEEEeC
Q 003460          645 SRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRN  688 (818)
Q Consensus       645 Rri~Rd~~~rg~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n  688 (818)
                      ||+.||..+||++.+.  +++. .+.|+|.+||.|++++||++|+.
T Consensus       163 RRI~RD~~eRG~s~E~V~~~i~-rrmpdy~~yI~Pq~~~aDI~~~r  207 (288)
T d1a7ja_         163 QKIHRDRATRGYTTEAVTDVIL-RRMHAYVHCIVPQFSQTDINFQR  207 (288)
T ss_dssp             HHHHHTSSSCCSCCCCHHHHHH-HHHHHHHHHTGGGGGTCSEEEEE
T ss_pred             eeehhhhhhcCCCHHHHHHHHH-hcchHHHHHHHHhhhceeEEEEe
Confidence            9999999999999986  4554 48999999999999999999864

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-27  Score=242.90  Aligned_cols=173  Identities=25%  Similarity=0.468  Sum_probs=152.1

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhC----------Ccccccccccchh--h------hhcccCCCcccccHHHHHHHH
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVG----------CEVVSLESYFKSE--Q------VKDFKYDDFSSLDLSLLSKNI  577 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg----------~~vis~Ddfy~~~--~------~~~~~~d~p~t~D~~ll~~~L  577 (818)
                      .|+||||+|++||||||+|+.|++.|+          +.++++||||+..  .      ....++++|.++|++++.+.+
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   80 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTL   80 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccccccccchhhhhhhhhcccccCCcHHHHHHHHHhhh
Confidence            499999999999999999999999986          3579999999751  1      234568899999999999999


Q ss_pred             HHHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCc
Q 003460          578 SDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC  656 (818)
Q Consensus       578 ~~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~  656 (818)
                      ..+++|..+..|.||+..+.+..  ......+.+++|+||+++++ +.+++++|++|||+++.++++.|++.||...+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~iiveg~~~l~~~~l~~~~D~~i~v~~~~~~~~~R~~~Rd~~~rg~  158 (213)
T d1uj2a_          81 KEITEGKTVQIPVYDFVSHSRKE--ETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGR  158 (213)
T ss_dssp             HHHHTTCCEEEEEEETTTTEEEE--EEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHSCC
T ss_pred             hhhhcCCcccccccccccccccC--ceEEecccceEEecchhhhccHHHHhhhheeeeecCCHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999988763  23344677999999999975 8899999999999999999999999999999999


Q ss_pred             ccch--hhHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460          657 FMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF  690 (818)
Q Consensus       657 ~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n~~  690 (818)
                      +.+.  .+|...++|+|++||+|++.+||+||+|+.
T Consensus       159 ~~e~~~~~~~~~~~~~~~~~i~p~k~~ADlIi~~~~  194 (213)
T d1uj2a_         159 DLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGA  194 (213)
T ss_dssp             CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGG
T ss_pred             CHHHHHHHHHHHhHHHHHHHhhhhHhcCCEEEeCCC
Confidence            8775  567778999999999999999999999874

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=7.3e-29  Score=261.88  Aligned_cols=216  Identities=16%  Similarity=0.183  Sum_probs=139.5

Q ss_pred             cCCCCEEEeeeCCCCccHHHHHHHHHHHh--------CCcccccccccchhhh----hcc--------cCCCcccccHHH
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV--------GCEVVSLESYFKSEQV----KDF--------KYDDFSSLDLSL  572 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~l--------g~~vis~Ddfy~~~~~----~~~--------~~d~p~t~D~~l  572 (818)
                      ..+.|++|||+|++||||||+|..|...|        .+.+||+||||++.+.    ...        ..+.|+|||+++
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~t~~~r~~L~~~~~~~pl~~~RG~PgThD~~l  102 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKL  102 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCCCCHHHHHHHhhhccccccceecCCCcchhHHH
Confidence            45579999999999999999999887665        2557899999998432    111        246799999999


Q ss_pred             HHHHHHHHhcCC------ceecccccccc----cccCCCcceeeecCCcEEEEEecccchHhh-hhcCCEEEEEEcChhH
Q 003460          573 LSKNISDIRNGR------RTKVPIFDLET----GARSGFKELEVSEDCGVIIFEGVYALHPEI-RKSLDLWIAVVGGVHS  641 (818)
Q Consensus       573 l~~~L~~L~~g~------~v~~P~yD~~~----~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l-~~~~D~~I~v~~~~d~  641 (818)
                      +.++|..|++|.      ++.+|.||++.    +||.+. ...+..+.+||||||||++.+.+ ....+..+......+.
T Consensus       103 l~~~l~~l~~~~~~~~~~~v~iP~fDk~~~~~~~Dr~~~-~~~i~~~~dviI~EGWcvG~~p~~~~~~~~~~~~~~~~~~  181 (286)
T d1odfa_         103 LQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPT-GQKIKLPVDIFILEGWFLGFNPILQGIENNDLLTGDMVDV  181 (286)
T ss_dssp             HHHHHHHHTC------CCEEEECCEETTHHHHTCEECSS-CEEEESSCSEEEEEESSTTCCCCCSCTTTCSSSCTTHHHH
T ss_pred             HHHHHHHHHhhccccccccccCCchHHHhhccccccCcc-cceecCCCCEEEEechhhcccchhhhhhccccchhhhhHH
Confidence            999999998764      69999999997    456642 23345678999999999987322 2222110000000000


Q ss_pred             HHHHHHhcCccccCcccchhhHHHhhcchhhhhccccCCcccE--EE-----eCCCCCccCccchhhhhccccccchhhh
Q 003460          642 HLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHL--KI-----RNDFDPVLSPESSLFVLKSNKQVAYQDI  714 (818)
Q Consensus       642 rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p~~~~ADi--vI-----~n~~~~~l~~e~~l~~~k~~~~~~~~~~  714 (818)
                      ...++...+                       .+.......|+  .+     +++|.||++||+.|+..++.        
T Consensus       182 ~~~~~~~~~-----------------------~~~~~~~l~~~~i~Lka~~f~~V~~WR~~QE~~L~~~~g~--------  230 (286)
T d1odfa_         182 NAKLFFYSD-----------------------LLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGK--------  230 (286)
T ss_dssp             HHHHHHHHH-----------------------HTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSC--------
T ss_pred             HHHHHHHHH-----------------------HHHhhhhhccccccccCCchhHHHHHHHHHHHHHHHhccC--------
Confidence            111111111                       00000111121  12     23577999999999877664        


Q ss_pred             hccCChhhhhccccccceee-ecCCCCCCCCCCCCCCeEEEEEeCceeE
Q 003460          715 LKILDPAKFCSSAQNFIDMY-LRLPGIPTNGQLTESDCIRVRICEGRFA  762 (818)
Q Consensus       715 ~~~m~~~~v~~~v~~y~~~Y-l~~~~~~~~~~~~~~~~~~~~~~~~~~~  762 (818)
                        ||+++||.+||++|+++| .+.+.+..++.+....-+.+.+++.|=.
T Consensus       231 --gMs~eqv~~FV~~y~~~~~~~l~~~~~~~~lp~~adlvl~lD~~r~I  277 (286)
T d1odfa_         231 --GMTDEQVHAFVDRYMPSYKLYLNDFVRSESLGSIATLTLGIDSNRNV  277 (286)
T ss_dssp             --SCCHHHHHHHHHTTHHHHHHHHHHHHHHTCSSSSEEEEEEECTTSCE
T ss_pred             --CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcceEEEEECCCCce
Confidence              999999999999999999 6665332222222234578888876643

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.6e-25  Score=237.33  Aligned_cols=197  Identities=15%  Similarity=0.199  Sum_probs=158.9

Q ss_pred             cccCCcccccch---hhHHHHHHHHHHH----------------HhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----
Q 003460           32 LQSLPVHASFDH---GYYLLVKSIQELR----------------EKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----   87 (818)
Q Consensus        32 ~~~~~~~~s~~~---~~~~l~~~i~~~~----------------~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----   87 (818)
                      ++++++.+|.++   +|.++.+.|..+.                +..+.|++|||+|++||||||+|+.|+..|+     
T Consensus        31 ~~~~~~~~~~~~v~~iylpl~~l~~~~~~~~~~~~~~~~~fl~~~~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~  110 (308)
T d1sq5a_          31 LKGINEDLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH  110 (308)
T ss_dssp             HHHHCTTCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred             HhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCC
Confidence            457788899776   9999998885443                1235689999999999999999999999873     


Q ss_pred             --CeEEeccceecc---------cccCCCCCcccHHHHHHHHHhhhcCC-ccccccchhhhhccccccccccCCccEEEE
Q 003460           88 --CTLISMENYRVG---------VDEGNDLDSIDFDALVQNLQDLTEGK-DTLIPMFDYQQKNRIGSKVIKGASSGVVIV  155 (818)
Q Consensus        88 --~~vI~~D~~~~~---------~~~~~~~~~~d~~~l~~~L~~l~~~~-~i~~p~~d~~~~~~~~~~~~~~~~~~vVIv  155 (818)
                        +.+|++|+||..         ...++.|+++|++.+.+.|..++.|+ .+..|.|++..++++..........+++|+
T Consensus       111 ~~v~~Is~D~F~~~~~~l~~~~~~~~~g~Pes~D~~~L~~~L~~lk~g~~~v~~P~yd~~~~d~~~~~~~~~~~~dIlIv  190 (308)
T d1sq5a_         111 RRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILIL  190 (308)
T ss_dssp             CCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEE
T ss_pred             CceEEEeeeeeECCchHHHHhcCCccCCchHhhhHHHHHHHHHHHHcCCCcceeeccchhhcccCCCCceEeCCCCEEEE
Confidence              567999999863         34567899999999999999999875 589999999999988665555666789999


Q ss_pred             Eecccchh-----------hhhcCCCEEEEEEcCHHHHHHHHHHhccCCC----------------cCHHHHHH------
Q 003460          156 DGTYALDA-----------RLRSLLDIRVAVVGGVHFSLISKVQYDIGDS----------------CSLDSLID------  202 (818)
Q Consensus       156 EG~~l~~~-----------~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~----------------~s~e~~~~------  202 (818)
                      ||++++.+           .+++++|++|||+++.+.+..|++.|+...+                .+.+++.+      
T Consensus       191 EGi~vL~~~~~~~~~~~~~~l~d~~D~~Ifvda~~~~~~~r~i~R~~~~r~~a~~d~~~~~~~y~~~~~~ea~~~a~~~w  270 (308)
T d1sq5a_         191 EGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLW  270 (308)
T ss_dssp             ECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHH
T ss_pred             cchhhccCccccccccccchhhhhhheeeeecCCHHHHHHHHHHHHHHHhcccccChHHHHHHHhccCHHHHHHHHHHHH
Confidence            99999873           2789999999999999999999999985432                12222221      


Q ss_pred             -h-hchhhhhccCCccccCcEEEECCCC
Q 003460          203 -S-IFPLFRKHIEPDLHHAQIRINNRFV  228 (818)
Q Consensus       203 -~-~~p~~~~~Iep~~~~ADiII~N~~~  228 (818)
                       . ..|++++||.|++++||+||+++..
T Consensus       271 ~~i~~~nl~~~I~Ptk~rADlIi~~~~d  298 (308)
T d1sq5a_         271 KEINWLNLKQNILPTRERASLILTKSAN  298 (308)
T ss_dssp             HHTHHHHHHHTTGGGGGGCSEEEEECGG
T ss_pred             HHcchhhHHHhCccchhcceEEEEcCCC
Confidence             1 2789999999999999999987743

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.3e-23  Score=211.05  Aligned_cols=166  Identities=23%  Similarity=0.412  Sum_probs=140.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhC----------CeEEeccceeccc------------ccCCCCCcccHHHHHHHH
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIG----------CTLISMENYRVGV------------DEGNDLDSIDFDALVQNL  118 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg----------~~vI~~D~~~~~~------------~~~~~~~~~d~~~l~~~L  118 (818)
                      .|++|||+|++||||||+|+.|++.||          +.+|++|+||+..            ...+.+++++.+.+.+.+
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   80 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTL   80 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccccccccchhhhhhhhhcccccCCcHHHHHHHHHhhh
Confidence            489999999999999999999999885          4689999998632            123457889999999999


Q ss_pred             HhhhcCCccccccchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC-cC
Q 003460          119 QDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CS  196 (818)
Q Consensus       119 ~~l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s  196 (818)
                      ..+..+..+..|.|++..+.+..... ...+..++|+||.+++. ..+++++|++|||+++.++++.|++.||...+ .+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiveg~~~l~~~~l~~~~D~~i~v~~~~~~~~~R~~~Rd~~~rg~~  159 (213)
T d1uj2a_          81 KEITEGKTVQIPVYDFVSHSRKEETV-TVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRD  159 (213)
T ss_dssp             HHHHTTCCEEEEEEETTTTEEEEEEE-EECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHSCCC
T ss_pred             hhhhcCCcccccccccccccccCceE-EecccceEEecchhhhccHHHHhhhheeeeecCCHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999888765433 33456799999999876 78899999999999999999999999997655 45


Q ss_pred             HHHHHH----hhchhhhhccCCccccCcEEEECCC
Q 003460          197 LDSLID----SIFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       197 ~e~~~~----~~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      .+++.+    .+.|.|++|++|++++||+||+|+.
T Consensus       160 ~e~~~~~~~~~~~~~~~~~i~p~k~~ADlIi~~~~  194 (213)
T d1uj2a_         160 LEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGA  194 (213)
T ss_dssp             HHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGG
T ss_pred             HHHHHHHHHHHhHHHHHHHhhhhHhcCCEEEeCCC
Confidence            665544    4578999999999999999999983

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.88  E-value=3.5e-23  Score=217.74  Aligned_cols=164  Identities=12%  Similarity=0.212  Sum_probs=128.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceecc------------------cccCCCCCcccHHHHHHH
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVG------------------VDEGNDLDSIDFDALVQN  117 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~------------------~~~~~~~~~~d~~~l~~~  117 (818)
                      +..+|||+|+|||||||+|+.|++.++     +.+|++|+||+.                  ....+.|+++|++.+.+.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfyr~~R~~~~~~~~~~~~~~~~~~~~~~P~A~d~dlL~~~   82 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERV   82 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCCccchhhhhhhhhhhhhhhccCCCCCCcccccHHHHHHH
Confidence            345899999999999999999998773     468999999861                  012346899999999999


Q ss_pred             HHhhhcCCccccccchhhhhcccccc---------ccccCCccEEEEEecccch----hhhhcCCCEEEEEEcCHHHHHH
Q 003460          118 LQDLTEGKDTLIPMFDYQQKNRIGSK---------VIKGASSGVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSLI  184 (818)
Q Consensus       118 L~~l~~~~~i~~p~~d~~~~~~~~~~---------~~~~~~~~vVIvEG~~l~~----~~l~~~~D~~I~Vda~~e~~l~  184 (818)
                      |..+..|+.+..|.|++..+.+....         .....+.+++|+||.+++.    ..+++++|++|||+++.++++.
T Consensus        83 l~~L~~g~~i~~p~Ydh~~~~~~~~~~~~~~~t~~~~~~~~~dvIivEGlh~l~~~~~~~ir~~~DlkIfVd~d~dlrli  162 (288)
T d1a7ja_          83 FREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWI  162 (288)
T ss_dssp             HHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHHH
T ss_pred             HHHHHCCCcccceeeeeecCcccccccCCCCCCcceeecCCCceEEEechhhccccchhhhHhhcCeEEEEECCCCeEEE
Confidence            99999999999999999888765321         1123456799999999985    4689999999999999999999


Q ss_pred             HHHHhccCCC-cCHHHHHH---hhchhhhhccCCccccCcEEEE
Q 003460          185 SKVQYDIGDS-CSLDSLID---SIFPLFRKHIEPDLHHAQIRIN  224 (818)
Q Consensus       185 Rri~Rd~~~~-~s~e~~~~---~~~p~~~~~Iep~~~~ADiII~  224 (818)
                      ||+.||..+| .+.+.+.+   +.+|.|.+||.|++++||+++.
T Consensus       163 RRI~RD~~eRG~s~E~V~~~i~rrmpdy~~yI~Pq~~~aDI~~~  206 (288)
T d1a7ja_         163 QKIHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQFSQTDINFQ  206 (288)
T ss_dssp             HHHHHTSSSCCSCCCCHHHHHHHHHHHHHHHTGGGGGTCSEEEE
T ss_pred             eeehhhhhhcCCCHHHHHHHHHhcchHHHHHHHHhhhceeEEEE
Confidence            9999999887 45444443   4599999999999999999984

>d1yema_ d.63.1.2 (A:) Hypothetical protein PF0863 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Hypothetical protein PF0863
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.86  E-value=5.2e-22  Score=193.46  Aligned_cols=130  Identities=17%  Similarity=0.256  Sum_probs=113.5

Q ss_pred             ccccccccccccceeeccCCCCCcchhhhccCCeeeEeee--CCEEEEEEcceeecCCCcccCceeEEEEec----cHHH
Q 003460          249 SISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQS--GIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLG  322 (818)
Q Consensus       249 ~~~~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~--~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~  322 (818)
                      .|+.+.+...|.|+||++|++++           +|+|..  +.++.+|||||. +++.   +.|.|+|+.|    .|..
T Consensus        21 ~ga~~~~~~~~~d~Yfd~p~~~l-----------lrvR~~~~~~~~~lt~K~~~-~~~~---~~~~E~e~~v~~~~~~~~   85 (163)
T d1yema_          21 FNPEFVRYEEQEDVYFEVPRPKL-----------LRIRGVHNLKKYYLTFKEIL-DENN---EEFYEVEFEIGDFEKAVE   85 (163)
T ss_dssp             TCCEEEEEEEEEEEEECCCTTEE-----------EEEEEETTTTEEEEEEEEEC-SSSS---CEEEEEEEEESCHHHHHH
T ss_pred             cCCcccceEEEEEeEEccCChHH-----------hhhhhhcCCceEEEEEeCcc-CCCC---ceEEEEEecccchHHHHH
Confidence            45677788899999999987542           488865  558999999774 3344   8999999999    8999


Q ss_pred             HHHhcCCceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEecCH------HHHHHHHHHcCCCCCc-cchhHHHHH
Q 003460          323 GLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNR------KTVGAEALRMGINGPW-ITKSYLEMV  394 (818)
Q Consensus       323 ~L~~LGf~~~~~~~K~R~~~~~~~~~i~lD~v~~lg~~fvEiE~~~~------~~i~~~~~~Lgl~~~~-~~~sYlel~  394 (818)
                      +|.+|||.+.++++|.|++|.+++++|+||+++|+|. |+|||.+..      +.+.++|++||++... +++||+|||
T Consensus        86 ~l~~lg~~~~~~~~K~R~~y~~~~~~i~lD~v~~lg~-f~EiE~~~~~~~~~~~~i~~l~~~Lgl~~~~~~~~sY~ell  163 (163)
T d1yema_          86 VFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIGD-FVDIEVISDSPEEAKEKIWEVAKMLGLKEEDVEPRLYLELI  163 (163)
T ss_dssp             HHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECSCHHHHHHHHHHHHHHTTCCGGGBCCSCTTTTC
T ss_pred             HHhhcCceEEEEEEEEEEEEEECCEEEEEEeeCCCCc-EEEEEEEecChHHHHHHHHHHHHHcCCCcccceechhHhhC
Confidence            9999999999999999999999999999999999999 999999832      5799999999999865 999999985

>d2acaa1 d.63.1.2 (A:8-181) Putative adenylate cyclase VP1760 {Vibrio parahaemolyticus [TaxId: 670]}

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Putative adenylate cyclase VP1760
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.80  E-value=2.4e-20  Score=183.38  Aligned_cols=127  Identities=15%  Similarity=0.198  Sum_probs=111.5

Q ss_pred             ccccccccceeeccCCCCCcchhhhccCCeeeEeee--CCEEEEEEcceeecCCCcccCceeEEEEec----cHHHHHHh
Q 003460          253 FQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQS--GIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGLLD  326 (818)
Q Consensus       253 ~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~--~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~~L~~  326 (818)
                      +.+...|.|+||++|+++++..+.++     |+|..  +...++|+||+         +.+.|+|+.|    .|.++|..
T Consensus        30 ~~~~~~q~d~Yfd~p~~~l~~~~~~l-----R~R~~~~~~~~tl~~k~~---------~~~~e~e~~v~~~~~~~~il~~   95 (174)
T d2acaa1          30 MFENNQESDWFYDTPQRTLTQQGKSL-----VLREIQPAGIKLWIVKGP---------EADRCEATNITKLDSAQSMLEN   95 (174)
T ss_dssp             EEEEEEEEEEEEECTTCHHHHTTCEE-----EEEEEETTTEEEEEEECS---------STTBEEEEEBSCHHHHHHHHHH
T ss_pred             ccceEEEEEEEEECCCCchhhCceee-----EEeecCCCcEEEEEEccc---------CCCceEEEecCCHHHHHHHHHh
Confidence            45667889999999999999888877     99976  45677888855         3456889988    99999999


Q ss_pred             cCCceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec--C-------HHHHHHHHHHcCCCCCc-cchhHHHHH
Q 003460          327 LGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--N-------RKTVGAEALRMGINGPW-ITKSYLEMV  394 (818)
Q Consensus       327 LGf~~~~~~~K~R~~~~~~~~~i~lD~v~~lg~~fvEiE~~--~-------~~~i~~~~~~Lgl~~~~-~~~sYlel~  394 (818)
                      |||.+.++++|.|++|.+++++|+||+|+++|. |+|||..  +       .+.+.++|++|||+... +++||+||+
T Consensus        96 lg~~~~~~~~k~R~~~~~~~~~v~lD~v~~lg~-f~EiE~~~~~~~~~e~~~~~i~~~~~~LGi~~~~~~~~sY~ell  172 (174)
T d2acaa1          96 MGYEVIQCSKKIRSIFFVGEFHITLDFLDGFGH-FAEFAIMTDDETALARYRERLVALAQQFHLSEADREHRSYKEIL  172 (174)
T ss_dssp             TTCEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEEESCSGGGTTHHHHHHHHHHHTTCCGGGBCCSCTTTSS
T ss_pred             CCCceEEEEEEEEEEEEECCEEEEEEEecCCCc-EEEEEEEeCCccchHHHHHHHHHHHHHcCcCcccccccCHHHHh
Confidence            999999999999999999999999999999999 9999976  1       26899999999998755 999999986

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.77  E-value=7.5e-20  Score=180.87  Aligned_cols=168  Identities=17%  Similarity=0.204  Sum_probs=117.7

Q ss_pred             cCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccchhhhhc-c------cCCCcccccHHHHHHHHHHH
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQVKD-F------KYDDFSSLDLSLLSKNISDI  580 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~~~~~~-~------~~d~p~t~D~~ll~~~L~~L  580 (818)
                      +.+.|+||||+||+||||||||+.|++.++     +.++++|+||.+..... .      ++..+...+...+...+..+
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQL   97 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGT
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhccccccceeccccccccCHHHHHHhhcccccccCcchHHHHHHHHHHHHHh
Confidence            556799999999999999999999999875     45778899988743221 1      12223444555556667778


Q ss_pred             hcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch
Q 003460          581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ  660 (818)
Q Consensus       581 ~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~  660 (818)
                      +.|..+..|.|++..+.+..  ......+.+++++||.+++++.+.+.+|++||++++.++++.|++.|+    |.+.+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ivi~e~~~~~~~~~~~~~d~~i~l~~~~e~~~~R~~~r~----~~~~~~  171 (198)
T d1rz3a_          98 KASHQLTLPFYDHETDTHSK--RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQV----KQNIQK  171 (198)
T ss_dssp             TTCSEEEEEEEETTTTEEEE--EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC------------------CHHH
T ss_pred             hccCccccccchhhhccccc--cccccccccccccccchhccccccccceeeeeccCcHHHHHHHHHHHc----CCCHHH
Confidence            88999999999999887653  334445678999999999999999999999999999999999988875    555443


Q ss_pred             -hhHHHhhcchhhhhccccCCcccEEEe
Q 003460          661 -NDIMMTVFPMFQQHIEPHLVHAHLKIR  687 (818)
Q Consensus       661 -~~~~~~v~p~~~~~I~p~~~~ADivI~  687 (818)
                       ...+....+.|.++++|. ++||+||+
T Consensus       172 ~~~~~~~~~~~y~~~~~p~-~~ADiIid  198 (198)
T d1rz3a_         172 FINRYWKAEDYYLETEEPI-KRADVVFD  198 (198)
T ss_dssp             HHHHHHHHHHHHHHHHCHH-HHCSEEEC
T ss_pred             HHHHHHHHHHHHHHhcChH-HhCCEEeC
Confidence             233445678899999885 68999985

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.71  E-value=5.8e-18  Score=167.04  Aligned_cols=162  Identities=18%  Similarity=0.268  Sum_probs=109.1

Q ss_pred             hcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceecccccCC---C--------CCcccHHHHHHHHHhh
Q 003460           58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDEGN---D--------LDSIDFDALVQNLQDL  121 (818)
Q Consensus        58 ~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~~~~---~--------~~~~d~~~l~~~L~~l  121 (818)
                      +..++++|||+|++||||||||+.|++.++     +.+++.|+|+.......   .        ....+...+...+..+
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQL   97 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGT
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhccccccceeccccccccCHHHHHHhhcccccccCcchHHHHHHHHHHHHHh
Confidence            456789999999999999999999999875     45678888866422111   1        1222333334445567


Q ss_pred             hcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHH
Q 003460          122 TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLI  201 (818)
Q Consensus       122 ~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~  201 (818)
                      ..+..+..|.+++..+.+... ....+...++++||.+++++.+...+|++||+++|.++++.|++.|+.   .+.+++.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivi~e~~~~~~~~~~~~~d~~i~l~~~~e~~~~R~~~r~~---~~~~~~~  173 (198)
T d1rz3a_          98 KASHQLTLPFYDHETDTHSKR-TVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQVK---QNIQKFI  173 (198)
T ss_dssp             TTCSEEEEEEEETTTTEEEEE-EEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC-----------------CHHHHH
T ss_pred             hccCccccccchhhhcccccc-ccccccccccccccchhccccccccceeeeeccCcHHHHHHHHHHHcC---CCHHHHH
Confidence            777888889888888766543 334556779999999999999999999999999999999999998863   3555555


Q ss_pred             Hhh---chhhhhccCCccccCcEEEE
Q 003460          202 DSI---FPLFRKHIEPDLHHAQIRIN  224 (818)
Q Consensus       202 ~~~---~p~~~~~Iep~~~~ADiII~  224 (818)
                      +++   .+.|.++++| +++||+||+
T Consensus       174 ~~~~~~~~~y~~~~~p-~~~ADiIid  198 (198)
T d1rz3a_         174 NRYWKAEDYYLETEEP-IKRADVVFD  198 (198)
T ss_dssp             HHHHHHHHHHHHHHCH-HHHCSEEEC
T ss_pred             HHHHHHHHHHHHhcCh-HHhCCEEeC
Confidence            543   5777777777 569999985

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.65  E-value=3.8e-17  Score=164.31  Aligned_cols=155  Identities=19%  Similarity=0.227  Sum_probs=105.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-----------------CCCcccHHHHHHHHHhhh--
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQDLT--  122 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~~~d~~~l~~~L~~l~--  122 (818)
                      +++|||||++||||||+|+.|++ +|++++++|.+.+.+...+                 ..+.++...+.+.+..-.  
T Consensus         2 ~~iIgITG~igSGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~~~~~~~~~d~~i~r~~l~~~vf~~~~~   80 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED   80 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH-CCCeEEEchHHHHHHHhccchhHHHHHHhcccceecCCCcccHHHHhhhhhhhhhh
Confidence            37999999999999999999975 8999999999866432211                 113455555555444211  


Q ss_pred             --cCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHH
Q 003460          123 --EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL  200 (818)
Q Consensus       123 --~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~  200 (818)
                        .-+.+.+|.........     .......++++|++++++..+...||.+|+|+||.+.++.|++.|+.........+
T Consensus        81 ~~~l~~i~hp~v~~~~~~~-----~~~~~~~~vv~e~~ll~e~~~~~~~d~ii~v~~~~~~r~~R~~~R~~~s~e~~~~~  155 (205)
T d1jjva_          81 KLWLNNLLHPAIRERMKQK-----LAEQTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRDNNNFEQIQRI  155 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-----HHTCCSSEEEEECTTTTTTTCGGGCSEEEEEECCHHHHHHHHC-----CHHHHHHH
T ss_pred             hhHhhcccCHHHHHHHHHH-----HhhccCCeEEEEeccccccchhhhhhheeeecchHHHHHHHHHhcCCchHHHHHHH
Confidence              11223334333222222     12234568999999999988999999999999999999999999986555555666


Q ss_pred             HHhhchhhhhccCCccccCcEEEECCC
Q 003460          201 IDSIFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       201 ~~~~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      ++.+++..++     ++.||+||+|+.
T Consensus       156 ~~~Q~~~~~k-----~~~aD~vI~N~~  177 (205)
T d1jjva_         156 MNSQVSQQER-----LKWADDVINNDA  177 (205)
T ss_dssp             HHHSCCHHHH-----HHHCSEEEECCS
T ss_pred             HHhCCCHHHH-----HHhCCEEEECCC
Confidence            6677777666     689999999995

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=5.3e-16  Score=156.22  Aligned_cols=154  Identities=19%  Similarity=0.141  Sum_probs=112.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-----------------CCCcccHHHHHHHHHhh----
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQDL----  121 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~~~d~~~l~~~L~~l----  121 (818)
                      ++|||||++||||||+|+.|+ .+|+.++++|.+.+.+...+                 ..+..+...+...+..-    
T Consensus         4 ~iIgitG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fg~~i~~~~~~i~r~~L~~~vf~~~~~~   82 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA-DLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEK   82 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH-HTTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH-HCCCcEEEchHHHHHHHhccchHHHHHHHHhhcccccCCcccchhhhhhhhhhhHHHH
Confidence            699999999999999999997 47999999999876443221                 22445666665544321    


Q ss_pred             hcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHH
Q 003460          122 TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLI  201 (818)
Q Consensus       122 ~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~  201 (818)
                      ..-+.+.+|.+........     ......++++|++.+++..+...+|.+|+|+|+.++|++|.+.|+...+.....+.
T Consensus        83 ~~Le~i~hp~v~~~~~~~~-----~~~~~~~~~~e~~ll~e~~~~~~~~~iI~V~a~~e~r~~R~~~R~~~~~~~~~~~~  157 (208)
T d1vhta_          83 NWLNALLHPLIQQETQHQI-----QQATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQIL  157 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-----HHCCSSEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHH-----HHhhcCCcceeeeecccccccccCCEEEEEeCCHHHHHHHHHHhhhhhHHHHHHHH
Confidence            1112234454443332221     12335688999999999889999999999999999999999999866555566667


Q ss_pred             HhhchhhhhccCCccccCcEEEECCC
Q 003460          202 DSIFPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       202 ~~~~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      ..+++...+     ++.||+||+|+.
T Consensus       158 ~~Q~~~~~k-----~~~aD~vI~N~~  178 (208)
T d1vhta_         158 AAQATREAR-----LAVADDVIDNNG  178 (208)
T ss_dssp             HHSCCHHHH-----HHHCSEEEECSS
T ss_pred             HhCCCHHHH-----HHhCCEEEECCC
Confidence            777777776     689999999995

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=1.9e-16  Score=156.82  Aligned_cols=156  Identities=15%  Similarity=0.090  Sum_probs=105.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceeccccc------------CCCCCcccHHHHHHHHHhh----hcC
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE------------GNDLDSIDFDALVQNLQDL----TEG  124 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~------------~~~~~~~d~~~l~~~L~~l----~~~  124 (818)
                      .|++|||+|++||||||+|+.|++ +|+.++++|.+.+.+..            ....+.++...+...+..-    ...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~-~g~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l   80 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS-WGYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKAL   80 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH-TTCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEEccHHHHHhhhcccccccccccceeccCchhhhhHHHhhhcCchhhhhh
Confidence            589999999999999999999965 89999999997542211            0112445555554443211    011


Q ss_pred             CccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhh
Q 003460          125 KDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSI  204 (818)
Q Consensus       125 ~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~  204 (818)
                      ....+|......    . .........++|+|+..++...+...+|.+|||+||.+.+++|.+.|+.........+.+.+
T Consensus        81 ~~~~~~~~~~~~----~-~~~~~~~~~~vi~e~~~~~~~~~~~~~d~vI~v~a~~e~r~~Rl~~R~~~~~~~~~~~~~~q  155 (191)
T d1uf9a_          81 EAVVHPEVRRLL----M-EELSRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMARSGLSREEVLARERAQ  155 (191)
T ss_dssp             HHHHHHHHHHHH----H-HHHHTCCCSEEEEECTTTTTTTCGGGSSEEEEECCCHHHHHHHHHTTTCCTTHHHHHHHTTS
T ss_pred             hhhhhHHHHHHH----H-hhhhhcccceEEEEeeccccccccccceeEEEEecchhhHHHHHHhcccchHHHHHHHHHhC
Confidence            111222211111    1 11223345689999999999888999999999999999999999999755444444455566


Q ss_pred             chhhhhccCCccccCcEEEECCC
Q 003460          205 FPLFRKHIEPDLHHAQIRINNRF  227 (818)
Q Consensus       205 ~p~~~~~Iep~~~~ADiII~N~~  227 (818)
                      .|...+     ++.||+||+|+.
T Consensus       156 ~~~~~~-----~~~aD~vI~N~~  173 (191)
T d1uf9a_         156 MPEEEK-----RKRATWVLENTG  173 (191)
T ss_dssp             CCHHHH-----HHHCSEEECCSS
T ss_pred             CCHHHH-----HHhCCEEEECCC
Confidence            666654     688999999883

>d2jmua1 d.63.1.2 (A:2-224) Thiamine-triphosphatase (ThTPase) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Thiamine-triphosphatase (ThTPase)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.2e-15  Score=155.39  Aligned_cols=142  Identities=11%  Similarity=0.045  Sum_probs=121.6

Q ss_pred             ccccccccccccceeeccCCCCCcchhhhccCCeeeEeeeCCEEEEEEcceeecCCCcccCceeEEEEec----------
Q 003460          249 SISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----------  318 (818)
Q Consensus       249 ~~~~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----------  318 (818)
                      .++.+.....++|+|||+|+++|+.++.++     |+|. +.+..+|+|++.-..++.  ..+.|++..+          
T Consensus        24 ~~~~~~~~~~l~d~YfDtpd~~L~~~~~aL-----RiR~-~~~~~lt~k~~~~~~~~~--~~~~E~~~~~~~~~~~~~~~   95 (223)
T d2jmua1          24 LGATLEHRVTFRDTYYDTSELSLMLSDHWL-----RQRE-GSGWELKCPGVTGVSGPH--NEYVEVTSEAAIVAQLFELL   95 (223)
T ss_dssp             HTCEEEEEEEEEEEEEECTTSHHHHTTCEE-----EEET-TTEEEEEECSCSSCCSSC--CSCEEECCHHHHHHHHHHHH
T ss_pred             cCCcccccEEEEEEEEcCCChhHHhCCceE-----EeEe-CCCceEEEecCCCCCcce--eeeccccccccchhhhhhhc
Confidence            346677888999999999999999999888     9995 788899999776665664  6778877543          


Q ss_pred             --------cHHHHHHhcCCceeEEEEEEEEEEEe---------CCEEEEEeccCCCCCCeEEEEec--CH-------HHH
Q 003460          319 --------MTLGGLLDLGYSVVASYKRASTYVVY---------GNLSVSFETIDTLDETFMVLRGT--NR-------KTV  372 (818)
Q Consensus       319 --------~~~~~L~~LGf~~~~~~~K~R~~~~~---------~~~~i~lD~v~~lg~~fvEiE~~--~~-------~~i  372 (818)
                              .+..+|..|||.+++.++|.|++|++         ++++|+||.++++|. |+|||.+  +.       +.|
T Consensus        96 ~~~~~~~~~~~~~l~~lg~~~~~~~~k~R~~~~l~~~~~~~~~~~~~v~lD~~~~~~~-~~EiE~~~~~~~~~~~a~~~i  174 (223)
T d2jmua1          96 GSGEQKPAGVAAVLGSLKLQEVASFITTRSSWKLALSGAHGQEPQLTIDLDSADFGYA-VGEVEAMVHEKAEVPAALEKI  174 (223)
T ss_dssp             TCCSCCCSSHHHHHHHHTCEEEEEEEEEEEEEEEECCSTTSCCCEEEEEEEEETTTEE-EEEEEEEESCGGGHHHHHHHH
T ss_pred             CccccchhHHHHHHhhcCCeEEEEEEEEEEEEEeccCCcccccceEEEEEEcccCCce-EEEEEEEeCCcchHHHHHHHH
Confidence                    67899999999999999999999987         489999999999998 9999987  22       677


Q ss_pred             HHHHHHcCCCCCccchhHHHHHHhhcC
Q 003460          373 GAEALRMGINGPWITKSYLEMVLEKKG  399 (818)
Q Consensus       373 ~~~~~~Lgl~~~~~~~sYlel~l~~~~  399 (818)
                      .+++++||+.++..++|||+.+|++..
T Consensus       175 ~~~~~~lGl~~~~~~~skl~~~l~~~~  201 (223)
T d2jmua1         175 ITVSSMLGVPAQEEAPAKLMVYLQRFR  201 (223)
T ss_dssp             HHHHHHHEEECCSSCCCHHHHHHHHHC
T ss_pred             HHHHHHcCCCcCcCCchHHHHHHHhcC
Confidence            889999999988888899999998663

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=1e-14  Score=152.89  Aligned_cols=179  Identities=15%  Similarity=0.211  Sum_probs=119.2

Q ss_pred             HHHHHHHHHH-hcCCcEEEEEeCCCCCcHHHHHHHHHHHh--------CCeEEeccceecccc----------------c
Q 003460           48 LVKSIQELRE-KKGGIVTVGIGGPSGSGKTSLAEKLASVI--------GCTLISMENYRVGVD----------------E  102 (818)
Q Consensus        48 l~~~i~~~~~-~~~~~~iIgI~G~sGSGKSTlA~~La~~L--------g~~vI~~D~~~~~~~----------------~  102 (818)
                      +-+.+....+ ..+.|++|||+|++||||||+|..|...|        .+.+||+|+||....                .
T Consensus        12 ~~~~~~~~~~~~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~t~~~r~~L~~~~~~~pl~~~   91 (286)
T d1odfa_          12 LDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQG   91 (286)
T ss_dssp             HHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSS
T ss_pred             HHHHHHHHHhcCCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCCCCHHHHHHHhhhcccccccee
Confidence            3333443333 34568999999999999999999887655        256789999987421                2


Q ss_pred             CCCCCcccHHHHHHHHHhhhcCC------ccccccchhhhhc----cccccccccCCccEEEEEecccchhh--------
Q 003460          103 GNDLDSIDFDALVQNLQDLTEGK------DTLIPMFDYQQKN----RIGSKVIKGASSGVVIVDGTYALDAR--------  164 (818)
Q Consensus       103 ~~~~~~~d~~~l~~~L~~l~~~~------~i~~p~~d~~~~~----~~~~~~~~~~~~~vVIvEG~~l~~~~--------  164 (818)
                      ++.|+++|.+.+.+.|..+..+.      .+.+|.||+..+.    +........++.++||+||+++....        
T Consensus        92 RG~PgThD~~ll~~~l~~l~~~~~~~~~~~v~iP~fDk~~~~~~~Dr~~~~~~i~~~~dviI~EGWcvG~~p~~~~~~~~  171 (286)
T d1odfa_          92 RGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPILQGIENN  171 (286)
T ss_dssp             SCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCCSCTTTC
T ss_pred             cCCCcchhHHHHHHHHHHHHhhccccccccccCCchHHHhhccccccCcccceecCCCCEEEEechhhcccchhhhhhcc
Confidence            46799999999999999998764      5889999998754    44333333456789999997765410        


Q ss_pred             -----------------------hhcCCCEEEEEEcC-HHHHHHHHHHhc------cCCCcC---HHHHHHhhchhhhhc
Q 003460          165 -----------------------LRSLLDIRVAVVGG-VHFSLISKVQYD------IGDSCS---LDSLIDSIFPLFRKH  211 (818)
Q Consensus       165 -----------------------l~~~~D~~I~Vda~-~e~~l~Rri~Rd------~~~~~s---~e~~~~~~~p~~~~~  211 (818)
                                             ...+.|+.|++.++ .+.-..||.+-+      .....+   +.+++..+.+.++.+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~Lka~~f~~V~~WR~~QE~~L~~~~g~gMs~eqv~~FV~~y~~~~~~~  251 (286)
T d1odfa_         172 DLLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDRYMPSYKLY  251 (286)
T ss_dssp             SSSCTTHHHHHHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHHHHHHTTHHHHHHH
T ss_pred             ccchhhhhHHHHHHHHHHHHHHhhhhhccccccccCCchhHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence                                   01345777899885 444455554322      222334   345555667766665


Q ss_pred             c------CCccccCcEEEECC
Q 003460          212 I------EPDLHHAQIRINNR  226 (818)
Q Consensus       212 I------ep~~~~ADiII~N~  226 (818)
                      +      .+....||+++.=|
T Consensus       252 l~~~~~~~~lp~~adlvl~lD  272 (286)
T d1odfa_         252 LNDFVRSESLGSIATLTLGID  272 (286)
T ss_dssp             HHHHHHHTCSSSSEEEEEEEC
T ss_pred             HHhhhhccCCCCcceEEEEEC
Confidence            5      34567889888544

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.45  E-value=2.4e-14  Score=141.38  Aligned_cols=160  Identities=18%  Similarity=0.165  Sum_probs=103.4

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh------hhcc--cCCCcccccHHHHHHHHHH----Hhc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ------VKDF--KYDDFSSLDLSLLSKNISD----IRN  582 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~------~~~~--~~d~p~t~D~~ll~~~L~~----L~~  582 (818)
                      +.|+||||+|++||||||+|+.|.+ +|+.++++|++.+...      ....  .+-..+.++...+.+.+..    +..
T Consensus         1 k~p~IIgitG~~gSGKstva~~l~~-~g~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~   79 (191)
T d1uf9a_           1 KHPIIIGITGNIGSGKSTVAALLRS-WGYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKA   79 (191)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHH-TTCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEEccHHHHHhhhcccccccccccceeccCchhhhhHHHhhhcCchhhhh
Confidence            3699999999999999999999965 8999999999876511      1111  1112356677776654311    111


Q ss_pred             CCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch-h
Q 003460          583 GRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-N  661 (818)
Q Consensus       583 g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~-~  661 (818)
                      ......|........     .+ ...+..++|+|+...+...+...+|..|||+++.+++++|.+.|+    |.+.+. .
T Consensus        80 l~~~~~~~~~~~~~~-----~~-~~~~~~~vi~e~~~~~~~~~~~~~d~vI~v~a~~e~r~~Rl~~R~----~~~~~~~~  149 (191)
T d1uf9a_          80 LEAVVHPEVRRLLME-----EL-SRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMARS----GLSREEVL  149 (191)
T ss_dssp             HHHHHHHHHHHHHHH-----HH-HTCCCSEEEEECTTTTTTTCGGGSSEEEEECCCHHHHHHHHHTTT----CCTTHHHH
T ss_pred             hhhhhhHHHHHHHHh-----hh-hhcccceEEEEeeccccccccccceeEEEEecchhhHHHHHHhcc----cchHHHHH
Confidence            111222322111100     11 123457899999998888888999999999999999999999986    333332 2


Q ss_pred             hHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460          662 DIMMTVFPMFQQHIEPHLVHAHLKIRNDF  690 (818)
Q Consensus       662 ~~~~~v~p~~~~~I~p~~~~ADivI~n~~  690 (818)
                      .......|....     +..||++|+|+-
T Consensus       150 ~~~~~q~~~~~~-----~~~aD~vI~N~~  173 (191)
T d1uf9a_         150 ARERAQMPEEEK-----RKRATWVLENTG  173 (191)
T ss_dssp             HHHTTSCCHHHH-----HHHCSEEECCSS
T ss_pred             HHHHhCCCHHHH-----HHhCCEEEECCC
Confidence            223333343322     467999999874

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.44  E-value=1.6e-14  Score=144.85  Aligned_cols=159  Identities=19%  Similarity=0.214  Sum_probs=99.4

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh----h-----hh-cc---cCCCcccccHHHHHHHHHH----
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE----Q-----VK-DF---KYDDFSSLDLSLLSKNISD----  579 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~----~-----~~-~~---~~d~p~t~D~~ll~~~L~~----  579 (818)
                      .++|||+|++||||||+|+.|.+ +|+.++++|.+++.-    .     .. .+   ....-+.+|...|.+.+..    
T Consensus         2 ~~iIgITG~igSGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~~~~~~~~~d~~i~r~~l~~~vf~~~~~   80 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED   80 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH-CCCeEEEchHHHHHHHhccchhHHHHHHhcccceecCCCcccHHHHhhhhhhhhhh
Confidence            47999999999999999999975 899999999987641    0     01 11   1122356777777765532    


Q ss_pred             HhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccc
Q 003460          580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS  659 (818)
Q Consensus       580 L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~  659 (818)
                      +..-..+.+|........      +....+.+++++|+.++++..+...+|..|+|++|.++|+.|++.|+    |.+.+
T Consensus        81 ~~~l~~i~hp~v~~~~~~------~~~~~~~~~vv~e~~ll~e~~~~~~~d~ii~v~~~~~~r~~R~~~R~----~~s~e  150 (205)
T d1jjva_          81 KLWLNNLLHPAIRERMKQ------KLAEQTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRD----NNNFE  150 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHH------HHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEECCHHHHHHHHC---------CHH
T ss_pred             hhHhhcccCHHHHHHHHH------HHhhccCCeEEEEeccccccchhhhhhheeeecchHHHHHHHHHhcC----CchHH
Confidence            111122334432222111      11123457899999999988889999999999999999999999997    33333


Q ss_pred             h-hhHHHhhcchhhhhccccCCcccEEEeCCCC
Q 003460          660 Q-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD  691 (818)
Q Consensus       660 ~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~  691 (818)
                      . .+......+..+.     +..||+||+|+-+
T Consensus       151 ~~~~~~~~Q~~~~~k-----~~~aD~vI~N~~~  178 (205)
T d1jjva_         151 QIQRIMNSQVSQQER-----LKWADDVINNDAE  178 (205)
T ss_dssp             HHHHHHHHSCCHHHH-----HHHCSEEEECCSC
T ss_pred             HHHHHHHhCCCHHHH-----HHhCCEEEECCCC
Confidence            2 2333333443322     4679999999854

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=2.2e-13  Score=136.74  Aligned_cols=160  Identities=18%  Similarity=0.163  Sum_probs=109.1

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------h-hcc---cCCCcccccHHHHHHHHHH----
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V-KDF---KYDDFSSLDLSLLSKNISD----  579 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~---------~-~~~---~~d~p~t~D~~ll~~~L~~----  579 (818)
                      ++||||+|++||||||+|+.|. .+|+.++++|.+.+.--         . ..+   .++..+..|...|.+.+..    
T Consensus         3 k~iIgitG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fg~~i~~~~~~i~r~~L~~~vf~~~~~   81 (208)
T d1vhta_           3 RYIVALTGGIGSGKSTVANAFA-DLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEE   81 (208)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHH-HTTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHH
T ss_pred             CEEEEEECCCcCCHHHHHHHHH-HCCCcEEEchHHHHHHHhccchHHHHHHHHhhcccccCCcccchhhhhhhhhhhHHH
Confidence            4799999999999999999997 48999999999987510         0 111   1345567888877765533    


Q ss_pred             HhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccc
Q 003460          580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS  659 (818)
Q Consensus       580 L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~  659 (818)
                      +..-+.+.+|.+........      ......++++|+.+++...+...+|..|+|+++.++|+.|.+.|+...++..  
T Consensus        82 ~~~Le~i~hp~v~~~~~~~~------~~~~~~~~~~e~~ll~e~~~~~~~~~iI~V~a~~e~r~~R~~~R~~~~~~~~--  153 (208)
T d1vhta_          82 KNWLNALLHPLIQQETQHQI------QQATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHV--  153 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH------HHCCSSEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHHTCCHHHH--
T ss_pred             HHHHHHHhHHHHHHHHHHHH------HHhhcCCcceeeeecccccccccCCEEEEEeCCHHHHHHHHHHhhhhhHHHH--
Confidence            11122345565444322211      1223478999999999888999999999999999999999999974432221  


Q ss_pred             hhhHHHhhcchhhhhccccCCcccEEEeCCCC
Q 003460          660 QNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD  691 (818)
Q Consensus       660 ~~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~  691 (818)
                       .+......+....     ...||+||+|+-+
T Consensus       154 -~~~~~~Q~~~~~k-----~~~aD~vI~N~~~  179 (208)
T d1vhta_         154 -EQILAAQATREAR-----LAVADDVIDNNGA  179 (208)
T ss_dssp             -HHHHHHSCCHHHH-----HHHCSEEEECSSC
T ss_pred             -HHHHHhCCCHHHH-----HHhCCEEEECCCC
Confidence             2233333333333     4679999999854

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.87  E-value=1.1e-09  Score=104.69  Aligned_cols=137  Identities=12%  Similarity=0.149  Sum_probs=74.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccccc
Q 003460           65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKV  144 (818)
Q Consensus        65 IgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~~  144 (818)
                      |.|+|++||||||+|+.||+.||++++|+|.+.......      ....+....     +.    +.+.... ..+. ..
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~~g~------~i~~~~~~~-----g~----~~~r~~e-~~v~-~~   65 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQ------KVSEIFEQK-----RE----NFFREQE-QKMA-DF   65 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTS------CHHHHHHHH-----CH----HHHHHHH-HHHH-HH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhHHhh------hhhhHHHhh-----hh----ccchhhh-hhhc-hh
Confidence            778899999999999999999999999999864321110      000000000     00    0000000 0010 11


Q ss_pred             cccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC---cC---HHHHHHhhchhhhhccCCcccc
Q 003460          145 IKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS---CS---LDSLIDSIFPLFRKHIEPDLHH  218 (818)
Q Consensus       145 ~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~---~s---~e~~~~~~~p~~~~~Iep~~~~  218 (818)
                      +. ....+|+..|............+.+|||++|.++..+|...|+...+   .+   .+++.+...|.|+       +.
T Consensus        66 l~-~~~~~v~~~~g~~~~~~~l~~~~~vI~L~~s~~~l~~Rl~~~~~~~Rp~~~~~~~~~~l~~~r~~~Y~-------~~  137 (161)
T d1viaa_          66 FS-SCEKACIATGGGFVNVSNLEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYE-------QK  137 (161)
T ss_dssp             HT-TCCSEEEECCTTGGGSTTGGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHHHH-------HH
T ss_pred             hh-hccccccccccchhhHHHHHhCCeEEEeccchHHHHHHHccccccccccccCchHHHHHHHHHHHHHH-------hh
Confidence            11 12234444444333322223357899999999998777655443333   12   2333333345554       47


Q ss_pred             CcEEEECC
Q 003460          219 AQIRINNR  226 (818)
Q Consensus       219 ADiII~N~  226 (818)
                      ||++|+.+
T Consensus       138 ad~~Idt~  145 (161)
T d1viaa_         138 ANFILNIE  145 (161)
T ss_dssp             CSEEEECT
T ss_pred             CCEEEECC
Confidence            89999865

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.87  E-value=9.5e-10  Score=107.81  Aligned_cols=123  Identities=14%  Similarity=0.067  Sum_probs=70.6

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN  138 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~  138 (818)
                      +++|.+|.|.||+||||||+|+.||+.+|..+|+++++++..........   ..+...+.   .+.-............
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~   76 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDG---EMIATMIK---NGEIVPSIVTVKLLKN   76 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTH---HHHHHHHH---TTCCCCHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhhhhhhh---hhhhhHhh---hccccchHHHHHHHHH
Confidence            46789999999999999999999999999999999998663222211111   11111111   1111000000000001


Q ss_pred             cccccccccCCccEEEEEecccchh---hh----h--cCCCEEEEEEcCHHHHHHHHHHhccC
Q 003460          139 RIGSKVIKGASSGVVIVDGTYALDA---RL----R--SLLDIRVAVVGGVHFSLISKVQYDIG  192 (818)
Q Consensus       139 ~~~~~~~~~~~~~vVIvEG~~l~~~---~l----~--~~~D~~I~Vda~~e~~l~Rri~Rd~~  192 (818)
                      +.     ......-++++|.-.-..   .+    .  ...|++||++++.++..+|...|...
T Consensus        77 ~~-----~~~~~~~~i~dg~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~~  134 (194)
T d1qf9a_          77 AI-----DANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGES  134 (194)
T ss_dssp             HH-----HTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTT
T ss_pred             Hh-----hhhhcCCeEEEecchhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhccc
Confidence            10     011123467887643331   11    1  22568999999999999888776543

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.85  E-value=9.6e-10  Score=105.77  Aligned_cols=34  Identities=21%  Similarity=0.447  Sum_probs=31.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460           65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV   98 (818)
Q Consensus        65 IgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~   98 (818)
                      |.++|++||||||+|+.||+.||++++++|.+..
T Consensus         5 Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie   38 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARALGYEFVDTDIFMQ   38 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhh
Confidence            5578999999999999999999999999999854

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.84  E-value=5e-09  Score=99.41  Aligned_cols=137  Identities=18%  Similarity=0.165  Sum_probs=76.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc------cCCCCCcccHHHHHHHHHhhhcCCccccccchhhh
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD------EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ  136 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~------~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~  136 (818)
                      +.|.|+|++||||||+|+.|++.+|..++++|+..+...      ............+...+........          
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------   74 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGG----------   74 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHTTCBCCCCSSSSCCCBCHHHHHHHHHHHHHHCC----------
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHhccccchhHHhhhhhHHHHHHHHHhhhhhhcCC----------
Confidence            347799999999999999999999999999999755211      1111222333333333322111100          


Q ss_pred             hccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHH-HHHhhchhhhhccCCc
Q 003460          137 KNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDS-LIDSIFPLFRKHIEPD  215 (818)
Q Consensus       137 ~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~-~~~~~~p~~~~~Iep~  215 (818)
                                      ..+.+... .-......+..||++++.+...+|...|........+. ........+......+
T Consensus        75 ----------------~~~~~~~~-~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~  137 (173)
T d1rkba_          75 ----------------VIVDYHGC-DFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASY  137 (173)
T ss_dssp             ----------------EEEECSCC-TTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHS
T ss_pred             ----------------cccchhHH-HHHHHhcCCCcceecCCHHHHHHHHHhcCCCcccccccchhhhHHHHHHHHHHHh
Confidence                            11111111 00112345788999999999999988876332111111 1112223333333334


Q ss_pred             cccCcEEEECC
Q 003460          216 LHHAQIRINNR  226 (818)
Q Consensus       216 ~~~ADiII~N~  226 (818)
                      ...++++++|+
T Consensus       138 ~~~~~i~~~~~  148 (173)
T d1rkba_         138 KEEIVHQLPSN  148 (173)
T ss_dssp             CGGGEEEEECS
T ss_pred             hhccEEEECCC
Confidence            55677888876

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.77  E-value=8.4e-09  Score=98.23  Aligned_cols=144  Identities=13%  Similarity=0.016  Sum_probs=79.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEE--eccceecccccCCCC-CcccHHHHHH-HHHhhhcCCccccccchhhh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLI--SMENYRVGVDEGNDL-DSIDFDALVQ-NLQDLTEGKDTLIPMFDYQQ  136 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI--~~D~~~~~~~~~~~~-~~~d~~~l~~-~L~~l~~~~~i~~p~~d~~~  136 (818)
                      +..+|.|+|++||||||+|+.|++.+|.+++  +.|.++..+...... .......... ......           ...
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~   71 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAA-----------DVA   71 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHH-----------HHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCcccccchhhhHHHHHHHHHH-----------HHH
Confidence            3468999999999999999999999997665  567776544332221 1111111111 111000           000


Q ss_pred             hccccccccccCCccEEEEEecccch--hhhh--cCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhhcc
Q 003460          137 KNRIGSKVIKGASSGVVIVDGTYALD--ARLR--SLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHI  212 (818)
Q Consensus       137 ~~~~~~~~~~~~~~~vVIvEG~~l~~--~~l~--~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~~I  212 (818)
                           .  ........+|++|.+...  ..+.  ......+|++++.+.+.+|...|........+.+ ......+    
T Consensus        72 -----~--~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~~~-~~~~~~~----  139 (176)
T d1zp6a1          72 -----G--RYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVV-ADLHSQF----  139 (176)
T ss_dssp             -----H--HHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCCCHHHH-HHHHHHT----
T ss_pred             -----H--HHHhcCCCeEecccccHHHHHHHHhcccccccccCCCCHHHHHHHHHhCCCccccchhhH-HHHHHHH----
Confidence                 0  001123457777765432  2222  3345779999999999999888875433333322 2221121    


Q ss_pred             CCccccCcEEEECCC
Q 003460          213 EPDLHHAQIRINNRF  227 (818)
Q Consensus       213 ep~~~~ADiII~N~~  227 (818)
                      ......++.+|+++.
T Consensus       140 ~~~~~~~~~~idt~~  154 (176)
T d1zp6a1         140 ADLGAFEHHVLPVSG  154 (176)
T ss_dssp             TCCGGGGGGEEECTT
T ss_pred             hhcccccCEEEECCC
Confidence            222455667787663

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.75  E-value=2.2e-08  Score=94.97  Aligned_cols=37  Identities=19%  Similarity=0.277  Sum_probs=30.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEE--eccceec
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLI--SMENYRV   98 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI--~~D~~~~   98 (818)
                      +.+|.|+|++||||||+|+.|++.+|...+  +.|.++.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~   41 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE   41 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhc
Confidence            358999999999999999999999997654  4555544

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.70  E-value=1.4e-09  Score=106.72  Aligned_cols=169  Identities=17%  Similarity=0.145  Sum_probs=85.2

Q ss_pred             cCCCCEEEeeeCCCCccHHHHHHHHHHHhCCccc---ccccccchhh--hhcccCCCcccccHHH----HHHHHHHHhcC
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVV---SLESYFKSEQ--VKDFKYDDFSSLDLSL----LSKNISDIRNG  583 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vi---s~Ddfy~~~~--~~~~~~d~p~t~D~~l----l~~~L~~L~~g  583 (818)
                      +..+|++|+|.|+.||||||+++.|++.++...+   .+|.+.....  ....-+.++..+....    +...+......
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~~~ep~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAP   84 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGGTTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHhCCcEEEEEecCccccccchhHhhhhccccccccchHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999998864332   1232221100  0000011221111111    11111122222


Q ss_pred             Cceecccccccc-cccCCCcce----eeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcc
Q 003460          584 RRTKVPIFDLET-GARSGFKEL----EVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCF  657 (818)
Q Consensus       584 ~~v~~P~yD~~~-~~r~~~~~~----~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~  657 (818)
                      ........+... .++......    .........++++++... ..+....|+.||++++.+.++.|...|......  
T Consensus        85 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdl~i~Ld~~~~~~~~Ri~~R~r~~E~--  162 (197)
T d2vp4a1          85 TNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSEES--  162 (197)
T ss_dssp             CCSSEEEEESCHHHHHHTHHHHHHHHTSSCHHHHHHHHHHHHHHHHHBCCCCSEEEEEECCHHHHHHHHHHHCCGGGT--
T ss_pred             hcccccccCceeecchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcccccchhheeecCHHHHHHHHHHhCchhhh--
Confidence            111111111111 011000000    000111222334444332 334456899999999999999998776422111  


Q ss_pred             cchhhHHHhhcchhhhhccccCCccc
Q 003460          658 MSQNDIMMTVFPMFQQHIEPHLVHAH  683 (818)
Q Consensus       658 ~~~~~~~~~v~p~~~~~I~p~~~~AD  683 (818)
                      ....+|+..+.+.|++|+.+.....+
T Consensus       163 ~i~~~yl~~l~~~Y~~~~~~~~~~~~  188 (197)
T d2vp4a1         163 CVPLKYLQELHELHEDWLIHQRRPQS  188 (197)
T ss_dssp             TCCHHHHHHHHHHHHHHHTSCCSSCC
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            11246888899999999988765444

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=5.4e-08  Score=92.25  Aligned_cols=39  Identities=21%  Similarity=0.239  Sum_probs=35.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV   98 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~   98 (818)
                      ..+.+|.|+|++||||||+|+.|++.+|+..++.|.+..
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~   42 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHP   42 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhH
Confidence            456788899999999999999999999999999999865

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.69  E-value=2e-08  Score=99.89  Aligned_cols=38  Identities=26%  Similarity=0.475  Sum_probs=35.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG   99 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~   99 (818)
                      +++|+|+||+||||||+|+.||+.||.++||++++||.
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~   40 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRA   40 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHH
Confidence            46799999999999999999999999999999999884

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.67  E-value=1.8e-09  Score=105.86  Aligned_cols=56  Identities=5%  Similarity=-0.002  Sum_probs=41.9

Q ss_pred             hhcCCCEEEEEEcCHHHHHHHHHHhccCCCc-CHHHHHHhhchhhhhccCCccccCc
Q 003460          165 LRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLIDSIFPLFRKHIEPDLHHAQ  220 (818)
Q Consensus       165 l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~-s~e~~~~~~~p~~~~~Iep~~~~AD  220 (818)
                      +....|+.|||+++++.+++|..+|...... -..+.++.+.+.|++|+.+.....+
T Consensus       132 ~~~~pdl~i~Ld~~~~~~~~Ri~~R~r~~E~~i~~~yl~~l~~~Y~~~~~~~~~~~~  188 (197)
T d2vp4a1         132 IHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQS  188 (197)
T ss_dssp             BCCCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCC
T ss_pred             cccccchhheeecCHHHHHHHHHHhCchhhhcCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4456899999999999999999888754332 1234677788999998877765444

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.66  E-value=7.1e-09  Score=96.76  Aligned_cols=133  Identities=14%  Similarity=0.058  Sum_probs=71.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHH-hCCeEEeccceecccccCCCC--CcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASV-IGCTLISMENYRVGVDEGNDL--DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR  139 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~-Lg~~vI~~D~~~~~~~~~~~~--~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~  139 (818)
                      .+|.|+|++||||||+|+.|++. .|+.+++.|++.+........  ..++... ......+..              ..
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------------~~   67 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKK-EGIVTGMQF--------------DT   67 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHH-HHHHHHHHH--------------HH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhhhhh-hHHHHHHHH--------------HH
Confidence            57889999999999999998654 478999999986543222111  1112111 000000000              00


Q ss_pred             ccccccccCCccEEEEEecccchh-------hhh--cCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhh
Q 003460          140 IGSKVIKGASSGVVIVDGTYALDA-------RLR--SLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRK  210 (818)
Q Consensus       140 ~~~~~~~~~~~~vVIvEG~~l~~~-------~l~--~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~  210 (818)
                      .............+|+++.+....       .+.  ..-...||+++|.+++++|...|..  +...++.+..+...+++
T Consensus        68 ~~~~~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~--~~~~~~~i~~~~~~~~~  145 (152)
T d1ly1a_          68 AKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT--KAVPIDVLRSMYKSMRE  145 (152)
T ss_dssp             HHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG--GCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccCCCcccccccCCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHHccCC--CCCCHHHHHHHHHHHHh
Confidence            000000111233577777665431       111  1224678999999999888877742  22334455555555555


Q ss_pred             cc
Q 003460          211 HI  212 (818)
Q Consensus       211 ~I  212 (818)
                      |.
T Consensus       146 ~~  147 (152)
T d1ly1a_         146 YL  147 (152)
T ss_dssp             HH
T ss_pred             hc
Confidence            44

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.64  E-value=1.6e-08  Score=95.64  Aligned_cols=39  Identities=26%  Similarity=0.300  Sum_probs=32.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCe-EEeccceecccc
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCT-LISMENYRVGVD  101 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~-vI~~D~~~~~~~  101 (818)
                      .+|.|+|++||||||+|+.|++.++.. +++.|.++....
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~   42 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVV   42 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHh
Confidence            579999999999999999999999865 567777765443

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=2.4e-08  Score=97.36  Aligned_cols=127  Identities=13%  Similarity=0.089  Sum_probs=73.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG  141 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~  141 (818)
                      |++|.|.||+||||||+|+.||+.+|..+|+++++++........  -....+...+   ..+..+.-............
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~~~~--~~~~~~~~~~---~~~~~v~d~~~~~~~~~~~~   75 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDS--QYGELIEKYI---KEGKIVPVEITISLLKREMD   75 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTS--TTHHHHHHHH---HTTCCCCHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHhhhh--hHHHHHHHHH---hcCCccccchhhHHHHHhhc
Confidence            689999999999999999999999999999999988743322111  1111122222   22322211111111111111


Q ss_pred             ccccccCCccEEEEEecccchh---hh----h--cCCCEEEEEEcCHHHHHHHHHHhccCC
Q 003460          142 SKVIKGASSGVVIVDGTYALDA---RL----R--SLLDIRVAVVGGVHFSLISKVQYDIGD  193 (818)
Q Consensus       142 ~~~~~~~~~~vVIvEG~~l~~~---~l----~--~~~D~~I~Vda~~e~~l~Rri~Rd~~~  193 (818)
                      ...........++++|.-.-..   .+    .  ...|.+++++++.+....|...|....
T Consensus        76 ~~~~~~~~~~~~~~~g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~  136 (194)
T d1teva_          76 QTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSS  136 (194)
T ss_dssp             HHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTS
T ss_pred             ccchhhhcccceeeccchhhHHHHHHHhhhhhccccccEEEeecCcchhheeecccCCCcc
Confidence            1111112334577887653321   11    1  223678999999999999998885443

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.62  E-value=5.5e-08  Score=92.33  Aligned_cols=40  Identities=25%  Similarity=0.342  Sum_probs=33.2

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-eEEeccceec
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGC-TLISMENYRV   98 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~-~vI~~D~~~~   98 (818)
                      +++++.|.|+|++||||||+|+.|++.++. .+++.|++..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~   42 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVK   42 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHH
Confidence            466788999999999999999999999974 6666666543

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.62  E-value=2.8e-09  Score=101.95  Aligned_cols=34  Identities=26%  Similarity=0.438  Sum_probs=30.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460           65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV   98 (818)
Q Consensus        65 IgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~   98 (818)
                      |.++|++||||||+|+.||+.||.+++++|.+..
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~~fiD~D~~ie   37 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIE   37 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCeEeeccchh
Confidence            4466999999999999999999999999998743

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.59  E-value=1.8e-08  Score=95.96  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=30.6

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK  553 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~  553 (818)
                      |.|+|++||||||+++.|++.||+.++++|++..
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie   36 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIE   36 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEecCchhh
Confidence            5567999999999999999999999999998743

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.58  E-value=3.2e-08  Score=96.38  Aligned_cols=122  Identities=16%  Similarity=0.036  Sum_probs=67.8

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI  140 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~  140 (818)
                      .|+.|.|.||+||||||+|+.|++.+|..+|+++++.+........   ....+...   +..+..+.............
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~---~~~~~~~~---~~~g~~~~~~~~~~~~~~~~   75 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSE---NGKRAKEF---MEKGQLVPDEIVVNMVKERL   75 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCH---HHHHHHHH---HHTTCCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccH---HHHHHHHH---HhcCCcccceeehhhhhhHh
Confidence            4667889999999999999999999999999999876632211110   00111111   11121111000000000000


Q ss_pred             cccccccCCccEEEEEecccch------hhhhcCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460          141 GSKVIKGASSGVVIVDGTYALD------ARLRSLLDIRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       141 ~~~~~~~~~~~vVIvEG~~l~~------~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                      ..   .......++++|.....      .......|..||++++.+....|...|+.
T Consensus        76 ~~---~~~~~~~~vid~~~~~~~q~~~l~~~~~~p~~~i~L~~~~e~l~~R~~~~~~  129 (189)
T d1zaka1          76 RQ---PDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVFDDT  129 (189)
T ss_dssp             HS---HHHHHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTTCC
T ss_pred             hh---cccccCcEEeeccchhhHHHhhhhhcccccchheeechhhhhhhhhccccch
Confidence            00   00111236777764432      12223457999999999998888766664

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.58  E-value=5.3e-08  Score=93.03  Aligned_cols=37  Identities=22%  Similarity=0.277  Sum_probs=30.4

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccch
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKS  554 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~  554 (818)
                      .+|+|+|++||||||+++.|++.|+     +.+++.+++...
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~   43 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFE   43 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHH
Confidence            4799999999999999999999884     446667776654

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.58  E-value=5.1e-08  Score=95.13  Aligned_cols=41  Identities=24%  Similarity=0.314  Sum_probs=38.1

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      ..+|.+|.|.||+||||||+|+.|++.+|...+++++.++.
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~   43 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQ   43 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHH
Confidence            46789999999999999999999999999999999998864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.57  E-value=1.3e-08  Score=97.64  Aligned_cols=32  Identities=25%  Similarity=0.562  Sum_probs=30.0

Q ss_pred             eeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460          522 IGGPSGSGKTSLAHKMANIVGCEVVSLESYFK  553 (818)
Q Consensus       522 IsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~  553 (818)
                      +.|++||||||+|+.|++.||+.+++.|++..
T Consensus         7 l~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie   38 (170)
T d1e6ca_           7 MVGARGCGMTTVGRELARALGYEFVDTDIFMQ   38 (170)
T ss_dssp             EESCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHhCCCEEehhhhhh
Confidence            57999999999999999999999999999864

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.55  E-value=3.3e-08  Score=94.18  Aligned_cols=36  Identities=25%  Similarity=0.532  Sum_probs=31.6

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK  553 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~  553 (818)
                      |.||.+ |++||||||+++.|++.||..++++|++..
T Consensus         2 p~Ivli-G~~G~GKSTig~~La~~l~~~fiD~D~~ie   37 (165)
T d2iyva1           2 PKAVLV-GLPGSGKSTIGRRLAKALGVGLLDTDVAIE   37 (165)
T ss_dssp             CSEEEE-CSTTSSHHHHHHHHHHHHTCCEEEHHHHHH
T ss_pred             CcEEEE-CCCCCCHHHHHHHHHHHhCCCeEeeccchh
Confidence            556644 999999999999999999999999998764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=5.3e-08  Score=95.22  Aligned_cols=124  Identities=15%  Similarity=0.034  Sum_probs=70.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR  139 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~  139 (818)
                      +...+|.|.||+||||||+|+.|++.+|+.+|+++++++.......  +.....+.....   .+....-..........
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~--~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~   80 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAG--SQYGELIKNCIK---EGQIVPQEITLALLRNA   80 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTT--CSCHHHHHHHHH---TTCCCCHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcc--cHHHHHHHHhhh---ccccccchhHHHHHHHH
Confidence            4567899999999999999999999999999999998763221111  111111111111   11110000000000000


Q ss_pred             ccccccccCCccEEEEEecccch------hhhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          140 IGSKVIKGASSGVVIVDGTYALD------ARLRSLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       140 ~~~~~~~~~~~~vVIvEG~~l~~------~~l~~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                      ...  ........++++|.-...      .......|..++++++.++.+.|...|.
T Consensus        81 ~~~--~~~~~~~~~vl~g~p~~~~q~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~  135 (196)
T d1ukza_          81 ISD--NVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERG  135 (196)
T ss_dssp             HHH--HHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHH
T ss_pred             HHh--hhccCCCceeeeccchhHHHHHHHHHhccccceeeccCCCHHHHHHHHHhcc
Confidence            000  001223467778765432      1222456899999999999999876654

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.54  E-value=1.3e-07  Score=89.34  Aligned_cols=140  Identities=12%  Similarity=0.097  Sum_probs=76.8

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcc-c-CCCcccccHHHHHHHHHHHhcCCceecccccccccc
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDF-K-YDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA  597 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~-~-~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~  597 (818)
                      |.|+|++||||||+|+.|++.+|..++++|+.......... . ...........+.+.+.........           
T Consensus         7 I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------   75 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGGV-----------   75 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHTTCBCCCCSSSSCCCBCHHHHHHHHHHHHHHCCE-----------
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHhccccchhHHhhhhhHHHHHHHHHhhhhhhcCCc-----------
Confidence            55899999999999999999999999999998775332211 1 1122334455555544432211110           


Q ss_pred             cCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcchhhhhccc
Q 003460          598 RSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEP  677 (818)
Q Consensus       598 r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p  677 (818)
                                      .+.+...-. ......+..+|++++.+..+.|...|+.....  .............+......
T Consensus        76 ----------------~~~~~~~~~-~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~--~~~~~~~~~~~~~~~e~~~~  136 (173)
T d1rkba_          76 ----------------IVDYHGCDF-FPERWFHIVFVLRTDTNVLYERLETRGYNEKK--LTDNIQCEIFQVLYEEATAS  136 (173)
T ss_dssp             ----------------EEECSCCTT-SCGGGCSEEEEEECCHHHHHHHHHHTTCCHHH--HHHHHHHHHTTHHHHHHHHH
T ss_pred             ----------------ccchhHHHH-HHHhcCCCcceecCCHHHHHHHHHhcCCCccc--ccccchhhhHHHHHHHHHHH
Confidence                            001111000 01223567899999999999998887633210  00111222222333333333


Q ss_pred             cCCcccEEEeCC
Q 003460          678 HLVHAHLKIRND  689 (818)
Q Consensus       678 ~~~~ADivI~n~  689 (818)
                      +...+++++++.
T Consensus       137 ~~~~~~i~~~~~  148 (173)
T d1rkba_         137 YKEEIVHQLPSN  148 (173)
T ss_dssp             SCGGGEEEEECS
T ss_pred             hhhccEEEECCC
Confidence            445677777764

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.53  E-value=2.7e-07  Score=87.20  Aligned_cols=37  Identities=14%  Similarity=0.326  Sum_probs=30.0

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccc--cccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVS--LESYFK  553 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis--~Ddfy~  553 (818)
                      +.+|.|+|++||||||+|+.|++.++...++  .|.|+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~   41 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE   41 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhc
Confidence            4588899999999999999999999876655  444443

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=5.1e-08  Score=93.94  Aligned_cols=117  Identities=15%  Similarity=0.028  Sum_probs=66.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK  143 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~  143 (818)
                      .|.|.||+||||||+|+.|++.+|+.+|+++++.+.......+..-.   +...+.   .+..+.-.........+.   
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~---i~~~~~---~g~~~~d~~v~~~~~~~~---   72 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQ---AKDIMD---AGKLVTDELVIALVKERI---   72 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGG---GHHHHH---HTCCCCHHHHHHHHHHHH---
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHH---HHHHHH---cCCCCcchhHHHHHHHhh---
Confidence            47789999999999999999999999999999876432221111111   111111   111110000000000110   


Q ss_pred             ccccCCccEEEEEecccch------hhhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          144 VIKGASSGVVIVDGTYALD------ARLRSLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       144 ~~~~~~~~vVIvEG~~l~~------~~l~~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                       .......-+|++|.---.      .......|++||++++.++...|...|+
T Consensus        73 -~~~~~~~g~i~~g~pr~~~~~~~~~~~~~~~~~vi~L~~~~~~l~~R~~~~~  124 (179)
T d1e4va1          73 -AQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVKDD  124 (179)
T ss_dssp             -TSGGGGGCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTC
T ss_pred             -cccccccceeecccccchHHhhhhhhccCCceEEEEeccchhhhhhhhcccc
Confidence             001112246677654322      1222346899999999999999988776

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=1e-07  Score=90.29  Aligned_cols=42  Identities=21%  Similarity=0.210  Sum_probs=37.3

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE  555 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~  555 (818)
                      +..+.||.|.|++||||||+|+.|++.+++..++.|++....
T Consensus         3 ~~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~   44 (171)
T d1knqa_           3 NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR   44 (171)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHH
Confidence            346778889999999999999999999999999999987653

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.51  E-value=1.1e-07  Score=90.36  Aligned_cols=114  Identities=16%  Similarity=0.131  Sum_probs=62.7

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccc--cccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVS--LESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE  594 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis--~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~  594 (818)
                      ..+|.|+|++||||||+|+.|++.+|..+++  .|++...-.........+...  +.....+.....           .
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----------~   70 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSH--QQNRMIMQIAAD-----------V   70 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHH--HHHHHHHHHHHH-----------H
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCcccccchhh--hHHHHHHHHHHH-----------H
Confidence            5689999999999999999999999877654  566543211111000011111  111111111000           0


Q ss_pred             ccccCCCcceeeecCCcEEEEEecccch--Hhhhh--cCCEEEEEEcChhHHHHHHHhcCc
Q 003460          595 TGARSGFKELEVSEDCGVIIFEGVYALH--PEIRK--SLDLWIAVVGGVHSHLISRVQRDK  651 (818)
Q Consensus       595 ~~~r~~~~~~~~~~~~~vvIvEG~~~~~--~~l~~--~~D~~I~v~~~~d~rl~Rri~Rd~  651 (818)
                      .        .........+|++|.+...  ..+..  .....+|++++.+.++.|...|..
T Consensus        71 ~--------~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~  123 (176)
T d1zp6a1          71 A--------GRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGG  123 (176)
T ss_dssp             H--------HHHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCT
T ss_pred             H--------HHHHhcCCCeEecccccHHHHHHHHhcccccccccCCCCHHHHHHHHHhCCC
Confidence            0        0001123456777766432  22222  234678999999999999887753

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.48  E-value=9.9e-08  Score=91.09  Aligned_cols=36  Identities=17%  Similarity=0.237  Sum_probs=30.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceec
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV   98 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~   98 (818)
                      ++|+|+|++||||||+++.|++.|+     +.+++.+++..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~   42 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMF   42 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhH
Confidence            5899999999999999999999884     56677777533

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.43  E-value=2.3e-07  Score=89.36  Aligned_cols=118  Identities=19%  Similarity=0.104  Sum_probs=67.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK  143 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~  143 (818)
                      .|.|.||+||||||+|+.|++.+|+.+|+++++.+.......+  .. ..+...   +..+..+............    
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~--~~-~~i~~~---~~~~~~~~~~~~~~~l~~~----   71 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTK--LG-VEAKRY---LDAGDLVPSDLTNELVDDR----   71 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCH--HH-HHHHHH---HHHTCCCCHHHHHHHHHHH----
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhh--hH-HHHHHH---HHhhhhhhhHHHHHHHHHH----
Confidence            5888999999999999999999999999999975532211111  00 011111   1122221111111111111    


Q ss_pred             ccccCCccEEEEEecccchh---hh-------hcCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460          144 VIKGASSGVVIVDGTYALDA---RL-------RSLLDIRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       144 ~~~~~~~~vVIvEG~~l~~~---~l-------~~~~D~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                      .........++++|......   .+       .-..|++++++++.+....|...|..
T Consensus        72 ~~~~~~~~~~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~r  129 (181)
T d2cdna1          72 LNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGR  129 (181)
T ss_dssp             TTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCC
T ss_pred             hhCccccccEEecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhccccc
Confidence            11111223567777654431   11       12468999999999999998887764

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.40  E-value=1.7e-07  Score=91.46  Aligned_cols=118  Identities=12%  Similarity=0.056  Sum_probs=66.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKN  138 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~  138 (818)
                      .+++.|.|.|++||||||+|+.||+.+|+.+|+++++.+........       ....+.. +..+..+.-.........
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~l~~~   76 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTE-------IGVLAKTFIDQGKLIPDDVMTRLVLH   76 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCH-------HHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhh-------hhHHHHHHhhhhhhccchhhhhhhhh
Confidence            45677888999999999999999999999999999987632221110       0111111 112211110001111111


Q ss_pred             cccccccccCCccEEEEEecccch---hhhhc--CCCEEEEEEcCHHHHHHHHHHh
Q 003460          139 RIGSKVIKGASSGVVIVDGTYALD---ARLRS--LLDIRVAVVGGVHFSLISKVQY  189 (818)
Q Consensus       139 ~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~--~~D~~I~Vda~~e~~l~Rri~R  189 (818)
                      ..     ......-+|++|.---.   ..+..  -.+.+|+++++.+....|...|
T Consensus        77 ~~-----~~~~~~~~ildGfPr~~~q~~~l~~~~~~~~vi~L~v~~~~l~~R~~~r  127 (189)
T d2ak3a1          77 EL-----KNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTDR  127 (189)
T ss_dssp             HH-----HHHTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHTGS
T ss_pred             hh-----hhhhhcCcccccccchhhHHHHhhhcCcceEEEEEeccchhhhhhcccc
Confidence            11     01112336788865433   22222  2478999999999887776443

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.38  E-value=4.5e-07  Score=85.81  Aligned_cols=40  Identities=25%  Similarity=0.344  Sum_probs=32.3

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhC-Ccccccccccc
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-CEVVSLESYFK  553 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg-~~vis~Ddfy~  553 (818)
                      ++++..|.|+|++||||||+|+.|++.++ ..+++.|++..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~   42 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVK   42 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHH
Confidence            35678899999999999999999999996 45666565544

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=1.1e-08  Score=95.43  Aligned_cols=35  Identities=20%  Similarity=0.387  Sum_probs=32.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV   98 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~   98 (818)
                      .|.|+|++||||||+|+.||+.||++++++|..+.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~   38 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIE   38 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHH
Confidence            48888999999999999999999999999998754

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=98.37  E-value=2.7e-07  Score=89.59  Aligned_cols=129  Identities=17%  Similarity=0.128  Sum_probs=72.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhcc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNR  139 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~~  139 (818)
                      ++.+| |.||+||||||+|+.||+.+|..+|+++++.+........       ....+.. +..|..+....+.......
T Consensus         3 ~~rii-l~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~~~~~~~-------~g~~~~~~~~~g~~~~~~~v~~~~~~~   74 (190)
T d1ak2a1           3 GVRAV-LLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSE-------LGKKLKATMDAGKLVSDEMVLELIEKN   74 (190)
T ss_dssp             CCEEE-EECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCH-------HHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             ccEEE-EECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCc-------ccchhhhhhccCCccccceeeeeehhh
Confidence            44444 7899999999999999999999999999886632111110       1111111 1122222111111111111


Q ss_pred             ccccccccCCccEEEEEecccch-------h---hhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHH
Q 003460          140 IGSKVIKGASSGVVIVDGTYALD-------A---RLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLI  201 (818)
Q Consensus       140 ~~~~~~~~~~~~vVIvEG~~l~~-------~---~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~  201 (818)
                      ..    ......-+|++|.-.-.       .   ......++.++++++.+....|...|........+.+.
T Consensus        75 l~----~~~~~~g~ii~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~~~d~~~e~i~  142 (190)
T d1ak2a1          75 LE----TPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHSDDNKKALK  142 (190)
T ss_dssp             HT----SGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECCCCCHHHHH
T ss_pred             hc----cccccCceeecccccchhHHHHHHHHhhhccccccccccccchHHHHHhhhccCCCCCchhhHHHH
Confidence            11    11112346777753221       1   12234578999999999999998888654444444433

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.36  E-value=2.8e-07  Score=88.25  Aligned_cols=37  Identities=16%  Similarity=0.371  Sum_probs=30.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceec
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV   98 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~   98 (818)
                      |++|.|+|++||||||+++.|++.|+     +.+++.++.++
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~   42 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFML   42 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcch
Confidence            67899999999999999999999884     34566666543

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.34  E-value=2.7e-07  Score=88.73  Aligned_cols=96  Identities=13%  Similarity=0.095  Sum_probs=66.0

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN  138 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~  138 (818)
                      .+.|.+|.++|++||||||+|+.|+..+|+.+|+.|++..            ...+.+.+....                
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~~------------~~~~~~~~~~~l----------------   62 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGS------------WQRCVSSCQAAL----------------   62 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHCS------------HHHHHHHHHHHH----------------
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHHH------------HHHHHHHHHHHH----------------
Confidence            3567899999999999999999999989999999998743            112222222110                


Q ss_pred             cccccccccCCccEEEEEecccchh---hhhcC-----CC-EEEEEEcCHHHHHHHHHHhcc
Q 003460          139 RIGSKVIKGASSGVVIVDGTYALDA---RLRSL-----LD-IRVAVVGGVHFSLISKVQYDI  191 (818)
Q Consensus       139 ~~~~~~~~~~~~~vVIvEG~~l~~~---~l~~~-----~D-~~I~Vda~~e~~l~Rri~Rd~  191 (818)
                               .....||+|+.+....   .+..+     +. ..+|+++|.+++.+|...|..
T Consensus        63 ---------~~g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~R~~  115 (172)
T d1yj5a2          63 ---------RQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREM  115 (172)
T ss_dssp             ---------HTTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred             ---------HCCCCceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHhcc
Confidence                     1123477888776542   22111     12 468999999999999888864

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.34  E-value=2.5e-07  Score=87.03  Aligned_cols=36  Identities=19%  Similarity=0.311  Sum_probs=30.3

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCc-ccccccccc
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCE-VVSLESYFK  553 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~-vis~Ddfy~  553 (818)
                      .+|.|+|++||||||+|+.|++.++.. +++.|+++.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~   39 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINH   39 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHH
Confidence            478899999999999999999999754 567777654

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.33  E-value=2.7e-07  Score=85.68  Aligned_cols=37  Identities=27%  Similarity=0.319  Sum_probs=30.9

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh-CCcccccccccch
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKS  554 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l-g~~vis~Ddfy~~  554 (818)
                      .+|.|+|++||||||+|+.|.+.. ++.+++.|++...
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~   40 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQS   40 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHH
Confidence            467799999999999999987654 6889999988654

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.32  E-value=4e-07  Score=90.38  Aligned_cols=44  Identities=27%  Similarity=0.390  Sum_probs=35.7

Q ss_pred             hcCCcEEEEEeCCCCCcHHHHHHHHHHHh----C--CeEEeccceecccc
Q 003460           58 KKGGIVTVGIGGPSGSGKTSLAEKLASVI----G--CTLISMENYRVGVD  101 (818)
Q Consensus        58 ~~~~~~iIgI~G~sGSGKSTlA~~La~~L----g--~~vI~~D~~~~~~~  101 (818)
                      +..++++|-++|.|||||||+|+.|++.+    +  +.+++.|.+...+.
T Consensus        20 ~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l~   69 (208)
T d1m7ga_          20 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLN   69 (208)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTT
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhhc
Confidence            44677899999999999999999998766    3  45688888876553

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=5.1e-07  Score=87.64  Aligned_cols=125  Identities=14%  Similarity=0.151  Sum_probs=70.7

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETG  596 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~  596 (818)
                      |++|.|.||+||||||.|+.|++.+|..+|++++.++......   ..+   ....   ....+.+|..+.-........
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~~---~~~---~~~~---~~~~~~~~~~v~d~~~~~~~~   71 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNP---DSQ---YGEL---IEKYIKEGKIVPVEITISLLK   71 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCT---TST---THHH---HHHHHHTTCCCCHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHhh---hhh---HHHH---HHHHHhcCCccccchhhHHHH
Confidence            7899999999999999999999999999999999987532111   011   1111   112223333221111100000


Q ss_pred             ccCCCcceeeecCCcEEEEEecccchH---hhh------hcCCEEEEEEcChhHHHHHHHhcCc
Q 003460          597 ARSGFKELEVSEDCGVIIFEGVYALHP---EIR------KSLDLWIAVVGGVHSHLISRVQRDK  651 (818)
Q Consensus       597 ~r~~~~~~~~~~~~~vvIvEG~~~~~~---~l~------~~~D~~I~v~~~~d~rl~Rri~Rd~  651 (818)
                      .+.. ..........-++++|.-.-..   .+.      ...|..++++++.+..+.|...|..
T Consensus        72 ~~~~-~~~~~~~~~~~~~~~g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~  134 (194)
T d1teva_          72 REMD-QTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK  134 (194)
T ss_dssp             HHHH-HHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             Hhhc-ccchhhhcccceeeccchhhHHHHHHHhhhhhccccccEEEeecCcchhheeecccCCC
Confidence            0000 0000011234567777654321   111      1236788999999999998888753

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.25  E-value=1.2e-06  Score=85.23  Aligned_cols=124  Identities=14%  Similarity=0.069  Sum_probs=68.8

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE  594 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~  594 (818)
                      +...+|.|.||+||||||+|+.|++.+|...||++|+++......      ++.....+...   ...|....--.....
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~------~~~~~~~i~~~---~~~~~~~~~~~~~~~   76 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRA------GSQYGELIKNC---IKEGQIVPQEITLAL   76 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHST------TCSCHHHHHHH---HHTTCCCCHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhc------ccHHHHHHHHh---hhccccccchhHHHH
Confidence            345678889999999999999999999999999999986421110      00001111111   111111000000000


Q ss_pred             ccccCCCcceeeecCCcEEEEEecccchH---hh---hhcCCEEEEEEcChhHHHHHHHhcC
Q 003460          595 TGARSGFKELEVSEDCGVIIFEGVYALHP---EI---RKSLDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       595 ~~~r~~~~~~~~~~~~~vvIvEG~~~~~~---~l---~~~~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                      ...+.   ..........++++|.-....   .+   ....+..++++++.++.+.|...|.
T Consensus        77 ~~~~~---~~~~~~~~~~~vl~g~p~~~~q~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~  135 (196)
T d1ukza_          77 LRNAI---SDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERG  135 (196)
T ss_dssp             HHHHH---HHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHH
T ss_pred             HHHHH---HhhhccCCCceeeeccchhHHHHHHHHHhccccceeeccCCCHHHHHHHHHhcc
Confidence            00000   000011235677787765421   12   2346899999999999999877654

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.25  E-value=2.8e-07  Score=89.47  Aligned_cols=39  Identities=21%  Similarity=0.254  Sum_probs=35.7

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      .|..|.|.||+||||||+|+.|++.+|...+++|++...
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~   40 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRA   40 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHH
Confidence            477788999999999999999999999999999988775

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.25  E-value=3.9e-07  Score=87.28  Aligned_cols=35  Identities=29%  Similarity=0.356  Sum_probs=32.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV   98 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~   98 (818)
                      .|.|.||+||||||+|+.||+.+|..+|+++++.+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~   36 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFR   36 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceechhHHHH
Confidence            47899999999999999999999999999999866

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.22  E-value=8.5e-07  Score=83.78  Aligned_cols=41  Identities=15%  Similarity=0.071  Sum_probs=34.2

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      ..+.++|.|+|+|||||||+|+.|++.|+...+..+.+...
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~~~~~~   43 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG   43 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCchhhhhh
Confidence            45679999999999999999999999998766666655554

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.22  E-value=7.5e-07  Score=85.73  Aligned_cols=117  Identities=14%  Similarity=0.102  Sum_probs=64.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhh-hcCCccccccchhhhhccccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKNRIGS  142 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l-~~~~~i~~p~~d~~~~~~~~~  142 (818)
                      .|.|.||+||||||+|+.|++.+|...|+++++.+........       +-..+... ..+..+...........+...
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~-------~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~   76 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQ-------LGLEAKKIMDQGGLVSDDIMVNMIKDELTN   76 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCH-------HHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCCh-------HHHHHHHHHhhhcccccchhHHHHHHHHhc
Confidence            3557799999999999999999999999999976532221111       11111111 112111110100011111100


Q ss_pred             cccccCCccEEEEEecccchh----------hhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          143 KVIKGASSGVVIVDGTYALDA----------RLRSLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       143 ~~~~~~~~~vVIvEG~~l~~~----------~l~~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                      ..   ....-+|++|......          ....-.|++|+++++.+...+|...|+
T Consensus        77 ~~---~~~~g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~~  131 (180)
T d1akya1          77 NP---ACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNAD  131 (180)
T ss_dssp             CG---GGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSHH
T ss_pred             Cc---cccCCEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhcccccc
Confidence            00   0112367777653321          111236899999999999888876554

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=3.3e-06  Score=84.53  Aligned_cols=49  Identities=6%  Similarity=-0.073  Sum_probs=35.3

Q ss_pred             CCCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHHHHhhchhhhhccCCcc
Q 003460          168 LLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHIEPDL  216 (818)
Q Consensus       168 ~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~~~~~p~~~~~Iep~~  216 (818)
                      ..|+.||++++++.++.|...|..... .-..+.++.+...|++++....
T Consensus       149 ~pdl~i~Ld~~~~~~~~Ri~~r~r~~E~~i~~~yl~~l~~~Y~~~~~~~~  198 (241)
T d2ocpa1         149 TLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKT  198 (241)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCC
T ss_pred             ccceEEEecCCHHHHHHHHhcccchhhhcCCHHHHHHHHHHHHHHHHhhh
Confidence            458999999999999999988886443 2223456666777777765444

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.16  E-value=1.8e-06  Score=83.91  Aligned_cols=122  Identities=16%  Similarity=0.079  Sum_probs=70.8

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhh
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQK  137 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~  137 (818)
                      ..++.+|.|.||+||||||+|+.|++.+|..+|+++++.+........       +...+.. +..+..+.-........
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~   77 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSA-------RGKMLSEIMEKGQLVPLETVLDMLR   77 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCH-------HHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHh-------hhhhhHHHHhhccCCchheeeeehh
Confidence            345688999999999999999999999999999999986643221111       1111111 12222211111111111


Q ss_pred             ccccccccccCCccEEEEEecccch------hhhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460          138 NRIGSKVIKGASSGVVIVDGTYALD------ARLRSLLDIRVAVVGGVHFSLISKVQYD  190 (818)
Q Consensus       138 ~~~~~~~~~~~~~~vVIvEG~~l~~------~~l~~~~D~~I~Vda~~e~~l~Rri~Rd  190 (818)
                      .+...   .......+|++|.---.      .......+..++++++.+....|...|.
T Consensus        78 ~~l~~---~~~~~~g~ildg~pr~~~qa~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  133 (194)
T d3adka_          78 DAMVA---KVDTSKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMTKRLLKRG  133 (194)
T ss_dssp             HHHHT---TTTTCSCEEEESCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHH
T ss_pred             hhhhh---cccccccceeeeccchhHHHHHHHHHhCCccchhccccchhhhHhHhhhhc
Confidence            11100   11123357778875432      1222345789999999999988876654

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.13  E-value=2.9e-06  Score=82.52  Aligned_cols=40  Identities=18%  Similarity=0.282  Sum_probs=35.7

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      .+.+-|.|.||+||||||+|+.|++.+|...||++|+++.
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~   43 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRD   43 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHH
Confidence            3455677889999999999999999999999999999975

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=1.9e-07  Score=86.84  Aligned_cols=35  Identities=20%  Similarity=0.429  Sum_probs=31.4

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      |.|+|++||||||+|+.|++.||+.++++|+.+..
T Consensus         5 I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~   39 (169)
T d1kaga_           5 IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEK   39 (169)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHh
Confidence            56679999999999999999999999998887654

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=1.3e-06  Score=83.89  Aligned_cols=40  Identities=20%  Similarity=0.207  Sum_probs=35.3

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK  553 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~  553 (818)
                      ...|.+|.++|++||||||+|+.|+..+++.+++.|++..
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~~   50 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGS   50 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHCS
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHHH
Confidence            3568899999999999999999999888999999998754

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=98.12  E-value=1.2e-06  Score=84.24  Aligned_cols=35  Identities=23%  Similarity=0.335  Sum_probs=32.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV   98 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~   98 (818)
                      .|.|.|++||||||+|+.||+.+|..+|+++++.+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr   36 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFR   36 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHH
Confidence            47799999999999999999999999999999765

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.11  E-value=2.2e-06  Score=82.54  Aligned_cols=25  Identities=32%  Similarity=0.448  Sum_probs=22.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      .+|.|+|||||||||+++.|.+.+.
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4678999999999999999988763

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=2.8e-06  Score=81.30  Aligned_cols=37  Identities=16%  Similarity=0.190  Sum_probs=33.6

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE  555 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~  555 (818)
                      .|.|.||+||||||.|+.|++.+|+..++++++++..
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~   38 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAA   38 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHh
Confidence            3668899999999999999999999999999998763

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=7.3e-07  Score=87.88  Aligned_cols=37  Identities=27%  Similarity=0.424  Sum_probs=35.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecc
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG   99 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~   99 (818)
                      ++|+|.||+||||||+|+.|++.+|..+||+.+++|.
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~   40 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRV   40 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHH
Confidence            5899999999999999999999999999999999884

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.6e-06  Score=83.45  Aligned_cols=36  Identities=31%  Similarity=0.347  Sum_probs=29.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY   96 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~   96 (818)
                      +..+|.++|+|||||||+|+.|++.++...++++.+
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~   53 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL   53 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccch
Confidence            357899999999999999999999997555444443

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.03  E-value=3.1e-06  Score=81.17  Aligned_cols=117  Identities=17%  Similarity=0.166  Sum_probs=66.1

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR  598 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r  598 (818)
                      -|.|.||+||||||+|+.|++.+|+.++++++....+....    .+      .....-..+.+|..+...........+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~----~~------~~~~i~~~~~~~~~~~~~~~~~~l~~~   71 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEG----TK------LGVEAKRYLDAGDLVPSDLTNELVDDR   71 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTT----CH------HHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhh----hh------hHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence            36788999999999999999999999999999876521110    00      000111111222222111111111111


Q ss_pred             CCCcceeeecCCcEEEEEecccchHh---hh-------hcCCEEEEEEcChhHHHHHHHhcC
Q 003460          599 SGFKELEVSEDCGVIIFEGVYALHPE---IR-------KSLDLWIAVVGGVHSHLISRVQRD  650 (818)
Q Consensus       599 ~~~~~~~~~~~~~vvIvEG~~~~~~~---l~-------~~~D~~I~v~~~~d~rl~Rri~Rd  650 (818)
                      ..    . ......++++|.-.-...   +.       -..|+.++++++.+....|...|.
T Consensus        72 ~~----~-~~~~~~~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~  128 (181)
T d2cdna1          72 LN----N-PDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG  128 (181)
T ss_dssp             TT----S-GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC
T ss_pred             hh----C-ccccccEEecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhcccc
Confidence            10    0 112245677776654311   11       135789999999999888887764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.00  E-value=8.8e-07  Score=87.64  Aligned_cols=39  Identities=23%  Similarity=0.487  Sum_probs=36.7

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      ++++|+|.||+||||||.|+.|++.||..+||..++|+.
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~   40 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRA   40 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHH
Confidence            357899999999999999999999999999999999996

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.00  E-value=4.6e-06  Score=79.45  Aligned_cols=37  Identities=19%  Similarity=0.381  Sum_probs=29.4

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccch
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKS  554 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~  554 (818)
                      .+|.|+|++||||||+++.|++.|+     +.+++.+|++..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~   43 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLA   43 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchH
Confidence            5788999999999999999999885     334565666554

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.99  E-value=7.7e-06  Score=79.04  Aligned_cols=23  Identities=43%  Similarity=0.686  Sum_probs=21.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q 003460           65 VGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        65 IgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      |.|+||||||||||++.|++.+.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            77999999999999999988764

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.94  E-value=9.1e-06  Score=78.38  Aligned_cols=38  Identities=24%  Similarity=0.277  Sum_probs=33.5

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      ...|| |.||+||||||+|+.|++.+|..+|+++|.++.
T Consensus         3 ~~rii-l~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~   40 (190)
T d1ak2a1           3 GVRAV-LLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRA   40 (190)
T ss_dssp             CCEEE-EECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred             ccEEE-EECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHH
Confidence            34555 679999999999999999999999999999874

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=1.3e-06  Score=85.92  Aligned_cols=37  Identities=27%  Similarity=0.557  Sum_probs=35.3

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      .||+|.||+||||||.|+.|++.+|.+.||+.|+|+.
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~   40 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRV   40 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHH
Confidence            4899999999999999999999999999999999985

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.93  E-value=9.7e-06  Score=78.57  Aligned_cols=39  Identities=23%  Similarity=0.322  Sum_probs=36.2

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      ++.+|.|.||+||||||+|+.|++.+|..+|++++.++.
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~   45 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRA   45 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHH
Confidence            567888999999999999999999999999999999875

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=2.7e-05  Score=77.68  Aligned_cols=51  Identities=10%  Similarity=0.002  Sum_probs=36.6

Q ss_pred             cCCEEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcchhhhhccccCC
Q 003460          628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLV  680 (818)
Q Consensus       628 ~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p~~~  680 (818)
                      ..|+.||++++.+.++.|...|.....  ......|...+...|+.|+.....
T Consensus       149 ~pdl~i~Ld~~~~~~~~Ri~~r~r~~E--~~i~~~yl~~l~~~Y~~~~~~~~~  199 (241)
T d2ocpa1         149 TLHGFIYLQASPQVCLKRLYQRAREEE--KGIELAYLEQLHGQHEAWLIHKTT  199 (241)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHSCCTTT--TTCCHHHHHHHHHHHHHHHTSCCS
T ss_pred             ccceEEEecCCHHHHHHHHhcccchhh--hcCCHHHHHHHHHHHHHHHHhhhh
Confidence            358999999999999999988763221  111246777888888888776543

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=1.6e-05  Score=77.15  Aligned_cols=23  Identities=43%  Similarity=0.661  Sum_probs=21.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q 003460           65 VGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        65 IgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      |.|+|||||||||+++.|++.++
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            67999999999999999998875

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.88  E-value=1.1e-05  Score=76.92  Aligned_cols=35  Identities=26%  Similarity=0.406  Sum_probs=32.9

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      |.|.||+||||||+|+.|++.+|...++++++++.
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~   37 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRA   37 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCceechhHHHHH
Confidence            66899999999999999999999999999998875

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.86  E-value=1.3e-05  Score=76.70  Aligned_cols=35  Identities=20%  Similarity=0.343  Sum_probs=31.9

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      |.|.||+||||||+|+.|++.+|...|+++++...
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~   39 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRS   39 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceEecccccee
Confidence            44779999999999999999999999999998764

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.85  E-value=4.6e-06  Score=78.77  Aligned_cols=36  Identities=36%  Similarity=0.248  Sum_probs=32.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY   96 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~   96 (818)
                      -++.|+|+|++||||||+|+.|++.+|.++++.+..
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~   41 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGR   41 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehH
Confidence            357899999999999999999999999999987764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.82  E-value=3.2e-06  Score=84.85  Aligned_cols=37  Identities=16%  Similarity=0.136  Sum_probs=33.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEe-ccceec
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLIS-MENYRV   98 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~-~D~~~~   98 (818)
                      |.+|||+|+.||||||+|+.|++.+|+.+++ .|.+.+
T Consensus         1 M~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i~~   38 (241)
T d1deka_           1 MKLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKD   38 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHHHH
Confidence            6899999999999999999999999999999 565544

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.82  E-value=2.9e-06  Score=79.98  Aligned_cols=38  Identities=18%  Similarity=0.073  Sum_probs=30.6

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY   96 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~   96 (818)
                      ..+.++|.|+|+|||||||+|+.|++.|+...++.+.+
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~~~   40 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSL   40 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCchhh
Confidence            45679999999999999999999999997544444433

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.81  E-value=1.4e-05  Score=78.89  Aligned_cols=39  Identities=18%  Similarity=0.219  Sum_probs=31.1

Q ss_pred             cCCCCEEEeeeCCCCccHHHHHHHHHHHh----C--Ccccccccc
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV----G--CEVVSLESY  551 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~l----g--~~vis~Ddf  551 (818)
                      +.+++.+|-++|.|||||||+|+.|+..+    +  +.+++.|++
T Consensus        20 ~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i   64 (208)
T d1m7ga_          20 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   64 (208)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence            45678999999999999999999999766    3  334666655

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.80  E-value=1.8e-05  Score=75.67  Aligned_cols=36  Identities=22%  Similarity=0.381  Sum_probs=33.1

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      .|.|.||+||||||+|+.|++.+|...++++|+.+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~   37 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRA   37 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHH
Confidence            467899999999999999999999999999998875

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=2.7e-05  Score=77.29  Aligned_cols=31  Identities=19%  Similarity=0.266  Sum_probs=26.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEE
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLI   91 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI   91 (818)
                      ++++|+|.|+.||||||+++.|++.|...-+
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~~~~~   31 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCEDWEV   31 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHhcCCC
Confidence            4689999999999999999999998864333

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.71  E-value=8.7e-06  Score=76.75  Aligned_cols=37  Identities=24%  Similarity=0.209  Sum_probs=32.8

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF  552 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy  552 (818)
                      -+..|+|+|++||||||+|++|++.+|..+++.|...
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~~   42 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGRE   42 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehHH
Confidence            4678999999999999999999999999888877644

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=6.3e-05  Score=73.85  Aligned_cols=24  Identities=33%  Similarity=0.468  Sum_probs=21.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .+|.|+||||||||||.+.|.+..
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            467899999999999999998865

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.59  E-value=9.5e-05  Score=70.57  Aligned_cols=24  Identities=25%  Similarity=0.515  Sum_probs=21.3

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhC
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      +|.|+|||||||||+++.|.+.+.
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHST
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCC
Confidence            566999999999999999998764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.00014  Score=71.38  Aligned_cols=32  Identities=19%  Similarity=0.278  Sum_probs=26.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh---CCeEEec
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI---GCTLISM   93 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L---g~~vI~~   93 (818)
                      ..+|+|.|+.||||||+++.|++.|   |..++.+
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~   37 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL   37 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            3679999999999999999999987   5556544

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=9.3e-06  Score=77.85  Aligned_cols=39  Identities=21%  Similarity=0.272  Sum_probs=33.2

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS  554 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~  554 (818)
                      +..+|.++|+|||||||+|+.|+..++...+++|.+...
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d   56 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD   56 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHH
Confidence            568999999999999999999999998777777666543

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=0.00014  Score=71.01  Aligned_cols=45  Identities=7%  Similarity=-0.122  Sum_probs=30.8

Q ss_pred             CCCEEEEEEcCHHHHHHHHHHhccCCC--cCHHHHHHhhchhhhhcc
Q 003460          168 LLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDSIFPLFRKHI  212 (818)
Q Consensus       168 ~~D~~I~Vda~~e~~l~Rri~Rd~~~~--~s~e~~~~~~~p~~~~~I  212 (818)
                      ..|+.||++++++++.+|...|....+  ....+..+++...|.++.
T Consensus       131 ~pdl~i~Ld~~~e~~~~Ri~~R~~~~~~~~~~~~~~~~v~~~y~~~~  177 (210)
T d4tmka_         131 RPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRARYLELA  177 (210)
T ss_dssp             CCSEEEEEECCHHHHHHHHHHHSSCCTTTTSCHHHHHHHHHHHHHHH
T ss_pred             CCceEEEecchHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHH
Confidence            469999999999999999999875443  222344444445555433

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.49  E-value=1.8e-05  Score=76.71  Aligned_cols=38  Identities=21%  Similarity=0.316  Sum_probs=33.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceecc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVG   99 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~   99 (818)
                      |.+|.++|.+||||||+|++|++.++     +.+++.|.++..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~   44 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRD   44 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehh
Confidence            68999999999999999999998774     568999987654

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.48  E-value=5.7e-05  Score=72.67  Aligned_cols=23  Identities=39%  Similarity=0.622  Sum_probs=20.3

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhC
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      |.|+|||||||||+++.|.+.+.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            45799999999999999998764

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.47  E-value=0.00024  Score=68.51  Aligned_cols=23  Identities=39%  Similarity=0.634  Sum_probs=20.5

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhC
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      |.|+|||||||||+++.|++.++
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            44899999999999999998875

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.47  E-value=0.00013  Score=70.64  Aligned_cols=61  Identities=8%  Similarity=-0.022  Sum_probs=36.9

Q ss_pred             CCEEEEEEcChhHHHHHHHhcCccccCccc---c-hhhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460          629 LDLWIAVVGGVHSHLISRVQRDKSRMGCFM---S-QNDIMMTVFPMFQQHIEPHLVHAHLKIRND  689 (818)
Q Consensus       629 ~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~---~-~~~~~~~v~p~~~~~I~p~~~~ADivI~n~  689 (818)
                      -|+.||++++.++.++|...|.....+...   + ...|...+...|.++.......--+||+.+
T Consensus       133 Pd~~i~L~~~~e~~~~Ri~~R~~~~~~~~~d~~e~~~~y~~~~~~~Y~~~~~~~~~~~~~vIDa~  197 (208)
T d1gsia_         133 PDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGAD  197 (208)
T ss_dssp             CSEEEEECCCHHHHHHHHHHHHHHCTTCCCCTTTTCHHHHHHHHHHHHHHHHHTTTSEEEEECTT
T ss_pred             CceeEEecccHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            489999999999999999888643222211   1 135666666777776432211112455644

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.43  E-value=7.1e-05  Score=72.63  Aligned_cols=29  Identities=34%  Similarity=0.639  Sum_probs=24.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHh---CCeEE
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVI---GCTLI   91 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~L---g~~vI   91 (818)
                      ++|+|.|+.||||||+++.|++.|   |..++
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~g~~v~   32 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA   32 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence            369999999999999999999977   55554

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.37  E-value=3.7e-05  Score=76.72  Aligned_cols=33  Identities=18%  Similarity=0.178  Sum_probs=30.1

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCccccccc
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES  550 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Dd  550 (818)
                      .+|||+|+.||||||+|+.|++.+|+.+++.+|
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD   34 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAG   34 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCeEEcccH
Confidence            689999999999999999999999999998543

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.34  E-value=2.1e-05  Score=74.05  Aligned_cols=34  Identities=26%  Similarity=0.310  Sum_probs=27.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMEN   95 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~   95 (818)
                      |.+|+|+|.+|||||||+..|...|   |  +.+|-.|.
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~   39 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG   39 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence            5789999999999999999998876   3  44554444

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.34  E-value=2.8e-05  Score=75.36  Aligned_cols=37  Identities=19%  Similarity=0.408  Sum_probs=31.6

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK  553 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~  553 (818)
                      |.+|.+.|.+||||||+|++|+..++     +.+++.|.+..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~   43 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRR   43 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceeh
Confidence            78999999999999999999998875     45778887644

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.23  E-value=8.6e-05  Score=74.68  Aligned_cols=41  Identities=24%  Similarity=0.360  Sum_probs=34.5

Q ss_pred             hcCCcEEEEEeCCCCCcHHHHHHHHHHHhC--CeEEeccceec
Q 003460           58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIG--CTLISMENYRV   98 (818)
Q Consensus        58 ~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg--~~vI~~D~~~~   98 (818)
                      ....|..|.+.||+||||||+|+.||..++  ...|++|.|..
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~   70 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ   70 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHH
Confidence            335578899999999999999999999885  56789888754

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00062  Score=66.49  Aligned_cols=124  Identities=13%  Similarity=0.101  Sum_probs=59.5

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh--hhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE--QVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETG  596 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~--~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~  596 (818)
                      +|.|+||||||||||.+.|.+.....-+..=--|-+.  ..++.+-.+-.-.+.+.   .-..+.+|+-++.-.|.   +
T Consensus         4 livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~---F~~~i~~g~flE~~~~~---g   77 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDE---FKEMISRDAFLEHAEVF---G   77 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHH---HHHHHHTTCEEEEEEET---T
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHH---HHHHhhhhhheeEEEEC---C
Confidence            5668999999999999999887531100000001110  01111111111122222   23344556655543332   1


Q ss_pred             ccCCC--cce-eeecCCcEEEEEecccchHhhhhcCC--EEEEEEcChhHHHHHHHh
Q 003460          597 ARSGF--KEL-EVSEDCGVIIFEGVYALHPEIRKSLD--LWIAVVGGVHSHLISRVQ  648 (818)
Q Consensus       597 ~r~~~--~~~-~~~~~~~vvIvEG~~~~~~~l~~~~D--~~I~v~~~~d~rl~Rri~  648 (818)
                      ...+.  ... .......++|+++-..+...++....  ..||+.++....+..|+.
T Consensus        78 ~~YGt~~~~v~~~~~~g~~~ildid~~g~~~lk~~~~~~~~ifi~pps~~~l~~RL~  134 (205)
T d1s96a_          78 NYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLR  134 (205)
T ss_dssp             EEEEEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHHHH
T ss_pred             ceeccccchHHHHHhcCCceeecCcHHHHHHHHhhhcccceeeeeccchHHHHHHHH
Confidence            11110  011 11245678888877766555555442  567776666555554443

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.20  E-value=0.00028  Score=73.98  Aligned_cols=124  Identities=18%  Similarity=0.235  Sum_probs=66.3

Q ss_pred             HHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceecccccCCCCCcccHHHHHHHHHhhhc
Q 003460           49 VKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTE  123 (818)
Q Consensus        49 ~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~  123 (818)
                      ...+..+..+..+..+|||+|++|||||||...|...+   |  +.||..|---. ...+.-.+  |...+    ..+..
T Consensus        38 ~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~-~~gg~llg--dr~rm----~~~~~  110 (323)
T d2qm8a1          38 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSST-RTGGSILG--DKTRM----ARLAI  110 (323)
T ss_dssp             HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGG-SSCCCSSC--CGGGS----TTGGG
T ss_pred             HHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccH-HHHhcccc--chhhH----HHHhc
Confidence            33445555666778999999999999999999998764   3  55666665322 00000000  00000    00000


Q ss_pred             CCcccccc-----chhhhhccc--cccccccCCccEEEEEecccch--hhhhcCCCEEEEEEcCH
Q 003460          124 GKDTLIPM-----FDYQQKNRI--GSKVIKGASSGVVIVDGTYALD--ARLRSLLDIRVAVVGGV  179 (818)
Q Consensus       124 ~~~i~~p~-----~d~~~~~~~--~~~~~~~~~~~vVIvEG~~l~~--~~l~~~~D~~I~Vda~~  179 (818)
                      +..+++..     .........  ..........+++++|-.....  ..+...+|..++|..+.
T Consensus       111 ~~~~~ir~~~~~~~~gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~~~~D~~v~v~~p~  175 (323)
T d2qm8a1         111 DRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG  175 (323)
T ss_dssp             CTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC
T ss_pred             ccceeeccccccccccchhHHHHHHHHhhccCCCCeEEEeehhhhhhhhhhhcccceEEEEeecc
Confidence            01111100     000000000  0112233456799999887766  56778899999999884

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.19  E-value=0.00076  Score=70.50  Aligned_cols=113  Identities=20%  Similarity=0.264  Sum_probs=64.8

Q ss_pred             HHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccccc--------hhhh--------hcccCCC
Q 003460          506 AIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFK--------SEQV--------KDFKYDD  564 (818)
Q Consensus       506 ~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddfy~--------~~~~--------~~~~~d~  564 (818)
                      .+..+....++.++|||+|++|||||||...|...+   |  +.|+..|=.-.        +...        ..+-...
T Consensus        40 ~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~  119 (323)
T d2qm8a1          40 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPS  119 (323)
T ss_dssp             HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECC
T ss_pred             HHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccc
Confidence            344555567789999999999999999999999765   2  34554442111        0000        0000111


Q ss_pred             cccccHHHHHHHHHHHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccch--HhhhhcCCEEEEEEcCh
Q 003460          565 FSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH--PEIRKSLDLWIAVVGGV  639 (818)
Q Consensus       565 p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~--~~l~~~~D~~I~v~~~~  639 (818)
                      +..-....+.........                     .......+++|+|-+-.+.  ..+....|..+++..+.
T Consensus       120 ~~~~~~gg~~~~~~~~i~---------------------~~~~~g~d~iiiETVG~gq~e~~~~~~~D~~v~v~~p~  175 (323)
T d2qm8a1         120 PSSGTLGGVAAKTRETML---------------------LCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG  175 (323)
T ss_dssp             CCCSSHHHHHHHHHHHHH---------------------HHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC
T ss_pred             cccccccchhHHHHHHHH---------------------hhccCCCCeEEEeehhhhhhhhhhhcccceEEEEeecc
Confidence            211122222222211000                     0011346899999998875  56778899999997764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=97.18  E-value=0.00019  Score=75.22  Aligned_cols=45  Identities=7%  Similarity=0.051  Sum_probs=32.8

Q ss_pred             CEEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcchhhhhccc
Q 003460          630 DLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEP  677 (818)
Q Consensus       630 D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p  677 (818)
                      |..||++++.++.+.|...|.-.  +... ...|...++..|..++..
T Consensus       156 dliIyLd~~pe~~l~RI~~RgR~--~E~i-dl~YL~~L~~~Y~~L~nT  200 (329)
T d1e2ka_         156 TNIVLGALPEDRHIDRLAKRQRP--GERL-DLAMLAAIRRVYGLLANT  200 (329)
T ss_dssp             CEEEEEECCHHHHHHHHHHSCCT--TCCC-CHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHcCCC--cCCC-CHHHHHHHHHHHHHHHhH
Confidence            89999999999999998777521  2222 246788888888776543

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=97.18  E-value=0.00015  Score=76.06  Aligned_cols=26  Identities=35%  Similarity=0.548  Sum_probs=21.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      ...|.|.|+.||||||+++.|++.++
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             ceEEEEECCcCCCHHHHHHHHHHHhC
Confidence            45699999999999999999998774

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00032  Score=68.73  Aligned_cols=31  Identities=19%  Similarity=0.397  Sum_probs=25.7

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh---CCccccc
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV---GCEVVSL  548 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l---g~~vis~  548 (818)
                      .+|.|.|+.||||||+++.|++.|   |..++.+
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~   37 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL   37 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            579999999999999999999987   4445444

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00011  Score=68.19  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=21.7

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHh
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      ||+|+|++|||||||++.|.+.+
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            79999999999999999999876

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.09  E-value=0.00012  Score=73.56  Aligned_cols=41  Identities=27%  Similarity=0.376  Sum_probs=34.4

Q ss_pred             cCCCCEEEeeeCCCCccHHHHHHHHHHHhC--Ccccccccccc
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLESYFK  553 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~lg--~~vis~Ddfy~  553 (818)
                      ..+.|..|.+.||+||||||+|+.|+..++  ...+++|+|..
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~   70 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ   70 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHH
Confidence            445788899999999999999999999985  56778888743

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00011  Score=68.13  Aligned_cols=24  Identities=33%  Similarity=0.473  Sum_probs=22.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ++|+|+|++|||||||++.|++.|
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            589999999999999999999876

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.0003  Score=69.37  Aligned_cols=48  Identities=10%  Similarity=-0.041  Sum_probs=32.0

Q ss_pred             cCCEEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcchhhhhccc
Q 003460          628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEP  677 (818)
Q Consensus       628 ~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p  677 (818)
                      ..|+.||++++++.+++|...|..... .. ....|...+...|+.|+..
T Consensus       152 ~Pdl~i~Ld~~pe~~~~Ri~~r~~~~e-~~-~~~~yl~~l~~~y~~~~~~  199 (241)
T d1p5zb_         152 ELDGIIYLQATPETCLHRIYLRGRNEE-QG-IPLEYLEKLHYKHESWLLH  199 (241)
T ss_dssp             CCSEEEEEECCHHHHHHHHHHHCCGGG-TT-CCHHHHHHHHHHHHHHHTT
T ss_pred             CCceeeeeccCHHHHHHHHHhhcchhh-hc-CCHHHHHHHHHHHHHHHHH
Confidence            468999999999999999876653211 11 1135666666677776543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.0011  Score=69.38  Aligned_cols=119  Identities=16%  Similarity=0.251  Sum_probs=63.3

Q ss_pred             HHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceecccccCCCCCcccHHHHHHH---HHhhh
Q 003460           51 SIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSIDFDALVQN---LQDLT  122 (818)
Q Consensus        51 ~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~---L~~l~  122 (818)
                      .+..+.....+..+|||+|++|||||||...|...+   |  +.++..|....-          +-.++...   +..+.
T Consensus        43 ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~----------~ggailgdr~rm~~~~  112 (327)
T d2p67a1          43 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV----------TGGSILGDKTRMNDLA  112 (327)
T ss_dssp             HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-------------------------CTTT
T ss_pred             HHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceee----------eccccccchhHHHHhc
Confidence            344444556778999999999999999999998765   3  556766653220          00000000   00000


Q ss_pred             cCCcccccc-chh----hh--hccccccccccCCccEEEEEecccch--hhhhcCCCEEEEEEcCH
Q 003460          123 EGKDTLIPM-FDY----QQ--KNRIGSKVIKGASSGVVIVDGTYALD--ARLRSLLDIRVAVVGGV  179 (818)
Q Consensus       123 ~~~~i~~p~-~d~----~~--~~~~~~~~~~~~~~~vVIvEG~~l~~--~~l~~~~D~~I~Vda~~  179 (818)
                      ....+.+.. -..    ..  ..............+++++|-.....  ..+...+|..++|..|.
T Consensus       113 ~~~~~~ir~~~~~g~lgg~~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~~i~~~aD~~l~v~~P~  178 (327)
T d2p67a1         113 RAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAG  178 (327)
T ss_dssp             TCTTEEEEEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHHHTTCSEEEEEECC-
T ss_pred             ccccccccccccccccccchhhhhHHHHHHHhcCCCeEEEeeccccccchhhhhccceEEEEecCC
Confidence            011111100 000    00  00001112233456789999887766  45668899999998774

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=97.04  E-value=0.00045  Score=72.41  Aligned_cols=25  Identities=28%  Similarity=0.445  Sum_probs=23.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      ..|.|.|+.||||||+++.|++.++
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5699999999999999999999875

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.00095  Score=65.39  Aligned_cols=28  Identities=21%  Similarity=0.110  Sum_probs=24.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGC   88 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~   88 (818)
                      +.++|+|-|+.||||||+++.|++.|..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            3467999999999999999999999854

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=97.02  E-value=0.00067  Score=71.12  Aligned_cols=27  Identities=30%  Similarity=0.416  Sum_probs=24.3

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      ....|.|.|+.||||||+++.|++.++
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHHhc
Confidence            357899999999999999999999874

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=96.89  E-value=0.00048  Score=72.28  Aligned_cols=43  Identities=12%  Similarity=0.130  Sum_probs=31.4

Q ss_pred             CEEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcchhhhhc
Q 003460          630 DLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHI  675 (818)
Q Consensus       630 D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~I  675 (818)
                      |..||++++.+..+.|...|.-.  +... ...|+..++..|..++
T Consensus       158 d~iIyLd~~pe~~l~RI~~RgR~--~E~i-d~~YL~~L~~~Y~~l~  200 (333)
T d1p6xa_         158 GNIVVTTLNVEEHIRRLRTRARI--GEQI-DITLIATLRNVYFMLV  200 (333)
T ss_dssp             EEEEEEECCHHHHHHHHHHHSCT--TCCC-CHHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHcCCC--cCCC-CHHHHHHHHHHHHHHH
Confidence            78999999999999998877532  2222 2467777877777654

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.88  E-value=0.00065  Score=68.20  Aligned_cols=56  Identities=25%  Similarity=0.322  Sum_probs=40.0

Q ss_pred             cccchhhHHHHHHHHHHHH-----hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460           39 ASFDHGYYLLVKSIQELRE-----KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME   94 (818)
Q Consensus        39 ~s~~~~~~~l~~~i~~~~~-----~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D   94 (818)
                      +.|.+.+..++...+...+     ...++.-|.+.||+|||||++|+.||..+|++++..+
T Consensus        12 i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~   72 (246)
T d1d2na_          12 IKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC   72 (246)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred             cCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhcccccccccc
Confidence            4455555555555544332     2234566999999999999999999999999887654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00032  Score=68.87  Aligned_cols=41  Identities=20%  Similarity=0.307  Sum_probs=34.3

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHh-----CCcccccccccch
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFKS  554 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~l-----g~~vis~Ddfy~~  554 (818)
                      .+.|.||.+.||+||||||.+.+||..+     .+.++++|.|--.
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~g   51 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAA   51 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccccc
Confidence            4579999999999999999999999876     2568888877543

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.0006  Score=64.99  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=21.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ..|.|+||||||||||++.|.+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            468889999999999999998764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00068  Score=68.52  Aligned_cols=34  Identities=29%  Similarity=0.369  Sum_probs=29.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME   94 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D   94 (818)
                      .+.-|.+.||+|+|||++|+.+|+.+|.+++..+
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~   77 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS   77 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEEC
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEE
Confidence            3566889999999999999999999998875543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.80  E-value=0.00033  Score=68.90  Aligned_cols=42  Identities=19%  Similarity=0.391  Sum_probs=34.8

Q ss_pred             cCCCCEEEeeeCCCCccHHHHHHHHHHHh-----CCcccccccccch
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFKS  554 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~l-----g~~vis~Ddfy~~  554 (818)
                      ..++|.+|.+.||+||||||.+.+||..+     .+.++++|.|--.
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~g   53 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA   53 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccc
Confidence            35689999999999999999999999876     2567888877543

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.79  E-value=0.00074  Score=67.88  Aligned_cols=34  Identities=32%  Similarity=0.347  Sum_probs=29.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME   94 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D   94 (818)
                      .+.-|.+.||+|+|||++|+.++..+|++++..+
T Consensus        41 ~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~   74 (247)
T d1ixza_          41 IPKGVLLVGPPGVGKTHLARAVAGEARVPFITAS   74 (247)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCceEEEecCCCCChhHHHHHHHHHcCCCEEEEE
Confidence            3456899999999999999999999998886654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.73  E-value=0.00032  Score=65.80  Aligned_cols=25  Identities=36%  Similarity=0.583  Sum_probs=22.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGC   88 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~   88 (818)
                      .|+|+||+|||||||++.++..++.
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCC
Confidence            4899999999999999999998853

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.64  E-value=0.00066  Score=66.69  Aligned_cols=41  Identities=24%  Similarity=0.400  Sum_probs=34.7

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHh-----CCeEEeccceecc
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRVG   99 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~L-----g~~vI~~D~~~~~   99 (818)
                      +.+|.+|.+.||+||||||.+.+||..+     .+.+|++|-|+-+
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~g   53 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA   53 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccc
Confidence            4678899999999999999999999866     2678999998653

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.64  E-value=0.00043  Score=64.63  Aligned_cols=24  Identities=29%  Similarity=0.284  Sum_probs=22.2

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      .+|||+|.+|||||||+.+|...|
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            489999999999999999998876

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.00069  Score=66.37  Aligned_cols=40  Identities=28%  Similarity=0.374  Sum_probs=34.1

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceec
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRV   98 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~   98 (818)
                      .++|.+|.+.||+||||||.+.+||..+   |  +.+|++|.|+-
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~   50 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRA   50 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            4568999999999999999999999766   2  67899999865

>d2fbla1 d.63.1.2 (A:2-151) Hypothetical protein NE1496 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Hypothetical protein NE1496
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.62  E-value=0.0025  Score=58.87  Aligned_cols=80  Identities=8%  Similarity=0.092  Sum_probs=54.7

Q ss_pred             eeEeeeCCEEEEEEcceeecCCCcccCceeEEEEec---cHHHHHHhcCCceeEEEEEEEEEEEe-CCEEEEEeccCC--
Q 003460          283 IKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---MTLGGLLDLGYSVVASYKRASTYVVY-GNLSVSFETIDT--  356 (818)
Q Consensus       283 lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v---~~~~~L~~LGf~~~~~~~K~R~~~~~-~~~~i~lD~v~~--  356 (818)
                      +|||..+..+.||+||+    .+   -+|.|+|..+   ....+|...+   ...++|.|..+.+ ++....+|...|  
T Consensus        36 vRiR~~~~~~~lTiK~~----~g---~~r~E~E~ei~~~~~~~L~~~~~---~~~I~K~Ry~~~~~~~~~~evDvF~g~~  105 (150)
T d2fbla1          36 LRLRQQGTEYFMTLKSE----GG---LSRQEYEIQIDVTQFEMLWPATE---GRRVEKTRYSGKLPDGQLFELDVFAGHL  105 (150)
T ss_dssp             EEEEEETTEEEEEEEC-------------CEEEEEECHHHHHHHGGGGT---TSEEEEEEEEEECTTCCEEEEEEECGGG
T ss_pred             EEEEEcCCEEEEEEccC----CC---ceeEEEEeeccHHHHHHHHhhCC---CcceEEEEEEEEeCCCeEEEEEEECCCC
Confidence            69998899999999974    34   3788888888   4444444433   3368999999987 567788887753  


Q ss_pred             CCCCeEEEEecCHHHH
Q 003460          357 LDETFMVLRGTNRKTV  372 (818)
Q Consensus       357 lg~~fvEiE~~~~~~i  372 (818)
                      -|=..+|||-.+++..
T Consensus       106 ~gLilaEvE~~se~~~  121 (150)
T d2fbla1         106 SPLMLVEVEFLSEDAA  121 (150)
T ss_dssp             TTCEEEEEEESSHHHH
T ss_pred             cceEEEEEEecCcccc
Confidence            2334899998766553

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.61  E-value=0.0011  Score=65.40  Aligned_cols=31  Identities=35%  Similarity=0.500  Sum_probs=26.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEe
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLIS   92 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~   92 (818)
                      ..-+.+.||+|+||||+|+.|++.+++..+.
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~   65 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASELQTNIHV   65 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhccCCCccc
Confidence            3446799999999999999999999876554

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.59  E-value=0.0012  Score=65.12  Aligned_cols=30  Identities=37%  Similarity=0.516  Sum_probs=25.1

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSL  548 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~  548 (818)
                      -+.+.||+|+||||+|+.|++.+++..+.+
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~~~   66 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTNIHVT   66 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCCcccc
Confidence            355799999999999999999998665443

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.58  E-value=0.00044  Score=64.76  Aligned_cols=23  Identities=39%  Similarity=0.650  Sum_probs=21.6

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhC
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      |+|+||+|||||||++.++..++
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~   25 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCC
Confidence            88999999999999999999875

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.57  E-value=0.00057  Score=66.88  Aligned_cols=40  Identities=18%  Similarity=0.188  Sum_probs=33.1

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHh-----CCcccccccccch
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFKS  554 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~l-----g~~vis~Ddfy~~  554 (818)
                      ++|.+|.+.||+||||||.+.+|+..+     .+.++++|.|--.
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~g   48 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAA   48 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecccccc
Confidence            467899999999999999999999876     2558888877543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.00084  Score=70.25  Aligned_cols=38  Identities=21%  Similarity=0.483  Sum_probs=31.1

Q ss_pred             HHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          504 VQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       504 ~~~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      .+.+.++....++.++|||+|++|||||||..+|...+
T Consensus        41 ~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          41 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            34455555567789999999999999999999998765

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.55  E-value=0.00056  Score=67.12  Aligned_cols=41  Identities=24%  Similarity=0.422  Sum_probs=30.2

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHh-----CCcccccccccch
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFKS  554 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~l-----g~~vis~Ddfy~~  554 (818)
                      .+.|.||.+.||+||||||.+.+|+..+     .+.++++|.|--.
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~g   54 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPA   54 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccc
Confidence            3579999999999999999999999876     2668888877554

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.0017  Score=64.28  Aligned_cols=29  Identities=31%  Similarity=0.503  Sum_probs=26.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEE
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLI   91 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI   91 (818)
                      ..+.+.||+|+||||+|+.||+.+++.++
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~~~~~   81 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELGYDIL   81 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhhhh
Confidence            46889999999999999999999997664

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.42  E-value=0.0015  Score=64.04  Aligned_cols=48  Identities=27%  Similarity=0.308  Sum_probs=33.1

Q ss_pred             ccch--hhHHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460           40 SFDH--GYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGC   88 (818)
Q Consensus        40 s~~~--~~~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~   88 (818)
                      +|++  +-..+++.++...+..+.+ .+.|.||+|+||||+|+.+++.+++
T Consensus        22 ~~~diig~~~~~~~l~~~i~~~~~~-~lll~Gp~G~GKTtla~~iak~l~~   71 (231)
T d1iqpa2          22 RLDDIVGQEHIVKRLKHYVKTGSMP-HLLFAGPPGVGKTTAALALARELFG   71 (231)
T ss_dssp             STTTCCSCHHHHHHHHHHHHHTCCC-EEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             CHHHccCcHHHHHHHHHHHHcCCCC-eEEEECCCCCcHHHHHHHHHHHHHh
Confidence            3444  3344555555555544444 3669999999999999999987753

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=96.42  E-value=0.0047  Score=64.40  Aligned_cols=46  Identities=15%  Similarity=0.151  Sum_probs=29.9

Q ss_pred             CCEEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcchhhhhccc
Q 003460          629 LDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEP  677 (818)
Q Consensus       629 ~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p  677 (818)
                      -|..||+++++++.+.|...|...  +... ...|...++..|..++..
T Consensus       160 pdliIyLd~~pe~~l~RIk~RgR~--~E~i-~~eYL~~L~~~Y~~L~nT  205 (331)
T d1osna_         160 GTNLVVCTVSLPSHLSRVSKRARP--GETV-NLPFVMVLRNVYIMLINT  205 (331)
T ss_dssp             CCEEEEEECCHHHHHHHCC--------CCC-CHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHcCCC--CCCC-CHHHHHHHHHHHHHHHHH
Confidence            379999999999999998877532  2222 246777777777776543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.41  E-value=0.00091  Score=65.37  Aligned_cols=40  Identities=25%  Similarity=0.305  Sum_probs=33.4

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceecc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVG   99 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~   99 (818)
                      +++.+|.+.||+||||||.+.+||..+   |  +.+|++|.|+-+
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~g   48 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAA   48 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecccccc
Confidence            467899999999999999999999866   2  567899988653

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.38  E-value=0.0011  Score=65.05  Aligned_cols=39  Identities=28%  Similarity=0.326  Sum_probs=29.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh-----CCeEEeccceec
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRV   98 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L-----g~~vI~~D~~~~   98 (818)
                      +.|.+|.+.||+||||||.+.+||..+     .+.+|++|.|+-
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~   53 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRP   53 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeecccc
Confidence            468899999999999999999999866     267899998865

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.33  E-value=0.0013  Score=64.65  Aligned_cols=45  Identities=22%  Similarity=0.295  Sum_probs=30.8

Q ss_pred             HHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccc
Q 003460          505 QAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES  550 (818)
Q Consensus       505 ~~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Dd  550 (818)
                      +.++....+...|. +.+.||+|+||||+|+.+++.+++...+.+.
T Consensus        34 ~~l~~~i~~~~~~~-lll~Gp~G~GKTtla~~iak~l~~~~~~~~~   78 (231)
T d1iqpa2          34 KRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELFGENWRHNF   78 (231)
T ss_dssp             HHHHHHHHHTCCCE-EEEESCTTSSHHHHHHHHHHHHHGGGHHHHE
T ss_pred             HHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHHHhcccCCCe
Confidence            34444444444454 5589999999999999999987654443333

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.33  E-value=0.0019  Score=64.73  Aligned_cols=34  Identities=35%  Similarity=0.392  Sum_probs=29.4

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE  549 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D  549 (818)
                      ++.-|.+.||+|||||++|+.|++.++++++.++
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~   72 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC   72 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhcccccccccc
Confidence            3456889999999999999999999998877654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.00094  Score=62.05  Aligned_cols=23  Identities=43%  Similarity=0.677  Sum_probs=21.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHh
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .|.|+|++|||||||++.+++.+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            48999999999999999999877

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.29  E-value=0.0011  Score=64.66  Aligned_cols=40  Identities=25%  Similarity=0.130  Sum_probs=32.5

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHh-----CCcccccccccch
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFKS  554 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~l-----g~~vis~Ddfy~~  554 (818)
                      +.+.||.+.||+|+||||.+.+|+..+     .+.++++|.|--.
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~g   52 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA   52 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccch
Confidence            356789999999999999999999877     2568888877543

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.26  E-value=0.002  Score=63.55  Aligned_cols=54  Identities=30%  Similarity=0.411  Sum_probs=36.5

Q ss_pred             ccch--hhHHHHHHHHHHHH----hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460           40 SFDH--GYYLLVKSIQELRE----KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM   93 (818)
Q Consensus        40 s~~~--~~~~l~~~i~~~~~----~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~   93 (818)
                      +|++  |-..+.+.++....    +...+.-+.+.||+|+||||+|+.+++.+++.....
T Consensus         7 ~~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~   66 (239)
T d1ixsb2           7 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT   66 (239)
T ss_dssp             SGGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence            5666  33445555544332    223344577999999999999999999998765443

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.25  E-value=0.0022  Score=64.65  Aligned_cols=35  Identities=26%  Similarity=0.387  Sum_probs=29.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN   95 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~   95 (818)
                      .+.-|.+.||+|+|||++++.++..++.+++..+.
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~   71 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANETGAFFFLING   71 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECH
T ss_pred             CCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEc
Confidence            34568899999999999999999999988766553

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.001  Score=61.77  Aligned_cols=23  Identities=43%  Similarity=0.729  Sum_probs=21.3

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHh
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      .|.|+||+|||||||++.++..+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            48899999999999999999887

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.22  E-value=0.0018  Score=63.25  Aligned_cols=40  Identities=33%  Similarity=0.279  Sum_probs=33.1

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceecc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVG   99 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~   99 (818)
                      +.+.+|.+.||+|+||||++.+||..+   |  +.+|++|.|+-+
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~g   52 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA   52 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccch
Confidence            346789999999999999999999876   2  568899988653

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.14  E-value=0.0017  Score=63.65  Aligned_cols=33  Identities=24%  Similarity=0.486  Sum_probs=27.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhC----CeEEeccc
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIG----CTLISMEN   95 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg----~~vI~~D~   95 (818)
                      ++|+|+|+.|||||||.+.|.+.++    +.+|+.|.
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d~   37 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT   37 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEecCc
Confidence            5899999999999999999987663    45677654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.03  E-value=0.0015  Score=63.98  Aligned_cols=32  Identities=34%  Similarity=0.530  Sum_probs=25.7

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhC----Ccccccc
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVG----CEVVSLE  549 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg----~~vis~D  549 (818)
                      +||+|+|+.|||||||.++|...++    +.+|..|
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d   36 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD   36 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEecC
Confidence            5899999999999999999987663    3355544

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.99  E-value=0.0034  Score=61.82  Aligned_cols=31  Identities=35%  Similarity=0.471  Sum_probs=25.1

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVS  547 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis  547 (818)
                      +.-+.+.||+|+||||+|+.++..+++....
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~   65 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRV   65 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence            3345589999999999999999999866443

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.0022  Score=64.66  Aligned_cols=35  Identities=31%  Similarity=0.445  Sum_probs=29.5

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE  549 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D  549 (818)
                      ..|.-|.+.||+|+|||++|+.|++.++.++++++
T Consensus        43 ~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~   77 (256)
T d1lv7a_          43 KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS   77 (256)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEEC
T ss_pred             CCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEE
Confidence            34667889999999999999999999998775543

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.86  E-value=0.0054  Score=57.00  Aligned_cols=29  Identities=31%  Similarity=0.454  Sum_probs=26.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIGC   88 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~   88 (818)
                      .+..+|.+.|.-||||||+++.+++.+|+
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            45689999999999999999999999984

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.84  E-value=0.0047  Score=61.01  Aligned_cols=30  Identities=33%  Similarity=0.496  Sum_probs=25.6

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVV  546 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vi  546 (818)
                      +..+.+.||+|+||||+|+.|++.+++.++
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~~~~~~   81 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQELGYDIL   81 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHhhhh
Confidence            346778999999999999999999986654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.81  E-value=0.0038  Score=64.53  Aligned_cols=33  Identities=27%  Similarity=0.558  Sum_probs=26.9

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL  548 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~  548 (818)
                      +|.-|.+.||+|+|||.+|+.|++.++...+.+
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i   80 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV   80 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccccchhcc
Confidence            456677899999999999999999998654443

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.81  E-value=0.0048  Score=65.23  Aligned_cols=43  Identities=23%  Similarity=0.207  Sum_probs=35.7

Q ss_pred             HHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460           51 SIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM   93 (818)
Q Consensus        51 ~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~   93 (818)
                      .+.......+++..+.+.||+|+|||++|+.|+..+|..+++.
T Consensus       143 ~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~i  185 (362)
T d1svma_         143 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV  185 (362)
T ss_dssp             HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred             HHHHHHhCCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            3344445556677999999999999999999999999999875

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.75  E-value=0.0024  Score=63.96  Aligned_cols=35  Identities=31%  Similarity=0.426  Sum_probs=30.3

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE  549 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D  549 (818)
                      ..|.-|.+.||+|+|||++|+.|++.++++++.+|
T Consensus        40 ~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~   74 (247)
T d1ixza_          40 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITAS   74 (247)
T ss_dssp             CCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEE
Confidence            45666889999999999999999999998877665

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.72  E-value=0.0072  Score=59.56  Aligned_cols=40  Identities=20%  Similarity=0.124  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHcC-CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          503 SVQAIQALLENK-GLPVIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       503 ~~~~i~~l~~~~-~~p~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      +.+++.....+. ..|..+.|.||+|+||||+++.|++.+.
T Consensus        28 l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          28 LDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             HHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            344555544443 3456788999999999999999999874

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.66  E-value=0.0082  Score=55.69  Aligned_cols=29  Identities=31%  Similarity=0.492  Sum_probs=26.2

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGC  543 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~  543 (818)
                      .+..+|.+.|+-|||||||++.+++.+|.
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            45679999999999999999999999983

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.64  E-value=0.0033  Score=65.01  Aligned_cols=35  Identities=26%  Similarity=0.514  Sum_probs=28.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeE--Eeccce
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTL--ISMENY   96 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~v--I~~D~~   96 (818)
                      +.-|.+.||||+|||.+|+.||+.++.+.  +++-.|
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~   85 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF   85 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             CceEEEECCCCCCHHHHHHHHhhccccchhccccccc
Confidence            45577899999999999999999998665  455445

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.62  E-value=0.004  Score=60.73  Aligned_cols=40  Identities=23%  Similarity=0.214  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460           48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGC   88 (818)
Q Consensus        48 l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~   88 (818)
                      +++.++...++...+- +.+.||+|+||||+|+.|++.+++
T Consensus        23 ~~~~L~~~~~~~~~~~-~ll~Gp~G~GKTt~a~~la~~l~~   62 (224)
T d1sxjb2          23 TIDRLQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHELLG   62 (224)
T ss_dssp             HHHHHHHHHHSCCCCC-EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHcCCCCe-EEEECCCCCCchhhHHHHHHHHhc
Confidence            4455555544443332 568999999999999999998764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.50  E-value=0.0046  Score=60.29  Aligned_cols=39  Identities=26%  Similarity=0.375  Sum_probs=28.2

Q ss_pred             HHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 003460          505 QAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCE  544 (818)
Q Consensus       505 ~~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~  544 (818)
                      +.++....+...|- +.+.||+|+||||+|+.|++.+++.
T Consensus        25 ~~L~~~~~~~~~~~-~ll~Gp~G~GKTt~a~~la~~l~~~   63 (224)
T d1sxjb2          25 DRLQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHELLGR   63 (224)
T ss_dssp             HHHHHHHHSCCCCC-EEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHcCCCCe-EEEECCCCCCchhhHHHHHHHHhcc
Confidence            34444444544454 4479999999999999999987644

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.46  E-value=0.0085  Score=63.23  Aligned_cols=40  Identities=25%  Similarity=0.330  Sum_probs=33.4

Q ss_pred             HHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 003460          509 ALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL  548 (818)
Q Consensus       509 ~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~  548 (818)
                      ....+..++..+.+.||+|+|||++|+.|++.+|..++++
T Consensus       146 ~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~i  185 (362)
T d1svma_         146 CMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV  185 (362)
T ss_dssp             HHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred             HHHhCCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            3344555666889999999999999999999999888875

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.39  E-value=0.0075  Score=58.61  Aligned_cols=41  Identities=24%  Similarity=0.264  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           46 YLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        46 ~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      ...++.++...+...-+- +.+.||+|+||||+++.+++.++
T Consensus        20 ~~~~~~L~~~i~~~~~~~-lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          20 NEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             HHHHHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCe-EEEECCCCCChhHHHHHHHHHhh
Confidence            345555655555444333 55899999999999999998764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.35  E-value=0.0035  Score=62.42  Aligned_cols=24  Identities=33%  Similarity=0.479  Sum_probs=21.3

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+||||||+.+.|+..+
T Consensus        30 e~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          30 EFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhcCC
Confidence            379999999999999999998655

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.33  E-value=0.0031  Score=62.46  Aligned_cols=24  Identities=38%  Similarity=0.600  Sum_probs=20.9

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||||||||||.+.|+...
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          32 EFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCcchhhHhccCCC
Confidence            379999999999999999887644

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.30  E-value=0.0056  Score=61.77  Aligned_cols=35  Identities=34%  Similarity=0.419  Sum_probs=30.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN   95 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~   95 (818)
                      .+.-|.+.||+|+|||++++.+|..+|++++..+.
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~   74 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG   74 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECH
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEH
Confidence            34568899999999999999999999998876653

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.29  E-value=0.0092  Score=61.70  Aligned_cols=34  Identities=32%  Similarity=0.640  Sum_probs=28.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEE--eccce
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLI--SMENY   96 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI--~~D~~   96 (818)
                      -.+.++||+|+|||.+|+.||+.++.+++  ++-.|
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~   88 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY   88 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred             eEEEEECCCcchhHHHHHHHHhhccCCeeEeccccc
Confidence            47889999999999999999999997765  44445

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.29  E-value=0.0039  Score=61.49  Aligned_cols=43  Identities=21%  Similarity=0.297  Sum_probs=30.1

Q ss_pred             hhHHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           44 GYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        44 ~~~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      +...+.+.++..........-+.|.||+|+||||+|+.+++.+
T Consensus        15 g~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          15 HNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             SCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            3344555555444434334446799999999999999999876

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.28  E-value=0.0046  Score=62.39  Aligned_cols=35  Identities=34%  Similarity=0.389  Sum_probs=30.1

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE  549 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D  549 (818)
                      ..+.-|.+.||+|+|||++++.++..+|+++++++
T Consensus        39 ~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~   73 (265)
T d1r7ra3          39 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK   73 (265)
T ss_dssp             CCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEE
Confidence            34567889999999999999999999998876655

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.28  E-value=0.0045  Score=64.19  Aligned_cols=47  Identities=26%  Similarity=0.478  Sum_probs=33.6

Q ss_pred             HHHHHHHHHH---cCCCCE-EEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460          503 SVQAIQALLE---NKGLPV-IVGIGGPSGSGKTSLAHKMANIVGCEVVSLE  549 (818)
Q Consensus       503 ~~~~i~~l~~---~~~~p~-iIgIsG~sGSGKTTla~~L~~~lg~~vis~D  549 (818)
                      +..+++.+..   +.++|. ++.+.||+|+|||.+|+.|++.++.+.+..|
T Consensus        34 v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d   84 (315)
T d1r6bx3          34 LTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFD   84 (315)
T ss_dssp             HHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             HHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhccCCeeEec
Confidence            3344544443   334554 7889999999999999999999986655444

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.27  E-value=0.0048  Score=66.96  Aligned_cols=34  Identities=32%  Similarity=0.535  Sum_probs=30.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN   95 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~   95 (818)
                      +.-|.+.||+|||||-+|+.||+.++++.+-.|.
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~da   82 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   82 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhCCCEEEeec
Confidence            4469999999999999999999999999887776

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.0038  Score=61.81  Aligned_cols=24  Identities=38%  Similarity=0.570  Sum_probs=21.2

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+|||||||.+.++-.+
T Consensus        27 ei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhcCC
Confidence            479999999999999999987654

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.0029  Score=62.98  Aligned_cols=24  Identities=33%  Similarity=0.506  Sum_probs=21.2

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||||||||||.+.|+-.+
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCc
Confidence            479999999999999999987644

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.24  E-value=0.0037  Score=62.32  Aligned_cols=24  Identities=38%  Similarity=0.649  Sum_probs=21.3

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -+|||.|+||||||||++.|...+
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            369999999999999999987755

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=0.004  Score=62.09  Aligned_cols=25  Identities=36%  Similarity=0.521  Sum_probs=22.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .-+|||.|++|||||||++.|...+
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcC
Confidence            3569999999999999999997755

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.21  E-value=0.0097  Score=58.60  Aligned_cols=44  Identities=18%  Similarity=0.094  Sum_probs=32.4

Q ss_pred             hhHHHHHHHHHHHHhc-CCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           44 GYYLLVKSIQELREKK-GGIVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        44 ~~~~l~~~i~~~~~~~-~~~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      ....+...|....+.. ..+..+.|.||+|+||||+++.|++.+.
T Consensus        24 ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          24 QLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             HHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            3445566665544433 3456789999999999999999999874

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.21  E-value=0.0041  Score=60.71  Aligned_cols=38  Identities=24%  Similarity=0.256  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        48 l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      +++.++...+....+ .+.+.||+|+||||+++.+++.+
T Consensus        20 ~~~~l~~~i~~~~~~-~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          20 AVTVLKKTLKSANLP-HMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             THHHHHHHTTCTTCC-CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCC-eEEEECCCCCChHHHHHHHHHHH
Confidence            344444444433322 36799999999999999999875

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=95.17  E-value=0.0035  Score=61.97  Aligned_cols=24  Identities=33%  Similarity=0.429  Sum_probs=21.5

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+|||||||.+.|+..+
T Consensus        27 e~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          27 EYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Confidence            379999999999999999998755

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.17  E-value=0.0039  Score=61.71  Aligned_cols=25  Identities=36%  Similarity=0.474  Sum_probs=21.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      --++||.|++|||||||.+.++..+
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          31 GEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCcchhhHhccCCC
Confidence            3579999999999999999997654

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.14  E-value=0.0047  Score=61.47  Aligned_cols=25  Identities=32%  Similarity=0.335  Sum_probs=22.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      --++||.|++||||||+++.++..+
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCC
Confidence            3479999999999999999998755

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.10  E-value=0.005  Score=60.94  Aligned_cols=26  Identities=35%  Similarity=0.396  Sum_probs=22.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .--++||.||+|||||||.+.++..+
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            34579999999999999999997654

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.08  E-value=0.0039  Score=62.78  Aligned_cols=24  Identities=29%  Similarity=0.454  Sum_probs=21.1

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.|++|||||||++.|.-.+
T Consensus        29 Ei~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          29 DVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCc
Confidence            479999999999999999997644

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.08  E-value=0.012  Score=56.95  Aligned_cols=38  Identities=26%  Similarity=0.454  Sum_probs=28.0

Q ss_pred             HHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          504 VQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       504 ~~~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      ++.++....+...|. +.+.||+|+||||+|+.+++.++
T Consensus        23 ~~~L~~~i~~~~~~~-lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          23 ITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             HHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCe-EEEECCCCCChhHHHHHHHHHhh
Confidence            444555555555554 44899999999999999998764

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.00  E-value=0.0041  Score=61.89  Aligned_cols=25  Identities=28%  Similarity=0.353  Sum_probs=22.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      --++||.|++|||||||++.++..+
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCc
Confidence            3579999999999999999997654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.95  E-value=0.0036  Score=62.30  Aligned_cols=24  Identities=42%  Similarity=0.624  Sum_probs=21.4

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||||||||||.+.|+...
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCc
Confidence            479999999999999999998754

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.95  E-value=0.0044  Score=62.19  Aligned_cols=24  Identities=33%  Similarity=0.512  Sum_probs=21.1

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -+|||.|+||||||||++.|...+
T Consensus        42 e~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CEEEEECCCCChHHHHHHHHhccc
Confidence            379999999999999999987654

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.93  E-value=0.0049  Score=61.87  Aligned_cols=25  Identities=36%  Similarity=0.469  Sum_probs=21.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .-+|||.|++|||||||++.|...+
T Consensus        41 Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          41 GKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCEEEEECCCCChHHHHHHHHhccc
Confidence            3479999999999999999997655

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=94.92  E-value=0.0052  Score=61.29  Aligned_cols=25  Identities=28%  Similarity=0.595  Sum_probs=21.9

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      --+|||.|++|||||||++.|...+
T Consensus        28 Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          28 NSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3589999999999999999987655

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.92  E-value=0.0055  Score=60.86  Aligned_cols=24  Identities=33%  Similarity=0.498  Sum_probs=21.4

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+|||||||.+.|.-.+
T Consensus        33 e~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHHcCC
Confidence            379999999999999999988755

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.0052  Score=61.56  Aligned_cols=24  Identities=33%  Similarity=0.657  Sum_probs=21.2

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -+|||.|++|||||||++.|...+
T Consensus        41 e~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhccc
Confidence            479999999999999999987655

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.88  E-value=0.0072  Score=60.62  Aligned_cols=35  Identities=31%  Similarity=0.416  Sum_probs=29.7

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE  549 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D  549 (818)
                      ..|.=|.+.||+|||||+++++++..++..++..+
T Consensus        36 ~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~   70 (258)
T d1e32a2          36 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN   70 (258)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEE
Confidence            35667889999999999999999999997766544

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.87  E-value=0.0058  Score=60.70  Aligned_cols=23  Identities=35%  Similarity=0.579  Sum_probs=20.8

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHh
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      +++|.||+|||||||.+.|+..+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            67899999999999999998765

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=94.86  E-value=0.0047  Score=60.99  Aligned_cols=26  Identities=35%  Similarity=0.359  Sum_probs=22.7

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .--++||.||+||||||+.+.|+..+
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            34579999999999999999998755

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.85  E-value=0.0067  Score=59.06  Aligned_cols=27  Identities=19%  Similarity=0.204  Sum_probs=24.2

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      +-.+|.|.|+.||||||+++.|++.|.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            456788999999999999999999985

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.0059  Score=61.18  Aligned_cols=26  Identities=31%  Similarity=0.470  Sum_probs=22.4

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      +--++||.|++|||||||++.|...+
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhccc
Confidence            34579999999999999999997655

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.80  E-value=0.0056  Score=61.60  Aligned_cols=26  Identities=27%  Similarity=0.310  Sum_probs=22.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .--++||.|++|||||||++.|+..+
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            34579999999999999999997644

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.80  E-value=0.0094  Score=57.99  Aligned_cols=34  Identities=29%  Similarity=0.477  Sum_probs=24.4

Q ss_pred             HHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          507 IQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       507 i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      ++....+...|. +.+.||+|+||||+++.+++.+
T Consensus        24 l~~~i~~~~~~~-lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          24 LKKTLKSANLPH-MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             HHHHTTCTTCCC-EEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCe-EEEECCCCCChHHHHHHHHHHH
Confidence            333333333343 5589999999999999999875

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=94.76  E-value=0.0078  Score=59.93  Aligned_cols=27  Identities=26%  Similarity=0.447  Sum_probs=23.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ++.-+|||.|++|||||||++.|...+
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          26 QPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            345689999999999999999997755

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.0073  Score=57.08  Aligned_cols=23  Identities=13%  Similarity=0.286  Sum_probs=19.9

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHh
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      +|.|+|||||||||++++|.+..
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             cEEEECCCCCCHHHHHHHHHHhC
Confidence            45669999999999999998765

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.70  E-value=0.0068  Score=65.73  Aligned_cols=36  Identities=28%  Similarity=0.519  Sum_probs=30.0

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHhCCccccccccc
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF  552 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy  552 (818)
                      |.=|.+.||+|||||.+|+.||..++++.+..|---
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~   84 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK   84 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecce
Confidence            334677899999999999999999998888777543

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.70  E-value=0.0073  Score=59.92  Aligned_cols=26  Identities=31%  Similarity=0.341  Sum_probs=22.5

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .--++||.||+||||||+.+.++..+
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCC
Confidence            33579999999999999999998755

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.67  E-value=0.0075  Score=59.84  Aligned_cols=23  Identities=30%  Similarity=0.595  Sum_probs=20.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHh
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      +++|.||+||||||+.+.|+..+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            67899999999999999998765

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.61  E-value=0.014  Score=57.78  Aligned_cols=25  Identities=32%  Similarity=0.377  Sum_probs=21.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      .++.|.||+|+||||+++.+++.++
T Consensus        47 ~~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          47 MIYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             eEEEeECCCCCCHHHHHHHHHHHHH
Confidence            3567789999999999999998773

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.60  E-value=0.0054  Score=59.33  Aligned_cols=24  Identities=33%  Similarity=0.649  Sum_probs=21.3

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+|||||||.+.|+..+
T Consensus        28 ei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          28 NVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhccc
Confidence            378999999999999999998755

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.57  E-value=0.0072  Score=58.21  Aligned_cols=47  Identities=11%  Similarity=-0.076  Sum_probs=31.1

Q ss_pred             cCCEEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcchhhhhc
Q 003460          628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHI  675 (818)
Q Consensus       628 ~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~I  675 (818)
                      ..|+.+|+++++++++.|...|....+ ...+...|...++..|.++.
T Consensus       131 ~pdl~i~Ld~~~e~~~~Ri~~R~~~~~-~~~~~~~~~~~v~~~y~~~~  177 (210)
T d4tmka_         131 RPDLTLYLDVTPEVGLKRARARGELDR-IEQESFDFFNRTRARYLELA  177 (210)
T ss_dssp             CCSEEEEEECCHHHHHHHHHHHSSCCT-TTTSCHHHHHHHHHHHHHHH
T ss_pred             CCceEEEecchHHHHHHHhhhccccch-hhhccHHHHHHHHHHHHHHH
Confidence            469999999999999999988863221 01111345566666666654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.56  E-value=0.0049  Score=61.36  Aligned_cols=25  Identities=40%  Similarity=0.545  Sum_probs=22.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      --++||.|++||||||+.+.++..+
T Consensus        31 Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          31 GERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCc
Confidence            3579999999999999999998754

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.46  E-value=0.0073  Score=61.50  Aligned_cols=24  Identities=38%  Similarity=0.526  Sum_probs=21.3

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -+|||.||+|||||||.+.|...+
T Consensus        63 e~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhCCC
Confidence            469999999999999999997655

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.46  E-value=0.019  Score=56.46  Aligned_cols=48  Identities=23%  Similarity=0.216  Sum_probs=34.4

Q ss_pred             ccch--hhHHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           40 SFDH--GYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        40 s~~~--~~~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      +|++  +...+++.+....+..+-+-.+.|.|++|+||||+|+.+++.++
T Consensus        10 ~~~dlig~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          10 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             SGGGSCSCHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CHHHccChHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            3444  34455666665555555455677999999999999999999874

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.44  E-value=0.0052  Score=59.41  Aligned_cols=25  Identities=32%  Similarity=0.555  Sum_probs=22.0

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .-++||.|++|||||||.+.++..+
T Consensus        27 Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          27 GNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhccc
Confidence            3479999999999999999998755

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.34  E-value=0.013  Score=55.22  Aligned_cols=33  Identities=36%  Similarity=0.432  Sum_probs=27.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY   96 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~   96 (818)
                      .-|.|+|+||+||||+|..|.+. |..+|+=|..
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~-g~~lv~DD~~   47 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQR-GHRLIADDRV   47 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT-TCEEEEEEEE
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc-CCeEEecCeE
Confidence            34899999999999999999874 8877776654

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.33  E-value=0.0086  Score=60.97  Aligned_cols=25  Identities=36%  Similarity=0.422  Sum_probs=21.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      --+|||.|++|||||||.+.|+..+
T Consensus        62 Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          62 GEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCC
Confidence            3469999999999999999997755

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.28  E-value=0.011  Score=58.15  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=20.1

Q ss_pred             EeeeCCCCccHHHHHHHHHHHh
Q 003460          520 VGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~l  541 (818)
                      +.|.||+|+||||+|+.+++.+
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhh
Confidence            5589999999999999999876

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.027  Score=55.28  Aligned_cols=39  Identities=26%  Similarity=0.258  Sum_probs=29.1

Q ss_pred             HHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          504 VQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       504 ~~~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      ++.+.....+.+-|-.+.+.||+|+||||+|+.+++.++
T Consensus        21 ~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          21 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             HHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            344444444555565567899999999999999998874

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.0097  Score=58.76  Aligned_cols=22  Identities=41%  Similarity=0.748  Sum_probs=19.9

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      -++||.||+|||||||.+.|+.
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            3799999999999999998875

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.12  E-value=0.016  Score=50.98  Aligned_cols=28  Identities=14%  Similarity=0.138  Sum_probs=25.0

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      .++-+.|.++|-+||||||+|++|...|
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            4567999999999999999999998766

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.08  E-value=0.0095  Score=59.70  Aligned_cols=24  Identities=33%  Similarity=0.570  Sum_probs=21.2

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+|||||||.+.|.-.+
T Consensus        31 ei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          31 DVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHCCC
Confidence            379999999999999999987654

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=94.01  E-value=0.01  Score=59.02  Aligned_cols=24  Identities=38%  Similarity=0.567  Sum_probs=21.3

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -++||.||+||||||+.+.|.-.+
T Consensus        33 ei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          33 QIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            479999999999999999987654

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.99  E-value=0.007  Score=60.72  Aligned_cols=24  Identities=29%  Similarity=0.426  Sum_probs=20.7

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -+|+|.|++|||||||++.|...+
T Consensus        45 e~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHhcC
Confidence            378999999999999999887644

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.96  E-value=0.0076  Score=60.49  Aligned_cols=25  Identities=32%  Similarity=0.377  Sum_probs=21.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      --+|||.|++|||||||++.|...+
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhcC
Confidence            3479999999999999999997654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.96  E-value=0.015  Score=57.45  Aligned_cols=25  Identities=40%  Similarity=0.448  Sum_probs=21.8

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      .++.+.||+|+||||+++.+++.++
T Consensus        47 ~~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          47 MIYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             eEEEeECCCCCCHHHHHHHHHHHHH
Confidence            3567899999999999999998874

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.74  E-value=0.015  Score=54.91  Aligned_cols=33  Identities=27%  Similarity=0.307  Sum_probs=26.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY   96 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~   96 (818)
                      .=|.|+|+||+||||+|..|.+. |..+|+=|..
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~-G~~lvaDD~v   48 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINK-NHLFVGDDAI   48 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT-TCEEEEEEEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc-CCceecCCeE
Confidence            34889999999999999999764 8877766653

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=93.65  E-value=0.013  Score=58.17  Aligned_cols=25  Identities=32%  Similarity=0.642  Sum_probs=21.9

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      --++||.||+|||||||.+.|+..+
T Consensus        28 Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          28 GEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3489999999999999999988755

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.63  E-value=0.014  Score=58.54  Aligned_cols=25  Identities=32%  Similarity=0.448  Sum_probs=21.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      --++||.|++|||||||.+.|+..+
T Consensus        30 Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          30 GDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHCCC
Confidence            3479999999999999999997644

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=93.62  E-value=0.014  Score=57.98  Aligned_cols=25  Identities=28%  Similarity=0.416  Sum_probs=21.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      --++||.||+||||||+.+.++..+
T Consensus        32 Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          32 GQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3579999999999999999997654

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.59  E-value=0.015  Score=54.91  Aligned_cols=34  Identities=26%  Similarity=0.267  Sum_probs=26.4

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK  553 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~  553 (818)
                      =|.|.|+||+||||+|..|... |..+++=|....
T Consensus        16 gvl~~G~sG~GKStlal~l~~~-g~~lv~DD~~~i   49 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQR-GHRLIADDRVDV   49 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT-TCEEEEEEEEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHc-CCeEEecCeEEE
Confidence            4778999999999999998874 777776554433

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=93.58  E-value=0.013  Score=57.74  Aligned_cols=23  Identities=30%  Similarity=0.575  Sum_probs=20.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHH
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      --++||.|++|||||||.+.|+.
T Consensus        25 Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          25 GEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             TCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            35799999999999999999976

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.43  E-value=0.023  Score=53.17  Aligned_cols=33  Identities=39%  Similarity=0.457  Sum_probs=27.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY   96 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~   96 (818)
                      .=|.|+|+||+||||+|..|.+. |..+|+=|..
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~-g~~li~DD~~   48 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKR-GHRLVADDNV   48 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEE
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc-CCeEEeCCeE
Confidence            34899999999999999998775 8877766654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=93.28  E-value=0.017  Score=57.18  Aligned_cols=26  Identities=31%  Similarity=0.524  Sum_probs=22.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ..-++||.||+|||||||.+.|+..+
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34579999999999999999997755

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.15  E-value=0.015  Score=54.97  Aligned_cols=32  Identities=28%  Similarity=0.240  Sum_probs=24.9

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY  551 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf  551 (818)
                      =|.|+|+||+||||+|..|.+. |..+++=|-.
T Consensus        17 gvli~G~sG~GKS~lal~l~~~-G~~lvaDD~v   48 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINK-NHLFVGDDAI   48 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTT-TCEEEEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHc-CCceecCCeE
Confidence            3678999999999999998763 7766655543

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.13  E-value=0.032  Score=54.68  Aligned_cols=28  Identities=21%  Similarity=0.133  Sum_probs=23.8

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhCCcc
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVGCEV  545 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg~~v  545 (818)
                      .+|.|.|++|+|||||++.++..++...
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~~~~~~~   57 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGINELNLPY   57 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCE
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHCCCCe
Confidence            4677899999999999999998887543

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.10  E-value=0.028  Score=55.14  Aligned_cols=30  Identities=17%  Similarity=0.100  Sum_probs=25.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhCCeEEe
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIGCTLIS   92 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~   92 (818)
                      ..|.|.|++|+|||||++.++..++....-
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~   59 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGINELNLPYIY   59 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHCCCCeEE
Confidence            467899999999999999999988765443

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.98  E-value=0.025  Score=52.92  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=21.5

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      --++.|+|++||||||||..++...
T Consensus        23 G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          23 GSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3578899999999999999998654

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=92.78  E-value=0.023  Score=53.19  Aligned_cols=33  Identities=30%  Similarity=0.297  Sum_probs=25.4

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhCCccccccccc
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF  552 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy  552 (818)
                      =|.|.|+||+||||+|-.|.+. |..+++=|-..
T Consensus        17 gvli~G~sg~GKS~la~~l~~~-g~~li~DD~~~   49 (169)
T d1ko7a2          17 GVLITGDSGIGKSETALELIKR-GHRLVADDNVE   49 (169)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHc-CCeEEeCCeEE
Confidence            4778999999999999888775 77666544433

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.028  Score=52.64  Aligned_cols=25  Identities=24%  Similarity=0.199  Sum_probs=21.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      -.++.|+|++||||||||..++...
T Consensus        23 G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          23 GSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3589999999999999999998643

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.67  E-value=0.025  Score=58.26  Aligned_cols=28  Identities=36%  Similarity=0.546  Sum_probs=24.1

Q ss_pred             CCCCE-EEeeeCCCCccHHHHHHHHHHHh
Q 003460          514 KGLPV-IVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       514 ~~~p~-iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      ..+|. ++.+.||+|+|||.+|+.|++.+
T Consensus        49 ~~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          49 PNRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            34564 77899999999999999999987

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=92.57  E-value=0.08  Score=54.56  Aligned_cols=31  Identities=35%  Similarity=0.522  Sum_probs=24.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC--CeEEeccc
Q 003460           65 VGIGGPSGSGKTSLAEKLASVIG--CTLISMEN   95 (818)
Q Consensus        65 IgI~G~sGSGKSTlA~~La~~Lg--~~vI~~D~   95 (818)
                      |.|+|++||||||+.+.|...+.  ..++...+
T Consensus       169 ili~G~tgSGKTT~l~al~~~i~~~~rivtiEd  201 (323)
T d1g6oa_         169 VIVCGGTGSGKTTYIKSIMEFIPKEERIISIED  201 (323)
T ss_dssp             EEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred             EEEEeeccccchHHHHHHhhhcccccceeeccc
Confidence            78899999999999999987653  34444433

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=92.52  E-value=0.04  Score=49.66  Aligned_cols=25  Identities=28%  Similarity=0.343  Sum_probs=21.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      .+-+.|+|.|.+|+|||||.+.+..
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhC
Confidence            3457799999999999999999864

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=92.47  E-value=0.04  Score=54.78  Aligned_cols=35  Identities=26%  Similarity=0.434  Sum_probs=29.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccce
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENY   96 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~   96 (818)
                      |++|+|+|--|+||||+|-.||..|   |  +.+||+|--
T Consensus         1 mr~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q   40 (269)
T d1cp2a_           1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             CCEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            5789999999999999999998876   4  567899863

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.47  E-value=0.06  Score=52.05  Aligned_cols=60  Identities=22%  Similarity=0.323  Sum_probs=37.3

Q ss_pred             cccccch-----hhHHHHHHHHHHHHhcCCc-EEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccce
Q 003460           37 VHASFDH-----GYYLLVKSIQELREKKGGI-VTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENY   96 (818)
Q Consensus        37 ~~~s~~~-----~~~~l~~~i~~~~~~~~~~-~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~   96 (818)
                      ...||++     ........+....+..... .-+.|.|++|||||.|+++++..+.     +.++++.++
T Consensus         5 ~~~tFdnF~vg~~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~   75 (213)
T d1l8qa2           5 PKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF   75 (213)
T ss_dssp             TTCCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCChhhccCCCcHHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHH
Confidence            3455555     2333444455444433322 1267999999999999999998662     445666555

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.41  E-value=0.07  Score=53.57  Aligned_cols=26  Identities=27%  Similarity=0.267  Sum_probs=22.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHH
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASV   85 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~   85 (818)
                      ....+|+|.|..|.||||||+.+.+.
T Consensus        42 ~~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          42 LDSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHh
Confidence            34679999999999999999998664

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=92.38  E-value=0.066  Score=51.25  Aligned_cols=46  Identities=15%  Similarity=0.276  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460           48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM   93 (818)
Q Consensus        48 l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~   93 (818)
                      .+..+....+..++.-.|.+.||+++|||++|..|.+.++..+++.
T Consensus        39 Fl~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis~   84 (205)
T d1tuea_          39 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISF   84 (205)
T ss_dssp             HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCC
T ss_pred             HHHHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHhCCEEEec
Confidence            3455555556677788899999999999999999999998777654

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.35  E-value=0.063  Score=51.54  Aligned_cols=36  Identities=14%  Similarity=0.063  Sum_probs=27.2

Q ss_pred             HHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          507 IQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       507 i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      +.....+.+-|--+.+.||+|+||||+|+.+++.+-
T Consensus        14 l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          14 LVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             HHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            333344555565677899999999999999998774

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=92.31  E-value=0.054  Score=56.86  Aligned_cols=35  Identities=29%  Similarity=0.421  Sum_probs=28.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN   95 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~   95 (818)
                      .+..|...||+|+|||-+|+.||+.++.+.+-.|.
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~~~~~~ir~D~  101 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDA  101 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhhcccceeehhh
Confidence            34558888999999999999999988776654444

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.27  E-value=0.054  Score=53.86  Aligned_cols=38  Identities=24%  Similarity=0.347  Sum_probs=32.0

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccce
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENY   96 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~   96 (818)
                      +++..+|.++|--|+||||+|-.||..|   |  +.+|++|..
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~   59 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA   59 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            6778999999999999999988888766   4  567899953

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.19  E-value=0.062  Score=53.40  Aligned_cols=35  Identities=20%  Similarity=0.372  Sum_probs=27.5

Q ss_pred             HHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHH
Q 003460           49 VKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLA   83 (818)
Q Consensus        49 ~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La   83 (818)
                      ...+..+.+.....+.|+|.|.+||||||+.+.|.
T Consensus        19 ~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~il   53 (257)
T d1h65a_          19 LELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSII   53 (257)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHH
T ss_pred             HHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHh
Confidence            34444455555677899999999999999999994

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.17  E-value=0.059  Score=55.37  Aligned_cols=34  Identities=38%  Similarity=0.582  Sum_probs=26.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHh---CCeE--Eeccce
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVI---GCTL--ISMENY   96 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~L---g~~v--I~~D~~   96 (818)
                      -++.+.||+|+|||.+|+.||+.+   +..+  +++-.|
T Consensus        54 ~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~   92 (315)
T d1qvra3          54 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY   92 (315)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred             eEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEecccc
Confidence            378899999999999999999987   3333  555555

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=92.12  E-value=0.063  Score=56.30  Aligned_cols=34  Identities=26%  Similarity=0.372  Sum_probs=26.7

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE  549 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D  549 (818)
                      .|--+...||+|+|||-+|++||+.++...+-.|
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~~~~~~ir~D  100 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD  100 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhhcccceeehh
Confidence            4555677899999999999999998875554444

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=92.05  E-value=0.037  Score=49.58  Aligned_cols=21  Identities=29%  Similarity=0.343  Sum_probs=19.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHH
Q 003460           64 TVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~   84 (818)
                      .|.|.|.+|||||||.+.|..
T Consensus         2 kivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            588999999999999999964

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.90  E-value=0.073  Score=53.42  Aligned_cols=27  Identities=22%  Similarity=0.260  Sum_probs=23.4

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHH
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANI  540 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~  540 (818)
                      .....+|+|.|..|.||||||+.+.+.
T Consensus        41 ~~~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          41 DLDSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             TSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHh
Confidence            345689999999999999999998765

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.89  E-value=0.084  Score=50.60  Aligned_cols=30  Identities=20%  Similarity=0.171  Sum_probs=24.7

Q ss_pred             hcCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        58 ~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      ..+-+--+.+.||+|+||||+|+.+++.+.
T Consensus        20 ~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          20 AGRGHHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             TTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cCCcCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            344455588899999999999999999774

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.84  E-value=0.053  Score=47.56  Aligned_cols=27  Identities=7%  Similarity=0.095  Sum_probs=24.3

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      ++-+.|-++|-+||||||+|++|...|
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            456899999999999999999998877

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=91.79  E-value=0.037  Score=50.97  Aligned_cols=26  Identities=31%  Similarity=0.356  Sum_probs=22.2

Q ss_pred             hcCCcEEEEEeCCCCCcHHHHHHHHH
Q 003460           58 KKGGIVTVGIGGPSGSGKTSLAEKLA   83 (818)
Q Consensus        58 ~~~~~~iIgI~G~sGSGKSTlA~~La   83 (818)
                      .+++.+.|++.|.+|||||||.+.|.
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHh
Confidence            34556889999999999999999883

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=91.64  E-value=0.036  Score=52.20  Aligned_cols=21  Identities=29%  Similarity=0.496  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLA   83 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La   83 (818)
                      ..|+|.|.+|||||||.+.|.
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhc
Confidence            469999999999999999995

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=91.62  E-value=0.051  Score=50.45  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=21.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHH
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      ..+.|||.|.+|+|||||.++|..
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHC
Confidence            457899999999999999999853

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=91.48  E-value=0.049  Score=50.04  Aligned_cols=20  Identities=45%  Similarity=0.508  Sum_probs=18.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q 003460           64 TVGIGGPSGSGKTSLAEKLA   83 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La   83 (818)
                      .|+|.|.+|||||||.+.|.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~   21 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLV   21 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58999999999999999995

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=91.43  E-value=0.059  Score=49.32  Aligned_cols=25  Identities=24%  Similarity=0.169  Sum_probs=21.8

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHH
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLA   83 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La   83 (818)
                      .++...|+|.|.+|||||||.++|.
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~   34 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLK   34 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHS
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHh
Confidence            4566789999999999999999984

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=91.29  E-value=0.049  Score=48.73  Aligned_cols=20  Identities=25%  Similarity=0.336  Sum_probs=18.0

Q ss_pred             EeeeCCCCccHHHHHHHHHH
Q 003460          520 VGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~  539 (818)
                      |.|.|++|||||||.++|..
T Consensus         3 ivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            66899999999999999864

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.16  E-value=0.066  Score=53.43  Aligned_cols=36  Identities=28%  Similarity=0.270  Sum_probs=29.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMEN   95 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~   95 (818)
                      +.+.+|.++|--|+||||+|..||..|   |  +-+||+|.
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp   46 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP   46 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            446678899999999999999998877   4  56789995

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=91.12  E-value=0.044  Score=50.42  Aligned_cols=28  Identities=25%  Similarity=0.281  Sum_probs=23.0

Q ss_pred             HHcCCCCEEEeeeCCCCccHHHHHHHHH
Q 003460          511 LENKGLPVIVGIGGPSGSGKTSLAHKMA  538 (818)
Q Consensus       511 ~~~~~~p~iIgIsG~sGSGKTTla~~L~  538 (818)
                      ....++.+-|.+.|++|||||||.++|.
T Consensus        10 ~~~~~~~~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          10 KSAPDQEVRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             SSCCSSCEEEEEEESTTSSHHHHHHHHC
T ss_pred             hCCCCCEEEEEEECCCCCCHHHHHHHHh
Confidence            3345567889999999999999999873

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=91.04  E-value=0.053  Score=49.79  Aligned_cols=21  Identities=33%  Similarity=0.433  Sum_probs=18.9

Q ss_pred             EEeeeCCCCccHHHHHHHHHH
Q 003460          519 IVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~  539 (818)
                      .|+|.|.+|||||||.++|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999863

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.82  E-value=0.091  Score=50.37  Aligned_cols=35  Identities=26%  Similarity=0.581  Sum_probs=28.1

Q ss_pred             cEEEEEe-CCCCCcHHHHHHHHHHHh---C--CeEEeccce
Q 003460           62 IVTVGIG-GPSGSGKTSLAEKLASVI---G--CTLISMENY   96 (818)
Q Consensus        62 ~~iIgI~-G~sGSGKSTlA~~La~~L---g--~~vI~~D~~   96 (818)
                      |++|+|+ |-.|+||||+|..||..|   |  +.+|++|-.
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~   41 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT   41 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            4677777 788999999999998866   3  567888864

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=90.81  E-value=0.068  Score=48.56  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=19.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLA   83 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La   83 (818)
                      .+.|+|.|.+|||||||.+.|.
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~   23 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFN   23 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHT
T ss_pred             cEEEEEECCCCCCHHHHHHHHc
Confidence            3679999999999999999984

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=90.79  E-value=0.043  Score=51.08  Aligned_cols=19  Identities=32%  Similarity=0.511  Sum_probs=17.9

Q ss_pred             EEEeCCCCCcHHHHHHHHH
Q 003460           65 VGIGGPSGSGKTSLAEKLA   83 (818)
Q Consensus        65 IgI~G~sGSGKSTlA~~La   83 (818)
                      |||.|.+++|||||.+.|.
T Consensus         4 VaiiG~~nvGKSSLin~L~   22 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVS   22 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSE
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            8999999999999999984

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.74  E-value=0.063  Score=53.58  Aligned_cols=35  Identities=31%  Similarity=0.425  Sum_probs=29.4

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccc
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLE  549 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~D  549 (818)
                      +.|.+|.++|--|+||||+|..|+..+   |  +-+|++|
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            457788899999999999999999877   3  5578888

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.66  E-value=0.069  Score=47.54  Aligned_cols=21  Identities=29%  Similarity=0.327  Sum_probs=19.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHH
Q 003460           64 TVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~   84 (818)
                      .|++.|.+|+|||||.+.|..
T Consensus         2 KI~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            488999999999999999965

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=90.56  E-value=0.15  Score=48.74  Aligned_cols=85  Identities=13%  Similarity=0.221  Sum_probs=50.4

Q ss_pred             HHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccc----ccchhhh-hcc-cCCCcccccHHHHHH-HH
Q 003460          505 QAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES----YFKSEQV-KDF-KYDDFSSLDLSLLSK-NI  577 (818)
Q Consensus       505 ~~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Dd----fy~~~~~-~~~-~~d~p~t~D~~ll~~-~L  577 (818)
                      .+....+...++.-.+.+-||+++|||++|..|...++..+++.-+    |....-. ... -+++.. ..-....+ .+
T Consensus        41 ~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis~~N~~s~F~Lq~l~~~kv~l~dD~t-~~~~~~~d~~l  119 (205)
T d1tuea_          41 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDAT-TTCWTYFDTYM  119 (205)
T ss_dssp             HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSSCGGGGGGTTCSSEEEEEEC-HHHHHHHHHHC
T ss_pred             HHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHhCCEEEeccCCCCCcccccccCCeEEEEeccc-cchHHHHHHHH
Confidence            3444555566666788899999999999999999999866665332    3322111 111 133322 12222233 46


Q ss_pred             HHHhcCCceeccc
Q 003460          578 SDIRNGRRTKVPI  590 (818)
Q Consensus       578 ~~L~~g~~v~~P~  590 (818)
                      ..+..|..+.+..
T Consensus       120 K~ll~G~~vsvd~  132 (205)
T d1tuea_         120 RNALDGNPISIDR  132 (205)
T ss_dssp             HHHHHTCCEEEC-
T ss_pred             HhccCCCeeeeec
Confidence            7778888776644

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=90.50  E-value=0.062  Score=48.50  Aligned_cols=21  Identities=43%  Similarity=0.590  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLA   83 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La   83 (818)
                      +.|+|.|.++||||||.++|.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~   22 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALA   22 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            569999999999999999995

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.50  E-value=0.047  Score=52.54  Aligned_cols=24  Identities=29%  Similarity=0.360  Sum_probs=20.5

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHH
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-.++.|+|++||||||||..++.
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            345788999999999999998864

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=90.47  E-value=0.073  Score=48.71  Aligned_cols=25  Identities=24%  Similarity=0.199  Sum_probs=21.3

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      ++-+.|.|.|.+|||||||.+.|..
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc
Confidence            3347799999999999999999864

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=90.43  E-value=0.078  Score=49.11  Aligned_cols=24  Identities=29%  Similarity=0.387  Sum_probs=21.2

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHH
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      ..+-|||.|.+|+|||||.++|..
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHC
Confidence            457899999999999999999864

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.36  E-value=0.091  Score=52.67  Aligned_cols=34  Identities=21%  Similarity=0.473  Sum_probs=28.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMEN   95 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~   95 (818)
                      |.+|+|.|--|+||||+|--||..|   |  +-+||+|.
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~Dp   40 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP   40 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCC
Confidence            6789999999999999888877755   5  45688886

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=90.35  E-value=0.047  Score=50.79  Aligned_cols=19  Identities=32%  Similarity=0.501  Sum_probs=17.7

Q ss_pred             EeeeCCCCccHHHHHHHHH
Q 003460          520 VGIGGPSGSGKTSLAHKMA  538 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~  538 (818)
                      |||.|++++|||||.++|.
T Consensus         4 VaiiG~~nvGKSSLin~L~   22 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVS   22 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSE
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            8999999999999999874

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.32  E-value=0.12  Score=49.91  Aligned_cols=22  Identities=36%  Similarity=0.436  Sum_probs=19.6

Q ss_pred             EeeeCCCCccHHHHHHHHHHHh
Q 003460          520 VGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~l  541 (818)
                      +-|.|++|||||.|++++++.+
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            4479999999999999999876

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=90.28  E-value=0.093  Score=47.06  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=20.0

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHH
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      -+-|.|.|.+|+|||||.+++..
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhC
Confidence            35688999999999999999865

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.22  E-value=0.067  Score=51.88  Aligned_cols=26  Identities=46%  Similarity=0.586  Sum_probs=22.0

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      .--++.|+|++||||||||-.++...
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34688999999999999999887643

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.15  E-value=0.075  Score=49.12  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=20.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHH
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      ..+|+|.|.+|+|||||.+.|..
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            34799999999999999999853

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=90.09  E-value=0.044  Score=56.59  Aligned_cols=23  Identities=30%  Similarity=0.497  Sum_probs=19.8

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhC
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      |.|+|++||||||+.+.|...+.
T Consensus       169 ili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         169 VIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             EEEEESTTSSHHHHHHHHGGGSC
T ss_pred             EEEEeeccccchHHHHHHhhhcc
Confidence            56799999999999999987653

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=90.08  E-value=0.16  Score=53.80  Aligned_cols=36  Identities=19%  Similarity=0.302  Sum_probs=27.5

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHhC---CeEEeccc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMEN   95 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg---~~vI~~D~   95 (818)
                      ...-+|.|+||+||||||+...+-..++   ..+++..+
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEd  194 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED  194 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEecc
Confidence            3457899999999999999999887663   34555544

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.89  E-value=0.054  Score=50.18  Aligned_cols=19  Identities=37%  Similarity=0.601  Sum_probs=18.0

Q ss_pred             EEEeCCCCCcHHHHHHHHH
Q 003460           65 VGIGGPSGSGKTSLAEKLA   83 (818)
Q Consensus        65 IgI~G~sGSGKSTlA~~La   83 (818)
                      |||.|.++||||||.+.|.
T Consensus         4 VaivG~~nvGKSTLin~L~   22 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMT   22 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            8999999999999999994

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.88  E-value=0.059  Score=51.74  Aligned_cols=23  Identities=26%  Similarity=0.239  Sum_probs=20.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHH
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      -.++.|+|++||||||+|..++.
T Consensus        34 G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          34 GSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            45899999999999999998864

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=89.86  E-value=0.1  Score=47.64  Aligned_cols=24  Identities=25%  Similarity=0.231  Sum_probs=20.5

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHH
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMA  538 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~  538 (818)
                      ++..-|+|.|.+|||||||.++|.
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~   34 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLK   34 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHh
Confidence            456678899999999999999874

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.86  E-value=0.077  Score=49.01  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=19.7

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      -+|+|.|.+|+|||||.++|..
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            4799999999999999999864

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.83  E-value=0.078  Score=47.16  Aligned_cols=20  Identities=35%  Similarity=0.463  Sum_probs=18.3

Q ss_pred             EeeeCCCCccHHHHHHHHHH
Q 003460          520 VGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~  539 (818)
                      |++.|++|+|||||.++|..
T Consensus         3 I~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            67899999999999999876

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=89.83  E-value=0.073  Score=49.95  Aligned_cols=21  Identities=29%  Similarity=0.529  Sum_probs=19.2

Q ss_pred             EEeeeCCCCccHHHHHHHHHH
Q 003460          519 IVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~  539 (818)
                      .|+|.|.+|||||||.+.|..
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHhcC
Confidence            599999999999999999963

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.82  E-value=0.077  Score=49.96  Aligned_cols=22  Identities=45%  Similarity=0.622  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.|+|.|.++||||||.+.|..
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~   25 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTT   25 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999975

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=89.81  E-value=0.075  Score=54.64  Aligned_cols=34  Identities=26%  Similarity=0.346  Sum_probs=25.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhC--Ce--EEecccee
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIG--CT--LISMENYR   97 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg--~~--vI~~D~~~   97 (818)
                      ++.+.||+|+|||.+|+.||..+|  .+  .|+..+++
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~  162 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPL  162 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSS
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhh
Confidence            466789999999999999999886  33  34444443

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=89.73  E-value=0.055  Score=49.72  Aligned_cols=24  Identities=29%  Similarity=0.404  Sum_probs=21.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLA   83 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La   83 (818)
                      ...+.|+|.|.+++|||||.+.|.
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHh
Confidence            346889999999999999999984

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=89.68  E-value=0.075  Score=54.65  Aligned_cols=25  Identities=36%  Similarity=0.578  Sum_probs=21.7

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      -++.+.||+|+|||.+|+.|+..++
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHHhc
Confidence            3455689999999999999999875

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.61  E-value=0.063  Score=49.71  Aligned_cols=20  Identities=40%  Similarity=0.587  Sum_probs=18.2

Q ss_pred             EeeeCCCCccHHHHHHHHHH
Q 003460          520 VGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~  539 (818)
                      |||.|.++||||||.++|..
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999999853

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.61  E-value=0.094  Score=52.80  Aligned_cols=24  Identities=38%  Similarity=0.445  Sum_probs=20.7

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHH
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +..||+|.|+.+||||||.+.|..
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~   54 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAG   54 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTT
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcC
Confidence            346999999999999999998753

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.53  E-value=0.085  Score=50.98  Aligned_cols=25  Identities=28%  Similarity=0.279  Sum_probs=21.8

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHH
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANI  540 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~  540 (818)
                      +--++.|+|++|||||+||..++..
T Consensus        36 ~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          36 SMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999998864

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.51  E-value=0.11  Score=50.26  Aligned_cols=25  Identities=24%  Similarity=0.271  Sum_probs=22.2

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.-.++.|.|++|||||++|..++.
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4457899999999999999999975

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.46  E-value=0.088  Score=50.97  Aligned_cols=25  Identities=40%  Similarity=0.429  Sum_probs=22.0

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHH
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASV   85 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~   85 (818)
                      .-.++.|.|++||||||||-.++..
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            3568999999999999999998764

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=89.44  E-value=0.11  Score=50.09  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=27.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMEN   95 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~   95 (818)
                      ...++.|.|++|||||++|..++...   |  +.+++++.
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~   64 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEE   64 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccC
Confidence            35689999999999999999998764   2  44566553

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.43  E-value=0.11  Score=47.64  Aligned_cols=23  Identities=35%  Similarity=0.366  Sum_probs=20.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHH
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      .+.|.+.|.+|+|||||.+.|..
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHc
Confidence            46799999999999999999865

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.33  E-value=0.073  Score=49.10  Aligned_cols=20  Identities=35%  Similarity=0.509  Sum_probs=18.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q 003460           64 TVGIGGPSGSGKTSLAEKLA   83 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La   83 (818)
                      .|+|.|.+++|||||.+.|.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~   21 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLT   21 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            48999999999999999995

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.32  E-value=0.089  Score=48.24  Aligned_cols=22  Identities=32%  Similarity=0.413  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      -+|+|.|.+++|||||.++|..
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            4699999999999999999953

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.18  E-value=0.12  Score=46.84  Aligned_cols=23  Identities=30%  Similarity=0.429  Sum_probs=20.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHH
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      .+.|.+.|.+|+|||||.+.+..
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            46799999999999999999964

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.16  E-value=0.11  Score=47.16  Aligned_cols=22  Identities=18%  Similarity=0.416  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.|.+.|.+|+|||||.+.|..
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5689999999999999998864

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=89.12  E-value=0.12  Score=47.05  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.|++.|++|||||||.+.|..
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            4688999999999999999864

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.95  E-value=0.12  Score=48.08  Aligned_cols=22  Identities=27%  Similarity=0.377  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.|.|.|.+|+|||||.+.|..
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            5689999999999999999853

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.90  E-value=0.12  Score=47.30  Aligned_cols=25  Identities=20%  Similarity=0.286  Sum_probs=21.8

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      ...+.|.|.|.+|+|||||.+.+..
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           3 QEKYRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh
Confidence            4457899999999999999999864

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.83  E-value=0.099  Score=47.91  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=19.7

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      -+|+|.|.+++|||||.++|..
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3689999999999999999964

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=88.78  E-value=0.12  Score=46.90  Aligned_cols=21  Identities=24%  Similarity=0.346  Sum_probs=18.4

Q ss_pred             EEEeeeCCCCccHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMA  538 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~  538 (818)
                      +-|.|.|++|||||||.++|.
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~   23 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFN   23 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            457899999999999999874

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.77  E-value=0.13  Score=47.11  Aligned_cols=22  Identities=45%  Similarity=0.546  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.|+|.|.+|+|||||.+.|..
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            5699999999999999999864

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.75  E-value=0.096  Score=50.82  Aligned_cols=25  Identities=28%  Similarity=0.353  Sum_probs=21.6

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHH
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASV   85 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~   85 (818)
                      +..+..|+|.-|||||||.+.|.+.
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            4578999999999999999988664

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=88.73  E-value=0.1  Score=49.96  Aligned_cols=26  Identities=27%  Similarity=0.377  Sum_probs=22.6

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      .--++.|+|++|+||||||..++..+
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34688999999999999999998754

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=88.71  E-value=0.065  Score=55.08  Aligned_cols=48  Identities=23%  Similarity=0.257  Sum_probs=31.5

Q ss_pred             cccch--hhHHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           39 ASFDH--GYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        39 ~s~~~--~~~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      ..|.+  |...+.+++....-.. +.--|.|.|++|+||||+|+.++..|.
T Consensus         4 ~~f~~I~Gq~~~kral~laa~~~-~~h~vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_           4 FPFSAIVGQEDMKLALLLTAVDP-GIGGVLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             CCGGGSCSCHHHHHHHHHHHHCG-GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CChhhccCcHHHHHHHHHHHhcc-CCCeEEEECCCCccHHHHHHHHHHhCC
Confidence            34555  5555555444322211 111378999999999999999999884

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=88.70  E-value=0.11  Score=55.06  Aligned_cols=27  Identities=26%  Similarity=0.319  Sum_probs=22.7

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      ..=+|.|+||.||||||+...+-+.+.
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            346788899999999999999888763

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=88.64  E-value=0.16  Score=50.20  Aligned_cols=32  Identities=19%  Similarity=0.262  Sum_probs=25.3

Q ss_pred             HHHHHcCCCCEEEeeeCCCCccHHHHHHHHHH
Q 003460          508 QALLENKGLPVIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       508 ~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      ..+......++-|.|.|.+||||||+.+.|..
T Consensus        23 ~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          23 GNLKQEDVNSLTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             HHHHHTTCCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             HHHhhcCCCCcEEEEECCCCCcHHHHHHHHhC
Confidence            33344455788999999999999999999853

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.62  E-value=0.11  Score=47.34  Aligned_cols=24  Identities=25%  Similarity=0.284  Sum_probs=20.8

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHH
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.+.|+|.|.+|+|||||.+.|..
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCcCHHHHHHHHHh
Confidence            346799999999999999999864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=88.61  E-value=0.31  Score=46.20  Aligned_cols=23  Identities=39%  Similarity=0.482  Sum_probs=20.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHh
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      -+.+.|++|+|||+++..||..+
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHH
Confidence            46799999999999999999865

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=88.59  E-value=0.12  Score=47.10  Aligned_cols=24  Identities=25%  Similarity=0.209  Sum_probs=20.5

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHH
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-+-|.|.|.+|||||||.++|..
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhc
Confidence            346688999999999999999864

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=88.58  E-value=0.11  Score=46.85  Aligned_cols=22  Identities=36%  Similarity=0.522  Sum_probs=19.2

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|++.|.++||||||.++|..
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3588999999999999998863

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.48  E-value=0.12  Score=47.89  Aligned_cols=25  Identities=20%  Similarity=0.226  Sum_probs=21.6

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHH
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      ++.+.|.|.|.+|+|||||.+.|..
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHh
Confidence            3457899999999999999999864

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=88.46  E-value=0.072  Score=54.77  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=20.5

Q ss_pred             EeeeCCCCccHHHHHHHHHHHhC
Q 003460          520 VGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       520 IgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      |.|.|++|+||||+|+.++..|.
T Consensus        31 vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCC
Confidence            55689999999999999999873

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.42  E-value=0.14  Score=46.48  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHH
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      .+.|.+.|.+|+|||||.+.+..
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            36799999999999999999865

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.42  E-value=0.12  Score=48.61  Aligned_cols=22  Identities=41%  Similarity=0.505  Sum_probs=19.6

Q ss_pred             EEeeeCCCCccHHHHHHHHHHH
Q 003460          519 IVGIGGPSGSGKTSLAHKMANI  540 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~  540 (818)
                      .|+|.|+++||||||.++|...
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999763

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=88.34  E-value=0.11  Score=50.17  Aligned_cols=26  Identities=27%  Similarity=0.388  Sum_probs=22.6

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      +.-++.|.|++|||||+||..++...
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45678899999999999999998764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.34  E-value=0.092  Score=48.37  Aligned_cols=21  Identities=24%  Similarity=0.431  Sum_probs=18.7

Q ss_pred             EEeeeCCCCccHHHHHHHHHH
Q 003460          519 IVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~  539 (818)
                      -|+|.|.+|+|||||.++|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            388999999999999999853

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.27  E-value=0.14  Score=46.50  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=20.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHH
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      .+.|.|.|.+|+|||||.+.+..
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            36799999999999999999864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=88.19  E-value=0.26  Score=46.80  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=18.7

Q ss_pred             eeeCCCCccHHHHHHHHHHHh
Q 003460          521 GIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       521 gIsG~sGSGKTTla~~L~~~l  541 (818)
                      .+.|++|+|||++++.|+..+
T Consensus        47 lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          47 VLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             EEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEecCCcccHHHHHHHHHHH
Confidence            457999999999999999865

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.16  E-value=0.13  Score=46.73  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.|.+.|.+|+|||||.+.|..
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5689999999999999999865

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.08  E-value=0.15  Score=46.87  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=20.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHH
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      .+.|+|.|.+|+|||||.+.+..
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            36799999999999999999854

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=88.05  E-value=0.12  Score=49.30  Aligned_cols=25  Identities=24%  Similarity=0.310  Sum_probs=22.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      --++.|.|++|+|||+||..++...
T Consensus        34 G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          34 QSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999998754

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=88.05  E-value=0.16  Score=50.13  Aligned_cols=36  Identities=22%  Similarity=0.375  Sum_probs=29.4

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccc
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLE  549 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~D  549 (818)
                      .+...||.++|--|+||||+|-.|+..+   |  +.++++|
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D   57 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD   57 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4567788999999999999998888776   3  5577777

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.02  E-value=0.15  Score=46.89  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=21.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHH
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      ..+.|.|.|.+|+|||||.+.+..
T Consensus         5 ~~~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           5 ETHKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHh
Confidence            457899999999999999999864

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.92  E-value=0.14  Score=46.98  Aligned_cols=23  Identities=22%  Similarity=0.431  Sum_probs=20.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHH
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      .+.|++.|.+|+|||||.+.+..
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            36799999999999999999864

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=87.92  E-value=0.13  Score=46.79  Aligned_cols=21  Identities=29%  Similarity=0.341  Sum_probs=18.4

Q ss_pred             EEeeeCCCCccHHHHHHHHHH
Q 003460          519 IVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~  539 (818)
                      -|.+.|++|||||||.++|..
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            467889999999999999865

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.82  E-value=0.14  Score=46.81  Aligned_cols=23  Identities=26%  Similarity=0.521  Sum_probs=20.5

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHH
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      .+.|.|.|.+|+|||||.+.|..
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            36799999999999999999965

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=87.76  E-value=0.085  Score=48.35  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=20.4

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHH
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMA  538 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~  538 (818)
                      ..+-|+|.|.+++|||||.++|.
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHh
Confidence            46779999999999999999884

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.75  E-value=0.15  Score=51.15  Aligned_cols=26  Identities=38%  Similarity=0.443  Sum_probs=21.9

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHH
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      ..+..+|+|+|+.+||||||.+.|..
T Consensus        29 ~~~v~vvsi~G~~~sGKS~llN~l~~   54 (277)
T d1f5na2          29 TQPMVVVAIVGLYRTGKSYLMNKLAG   54 (277)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTT
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHcC
Confidence            33456899999999999999999853

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.71  E-value=0.16  Score=46.50  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.|.|.|.+|+|||||.+.+..
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            5689999999999999999854

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.71  E-value=0.12  Score=49.97  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=21.2

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHH
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASV   85 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~   85 (818)
                      ++.+|+|.|.+.+|||||.+.|...
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhh
Confidence            3456999999999999999999653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.65  E-value=0.13  Score=48.53  Aligned_cols=21  Identities=38%  Similarity=0.335  Sum_probs=19.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHH
Q 003460           64 TVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~   84 (818)
                      .|+|.|++|||||||.+.|..
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999965

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.59  E-value=0.06  Score=48.57  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.|++.|.+++|||||.++|..
T Consensus         1 ikI~liG~~n~GKSSLin~l~g   22 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLN   22 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3599999999999999999965

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.58  E-value=0.15  Score=46.39  Aligned_cols=22  Identities=27%  Similarity=0.447  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.|++.|.+|+|||||.+.|..
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999999864

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.52  E-value=0.17  Score=46.83  Aligned_cols=22  Identities=45%  Similarity=0.536  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.|++.|.+|+|||||.+.|..
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5699999999999999999864

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.52  E-value=0.16  Score=46.23  Aligned_cols=22  Identities=32%  Similarity=0.502  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.|++.|.+|+|||||.+.+..
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5689999999999999998853

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=87.49  E-value=0.29  Score=48.74  Aligned_cols=21  Identities=38%  Similarity=0.465  Sum_probs=18.7

Q ss_pred             eeeCCCCccHHHHHHHHHHHh
Q 003460          521 GIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       521 gIsG~sGSGKTTla~~L~~~l  541 (818)
                      .+.|++|+|||++++.|+..+
T Consensus        43 lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          43 LLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             EEECCTTSSHHHHHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHHHHH
Confidence            367999999999999999865

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.39  E-value=0.16  Score=45.95  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=19.9

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHH
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      .+-|.+.|.+|+|||||.+++..
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            35588999999999999999865

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.34  E-value=0.17  Score=46.25  Aligned_cols=22  Identities=36%  Similarity=0.392  Sum_probs=19.5

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|.+.|.+|+|||||.++|..
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            4588999999999999999865

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.30  E-value=0.14  Score=49.78  Aligned_cols=21  Identities=33%  Similarity=0.477  Sum_probs=18.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLA   83 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La   83 (818)
                      .+.++.|+||+|||||.+.|.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~  116 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAIN  116 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHS
T ss_pred             CeEEEECCCCCCHHHHHHhhc
Confidence            367899999999999999994

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.26  E-value=0.18  Score=46.16  Aligned_cols=22  Identities=32%  Similarity=0.477  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.|.+.|.+|+|||||.+.+..
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4699999999999999999864

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.25  E-value=0.18  Score=46.00  Aligned_cols=23  Identities=35%  Similarity=0.445  Sum_probs=20.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHH
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      .+.|+|.|.+|+|||||.+.+..
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            46799999999999999998854

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.25  E-value=0.18  Score=45.79  Aligned_cols=22  Identities=32%  Similarity=0.326  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.|.|.|.+|+|||||.+.+..
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5799999999999999999864

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.22  E-value=0.13  Score=49.93  Aligned_cols=24  Identities=29%  Similarity=0.369  Sum_probs=20.7

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHH
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANI  540 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~  540 (818)
                      -.|+.|+|.-|||||||.+.|...
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhc
Confidence            357889999999999999988764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.21  E-value=0.16  Score=47.07  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=19.0

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|.|.|.+|+|||||.++|..
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            4578899999999999998864

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.18  E-value=0.18  Score=45.75  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.|+|.|.+|+|||||.+.|..
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5689999999999999999964

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.06  E-value=0.18  Score=46.01  Aligned_cols=22  Identities=32%  Similarity=0.445  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.|.+.|.+|+|||||.+.+..
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhC
Confidence            5689999999999999998853

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.99  E-value=0.15  Score=48.15  Aligned_cols=21  Identities=33%  Similarity=0.276  Sum_probs=19.0

Q ss_pred             EEeeeCCCCccHHHHHHHHHH
Q 003460          519 IVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~  539 (818)
                      -|+|.|++|||||||.++|..
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999999875

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=86.96  E-value=0.2  Score=50.31  Aligned_cols=27  Identities=33%  Similarity=0.571  Sum_probs=17.8

Q ss_pred             cCCCCEEEeeeCCCCccHHHHH-HHHHHHh
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLA-HKMANIV  541 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla-~~L~~~l  541 (818)
                      ....|++  |.|++||||||++ ++++..+
T Consensus        22 ~~~g~~l--V~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          22 TTEGPLL--IMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             CCSSCEE--EEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCEE--EEecCCccHHHHHHHHHHHHH
Confidence            4456754  5799999999754 4444443

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.91  E-value=0.19  Score=45.78  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=20.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHH
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      .+.|.+.|.+|+|||||.+.|..
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            36799999999999999999965

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=86.86  E-value=0.65  Score=46.05  Aligned_cols=76  Identities=20%  Similarity=0.213  Sum_probs=45.4

Q ss_pred             cCCCCEEEeeeCCCCccHHHHHHHHHHHhCCcc---cccccccchhhh-hcc-cCCCcccccHHHHHHHHHHHhcCCcee
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEV---VSLESYFKSEQV-KDF-KYDDFSSLDLSLLSKNISDIRNGRRTK  587 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~v---is~Ddfy~~~~~-~~~-~~d~p~t~D~~ll~~~L~~L~~g~~v~  587 (818)
                      ..++...+-+.||.++|||||+..|...+|...   -+-..|....-. +.. -+++|.. . ....+.+.++..|.++.
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg~~~~~~~~~~~f~l~~l~~k~~~~~~e~~~-~-~~~~~~~K~l~gGd~i~  177 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKM-T-AKVVESAKAILGGSKVR  177 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHHSSCEEECCTTCSSCTTGGGSSCSEEEECSCCE-E-TTTHHHHHHHHTTCCEE
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHHHhcchhhccccCCCccccccCCCEEEEEeCCCc-c-ccHHHHHHHhcCCCceE
Confidence            445667788889999999999999999997321   112233222111 111 1344432 2 12345678888999887


Q ss_pred             ccc
Q 003460          588 VPI  590 (818)
Q Consensus       588 ~P~  590 (818)
                      +..
T Consensus       178 v~~  180 (267)
T d1u0ja_         178 VDQ  180 (267)
T ss_dssp             C--
T ss_pred             eec
Confidence            765

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.84  E-value=0.18  Score=45.60  Aligned_cols=22  Identities=18%  Similarity=0.383  Sum_probs=19.1

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|.+.|.+|+|||||.+++..
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3477899999999999998865

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.69  E-value=0.21  Score=45.42  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHH
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      .+.|.+.|.+|+|||+|.+.+..
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            36799999999999999999964

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=86.67  E-value=0.13  Score=47.50  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=21.1

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHH
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKL   82 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~L   82 (818)
                      .++.+.|.+.|.+|||||||.+.|
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l   37 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRL   37 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHT
T ss_pred             CCceEEEEEECCCCCCHHHHHHHH
Confidence            345688999999999999999987

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=86.64  E-value=0.18  Score=48.73  Aligned_cols=25  Identities=28%  Similarity=0.371  Sum_probs=21.3

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      +.+|+|.|.+.||||||..+|....
T Consensus         5 ~p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           5 SPIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCccHHHHHHHHHhhc
Confidence            3459999999999999999997643

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=86.46  E-value=0.15  Score=48.44  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=19.8

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHH
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +--++-|.|++|||||+||..++.
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            446788899999999999987653

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.46  E-value=0.16  Score=46.19  Aligned_cols=23  Identities=26%  Similarity=0.323  Sum_probs=19.6

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHH
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      .+-|.|.|.+|+|||||.+++..
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            35578899999999999999864

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=86.30  E-value=0.11  Score=47.84  Aligned_cols=24  Identities=17%  Similarity=0.378  Sum_probs=20.5

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHhC
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      +..|.|+.||||||+..+|.-.|+
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            455689999999999999998764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.14  E-value=0.21  Score=45.59  Aligned_cols=22  Identities=55%  Similarity=0.638  Sum_probs=19.0

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|.+.|.+|+|||||.+++..
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            3478899999999999999864

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.01  E-value=0.076  Score=47.82  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=19.6

Q ss_pred             EEeeeCCCCccHHHHHHHHHHH
Q 003460          519 IVGIGGPSGSGKTSLAHKMANI  540 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~  540 (818)
                      -|++.|.+++|||||.++|...
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999753

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.99  E-value=0.29  Score=46.60  Aligned_cols=34  Identities=24%  Similarity=0.414  Sum_probs=26.7

Q ss_pred             EEEEEe-CCCCCcHHHHHHHHHHHh---C--CeEEeccce
Q 003460           63 VTVGIG-GPSGSGKTSLAEKLASVI---G--CTLISMENY   96 (818)
Q Consensus        63 ~iIgI~-G~sGSGKSTlA~~La~~L---g--~~vI~~D~~   96 (818)
                      .+|+|. +-.|+||||+|..||..|   |  +.+||+|..
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~~   42 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT   42 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            467777 678999999999998866   3  567888753

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.98  E-value=0.22  Score=45.69  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=19.4

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|.+.|.+|+|||||.+++..
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4588999999999999999865

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.93  E-value=0.24  Score=45.15  Aligned_cols=22  Identities=32%  Similarity=0.555  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.|.+.|.+|+|||+|.+.+..
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999865

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.91  E-value=0.2  Score=45.47  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=19.1

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|.+.|.+|+|||||.+++..
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3477899999999999999865

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.84  E-value=0.2  Score=46.83  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=20.4

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHH
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      .+.|+|.|.+|||||||.+.|..
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhh
Confidence            36699999999999999999864

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.83  E-value=0.18  Score=45.65  Aligned_cols=21  Identities=29%  Similarity=0.328  Sum_probs=19.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHH
Q 003460           64 TVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~   84 (818)
                      .|.|.|.+|+|||||.+.+..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999999864

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=85.82  E-value=0.46  Score=47.28  Aligned_cols=39  Identities=31%  Similarity=0.477  Sum_probs=27.9

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccccch
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFKS  554 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddfy~~  554 (818)
                      ...|+-|.|++||||||+|..++...   |  +.+|+..+-+.+
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~   99 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDP   99 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH
T ss_pred             CceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCH
Confidence            44689999999999999999887654   3  344444444444

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=85.79  E-value=0.18  Score=47.86  Aligned_cols=24  Identities=25%  Similarity=0.246  Sum_probs=19.9

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHH
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      ...++.|.|++|||||+||..++.
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            346789999999999999977653

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=85.74  E-value=0.42  Score=47.52  Aligned_cols=35  Identities=34%  Similarity=0.518  Sum_probs=27.1

Q ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccc
Q 003460           61 GIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMEN   95 (818)
Q Consensus        61 ~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~   95 (818)
                      ...++-|.|++||||||+|..++...   |  +.+||+..
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~   95 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH   95 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc
Confidence            34689999999999999999887644   3  45566654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.72  E-value=0.22  Score=45.17  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=19.9

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHH
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      .+-|.+.|.+|+|||||.+++..
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            35688899999999999999865

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=85.66  E-value=0.38  Score=47.92  Aligned_cols=23  Identities=48%  Similarity=0.492  Sum_probs=20.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHh
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      -+.+.|++|+|||+++..||..+
T Consensus        41 n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHHH
Confidence            45699999999999999999864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.60  E-value=0.23  Score=44.98  Aligned_cols=22  Identities=32%  Similarity=0.407  Sum_probs=19.2

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|.|.|.+|+|||||.+++..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4578899999999999999865

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=85.50  E-value=0.27  Score=48.87  Aligned_cols=25  Identities=32%  Similarity=0.417  Sum_probs=17.0

Q ss_pred             cCCCCEEEeeeCCCCccHHHHH-HHHHH
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLA-HKMAN  539 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla-~~L~~  539 (818)
                      ....|++  |.||+||||||++ .+++.
T Consensus        12 ~~~~~~l--I~g~aGTGKTt~l~~rv~~   37 (306)
T d1uaaa1          12 FVTGPCL--VLAGAGSGKTRVITNKIAH   37 (306)
T ss_dssp             CCSSEEE--ECCCTTSCHHHHHHHHHHH
T ss_pred             CCCCCEE--EEeeCCccHHHHHHHHHHH
Confidence            3456654  5799999999764 44444

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.48  E-value=0.21  Score=45.64  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=19.9

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHH
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      .+-|.+.|.+|+|||||.+++..
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            35688999999999999999864

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.47  E-value=0.21  Score=45.54  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=19.5

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|.+.|.+|+|||||.+++..
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4578899999999999999875

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=85.47  E-value=0.2  Score=46.32  Aligned_cols=22  Identities=36%  Similarity=0.570  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      ..|+|.|.+.||||||.+.|..
T Consensus         6 inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEEeCCCCcHHHHHHHHHH
Confidence            4699999999999999999953

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=85.44  E-value=0.23  Score=48.97  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASV   85 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~   85 (818)
                      -++.|+|++|+||||++..++..
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            45779999999999999999853

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.38  E-value=0.22  Score=45.69  Aligned_cols=22  Identities=27%  Similarity=0.206  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      ..|.|.|.+|+|||||...+..
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4578899999999999999865

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.36  E-value=0.22  Score=45.23  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=19.3

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|.+.|.+|+|||||..+|..
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4588899999999999999865

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=85.35  E-value=0.26  Score=44.94  Aligned_cols=22  Identities=27%  Similarity=0.369  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.|.|.|.+|+|||||.+.+..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5699999999999999999864

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.33  E-value=0.21  Score=46.09  Aligned_cols=24  Identities=21%  Similarity=0.224  Sum_probs=20.7

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHH
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +.+-|.|.|.+|+|||||.+++..
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHh
Confidence            456788999999999999999865

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=85.29  E-value=0.41  Score=47.51  Aligned_cols=25  Identities=40%  Similarity=0.505  Sum_probs=21.7

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      -.++-|.|++||||||+|-.++...
T Consensus        54 g~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          54 GRIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHH
Confidence            3689999999999999999887654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.28  E-value=0.25  Score=44.86  Aligned_cols=22  Identities=23%  Similarity=0.416  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.|+|.|.+|+|||||.+.+..
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5689999999999999999854

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=85.26  E-value=0.2  Score=49.45  Aligned_cols=23  Identities=22%  Similarity=0.328  Sum_probs=19.7

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANI  540 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~  540 (818)
                      -++.|+|++|+|||||+..++..
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            45679999999999999998853

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.24  E-value=0.26  Score=45.22  Aligned_cols=22  Identities=36%  Similarity=0.505  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.|.+.|.+|+|||||.+.|..
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5699999999999999999864

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.17  E-value=0.23  Score=45.48  Aligned_cols=24  Identities=21%  Similarity=0.284  Sum_probs=20.5

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHH
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +.+-|.|.|.+|+|||||.+++..
T Consensus         5 ~~~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           5 ETHKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHh
Confidence            346788999999999999998865

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=85.13  E-value=0.18  Score=46.16  Aligned_cols=24  Identities=25%  Similarity=0.289  Sum_probs=20.7

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHH
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLA   83 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La   83 (818)
                      ++.+.|.+.|.+|||||||.+.|.
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHh
Confidence            445778999999999999999984

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.13  E-value=0.26  Score=45.14  Aligned_cols=21  Identities=38%  Similarity=0.499  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLA   83 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La   83 (818)
                      +.|.+.|.+|+|||||.+.+.
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~   24 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFA   24 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            679999999999999999885

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.01  E-value=0.24  Score=44.99  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=18.5

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|.+.|.+|+|||||.+++..
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3477899999999999998753

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.85  E-value=0.21  Score=48.47  Aligned_cols=20  Identities=40%  Similarity=0.606  Sum_probs=17.6

Q ss_pred             EEeeeCCCCccHHHHHHHHH
Q 003460          519 IVGIGGPSGSGKTSLAHKMA  538 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~  538 (818)
                      +..+.|+||+|||||.++|.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~  116 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAIN  116 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHhhc
Confidence            56678999999999999884

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.81  E-value=0.29  Score=44.59  Aligned_cols=23  Identities=22%  Similarity=0.354  Sum_probs=20.2

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHH
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      .+.|.+.|.+|+|||||.+.+..
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCcCHHHHHHHHHh
Confidence            36789999999999999999864

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.81  E-value=0.26  Score=45.47  Aligned_cols=22  Identities=50%  Similarity=0.548  Sum_probs=19.2

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|.+.|.+|+|||||.+++..
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3478999999999999999865

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.80  E-value=0.25  Score=44.99  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=20.2

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHH
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      .+-|.|.|.+|+|||||.+++..
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            46688999999999999999865

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.80  E-value=0.27  Score=44.94  Aligned_cols=21  Identities=29%  Similarity=0.366  Sum_probs=18.3

Q ss_pred             EEeeeCCCCccHHHHHHHHHH
Q 003460          519 IVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~  539 (818)
                      -|.+.|.+|+|||||.+++..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            467899999999999998764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=84.78  E-value=0.18  Score=46.43  Aligned_cols=24  Identities=25%  Similarity=0.373  Sum_probs=20.5

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHH
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKM  537 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L  537 (818)
                      .++.+-|.+.|.+|||||||.+++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l   37 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRL   37 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHT
T ss_pred             CCceEEEEEECCCCCCHHHHHHHH
Confidence            345677889999999999999876

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=84.65  E-value=0.23  Score=48.88  Aligned_cols=33  Identities=27%  Similarity=0.397  Sum_probs=27.1

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHh---C--Cccccccc
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLES  550 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Dd  550 (818)
                      ..|+|+|--|+||||+|--|+..|   |  +.+|++|-
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~   39 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP   39 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            578899999999999999999877   3  45777773

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.64  E-value=0.27  Score=44.90  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=19.4

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|.+.|.+|+|||||.+++..
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4588999999999999998865

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.56  E-value=0.26  Score=45.66  Aligned_cols=22  Identities=27%  Similarity=0.317  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.|.|.|.+|+|||||.+.+..
T Consensus        10 ~Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          10 LKCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhh
Confidence            5699999999999999999864

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.51  E-value=0.28  Score=44.48  Aligned_cols=22  Identities=32%  Similarity=0.314  Sum_probs=19.2

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|.|.|.+|+|||||.+++..
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4578899999999999999865

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.45  E-value=0.33  Score=51.19  Aligned_cols=36  Identities=25%  Similarity=0.480  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHh-cCCcEEEEEeCCCCCcHHHHHHHHH
Q 003460           48 LVKSIQELREK-KGGIVTVGIGGPSGSGKTSLAEKLA   83 (818)
Q Consensus        48 l~~~i~~~~~~-~~~~~iIgI~G~sGSGKSTlA~~La   83 (818)
                      .+..++...++ .+.++-|+|.|.+|+|||||.+.|.
T Consensus        41 ~~~~i~~~l~~~~~~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          41 TNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCcEEEEECCCCCCHHHHHHHHh
Confidence            34444433332 3457889999999999999999994

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.44  E-value=0.28  Score=44.58  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=19.5

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|.+.|.+|+|||||..++..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4578899999999999999875

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.32  E-value=0.29  Score=45.37  Aligned_cols=22  Identities=23%  Similarity=0.465  Sum_probs=19.7

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLA   83 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La   83 (818)
                      -+.|.|.|.+|||||||.+.+.
T Consensus         2 ~iKivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHh
Confidence            3679999999999999999993

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.30  E-value=0.29  Score=44.37  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=19.2

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|.|.|.+|+|||||.++|..
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4577889999999999999865

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.23  E-value=0.28  Score=44.42  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=19.8

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHH
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      .+-|.+.|.+|+|||+|.+++..
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            35578899999999999999865

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.22  E-value=0.29  Score=44.47  Aligned_cols=23  Identities=35%  Similarity=0.446  Sum_probs=19.9

Q ss_pred             CEEEeeeCCCCccHHHHHHHHHH
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      .+-|.|.|.+|+|||||.+++..
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            45688999999999999998864

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=84.20  E-value=0.11  Score=47.62  Aligned_cols=23  Identities=17%  Similarity=0.408  Sum_probs=20.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q 003460           65 VGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        65 IgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      ..|+|+.||||||+..+|.-.|+
T Consensus        27 tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            46889999999999999987664

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.19  E-value=0.18  Score=46.11  Aligned_cols=23  Identities=26%  Similarity=0.400  Sum_probs=10.6

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHH
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      .+.|.|.|.+|||||||.+.|..
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEEEECCCCC-----------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            46799999999999999998853

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.02  E-value=0.28  Score=44.57  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=18.5

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|.+.|.+|+|||||.+++..
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhC
Confidence            3477899999999999998753

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=83.80  E-value=0.31  Score=46.38  Aligned_cols=25  Identities=40%  Similarity=0.494  Sum_probs=21.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           63 VTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      .-|+|.|-.++|||||+..|-...|
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g   28 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAA   28 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhh
Confidence            6699999999999999999965443

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.74  E-value=0.27  Score=44.74  Aligned_cols=21  Identities=29%  Similarity=0.469  Sum_probs=18.5

Q ss_pred             EEeeeCCCCccHHHHHHHHHH
Q 003460          519 IVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~  539 (818)
                      -|.+.|.+|+|||+|.+++..
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            467889999999999999875

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.66  E-value=0.2  Score=45.88  Aligned_cols=22  Identities=23%  Similarity=0.468  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.|++.|.+|+|||||.+.+..
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5799999999999999988743

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=83.53  E-value=0.23  Score=45.88  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=19.6

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|+|.|.+.||||||.++|..
T Consensus         6 inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEEeCCCCcHHHHHHHHHH
Confidence            4599999999999999999864

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.24  E-value=0.27  Score=45.74  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=20.1

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHH
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      .+.|++.|.+|+|||||.+.+..
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            35789999999999999998864

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.22  E-value=0.26  Score=44.36  Aligned_cols=21  Identities=29%  Similarity=0.292  Sum_probs=18.4

Q ss_pred             EEeeeCCCCccHHHHHHHHHH
Q 003460          519 IVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~  539 (818)
                      -|.+.|.+|+|||||.+++..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            367889999999999999865

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=83.22  E-value=0.28  Score=48.13  Aligned_cols=23  Identities=30%  Similarity=0.550  Sum_probs=19.8

Q ss_pred             EEeeeCCCCccHHHHHHHHHHHh
Q 003460          519 IVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      +..|+|++|+|||||+..|+..+
T Consensus        31 ~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            56689999999999999988754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.16  E-value=0.33  Score=44.96  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=19.0

Q ss_pred             CEEEeeeCCCCccHHHHHHHHH
Q 003460          517 PVIVGIGGPSGSGKTSLAHKMA  538 (818)
Q Consensus       517 p~iIgIsG~sGSGKTTla~~L~  538 (818)
                      .+-|.+.|.+|||||||.+++.
T Consensus         2 ~iKivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHh
Confidence            3557889999999999999994

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=83.13  E-value=0.3  Score=47.89  Aligned_cols=23  Identities=39%  Similarity=0.549  Sum_probs=20.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHh
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      +..|+|++|+|||||+..||..+
T Consensus        31 ~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            56799999999999999998753

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.11  E-value=0.91  Score=44.99  Aligned_cols=36  Identities=31%  Similarity=0.384  Sum_probs=27.0

Q ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccc
Q 003460           60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMEN   95 (818)
Q Consensus        60 ~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~   95 (818)
                      +...++-|.|++||||||+|..++...   |  +..|++..
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH   98 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            345789999999999999998877533   3  34566655

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.07  E-value=0.3  Score=45.57  Aligned_cols=22  Identities=27%  Similarity=0.412  Sum_probs=19.4

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|.|.|++|||||||.+++..
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhh
Confidence            5578899999999999999875

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=82.99  E-value=0.44  Score=44.51  Aligned_cols=33  Identities=18%  Similarity=0.067  Sum_probs=25.3

Q ss_pred             EEEEEeCCC-CCcHHHHHHHHHHHh---CC--eEEeccc
Q 003460           63 VTVGIGGPS-GSGKTSLAEKLASVI---GC--TLISMEN   95 (818)
Q Consensus        63 ~iIgI~G~s-GSGKSTlA~~La~~L---g~--~vI~~D~   95 (818)
                      +.+-|+|-. |+||||++-.|+..|   |.  .+++.|.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d~   40 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVA   40 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECccc
Confidence            457888884 999999999999877   53  4556554

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.72  E-value=0.24  Score=46.48  Aligned_cols=21  Identities=24%  Similarity=0.390  Sum_probs=18.6

Q ss_pred             EEeeeCCCCccHHHHHHHHHH
Q 003460          519 IVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +|.|+|++.||||.+|..|+.
T Consensus         1 iiLVtGGarSGKS~~AE~l~~   21 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHC
T ss_pred             CEEEECCCCccHHHHHHHHHh
Confidence            468999999999999998864

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=82.65  E-value=0.26  Score=45.00  Aligned_cols=24  Identities=21%  Similarity=0.265  Sum_probs=19.9

Q ss_pred             CCCEEEeeeCCCCccHHHHHHHHH
Q 003460          515 GLPVIVGIGGPSGSGKTSLAHKMA  538 (818)
Q Consensus       515 ~~p~iIgIsG~sGSGKTTla~~L~  538 (818)
                      ++.+-|.+.|++|||||||.+++.
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHh
Confidence            345667789999999999999864

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.62  E-value=0.64  Score=46.19  Aligned_cols=26  Identities=31%  Similarity=0.382  Sum_probs=21.8

Q ss_pred             CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          516 LPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       516 ~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      ...++-|.|++||||||+|..++...
T Consensus        59 ~g~i~e~~G~~~~GKT~l~l~~~~~~   84 (269)
T d1mo6a1          59 RGRVIEIYGPESSGKTTVALHAVANA   84 (269)
T ss_dssp             SSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cceeEEEecCCCcHHHHHHHHHHHHH
Confidence            45789999999999999998877543

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=82.42  E-value=1.5  Score=36.79  Aligned_cols=124  Identities=11%  Similarity=0.119  Sum_probs=70.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccc--hhhhhcccc
Q 003460           64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMF--DYQQKNRIG  141 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~--d~~~~~~~~  141 (818)
                      +|.+-||-++=|||+|..|++.|..++|-..+|-..-.        .-+.+.++++.+.....+.+..+  +.......-
T Consensus         2 liilegpdccfkstvaaklskelkypiikgssfelaks--------gneklfehfnkladednviidrfvysnlvyakkf   73 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS--------GNEKLFEHFNKLADEDNVIIDRFVYSNLVYAKKF   73 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHTCCEEECCCHHHHHH--------CHHHHHHHHHHHTTCCSEEEESCHHHHHHHTTTB
T ss_pred             eEEEeCCchhhHHHHHHHHHhhhcCceecCchhhhhhc--------cCHHHHHHHHhhccccceeeehhhhhhhHHHhhc
Confidence            57889999999999999999999999998777632111        12456667777766555444332  221111110


Q ss_pred             ccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccC--CCcCHHHHHH
Q 003460          142 SKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIG--DSCSLDSLID  202 (818)
Q Consensus       142 ~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~--~~~s~e~~~~  202 (818)
                            . .--++.|-.+-+-+.--+.-.-++|+++++.+...|...|.-.  +..+.+.+++
T Consensus        74 ------k-dysilterqlrfiedkikakakvvylhadpsvikkrlrvrgdeyiegkdidsile  129 (164)
T d2axpa1          74 ------K-DYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILE  129 (164)
T ss_dssp             ------S-SCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHTCSSCCSSHHHHHHH
T ss_pred             ------c-cceehhHHHHHHHHHHhhhheeEEEEecChHHHHHHhccccccccccCCHHHHHH
Confidence                  0 0011112222221211223346789999999988887766522  2245554444

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.25  E-value=0.3  Score=44.74  Aligned_cols=21  Identities=29%  Similarity=0.240  Sum_probs=17.8

Q ss_pred             EEeeeCCCCccHHHHHHHHHH
Q 003460          519 IVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       519 iIgIsG~sGSGKTTla~~L~~  539 (818)
                      -|.|.|.+|+|||||..++..
T Consensus         4 KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            356789999999999998865

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.21  E-value=0.36  Score=43.74  Aligned_cols=22  Identities=18%  Similarity=0.371  Sum_probs=19.0

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|.+.|.+|+|||||.+++..
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4577899999999999998865

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.14  E-value=0.43  Score=43.95  Aligned_cols=22  Identities=32%  Similarity=0.591  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +.|++.|.+|+|||||.+.+..
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            6799999999999999998854

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.10  E-value=0.4  Score=43.89  Aligned_cols=22  Identities=36%  Similarity=0.505  Sum_probs=19.5

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|.+.|.+|+|||||.++|..
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4588999999999999999865

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=81.90  E-value=0.41  Score=43.48  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.1

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|.+.|.+|+|||||.+++..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4577899999999999999864

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.85  E-value=0.42  Score=45.41  Aligned_cols=33  Identities=21%  Similarity=0.506  Sum_probs=24.8

Q ss_pred             EEEeee-CCCCccHHHHHHHHHHHh---C--Cccccccc
Q 003460          518 VIVGIG-GPSGSGKTSLAHKMANIV---G--CEVVSLES  550 (818)
Q Consensus       518 ~iIgIs-G~sGSGKTTla~~L~~~l---g--~~vis~Dd  550 (818)
                      .+|+|+ |-.|+||||+|..|+..+   |  +.++++|-
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~   40 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   40 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            466666 778899999999998877   3  44666663

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.82  E-value=0.39  Score=43.84  Aligned_cols=22  Identities=36%  Similarity=0.448  Sum_probs=18.9

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|.+.|.+|+|||||.+++..
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4578899999999999998753

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=81.70  E-value=0.74  Score=43.42  Aligned_cols=28  Identities=18%  Similarity=0.164  Sum_probs=24.9

Q ss_pred             cCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460           59 KGGIVTVGIGGPSGSGKTSLAEKLASVI   86 (818)
Q Consensus        59 ~~~~~iIgI~G~sGSGKSTlA~~La~~L   86 (818)
                      ++.+.-+.+.|++|+||||+|..|++.+
T Consensus        12 ~~~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          12 KSEGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             TCSSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            4467889999999999999999999865

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=81.54  E-value=0.45  Score=41.48  Aligned_cols=26  Identities=23%  Similarity=0.391  Sum_probs=19.9

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      ..+..|.+|+|||||+++-.+....|
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~~~~   33 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYAAQG   33 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHHTTT
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHcC
Confidence            35677899999999998866655444

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.46  E-value=0.39  Score=44.20  Aligned_cols=22  Identities=32%  Similarity=0.400  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHH
Q 003460           63 VTVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        63 ~iIgI~G~sGSGKSTlA~~La~   84 (818)
                      ..|.+.|.+|+|||+|.+.+..
T Consensus         3 ~KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4688999999999999998865

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.37  E-value=0.42  Score=43.44  Aligned_cols=22  Identities=23%  Similarity=0.354  Sum_probs=19.2

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|.+.|.+|+|||||.+++..
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5677889999999999998865

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.30  E-value=0.38  Score=44.43  Aligned_cols=22  Identities=32%  Similarity=0.335  Sum_probs=19.5

Q ss_pred             EEEeeeCCCCccHHHHHHHHHH
Q 003460          518 VIVGIGGPSGSGKTSLAHKMAN  539 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~  539 (818)
                      +-|.|.|.+|+|||||.+++..
T Consensus        10 ~Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          10 LKCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhh
Confidence            5589999999999999999865

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=81.25  E-value=0.65  Score=45.41  Aligned_cols=36  Identities=28%  Similarity=0.387  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          503 SVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       503 ~~~~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      +.+.++.+. ..+.|+  .|.|+.|+|||++|+.|....
T Consensus        12 ~~~~~~~~a-~~~~pv--lI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          12 ILEKIKKIS-CAECPV--LITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             HHHHHHHHT-TCCSCE--EEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHh-CCCCCE--EEECCCCcCHHHHHHHHHHhc
Confidence            344444432 345564  558999999999999998754

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=81.13  E-value=0.56  Score=46.47  Aligned_cols=34  Identities=38%  Similarity=0.592  Sum_probs=26.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccc
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMEN   95 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~   95 (818)
                      ..++-|.|++||||||+|-.++...   |  +.+|++..
T Consensus        54 g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~   92 (263)
T d1u94a1          54 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH   92 (263)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            4689999999999999999987644   3  34566554

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=81.09  E-value=0.43  Score=49.51  Aligned_cols=22  Identities=36%  Similarity=0.413  Sum_probs=17.8

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHH
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLA   83 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La   83 (818)
                      ..+..|+||+|+||||+...+.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHH
Confidence            3478999999999999875543

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.09  E-value=0.32  Score=45.54  Aligned_cols=21  Identities=33%  Similarity=0.411  Sum_probs=18.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHH
Q 003460           64 TVGIGGPSGSGKTSLAEKLAS   84 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La~   84 (818)
                      +|.|+|++.||||.+|..|+.
T Consensus         1 iiLVtGGarSGKS~~AE~l~~   21 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHC
T ss_pred             CEEEECCCCccHHHHHHHHHh
Confidence            478999999999999999864

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=80.88  E-value=0.41  Score=45.45  Aligned_cols=25  Identities=32%  Similarity=0.438  Sum_probs=21.5

Q ss_pred             EEEeeeCCCCccHHHHHHHHHHHhC
Q 003460          518 VIVGIGGPSGSGKTSLAHKMANIVG  542 (818)
Q Consensus       518 ~iIgIsG~sGSGKTTla~~L~~~lg  542 (818)
                      +=|+|.|-.+||||||+.+|....|
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g   28 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAA   28 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhh
Confidence            5599999999999999999975543

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.87  E-value=0.73  Score=43.44  Aligned_cols=28  Identities=18%  Similarity=0.148  Sum_probs=24.2

Q ss_pred             CCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          514 KGLPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       514 ~~~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      .+.+.-+.+.|++|+||||+|..|++.+
T Consensus        12 ~~~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          12 KSEGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             TCSSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            3467778899999999999999999865

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=80.77  E-value=0.17  Score=49.39  Aligned_cols=20  Identities=40%  Similarity=0.594  Sum_probs=17.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q 003460           64 TVGIGGPSGSGKTSLAEKLA   83 (818)
Q Consensus        64 iIgI~G~sGSGKSTlA~~La   83 (818)
                      +..+.|+||+|||||.+.|.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~  118 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAIS  118 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHC
T ss_pred             eEEEECCCCccHHHHHHhhc
Confidence            45688999999999999994

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=80.40  E-value=0.56  Score=49.14  Aligned_cols=26  Identities=35%  Similarity=0.671  Sum_probs=20.5

Q ss_pred             cCCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460          513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV  541 (818)
Q Consensus       513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~l  541 (818)
                      .++.|++|   |++|+|||+++..|+..+
T Consensus        42 ~k~n~llv---G~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          42 TKNNPVLI---GEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             SCCCCEEE---ECTTSCHHHHHHHHHHHH
T ss_pred             CCCCCeEE---CCCCCCHHHHHHHHHHHH
Confidence            34456554   999999999999999765

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=80.26  E-value=0.44  Score=47.59  Aligned_cols=26  Identities=27%  Similarity=0.492  Sum_probs=22.3

Q ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460           62 IVTVGIGGPSGSGKTSLAEKLASVIG   87 (818)
Q Consensus        62 ~~iIgI~G~sGSGKSTlA~~La~~Lg   87 (818)
                      ...|+|.|..|||||||+..|....|
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g   31 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTG   31 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcC
Confidence            45699999999999999999976544

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=80.20  E-value=0.43  Score=47.26  Aligned_cols=20  Identities=35%  Similarity=0.423  Sum_probs=14.4

Q ss_pred             EEEeCCCCCcHHHHH-HHHHH
Q 003460           65 VGIGGPSGSGKTSLA-EKLAS   84 (818)
Q Consensus        65 IgI~G~sGSGKSTlA-~~La~   84 (818)
                      +.|.|++||||||++ ..++.
T Consensus        17 ~lI~g~aGTGKTt~l~~rv~~   37 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNKIAH   37 (306)
T ss_dssp             EEECCCTTSCHHHHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHHHHH
Confidence            457799999999864 34433

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=80.12  E-value=0.49  Score=47.01  Aligned_cols=33  Identities=33%  Similarity=0.428  Sum_probs=27.8

Q ss_pred             HhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCe
Q 003460           57 EKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCT   89 (818)
Q Consensus        57 ~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~   89 (818)
                      +..++...+.+.|++++|||+++..|...+|..
T Consensus        99 ~~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg~~  131 (267)
T d1u0ja_          99 KKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFY  131 (267)
T ss_dssp             TCSTTCCEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred             CCCCccEEEEEEcCCCCCHHHHHHHHHHHhcch
Confidence            344667788899999999999999999999754